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Chekan JR, Mydy LS, Pasquale MA, Kersten RD. Plant peptides - redefining an area of ribosomally synthesized and post-translationally modified peptides. Nat Prod Rep 2024; 41:1020-1059. [PMID: 38411572 PMCID: PMC11253845 DOI: 10.1039/d3np00042g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Indexed: 02/28/2024]
Abstract
Covering 1965 to February 2024Plants are prolific peptide chemists and are known to make thousands of different peptidic molecules. These peptides vary dramatically in their size, chemistry, and bioactivity. Despite their differences, all plant peptides to date are biosynthesized as ribosomally synthesized and post-translationally modified peptides (RiPPs). Decades of research in plant RiPP biosynthesis have extended the definition and scope of RiPPs from microbial sources, establishing paradigms and discovering new families of biosynthetic enzymes. The discovery and elucidation of plant peptide pathways is challenging due to repurposing and evolution of housekeeping genes as both precursor peptides and biosynthetic enzymes and due to the low rates of gene clustering in plants. In this review, we highlight the chemistry, biosynthesis, and function of the known RiPP classes from plants and recommend a nomenclature for the recent addition of BURP-domain-derived RiPPs termed burpitides. Burpitides are an emerging family of cyclic plant RiPPs characterized by macrocyclic crosslinks between tyrosine or tryptophan side chains and other amino acid side chains or their peptide backbone that are formed by copper-dependent BURP-domain-containing proteins termed burpitide cyclases. Finally, we review the discovery of plant RiPPs through bioactivity-guided, structure-guided, and gene-guided approaches.
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Affiliation(s)
- Jonathan R Chekan
- Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, NC, USA.
| | - Lisa S Mydy
- Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.
| | - Michael A Pasquale
- Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, NC, USA.
| | - Roland D Kersten
- Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.
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2
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Panthi U, McCallum B, Kovalchuk I, Rampitsch C, Badea A, Yao Z, Bilichak A. Foliar application of plant-derived peptides decreases the severity of leaf rust (Puccinia triticina) infection in bread wheat (Triticum aestivum L.). J Genet Eng Biotechnol 2024; 22:100357. [PMID: 38494271 PMCID: PMC10903759 DOI: 10.1016/j.jgeb.2024.100357] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 01/15/2024] [Accepted: 02/02/2024] [Indexed: 03/19/2024]
Abstract
BACKGROUND Screening and developing novel antifungal agents with minimal environmental impact are needed to maintain and increase crop production, which is constantly threatened by various pathogens. Small peptides with antimicrobial and antifungal activities have been known to play an important role in plant defense both at the pathogen level by suppressing its growth and proliferation as well as at the host level through activation or priming of the plant's immune system for a faster, more robust response against fungi. Rust fungi (Pucciniales) are plant pathogens that can infect key crops and overcome resistance genes introduced in elite wheat cultivars. RESULTS We performed an in vitro screening of 18 peptides predominantly of plant origin with antifungal or antimicrobial activity for their ability to inhibit leaf rust (Puccinia triticina, CCDS-96-14-1 isolate) urediniospore germination. Nine peptides demonstrated significant fungicidal properties compared to the control. Foliar application of the top three candidates, β-purothionin, Purothionin-α2 and Defensin-2, decreased the severity of leaf rust infection in wheat (Triticum aestivum L.) seedlings. Additionally, increased pathogen resistance was paralleled by elevated expression of defense-related genes. CONCLUSIONS Identified antifungal peptides could potentially be engineered in the wheat genome to provide an alternative source of genetic resistance to leaf rust.
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Affiliation(s)
- Urbashi Panthi
- Agriculture and Agri-Food Canada, Morden Research and Development Centre, 101 Rte 100 #100, Morden, MB R6M 1Y5, Canada
| | - Brent McCallum
- Agriculture and Agri-Food Canada, Morden Research and Development Centre, 101 Rte 100 #100, Morden, MB R6M 1Y5, Canada
| | - Igor Kovalchuk
- Department of Biological Sciences, University of Lethbridge, 4401 University Dr W, Lethbridge, AB T1K 3M4, Canada
| | - Christof Rampitsch
- Agriculture and Agri-Food Canada, Morden Research and Development Centre, 101 Rte 100 #100, Morden, MB R6M 1Y5, Canada
| | - Ana Badea
- Agriculture and Agri-Food Canada, Brandon Research and Development Centre, 2701 Grand Valley Road, P.O. Box 1000A, Brandon, MB R7A 5Y3, Canada
| | - Zhen Yao
- Agriculture and Agri-Food Canada, Morden Research and Development Centre, 101 Rte 100 #100, Morden, MB R6M 1Y5, Canada
| | - Andriy Bilichak
- Agriculture and Agri-Food Canada, Morden Research and Development Centre, 101 Rte 100 #100, Morden, MB R6M 1Y5, Canada.
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3
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Höng K, Austerlitz T, Bohlmann T, Bohlmann H. The thionin family of antimicrobial peptides. PLoS One 2021; 16:e0254549. [PMID: 34260649 PMCID: PMC8279376 DOI: 10.1371/journal.pone.0254549] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Accepted: 06/28/2021] [Indexed: 11/19/2022] Open
Abstract
Thionins are antimicrobial peptides found only in plants. They are first produced as preproproteins and then processed to yield the usually 5 kDa, basic thionin peptide with three or four disulfide bridges. So far, thionins had only been found in some plant families of angiosperms. The One Thousand Plant Transcriptomes Initiative (1KP project) has sequenced the transcriptomes of more than 1000 plant species. We have used these data to search for new thionin sequences which gave 225 hits. After removing doublets these resulted in 133 new thionins. No sequences were found in algae and mosses. The phylogenetically earliest hits were from Selaginella species and from conifers. Many hits were from angiosperm plant families which were previously not known to contain thionins. A large gene family for thionins was found in Papaver. We isolated a genomic clone from Papaver somniferum which confirmed the general genomic structure with two small introns within the acidic domain. We also expressed the thionin encoded by the genomic clone and found that it had antimicrobial activity in vitro, especially against fungi. Previously, we had grouped thionins into four classes. The new data reported here led us to revise this classification. We now recognize only class 1 thionins with eight cysteine residues and class 2 thionins with six cysteine residues. The different variants that we found (and also previously known variants) can all be traced back to one of these two classes. Some of the variants had an uneven number of cysteine residues and it is not clear at the moment what that means for their threedimensional structure.
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Affiliation(s)
- Katharina Höng
- Department of Crop Sciences, Institute of Plant Protection, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Tina Austerlitz
- Department of Crop Sciences, Institute of Plant Protection, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Timo Bohlmann
- Department of Crop Sciences, Institute of Plant Protection, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Holger Bohlmann
- Department of Crop Sciences, Institute of Plant Protection, University of Natural Resources and Life Sciences, Vienna, Austria
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4
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Moolhuijzen P, Lawrence JA, Ellwood SR. Potentiators of Disease During Barley Infection by Pyrenophora teres f. teres in a Susceptible Interaction. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2021; 34:779-792. [PMID: 33787315 DOI: 10.1094/mpmi-10-20-0297-r] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Pyrenophora teres f. teres is a necrotrophic fungal pathogen and causal agent of net form net blotch (NFNB), a significant disease of barley. RNA-seq data encompassing asymptomatic and subsequent necrotrophic phases of the pathogen was obtained for P. teres f. teres isolate W1-1 in NFNB-sensitive cultivar Baudin. Host genes notably regulated during infection included concerted induction of over half the repertoire of disease resistance genes, together with genes involved in oxidation-reduction processes, characteristic of a hypersensitive response. Several systemic acquired resistance response genes were suppressed and there was a complete absence of defense-related thionin gene expression. In P. teres f. teres, genes involved in hydrolase activities and cell-wall catabolic processes were induced during infection, while nitrate assimilation and response to oxidative stress processes were suppressed. Timecourse data allowed a number of predicted P. teres f. teres effector genes with differing expression profiles to be identified that may underlie barley sensitivity to NFNB. Candidate genes involved in the host-pathogen interaction provide a basis for functional characterization and control strategies based on fungicide or mutation targets, which will facilitate further research aimed at controlling NFNB disease.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.
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Affiliation(s)
- Paula Moolhuijzen
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Julie A Lawrence
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Simon R Ellwood
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
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5
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Barashkova AS, Sadykova VS, Salo VA, Zavriev SK, Rogozhin EA. Nigellothionins from Black Cumin ( Nigella sativa L.) Seeds Demonstrate Strong Antifungal and Cytotoxic Activity. Antibiotics (Basel) 2021; 10:antibiotics10020166. [PMID: 33562041 PMCID: PMC7914917 DOI: 10.3390/antibiotics10020166] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Revised: 01/29/2021] [Accepted: 02/02/2021] [Indexed: 11/16/2022] Open
Abstract
High-cationic biologically active peptides of the thionins family were isolated from black cumin (Nigella sativa L.) seeds. According to their physicochemical characteristics, they were classified as representatives of the class I thionin subfamily. Novel peptides were called “Nigellothionins”, so-called because of their source plant. Thionins are described as components of plant innate immunity to environmental stress factors. Nine nigellothionins were identified in the plant in different amounts. Complete amino acid sequences were determined for three of them, and a high degree of similarity was detected. Three nigellothionins were examined for antifungal properties against collection strains. The dominant peptide, NsW2, was also examined for activity against clinical isolates of fungi. Cytotoxic activity was determined for NsW2. Nigellothionins activity against all collection strains and clinical isolates varied from absence to a value comparable to amphotericin B, which can be explained by the presence of amino acid substitutions in their sequences. Cytotoxic activity in vitro for NsW2 was detected at sub-micromolar concentrations. This has allowed us to propose an alteration of the molecular mechanism of action at different concentrations. The results obtained suggest that nigellothionins are natural compounds that can be used as antimycotic and anti-proliferative agents.
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Affiliation(s)
- Anna S. Barashkova
- Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry Russian Academy of Sciences, 16/10, ul. Miklukho-Maklaya, 117997 Moscow, Russia; (S.K.Z.); (E.A.R.)
- Correspondence: ; Tel.: +7-926-284-93-23
| | - Vera S. Sadykova
- Gause Institute of New Antibiotics, 11 ul. Bol’shaya Pirogovskaya, 119021 Moscow, Russia;
| | - Victoria A. Salo
- Laboratory of Molecular and Cellular Biophysics, Sevastopol State University, 33 Universitetskaya Str., 299053 Sevastopol, Russia;
| | - Sergey K. Zavriev
- Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry Russian Academy of Sciences, 16/10, ul. Miklukho-Maklaya, 117997 Moscow, Russia; (S.K.Z.); (E.A.R.)
| | - Eugene A. Rogozhin
- Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry Russian Academy of Sciences, 16/10, ul. Miklukho-Maklaya, 117997 Moscow, Russia; (S.K.Z.); (E.A.R.)
- All-Russian Institute of Plant Protection, Pushkin, 196608 St. Petersburg, Russia
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6
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Shwaiki LN, Arendt EK, Lynch KM. Plant compounds for the potential reduction of food waste - a focus on antimicrobial peptides. Crit Rev Food Sci Nutr 2021; 62:4242-4265. [PMID: 33480260 DOI: 10.1080/10408398.2021.1873733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
A large portion of global food waste is caused by microbial spoilage. The modern approach to preserve food is to apply different hurdles for microbial pathogens to overcome. These vary from thermal processes and chemical additives, to the application of irradiation and modified atmosphere packaging. Even though such preservative techniques exist, loss of food to spoilage still prevails. Plant compounds and peptides represent an untapped source of potential novel natural food preservatives. Of these, antimicrobial peptides (AMPs) are very promising for exploitation. AMPs are a significant component of a plant's innate defense system. Numerous studies have demonstrated the potential application of these AMPs; however, more studies, particularly in the area of food preservation are warranted. This review examines the literature on the application of AMPs and other plant compounds for the purpose of reducing food losses and waste (including crop protection). A focus is placed on the plant defensins, their natural extraction and synthetic production, and their safety and application in food preservation. In addition, current challenges and impediments to their full exploitation are discussed.
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Affiliation(s)
- Laila N Shwaiki
- School of Food and Nutritional Sciences, University College Cork, Cork, Ireland
| | - Elke K Arendt
- School of Food and Nutritional Sciences, University College Cork, Cork, Ireland.,APC Microbiome Ireland, University College Cork, Cork, Ireland
| | - Kieran M Lynch
- School of Food and Nutritional Sciences, University College Cork, Cork, Ireland
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7
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Azmi S, Hussain MK. Analysis of structures, functions, and transgenicity of phytopeptides defensin and thionin: a review. BENI-SUEF UNIVERSITY JOURNAL OF BASIC AND APPLIED SCIENCES 2021. [DOI: 10.1186/s43088-020-00093-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Abstract
Background
Antimicrobial peptides are very primitive innate defense molecules of almost all organisms, from microbes to mammalians and vascular seed-bearing plants. Antimicrobial peptides of plants categorized into cysteine-rich peptides (CRPs) and others and most of the antimicrobial peptides belong to CRPs group. These peptides reported showing the great extent of protecting property against bacteria, fungi, viruses, insect, nematode, and another kind of microbes. To develop a resistant plant against pathogenic fungi, there have been several studies executed to understand the efficiency of transgenicity of these antimicrobial peptides.
Main text
Apart from the intrinsic property of the higher organism for identifying and activating microbial attack defense device, it also involves innate defense mechanism and molecules. In the current review article, apart from the structural and functional characterization of peptides defensin and thionin, we have attempted to provide a succinct overview of the transgenic development of these defense peptides, that are expressed in a constitutive and or over-expressive manner when biotic and abiotic stress inflicted. Transgenic of different peptides show different competence in plants. Most of the transgenic studies made for defensin and thionin revealed the effective transgenic capacity of these peptides.
Conclusion
There have been several studies reported successful development of transgenic plants based on peptides defensin and thionin and observed diverse level of resistance-conferring potency in different plants against phytopathogenic fungi. But due to long regulatory process, there has not been marketed any antimicrobial peptides based transgenic plants yet. However, success report state that possibly in near future transgenic plants of AMPs would be released with devoid of harmful effect, with good efficiency, reproducibility, stability, and least production cost.
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8
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Takashima T, Sunagawa R, Uechi K, Taira T. Antifungal activities of LysM-domain multimers and their fusion chitinases. Int J Biol Macromol 2020; 154:1295-1302. [DOI: 10.1016/j.ijbiomac.2019.11.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Revised: 10/29/2019] [Accepted: 11/02/2019] [Indexed: 10/25/2022]
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9
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Przydacz M, Jones R, Pennington HG, Belmans G, Bruderer M, Greenhill R, Salter T, Wellham PAD, Cota E, Spanu PD. Mode of Action of the Catalytic Site in the N-Terminal Ribosome-Inactivating Domain of JIP60. PLANT PHYSIOLOGY 2020; 183:385-398. [PMID: 32123042 PMCID: PMC7210648 DOI: 10.1104/pp.19.01029] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Accepted: 02/07/2020] [Indexed: 06/10/2023]
Abstract
Jasmonate-induced protein 60 (JIP60) is a ribosome-inactivating protein (RIP) from barley (Hordeum vulgare) and is involved in the plant immune response dependent on jasmonate hormones. Here, we demonstrate in Nicotiana benthamiana that transient expression of the N-terminal domain of JIP60, from which the inhibitor domain (amino acids 163-185) is removed, initiates cell death, leading to extensive necrosis of leaf tissues. We used structure prediction of JIP60 to identify potential catalytic amino acids in the active site and tested these by mutagenesis and in planta assays of necrosis induction by expression in N. benthamiana, as well as through an in vitro translation-inactivation assay. We found that Tyr 96, Glu 201, Arg 204, and Trp 234 in the presumptive active site of JIP60 are conserved in 815 plant RIPs in the Pfam database that were identified by HUMMR as containing a RIP domain. When these amino acid residues are individually mutated, the necrosis-inducing activity is completely abolished. We therefore propose that the role of these amino acids in JIP60 activity is to depurinate adenosine in ribosomes. This study provides insight into the catalytic mechanism of JIP60.
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Affiliation(s)
- Michal Przydacz
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Rhian Jones
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Helen G Pennington
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Gerard Belmans
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Maya Bruderer
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Rachel Greenhill
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Tia Salter
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Peter A D Wellham
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Ernesto Cota
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Pietro D Spanu
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
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10
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Hao G, Bakker MG, Kim HS. Enhanced Resistance to Fusarium graminearum in Transgenic Arabidopsis Plants Expressing a Modified Plant Thionin. PHYTOPATHOLOGY 2020; 110:1056-1066. [PMID: 32043419 DOI: 10.1094/phyto-12-19-0447-r] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
The fungal pathogen Fusarium graminearum causes Fusarium head blight (FHB) on wheat, barley, and other grains. FHB results in yield reductions and contaminates grain with trichothecene mycotoxins, which threaten food safety and food security. Innovative mechanisms for controlling FHB are urgently needed. We have previously shown that transgenic tobacco and citrus plants expressing a modified thionin (Mthionin) exhibited enhanced resistance toward several bacterial pathogens. The aim of this study was to investigate whether overexpression of Mthionin could be similarly efficacious against F. graminearum, and whether transgenic expression of Mthionin impacts the plant microbiome. Transgenic Arabidopsis plants expressing Mthionin were generated and confirmed. When challenged with F. graminearum, Mthionin-expressing plants showed less disease and fungal biomass in both leaves and inflorescences compared with control plants. When infiltrated into leaves, macroconidia of F. graminearum germinated at lower rates and produced less hyphal growth in Arabidopsis leaves expressing Mthionin. Moreover, marker genes related to defense signaling pathways were expressed at significantly higher levels after F. graminearum infection in Mthionin transgenic Arabidopsis plants. However, Mthionin expression did not appreciably alter the overall microbiome associated with transgenic plants grown under controlled conditions; across leaves and roots of Mthionin-expressing and control transgenic plants, only a few bacterial and fungal taxa differed, and differences between Mthionin transformants were of similar magnitude compared with control plants. In sum, our data indicate that Mthionin is a promising candidate to produce transgenic crops for reducing FHB severity and ultimately mycotoxin contamination.
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Affiliation(s)
- Guixia Hao
- Mycotoxin Prevention and Applied Microbiology Research Unit, NCAUR, U.S. Department of Agriculture-Agricultural Research Service, Peoria, IL 61604
| | - Matthew G Bakker
- Mycotoxin Prevention and Applied Microbiology Research Unit, NCAUR, U.S. Department of Agriculture-Agricultural Research Service, Peoria, IL 61604
| | - Hye-Seon Kim
- Mycotoxin Prevention and Applied Microbiology Research Unit, NCAUR, U.S. Department of Agriculture-Agricultural Research Service, Peoria, IL 61604
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11
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Das K, Datta K, Karmakar S, Datta SK. Antimicrobial Peptides - Small but Mighty Weapons for Plants to Fight Phytopathogens. Protein Pept Lett 2019; 26:720-742. [PMID: 31215363 DOI: 10.2174/0929866526666190619112438] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2019] [Revised: 03/27/2019] [Accepted: 04/25/2019] [Indexed: 11/22/2022]
Abstract
Antimicrobial Peptides (AMPs) have diverse structures, varied modes of actions, and can inhibit the growth of a wide range of pathogens at low concentrations. Plants are constantly under attack by a wide range of phytopathogens causing massive yield losses worldwide. To combat these pathogens, nature has armed plants with a battery of defense responses including Antimicrobial Peptides (AMPs). These peptides form a vital component of the two-tier plant defense system. They are constitutively expressed as part of the pre-existing first line of defense against pathogen entry. When a pathogen overcomes this barrier, it faces the inducible defense system, which responds to specific molecular or effector patterns by launching an arsenal of defense responses including the production of AMPs. This review emphasizes the structural and functional aspects of different plant-derived AMPs, their homology with AMPs from other organisms, and how their biotechnological potential could generate durable resistance in a wide range of crops against different classes of phytopathogens in an environmentally friendly way without phenotypic cost.
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Affiliation(s)
- Kaushik Das
- Laboratory of Translational Research on Transgenic Crops, Department of Botany, University of Calcutta, 35 Ballygunge Circular Road, Kolkata 700019, West Bengal, India
| | - Karabi Datta
- Laboratory of Translational Research on Transgenic Crops, Department of Botany, University of Calcutta, 35 Ballygunge Circular Road, Kolkata 700019, West Bengal, India
| | - Subhasis Karmakar
- Laboratory of Translational Research on Transgenic Crops, Department of Botany, University of Calcutta, 35 Ballygunge Circular Road, Kolkata 700019, West Bengal, India
| | - Swapan K Datta
- Laboratory of Translational Research on Transgenic Crops, Department of Botany, University of Calcutta, 35 Ballygunge Circular Road, Kolkata 700019, West Bengal, India
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12
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Almaghrabi B, Ali MA, Zahoor A, Shah KH, Bohlmann H. Arabidopsis thionin-like genes are involved in resistance against the beet-cyst nematode (Heterodera schachtii). PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 140:55-67. [PMID: 31082659 DOI: 10.1016/j.plaphy.2019.05.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2019] [Revised: 05/02/2019] [Accepted: 05/02/2019] [Indexed: 06/09/2023]
Abstract
Plants express various antimicrobial peptides including thionins to protect themselves against pathogens. It was recently found that, in addition to four thionin genes, Arabidopsis contains 67 thionin-like (ThiL) genes including six pseudogenes. It is known that thionins have antimicrobial activity and are part of the plant defense system, however, nothing is known about ThiL genes. In this study, we present a bioinformatic analysis of the (ThiL) gene family in Arabidopsis. We identified 15 different motifs which positioned the ThiL peptides in four groups. A comparison of amino acid sequences showed that the ThiL peptides are actually more similar to the acidic domain of thionin proproteins than to the thionin domain. We selected 10 ThiL genes to study the expression and possible function in the Arabidopsis plant. RT-PCR and promoter:GUS fusions showed that most genes were expressed at a very low level but in several organs and at different developmental stages. Some genes were also expressed in syncytia induced by the beet cyst nematode Heterodera schachti in roots while others were downregulated in syncytia. Some overexpression lines supported lower number of nematodes that developed on the roots after inoculation. Two of the genes resulted in a strong hypersensitive response when infiltrated into leaves of Nicotiana benthamiana. These results indicate that ThiL genes might be involved in the response to biotic stress. ThiL genes have been expanded in the Brassicales and specifically the Brassicaceae. The most extreme example is the CRP2460 subfamily that contains 28 very closely related genes from Arabidopsis which are mostly the result of tandem duplications.
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Affiliation(s)
- Bachar Almaghrabi
- Division of Plant Protection, Department of Crop Sciences, University of Natural Resources and Life Sciences, Vienna, Austria.
| | - Muhammad Amjad Ali
- Division of Plant Protection, Department of Crop Sciences, University of Natural Resources and Life Sciences, Vienna, Austria; Department of Plant Pathology, University of Agriculture, 38040, Faisalabad, Pakistan; Centre of Agricultural Biochemistry and Biotechnology, University of Agriculture, 38040, Faisalabad, Pakistan.
| | - Adil Zahoor
- Department of Plant Pathology, University of Agriculture, 38040, Faisalabad, Pakistan.
| | - Kausar Hussain Shah
- Division of Plant Protection, Department of Crop Sciences, University of Natural Resources and Life Sciences, Vienna, Austria.
| | - Holger Bohlmann
- Division of Plant Protection, Department of Crop Sciences, University of Natural Resources and Life Sciences, Vienna, Austria.
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13
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Galotta MF, Pugliese P, Gutiérrez-Boem FH, Veliz CG, Criado MV, Caputo C, Echeverria M, Roberts IN. Subtilase activity and gene expression during germination and seedling growth in barley. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 139:197-206. [PMID: 30908971 DOI: 10.1016/j.plaphy.2019.03.021] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2019] [Revised: 02/25/2019] [Accepted: 03/12/2019] [Indexed: 06/09/2023]
Abstract
Proteases play a main role in the mobilization of storage proteins during seed germination. Until today, there is little information about the involvement of serine proteases, particularly subtilases, in the germination of barley grains. The aims of the present work were to study the contribution of serine proteases to the total proteolytic activity induced during germination of barley grains and evaluate the specific involvement of subtilases in this process. Proteolytic activity assayed against azocasein in the presence of specific inhibitors, showed that serine proteases contributed between 10 and 20% of total activity along germination. Subtilase activity increased from day 1 after imbibition with a peak between days 4-5. Moreover, in vivo determination of subtilase activity in germinating grains revealed increasing activity along germination mainly localized in the seed endosperm and developing rootlets. Finally, the expression of 19 barley genes encoding subtilases was measured by real time PCR during germination. Three of the analyzed genes increased their expression along germination, five showed a transient induction, one was down-regulated, nine remained unchanged and one was not expressed. The present work demonstrates the involvement of subtilases in germination of barley grains and describes the positive association of eight subtilase genes to this process.
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Affiliation(s)
- María Florencia Galotta
- Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA), CONICET, Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453, C1417DSE, Buenos Aires, Argentina
| | - Paulina Pugliese
- Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA), CONICET, Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453, C1417DSE, Buenos Aires, Argentina
| | - Flavio H Gutiérrez-Boem
- Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA), CONICET, Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453, C1417DSE, Buenos Aires, Argentina
| | - Cintia G Veliz
- Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA), CONICET, Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453, C1417DSE, Buenos Aires, Argentina
| | - María Victoria Criado
- Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA), CONICET, Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453, C1417DSE, Buenos Aires, Argentina
| | - Carla Caputo
- Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA), CONICET, Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453, C1417DSE, Buenos Aires, Argentina
| | - Mariela Echeverria
- Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA), CONICET, Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453, C1417DSE, Buenos Aires, Argentina
| | - Irma N Roberts
- Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA), CONICET, Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453, C1417DSE, Buenos Aires, Argentina.
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Finkina EI, Melnikova DN, Bogdanov IV, Ovchinnikova TV. Peptides of the Innate Immune System of Plants. Part I. Structure, Biological Activity, and Mechanisms of Action. RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY 2019. [DOI: 10.1134/s1068162019010060] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Boonpa K, Tantong S, Weerawanich K, Panpetch P, Pringsulaka O, Roytrakul S, Sirikantaramas S. In Silico Analyses of Rice Thionin Genes and the Antimicrobial Activity of OsTHION15 Against Phytopathogens. PHYTOPATHOLOGY 2019; 109:27-35. [PMID: 30028233 DOI: 10.1094/phyto-06-17-0217-r] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Thionins are a family of antimicrobial peptides. We performed in silico expression analyses of the 44 rice (Oryza sativa) thionins (OsTHIONs). Modulated expression levels of OsTHIONs under different treatments suggest their involvement in many processes, including biotic, abiotic, and nutritional stress responses, and in hormone signaling. OsTHION15 (LOC_Os06g32600) was selected for further characterization based on several in silico analyses. OsTHION15 in O. sativa subsp. indica 'KDML 105' was expressed in all of the tissues and organs examined, including germinating seed, leaves, and roots of seedlings and mature plants, and inflorescences. To investigate the antimicrobial activity of OsTHION15, we produced a recombinant peptide in Escherichia coli Rosetta-gami (DE3). The recombinant OsTHION15 exhibited inhibitory activities toward rice-pathogenic bacteria such as Xanthomonas oryzae pv. oryzae and Pectobacterium carotovorum pv. atroseptica, with minimum inhibitory concentrations of 112.6 and 14.1 µg ml-1, respectively. A significant hyphal growth inhibition was also observed toward Fusarium oxysporum f. sp. cubense and Helminthosporium oryzae. In addition, we demonstrated the in planta antibacterial activity of this peptide in Nicotiana benthamiana against X. campestris pv. glycines. These activities suggest the possible application of OsTHION15 in plant disease control.
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Affiliation(s)
- Krissana Boonpa
- First author: Biotechnology Program, and second, third, fourth, and seventh authors: Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand; fifth author: Department of Microbiology, Faculty of Science, Srinakharinwirot University, Bangkok 10110, Thailand; sixth author: Genome Technology Research Unit, National Center for Genetic Engineering and Biotechnology, Klong Luang, Pathumthani, 12120, Thailand; and seventh author: Natural Product Biotechnology Research Unit, Chulalongkorn University
| | - Suparuk Tantong
- First author: Biotechnology Program, and second, third, fourth, and seventh authors: Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand; fifth author: Department of Microbiology, Faculty of Science, Srinakharinwirot University, Bangkok 10110, Thailand; sixth author: Genome Technology Research Unit, National Center for Genetic Engineering and Biotechnology, Klong Luang, Pathumthani, 12120, Thailand; and seventh author: Natural Product Biotechnology Research Unit, Chulalongkorn University
| | - Kamonwan Weerawanich
- First author: Biotechnology Program, and second, third, fourth, and seventh authors: Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand; fifth author: Department of Microbiology, Faculty of Science, Srinakharinwirot University, Bangkok 10110, Thailand; sixth author: Genome Technology Research Unit, National Center for Genetic Engineering and Biotechnology, Klong Luang, Pathumthani, 12120, Thailand; and seventh author: Natural Product Biotechnology Research Unit, Chulalongkorn University
| | - Pawinee Panpetch
- First author: Biotechnology Program, and second, third, fourth, and seventh authors: Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand; fifth author: Department of Microbiology, Faculty of Science, Srinakharinwirot University, Bangkok 10110, Thailand; sixth author: Genome Technology Research Unit, National Center for Genetic Engineering and Biotechnology, Klong Luang, Pathumthani, 12120, Thailand; and seventh author: Natural Product Biotechnology Research Unit, Chulalongkorn University
| | - Onanong Pringsulaka
- First author: Biotechnology Program, and second, third, fourth, and seventh authors: Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand; fifth author: Department of Microbiology, Faculty of Science, Srinakharinwirot University, Bangkok 10110, Thailand; sixth author: Genome Technology Research Unit, National Center for Genetic Engineering and Biotechnology, Klong Luang, Pathumthani, 12120, Thailand; and seventh author: Natural Product Biotechnology Research Unit, Chulalongkorn University
| | - Sittiruk Roytrakul
- First author: Biotechnology Program, and second, third, fourth, and seventh authors: Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand; fifth author: Department of Microbiology, Faculty of Science, Srinakharinwirot University, Bangkok 10110, Thailand; sixth author: Genome Technology Research Unit, National Center for Genetic Engineering and Biotechnology, Klong Luang, Pathumthani, 12120, Thailand; and seventh author: Natural Product Biotechnology Research Unit, Chulalongkorn University
| | - Supaart Sirikantaramas
- First author: Biotechnology Program, and second, third, fourth, and seventh authors: Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand; fifth author: Department of Microbiology, Faculty of Science, Srinakharinwirot University, Bangkok 10110, Thailand; sixth author: Genome Technology Research Unit, National Center for Genetic Engineering and Biotechnology, Klong Luang, Pathumthani, 12120, Thailand; and seventh author: Natural Product Biotechnology Research Unit, Chulalongkorn University
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Rochaix JD, Kim C, Apel W. Klaus Apel (1942-2017): a pioneer of photosynthesis research. PHOTOSYNTHESIS RESEARCH 2018; 137:153-159. [PMID: 29453665 DOI: 10.1007/s11120-018-0488-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2017] [Accepted: 02/05/2018] [Indexed: 06/08/2023]
Abstract
We present here a Tribute to Klaus Apel (1942-2017), a photosynthesis pioneer-an authority on plant molecular genetics-in five parts. The first section is a prologue. The second section deals with a chronological discussion of Apel's research life, prepared by the editor Govindjee; it is based on a website article at the Boyce Thompson Institute (BTI) by Patricia Waldron ( https://btiscience.org/explore-bti/news/post/bti-says-goodbye-klaus-apel/ ), as approved for use here by Keith C. Hannon and David Stern of BTI. The third section, which focuses on Apel's pioneering work on singlet oxygen-mediated EXECUTER-dependent signaling in plants, is written by two of us (J-DR and CK). The fourth section includes three selected reminiscences, one from BTI and two from ETH (Eidgenössische Technische Hochschule). This tribute ends with section five, which is a very brief presentation of Klaus Apel's personal life, by Wiebke Apel.
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Affiliation(s)
- Jean-David Rochaix
- Departments of Molecular Biology and Plant Biology, University of Geneva, 1205, Geneva, Switzerland.
| | - Chanhong Kim
- Shanghai Center for Plant Stress Biology and Center of Excellence in Molecular Plant Sciences, Chinese Academy of Sciences (CAS), Shanghai, 200032, China
| | - Wiebke Apel
- Hegemann Lab, Institute of Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, 10115, Berlin, Germany
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Schaller A, Stintzi A, Rivas S, Serrano I, Chichkova NV, Vartapetian AB, Martínez D, Guiamét JJ, Sueldo DJ, van der Hoorn RAL, Ramírez V, Vera P. From structure to function - a family portrait of plant subtilases. THE NEW PHYTOLOGIST 2018; 218:901-915. [PMID: 28467631 DOI: 10.1111/nph.14582] [Citation(s) in RCA: 82] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Accepted: 03/13/2017] [Indexed: 05/20/2023]
Abstract
Contents Summary 901 I. Introduction 901 II. Biochemistry and structure of plant SBTs 902 III. Phylogeny of plant SBTs and family organization 903 IV. Physiological roles of plant SBTs 905 V. Conclusions and outlook 911 Acknowledgements 912 References 912 SUMMARY: Subtilases (SBTs) are serine peptidases that are found in all three domains of life. As compared with homologs in other Eucarya, plant SBTs are more closely related to archaeal and bacterial SBTs, with which they share many biochemical and structural features. However, in the course of evolution, functional diversification led to the acquisition of novel, plant-specific functions, resulting in the present-day complexity of the plant SBT family. SBTs are much more numerous in plants than in any other organism, and include enzymes involved in general proteolysis as well as highly specific processing proteases. Most SBTs are targeted to the cell wall, where they contribute to the control of growth and development by regulating the properties of the cell wall and the activity of extracellular signaling molecules. Plant SBTs affect all stages of the life cycle as they contribute to embryogenesis, seed development and germination, cuticle formation and epidermal patterning, vascular development, programmed cell death, organ abscission, senescence, and plant responses to their biotic and abiotic environments. In this article we provide a comprehensive picture of SBT structure and function in plants.
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Affiliation(s)
- Andreas Schaller
- Institute of Plant Physiology and Biotechnology, University of Hohenheim, Stuttgart, 70593, Germany
| | - Annick Stintzi
- Institute of Plant Physiology and Biotechnology, University of Hohenheim, Stuttgart, 70593, Germany
| | - Susana Rivas
- Laboratoire des Interactions Plantes-Microorganismes, LIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, 31326, France
| | - Irene Serrano
- Laboratoire des Interactions Plantes-Microorganismes, LIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, 31326, France
| | - Nina V Chichkova
- Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119991, Russia
| | - Andrey B Vartapetian
- Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119991, Russia
| | - Dana Martínez
- Instituto de Fisiología Vegetal, Universidad Nacional de La Plata, La Plata, 1900, Argentina
| | - Juan J Guiamét
- Instituto de Fisiología Vegetal, Universidad Nacional de La Plata, La Plata, 1900, Argentina
| | - Daniela J Sueldo
- The Plant Chemetics Laboratory, Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK
| | - Renier A L van der Hoorn
- The Plant Chemetics Laboratory, Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK
| | - Vicente Ramírez
- Institute for Plant Cell Biology and Biotechnology, Heinrich-Heine University, Düsseldorf, 40225, Germany
| | - Pablo Vera
- Institute for Plant Molecular and Cell Biology, Universidad Politécnica de Valencia-CSIC, Valencia, 46022, Spain
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Taveira GB, Mello ÉO, Carvalho AO, Regente M, Pinedo M, de La Canal L, Rodrigues R, Gomes VM. Antimicrobial activity and mechanism of action of a thionin-like peptide from Capsicum annuum fruits and combinatorial treatment with fluconazole against Fusarium solani. Biopolymers 2018; 108. [PMID: 28073158 DOI: 10.1002/bip.23008] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2016] [Revised: 12/02/2016] [Accepted: 12/06/2016] [Indexed: 01/08/2023]
Abstract
Many Fusarium species are able to cause severe infections in plants as well as in animals and humans. Therefore, the discovery of new antifungal agents is of paramount importance. CaThi belongs to the thionins, which are cationic peptides with low molecular weights (∼5 kDa) that have toxic effects against various microorganisms. Herein, we study the mechanism of action of CaThi and its combinatory effect with fluconazole (FLC) against Fusarium solani. The mechanism of action of CaThi was studied by growth inhibition, viability, plasma membrane permeabilization, ROS induction, caspase activation, localization, and DNA binding capability, as assessed with Sytox green, DAB, FITC-VAD-FMK, CaThi-FITC, and gel shift assays. The combinatory effect of CaThi and FLC was assessed using a growth inhibition assay. Our results demonstrated that CaThi present a dose dependent activity and at the higher used concentration (50 µg mL-1 ) inhibits 83% of F. solani growth, prevents the formation of hyphae, permeabilizes membranes, induces endogenous H2 O2 , activates caspases, and localizes intracellularly. CaThi combined with FLC, at concentrations that alone do not inhibit F. solani, result in 100% death of F. solani when combined. The data presented in this study demonstrate that CaThi causes death of F. solani via apoptosis; an intracellular target may also be involved. Combined treatment using CaThi and FLC is a strong candidate for studies aimed at improved targeting of F. solani. This strategy is of particular interest because it minimizes selection of resistant microorganisms.
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Affiliation(s)
- Gabriel B Taveira
- Laboratório de Fisiologia e Bioquímica de Microrganismos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense, Campos dos Goytacazes, Rio De Janeiro, 28013-602, Brazil
| | - Érica O Mello
- Laboratório de Fisiologia e Bioquímica de Microrganismos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense, Campos dos Goytacazes, Rio De Janeiro, 28013-602, Brazil
| | - André O Carvalho
- Laboratório de Fisiologia e Bioquímica de Microrganismos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense, Campos dos Goytacazes, Rio De Janeiro, 28013-602, Brazil
| | - Mariana Regente
- Instituto de Investigaciones Biológicas, Universidad Nacional de Mar del Plata-CONICET, Funes 3250, Mar del Plata, 7600, Argentina
| | - Marcela Pinedo
- Instituto de Investigaciones Biológicas, Universidad Nacional de Mar del Plata-CONICET, Funes 3250, Mar del Plata, 7600, Argentina
| | - Laura de La Canal
- Instituto de Investigaciones Biológicas, Universidad Nacional de Mar del Plata-CONICET, Funes 3250, Mar del Plata, 7600, Argentina
| | - Rosana Rodrigues
- Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual do Norte Fluminense, Campos dos Goytacazes, Rio De Janeiro, 28013-602, Brazil
| | - Valdirene M Gomes
- Laboratório de Fisiologia e Bioquímica de Microrganismos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense, Campos dos Goytacazes, Rio De Janeiro, 28013-602, Brazil
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Escudero‐Martinez C, Morris J, Hedley P, Bos J. Barley transcriptome analyses upon interaction with different aphid species identify thionins contributing to resistance. PLANT, CELL & ENVIRONMENT 2017; 40:2628-2643. [PMID: 28452058 PMCID: PMC6084319 DOI: 10.1111/pce.12979] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Revised: 04/10/2017] [Accepted: 04/20/2017] [Indexed: 05/21/2023]
Abstract
Aphids are phloem-feeding insects that cause yield loss on a wide range of crops, including cereals such as barley. Whilst most aphid species are limited to one or few host species, some are able to reproduce on many plants belonging to different families. Interestingly, aphid probing behaviour can be observed on both host and non-host species, indicating that interactions take place at the molecular level that may impact host range. Here, we aimed to gain insight into the interaction of barley with aphid species differing in their ability to infest this crop by analysing transcriptional responses. Firstly, we determined colonization efficiency, settlement and probing behaviour for the aphid species Rhopalosiphum padi, Myzus persicae and Myzus cerasi, which defined host, poor-host and non-host interactions, respectively. Analyses of barley transcriptional responses revealed gene sets differentially regulated upon the different barley-aphid interactions and showed that the poor-host interaction with M. persicae resulted in the strongest regulation of genes. Interestingly, we identified several thionin genes strongly up-regulated upon interaction with M. persicae, and to a lesser extent upon R. padi interaction. Ectopic expression of two of these genes in Nicotiana benthamiana reduced host susceptibility to M. persicae, indicating that thionins contribute to defences against aphids.
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Affiliation(s)
- C.M. Escudero‐Martinez
- Cell and Molecular SciencesThe James Hutton InstituteDundeeDD2 5DAUK
- Division of Plant Sciences, School of Life SciencesUniversity of DundeeDundeeDD2 5DAUK
| | - J.A. Morris
- Cell and Molecular SciencesThe James Hutton InstituteDundeeDD2 5DAUK
| | - P.E. Hedley
- Cell and Molecular SciencesThe James Hutton InstituteDundeeDD2 5DAUK
| | - J.I.B. Bos
- Cell and Molecular SciencesThe James Hutton InstituteDundeeDD2 5DAUK
- Division of Plant Sciences, School of Life SciencesUniversity of DundeeDundeeDD2 5DAUK
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Kan J, Liu T, Ma N, Li H, Li X, Wang J, Zhang B, Chang Y, Lin J. Transcriptome analysis of Callery pear (Pyrus calleryana) reveals a comprehensive signalling network in response to Alternaria alternata. PLoS One 2017; 12:e0184988. [PMID: 28934298 PMCID: PMC5608294 DOI: 10.1371/journal.pone.0184988] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Accepted: 09/05/2017] [Indexed: 01/17/2023] Open
Abstract
The pear is an important temperate fruit worldwide that is produced by a group of species in the genus Pyrus. Callery pear (Pyrus calleryana Decne) is characterized by high resistance to multiple diseases, good adaptability, and high ornamental value, and is therefore widely planted in pear orchards for edible fruit production or as stock. Plant pathogens are a major threat to pear yield. Black spot disease, caused by the filamentous fungus Alternaria alternata, is one of the most serious diseases in pear. Elucidation of resistant genes to black spot disease is extremely important for understanding the underlying mechanisms as well as for the development of resistant cultivars. In this study, high-throughput single-strand RNA-sequencing was used to compare the transcriptome profiles of Callery pear leaves before and after A. alternata incubation for 7 days. The analysis yielded 73.3 Gb of clean data that were mapped onto the reference genome of the Chinese pear, and differentially expressed gene(DEG)s were identified with |log2FC| ≥ 1. Functional annotation demonstrated that black spot disease promoted great changes in the overall metabolism, and enrichment analysis of gene ontology terms showed that most of them are closely linked to signalling network and photosynthesis. Specifically, the genes included mainly transcription factors and genes involved in calcium signalling and ethylene and jasmonate pathways. Eight members of the ethylene response factor transcription factor gene family Group IX, including ERF1, ERF7, and ERF105, were up-regulated to 2.03–3.37-fold compared with CK, suggesting their role in the defence response to pathogen infection. Additionally, multiple transcription factors involved in biotic stresses, such as NAC78, NAC2, MYB44, and bHLH28, were up-regulated. Furthermore, we identified 144 long non-coding (lnc)RNAs, providing new insight into the involvement of lncRNAs in the response to black spot disease. Our study provides valuable data on the molecular genetics and functional genomic mechanisms of resistance to black spot disease in Callery pear. A good understanding of the molecular response to this disease will allow the development of durable and environmentally friendly control strategies.
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Affiliation(s)
- Jialiang Kan
- Institute of Horticulture, Jiangsu Academy of Agricultural Sciences/ Jiangsu Key Laboratory for Horticultural Crop Genetic improvement, Nanjing, China
| | - Tingli Liu
- Institute of Biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Na Ma
- Institute of Horticulture, Jiangsu Academy of Agricultural Sciences/ Jiangsu Key Laboratory for Horticultural Crop Genetic improvement, Nanjing, China
| | - Hui Li
- Institute of Horticulture, Jiangsu Academy of Agricultural Sciences/ Jiangsu Key Laboratory for Horticultural Crop Genetic improvement, Nanjing, China
| | - Xiaogang Li
- Institute of Horticulture, Jiangsu Academy of Agricultural Sciences/ Jiangsu Key Laboratory for Horticultural Crop Genetic improvement, Nanjing, China
| | - Jinyan Wang
- Institute of Biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Baolong Zhang
- Institute of Biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Youhong Chang
- Institute of Horticulture, Jiangsu Academy of Agricultural Sciences/ Jiangsu Key Laboratory for Horticultural Crop Genetic improvement, Nanjing, China
- * E-mail: (YC); (JL)
| | - Jing Lin
- Institute of Horticulture, Jiangsu Academy of Agricultural Sciences/ Jiangsu Key Laboratory for Horticultural Crop Genetic improvement, Nanjing, China
- * E-mail: (YC); (JL)
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Svoboda P, Janská A, Spiwok V, Prášil IT, Kosová K, Vítámvás P, Ovesná J. Global Scale Transcriptional Profiling of Two Contrasting Barley Genotypes Exposed to Moderate Drought Conditions: Contribution of Leaves and Crowns to Water Shortage Coping Strategies. FRONTIERS IN PLANT SCIENCE 2016; 7:1958. [PMID: 28083001 PMCID: PMC5187378 DOI: 10.3389/fpls.2016.01958] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2016] [Accepted: 12/09/2016] [Indexed: 05/07/2023]
Abstract
Drought is a serious threat for sustainable agriculture. Barley represents a species well adapted to environmental stresses including drought. To elucidate the adaptive mechanism of barley on transcriptional level we evaluated transcriptomic changes of two contrasting barley cultivars upon drought using the microarray technique on the level of leaves and crowns. Using bioinformatic tools, differentially expressed genes in treated vs. non-treated plants were identified. Both genotypes revealed tissue dehydration under drought conditions as shown at water saturation deficit and osmotic potential data; however, dehydration was more severe in Amulet than in drought-resistant Tadmor under the same ambient conditions. Performed analysis showed that Amulet enhanced expression of genes related to active plant growth and development, while Tadmor regarding the stimulated genes revealed conservative, water saving strategy. Common reactions of both genotypes and tissues included an induction of genes encoding several stress-responsive signaling proteins, transcription factors as well as effector genes encoding proteins directly involved in stress acclimation. In leaf, tolerant cultivar effectively stimulated mainly the expression of genes encoding proteins and enzymes involved in protein folding, sulfur metabolism, ROS detoxification or lipid biosynthesis and transport. The crown specific reaction of tolerant cultivar was an enhanced expression of genes encoding proteins and enzymes involved in cell wall lignification, ABRE-dependent abscisic acid (ABA) signaling, nucleosome remodeling, along with genes for numerous jasmonate induced proteins.
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Affiliation(s)
- Pavel Svoboda
- Division of Crop Genetics and Breeding, Crop Research InstitutePrague, Czechia
| | - Anna Janská
- Faculty of Science, Charles University in PraguePrague, Czechia
| | - Vojtěch Spiwok
- Faculty of Food and Biochemical Technology, University of Chemistry and TechnologyPrague, Czechia
| | - Ilja T. Prášil
- Division of Crop Genetics and Breeding, Crop Research InstitutePrague, Czechia
| | - Klára Kosová
- Division of Crop Genetics and Breeding, Crop Research InstitutePrague, Czechia
| | - Pavel Vítámvás
- Division of Crop Genetics and Breeding, Crop Research InstitutePrague, Czechia
| | - Jaroslava Ovesná
- Division of Crop Genetics and Breeding, Crop Research InstitutePrague, Czechia
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Novel Thionins from Black Seed (Nigella sativa L.) Demonstrate Antimicrobial Activity. Int J Pept Res Ther 2016. [DOI: 10.1007/s10989-016-9549-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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Hao G, Stover E, Gupta G. Overexpression of a Modified Plant Thionin Enhances Disease Resistance to Citrus Canker and Huanglongbing (HLB). FRONTIERS IN PLANT SCIENCE 2016; 7:1078. [PMID: 27499757 PMCID: PMC4956653 DOI: 10.3389/fpls.2016.01078] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Accepted: 07/08/2016] [Indexed: 05/19/2023]
Abstract
Huanglongbing (HLB or citrus greening disease) caused by Candidatus Liberibacter asiaticus (Las) is a great threat to the US citrus industry. There are no proven strategies to eliminate HLB disease and no cultivar has been identified with strong HLB resistance. Citrus canker is also an economically important disease associated with a bacterial pathogen (Xanthomonas citri). In this study, we characterized endogenous citrus thionins and investigated their expression in different citrus tissues. Since no HLB-resistant citrus cultivars have been identified, we attempted to develop citrus resistant to both HLB and citrus canker through overexpression of a modified plant thionin. To improve effectiveness for disease resistance, we modified and synthesized the sequence encoding a plant thionin and cloned into the binary vector pBinPlus/ARS. The construct was then introduced into Agrobacterium strain EHA105 for citrus transformation. Transgenic Carrizo plants expressing the modified plant thionin were generated by Agrobacterium-mediated transformation. Successful transformation and transgene gene expression was confirmed by molecular analysis. Transgenic Carrizo plants expressing the modified thionin gene were challenged with X. citri 3213 at a range of concentrations, and a significant reduction in canker symptoms and a decrease in bacterial growth were demonstrated compared to nontransgenic plants. Furthermore, the transgenic citrus plants were challenged with HLB via graft inoculation. Our results showed significant Las titer reduction in roots of transgenic Carrizo compared with control plants and reduced scion Las titer 12 months after graft inoculation. These data provide promise for engineering citrus disease resistance against HLB and canker.
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Affiliation(s)
- Guixia Hao
- U.S. Horticultural Research Laboratory, United States Department of Agriculture, Agricultural Research ServiceFort Pierce, FL, USA
| | - Ed Stover
- U.S. Horticultural Research Laboratory, United States Department of Agriculture, Agricultural Research ServiceFort Pierce, FL, USA
| | - Goutam Gupta
- Los Alamos National LaboratoryLos Alamos, NM, USA
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Parrott DL, Huang L, Fischer AM. Downregulation of a barley (Hordeum vulgare) leucine-rich repeat, non-arginine-aspartate receptor-like protein kinase reduces expression of numerous genes involved in plant pathogen defense. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2016; 100:130-140. [PMID: 26820571 DOI: 10.1016/j.plaphy.2016.01.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2015] [Accepted: 01/12/2016] [Indexed: 05/24/2023]
Abstract
Pattern recognition receptors represent a first line of plant defense against pathogens. Comparing the flag leaf transcriptomes of barley (Hordeum vulgare L.) near-isogenic lines varying in the allelic state of a locus controlling senescence, we have previously identified a leucine-rich repeat receptor-like protein kinase gene (LRR-RLK; GenBank accession: AK249842), which was strongly upregulated in leaves of early-as compared to late-senescing germplasm. Bioinformatic analysis indicated that this gene codes for a subfamily XII, non-arginine-aspartate (non-RD) LRR-RLK. Virus-induced gene silencing resulted in a two-fold reduction of transcript levels as compared to controls. Transcriptomic comparison of leaves from untreated plants, from plants treated with virus only without any plant sequences (referred to as 'empty virus' control), and from plants in which AK249842 expression was knocked down identified numerous genes involved in pathogen defense. These genes were strongly induced in 'empty virus' as compared to untreated controls, but their expression was significantly reduced (again compared to 'empty virus' controls) when AK249842 was knocked down, indicating that their expression partially depends on the LRR-RLK investigated here. Expression analysis, using datasets from BarleyBase/PLEXdb, demonstrated that AK249842 transcript levels are heavily influenced by the allelic state of the well-characterized mildew resistance a (Mla) locus, and that the gene is induced after powdery mildew and stem rust infection. Together, our data suggest that AK249842 is a barley pattern recognition receptor with a tentative role in defense against fungal pathogens, setting the stage for its full functional characterization.
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Affiliation(s)
- David L Parrott
- Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, MT 59717-3150, USA
| | - Li Huang
- Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, MT 59717-3150, USA
| | - Andreas M Fischer
- Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, MT 59717-3150, USA.
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Tam JP, Wang S, Wong KH, Tan WL. Antimicrobial Peptides from Plants. Pharmaceuticals (Basel) 2015; 8:711-57. [PMID: 26580629 PMCID: PMC4695807 DOI: 10.3390/ph8040711] [Citation(s) in RCA: 283] [Impact Index Per Article: 31.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2015] [Revised: 08/06/2015] [Accepted: 09/01/2015] [Indexed: 12/25/2022] Open
Abstract
Plant antimicrobial peptides (AMPs) have evolved differently from AMPs from other life forms. They are generally rich in cysteine residues which form multiple disulfides. In turn, the disulfides cross-braced plant AMPs as cystine-rich peptides to confer them with extraordinary high chemical, thermal and proteolytic stability. The cystine-rich or commonly known as cysteine-rich peptides (CRPs) of plant AMPs are classified into families based on their sequence similarity, cysteine motifs that determine their distinctive disulfide bond patterns and tertiary structure fold. Cystine-rich plant AMP families include thionins, defensins, hevein-like peptides, knottin-type peptides (linear and cyclic), lipid transfer proteins, α-hairpinin and snakins family. In addition, there are AMPs which are rich in other amino acids. The ability of plant AMPs to organize into specific families with conserved structural folds that enable sequence variation of non-Cys residues encased in the same scaffold within a particular family to play multiple functions. Furthermore, the ability of plant AMPs to tolerate hypervariable sequences using a conserved scaffold provides diversity to recognize different targets by varying the sequence of the non-cysteine residues. These properties bode well for developing plant AMPs as potential therapeutics and for protection of crops through transgenic methods. This review provides an overview of the major families of plant AMPs, including their structures, functions, and putative mechanisms.
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Affiliation(s)
- James P Tam
- School of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
| | - Shujing Wang
- School of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
- Department of Pharmacology and Pharmaceutical Sciences, School of Medicine, Tsinghua University, Beijing 100084, China.
| | - Ka H Wong
- School of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
| | - Wei Liang Tan
- School of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
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Plattner S, Gruber C, Stadlmann J, Widmann S, Gruber CW, Altmann F, Bohlmann H. Isolation and Characterization of a Thionin Proprotein-processing Enzyme from Barley. J Biol Chem 2015; 290:18056-18067. [PMID: 26013828 DOI: 10.1074/jbc.m115.647859] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2015] [Indexed: 01/17/2023] Open
Abstract
Thionins are plant-specific antimicrobial peptides that have been isolated from the endosperm and leaves of cereals, from the leaves of mistletoes, and from several other plant species. They are generally basic peptides with three or four disulfide bridges and a molecular mass of ~5 kDa. Thionins are produced as preproproteins consisting of a signal peptide, the thionin domain, and an acidic domain. Previously, only mature thionin peptides have been isolated from plants, and in addition to removal of the signal peptide, at least one cleavage processing step between the thionin and the acidic domain is necessary to release the mature thionin. In this work, we identified a thionin proprotein-processing enzyme (TPPE) from barley. Purification of the enzyme was guided by an assay that used a quenched fluorogenic peptide comprising the amino acid sequence between the thionin and the acidic domain of barley leaf-specific thionin. The barley TPPE was identified as a serine protease (BAJ93208) and expressed in Escherichia coli as a strep tag-labeled protein. The barley BTH6 thionin proprotein was produced in E. coli using the vector pETtrx1a and used as a substrate. We isolated and sequenced the BTH6 thionin from barley to confirm the N and C terminus of the peptide in planta. Using an in vitro enzymatic assay, the recombinant TPPE was able to process the quenched fluorogenic peptide and to cleave the acidic domain at least at six sites releasing the mature thionin from the proprotein. Moreover, it was found that the intrinsic three-dimensional structure of the BTH6 thionin domain prevents cleavage of the mature BTH6 thionin by the TPPE.
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Affiliation(s)
- Stephan Plattner
- Division of Plant Protection, Department of Crop Sciences, University of Natural Resources and Life Sciences, A-1190 Vienna
| | - Clemens Gruber
- Department of Chemistry, University of Natural Resources and Life Sciences, A-1190 Vienna
| | - Johannes Stadlmann
- Department of Chemistry, University of Natural Resources and Life Sciences, A-1190 Vienna
| | - Stefan Widmann
- Division of Plant Protection, Department of Crop Sciences, University of Natural Resources and Life Sciences, A-1190 Vienna
| | - Christian W Gruber
- Center for Physiology and Pharmacology, Medical University of Vienna, A-1090 Vienna, Austria
| | - Friedrich Altmann
- Department of Chemistry, University of Natural Resources and Life Sciences, A-1190 Vienna
| | - Holger Bohlmann
- Division of Plant Protection, Department of Crop Sciences, University of Natural Resources and Life Sciences, A-1190 Vienna.
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Plattner S, Gruber C, Altmann F, Bohlmann H. Self-processing of a barley subtilase expressed in E. coli. Protein Expr Purif 2014; 101:76-83. [PMID: 24927642 PMCID: PMC4148201 DOI: 10.1016/j.pep.2014.05.014] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2014] [Revised: 05/13/2014] [Accepted: 05/26/2014] [Indexed: 11/26/2022]
Abstract
The barley subtilase BAJ93208 has been expressed in the cytoplasm of E. coli C3030. Self processing occurred at the N and C-terminus. The Ser556Ala mutant was inactive and showed no self processing.
The barley protease BAJ93208 belongs to the subtilase family of serine proteases. We have expressed BAJ93208 in the cytoplasm of the Escherichiacoli strain SHuffle C3030 using a rhamnose-inducible promoter. The expression construct included a (His)6-tag at the N-terminus and a strep-tag at the C-terminus. Western blot analysis revealed that the protein was processed at the N- and C-terminus. To exclude that this processing was due to contaminating E. coli proteases, a mutated BAJ93208 protease was constructed. This inactive mutant was not processed, demonstrating that the processing was an autocatalytic process. To define the exact cleavage sites mass spectrometry was used which detected four differently processed versions of the protease. At the N-terminus, the self-processing removed the internal inhibitor and an additional 19 amino acids. At the C-terminus there was a cleavage site after Ala765 which also removed the strep-tag. This explained the inability to detect the purified (His)6-BAJ93208-strep protease with an anti-strep-tag antibody. Finally, an additional alanine was removed either at the N-terminus (Ala119) or at the C-terminus (Ala764).
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Affiliation(s)
- Stephan Plattner
- Division of Plant Protection, Department of Crop Sciences, University of Natural Resources and Life Sciences, Vienna, Austria.
| | - Clemens Gruber
- Department of Chemistry, University of Natural Resources and Life Sciences, Vienna, Austria.
| | - Friedrich Altmann
- Department of Chemistry, University of Natural Resources and Life Sciences, Vienna, Austria.
| | - Holger Bohlmann
- Division of Plant Protection, Department of Crop Sciences, University of Natural Resources and Life Sciences, Vienna, Austria.
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Heuberger AL, Broeckling CD, Kirkpatrick KR, Prenni JE. Application of nontargeted metabolite profiling to discover novel markers of quality traits in an advanced population of malting barley. PLANT BIOTECHNOLOGY JOURNAL 2014; 12:147-60. [PMID: 24119106 DOI: 10.1111/pbi.12122] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2013] [Revised: 08/15/2013] [Accepted: 08/20/2013] [Indexed: 05/02/2023]
Abstract
The process of breeding superior varieties for the agricultural industry is lengthy and expensive. Plant metabolites may act as markers of quality traits, potentially expediting the appraisal of experimental lines during breeding. Here, we evaluated the utility of metabolites as markers by assessing metabolic variation influenced by genetic and environmental factors in an advanced breeding setting and in relation to the phenotypic distribution of 20 quality traits. Nontargeted liquid chromatography-mass spectrometry metabolite profiling was performed on barley (Hordeum vulgare L.) grain and malt from 72 advanced malting barley lines grown at two distinct but climatically similar locations, with 2-row and 6-row barley as the main genetic factors. 27 420 molecular features were detected, and the metabolite and quality trait profiles were similarly influenced by genotype and environment; however, malt was more influenced by genotype compared with barley. An O2PLS model characterized molecular features and quality traits that covaried, and 1319 features associated with at least one of 20 quality traits. An indiscriminant MS/MS acquisition and novel data analysis method facilitated the identification of metabolites. The analysis described 216 primary and secondary metabolites that correlated with multiple quality traits and included amines, amino acids, alkaloids, polyphenolics and lipids. The mechanisms governing quality trait-metabolite associations were interpreted based on colocalization to genetic markers and their gene annotations. The results of this study support the hypothesis that metabolism and quality traits are co-influenced by relatively narrow genetic and environmental factors and illustrate the utility of grain metabolites as functional markers of quality traits.
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Affiliation(s)
- Adam L Heuberger
- Proteomics and Metabolomics Facility, Colorado State University, Fort Collins, CO, USA
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Gorjanović S. A Review: Biological and Technological Functions of Barley Seed Pathogenesis-Related Proteins (PRs). JOURNAL OF THE INSTITUTE OF BREWING 2012. [DOI: 10.1002/j.2050-0416.2009.tb00389.x] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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30
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He R, Kim MJ, Nelson W, Balbuena TS, Kim R, Kramer R, Crow JA, May GD, Thelen JJ, Soderlund CA, Gang DR. Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity. AMERICAN JOURNAL OF BOTANY 2012; 99:232-47. [PMID: 22301892 DOI: 10.3732/ajb.1100429] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
PREMISE OF THE STUDY The common reed (Phragmites australis), one of the most widely distributed of all angiosperms, uses its rhizomes (underground stems) to invade new territory, making it one of the most successful weedy species worldwide. Characterization of the rhizome transcriptome and proteome is needed to identify candidate genes and proteins involved in rhizome growth, development, metabolism, and invasiveness. METHODS We employed next-generation sequencing technologies including 454 and Illumina platforms to characterize the reed rhizome transcriptome and used quantitative proteomics techniques to identify the rhizome proteome. KEY RESULTS Combining 336514 Roche 454 Titanium reads and 103350802 Illumina paired-end reads in a de novo hybrid assembly yielded 124450 unique transcripts with an average length of 549 bp, of which 54317 were annotated. Rhizome-specific and differentially expressed transcripts were identified between rhizome apical tips (apical meristematic region) and rhizome elongation zones. A total of 1280 nonredundant proteins were identified and quantified using GeLC-MS/MS based label-free proteomics, where 174 and 77 proteins were preferentially expressed in the rhizome elongation zone and apical tip tissues, respectively. Genes involved in allelopathy and in controlling development and potentially invasiveness were identified. CONCLUSIONS In addition to being a valuable sequence and protein data resource for studying plant rhizome species, our results provide useful insights into identifying specific genes and proteins with potential roles in rhizome differentiation, development, and function.
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Affiliation(s)
- Ruifeng He
- Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164, USA
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Montesinos E, Badosa E, Cabrefiga J, Planas M, Feliu L, Bardají E. Antimicrobial Peptides for Plant Disease Control. From Discovery to Application. ACS SYMPOSIUM SERIES 2012. [DOI: 10.1021/bk-2012-1095.ch012] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Affiliation(s)
- Emilio Montesinos
- Laboratory of Plant Pathology, Institute of Food and Agricultural Technology-CIDSAV-XaRTA, University of Girona, 17071 Girona, Spain
- LIPPSO, Department of Chemistry; University of Girona, Campus Montilivi, 17071 Girona, Spain
| | - Esther Badosa
- Laboratory of Plant Pathology, Institute of Food and Agricultural Technology-CIDSAV-XaRTA, University of Girona, 17071 Girona, Spain
- LIPPSO, Department of Chemistry; University of Girona, Campus Montilivi, 17071 Girona, Spain
| | - Jordi Cabrefiga
- Laboratory of Plant Pathology, Institute of Food and Agricultural Technology-CIDSAV-XaRTA, University of Girona, 17071 Girona, Spain
- LIPPSO, Department of Chemistry; University of Girona, Campus Montilivi, 17071 Girona, Spain
| | - Marta Planas
- Laboratory of Plant Pathology, Institute of Food and Agricultural Technology-CIDSAV-XaRTA, University of Girona, 17071 Girona, Spain
- LIPPSO, Department of Chemistry; University of Girona, Campus Montilivi, 17071 Girona, Spain
| | - Lidia Feliu
- Laboratory of Plant Pathology, Institute of Food and Agricultural Technology-CIDSAV-XaRTA, University of Girona, 17071 Girona, Spain
- LIPPSO, Department of Chemistry; University of Girona, Campus Montilivi, 17071 Girona, Spain
| | - Eduard Bardají
- Laboratory of Plant Pathology, Institute of Food and Agricultural Technology-CIDSAV-XaRTA, University of Girona, 17071 Girona, Spain
- LIPPSO, Department of Chemistry; University of Girona, Campus Montilivi, 17071 Girona, Spain
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Krens FA, Schaart JG, Groenwold R, Walraven AEJ, Hesselink T, Thissen JTNM. Performance and long-term stability of the barley hordothionin gene in multiple transgenic apple lines. Transgenic Res 2011; 20:1113-23. [PMID: 21243525 PMCID: PMC3174370 DOI: 10.1007/s11248-011-9484-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2010] [Accepted: 01/05/2011] [Indexed: 11/28/2022]
Abstract
Introduction of sustainable scab resistance in elite apple cultivars is of high importance for apple cultivation when aiming at reducing the use of chemical crop protectants. Genetic modification (GM) allows the rapid introduction of resistance genes directly into high quality apple cultivars. Resistance genes can be derived from apple itself but genetic modification also opens up the possibility to use other, non-host resistance genes. A prerequisite for application is the long-term performance and stability of the gene annex trait in the field. For this study, we produced and selected a series of transgenic apple lines of two cultivars, i.e. ‘Elstar’ and ‘Gala’ in which the barley hordothionin gene (hth) was introduced. After multiplication, the GM hth-lines, non-GM susceptible and resistant controls and GM non-hth controls were planted in a random block design in a field trial in 40 replicates. Scab resistance was monitored after artificial inoculation (first year) and after natural infection (subsequent years). After the trial period, the level of expression of the hth gene was checked by quantitative RT-PCR. Four of the six GM hth apple lines proved to be significantly less susceptible to apple scab and this trait was found to be stable for the entire 4-year period. Hth expression at the mRNA level was also stable.
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Affiliation(s)
- Frans A Krens
- Wag UR Plant Breeding, Plant Science Group, Wageningen University and Research Centre, PO Box 16, 6700 AA Wageningen, The Netherlands.
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Ma X, Yang X, Zeng F, Yang L, Yu D, Ni H. Physcion, a natural anthraquinone derivative, enhances the gene expression of leaf-specific thionin of barley against Blumeria graminis. PEST MANAGEMENT SCIENCE 2010; 66:718-724. [PMID: 20205209 DOI: 10.1002/ps.1933] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
BACKGROUND Physcion is a key active ingredient of the ethanol extract from roots of Chinese rhubarb (Rheum officinale Baill.) that has been commercialised in China for controlling powdery mildews. The biological mechanism of action of physcion against the barley powdery mildew pathogen was studied using bioassay and microarray methods. RESULTS Bioassay indicated that physcion did not directly affect conidial germination of Blumeria graminis Speer f. sp. hordei Marchal, but significantly inhibited conidial germination in vivo. Challenge inoculation indicated that physcion induced localised resistance rather than systemic resistance against powdery mildew. Gene expression profiling of physcion-treated barley leaves detected four upregulated and five downregulated genes (ratio >or= 2.0 and P-value < 0.05) by using an Affymetrix Barley GeneChip. The five upregulated probe sequences blasted to the same barley leaf-specific thionin gene, with significant changes varying from 4.26 to 19.91-fold. All downregulated genes were defence-related, linked to peroxidase, oxalate oxidase, bsi1 protein and a pathogenesis-related protein. These changes varied from - 2.34 to - 2.96. Quantitative real-time PCR data confirmed that physcion enhanced the gene expression of leaf-specific thionin of barley. CONCLUSION Results indicated that physcion controls powdery mildew mainly through changing the expression of defence-related genes, and especially enhancing expression of leaf-specific thionin in barley leaves.
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Affiliation(s)
- Xingxia Ma
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
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Andrade LBDS, Oliveira AS, Ribeiro JKC, Kiyota S, Vasconcelos IM, de Oliveira JTA, de Sales MP. Effects of a novel pathogenesis-related class 10 (PR-10) protein from Crotalaria pallida Roots with papain inhibitory activity against root-knot nematode Meloidogyne incognita. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2010; 58:4145-52. [PMID: 20199085 DOI: 10.1021/jf9044556] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
A novel pathogenesis-related class 10 (PR-10) protein with papain inhibitory activity, named CpPRI, was purified from Crotalaria pallida roots by ammonium sulfate precipitation followed by three reverse-phase high-performance liquid chromatographies (HPLCs). CpPRI is made up of a single polypeptide chain with a M(r) of 15 kDa, as determined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). This protein exhibited a K(i) value of 1.8 x 10(-9) M and operates via a noncompetitive inhibition mechanism. The alignment of the N-terminal amino acid sequence of CpPRI with other proteins revealed its identity with PR-10 proteins. CpPRI acts against digestive proteinase from root-knot nematode Meloidogyne incognita and demonstrated nematostatic and nematicide effects on this parasite in bioassays. In a localization study, fluorescein-5-isothiocyanate (FITC)-CpPRI was observed to internalize and diffuse over the entire J2 body after 6 h of incubation. This fact could explain the natural tolerance of this plant species to nematodes.
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Affiliation(s)
- Lúcia Betânia da S Andrade
- Centro de Ciencias Agrarias e Biologicas, Universidade Estadual Vale do Acarau (UVA), Sobral, Ceara (CE), Brazil
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Holz CM, Stahl U. Ribosomally synthesized antimicrobial peptides in prokaryotic and eukaryotic organisms. FOOD BIOTECHNOL 2009. [DOI: 10.1080/08905439509549888] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Hégrová B, Farková M, Macuchová S, Havel J, Preisler J. Investigation of relationships between barley stress peptides and beer gushing using SDS-PAGE and MS screening. J Sep Sci 2009; 32:4247-53. [DOI: 10.1002/jssc.200900510] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Choi Y, Jeong CW, Ohr H, Song SK, Choi YD, Lee JS. Developmental and environmental regulation of soybean SE60 gene expression during embryogenesis and germination. PLANTA 2009; 230:959-71. [PMID: 19690885 DOI: 10.1007/s00425-009-0999-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2009] [Accepted: 08/01/2009] [Indexed: 05/28/2023]
Abstract
Soybean SE60 belongs to the gamma-thionin family of proteins. We recently demonstrated that SE60 plays a role in defense during soybean development. Here, we show that SE60 is expressed in a tissue-specific and developmentally regulated manner. The expression of SE60 is distinct from that of the glycinin (Gy2) and extensin (SbHRGP3) genes of soybean during embryogenesis and germination. A SE60::GUS(-809) transgene, comprising -809 bp of the 5'-flanking region of SE60 fused to the GUS reporter gene, was expressed specifically in developing embryos, but not in the endosperms, from the globular stage of transgenic tobacco and Arabidopsis seeds. Furthermore, light affected the SE60::GUS(-809) expression pattern in germinating seedlings. Electrophoretic mobility shift assay (EMSA) revealed that soybean nuclear proteins as well as E. coli-expressed SB16, a high mobility group protein (HMG), were bound sequence-specifically to the fragment containing AT-rich motifs identified in the SE60 promoter. Interestingly, the soybean nuclear proteins binding to the two G-boxes and RY repeat were prevalent in seeds of 2-4 mm in size. In contrast, the nuclear proteins binding to the AT-rich motif and SE60 RNA expression were more prominent in seeds of 4-6 mm in size. Therefore, we propose that factors binding to the G-boxes or RY repeat initiate SE60 expression during embryogenesis.
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Affiliation(s)
- Yeonhee Choi
- School of Biological Sciences, Seoul National University, Seoul 151-747, Korea.
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Singlet oxygen-dependent translational control in the tigrina-d.12 mutant of barley. Proc Natl Acad Sci U S A 2009; 106:13112-7. [PMID: 19620736 DOI: 10.1073/pnas.0903522106] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The tigrina (tig)-d.12 mutant of barley is impaired in the negative control limiting excess protochlorophyllide (Pchlide) accumulation in the dark. Upon illumination, Pchlide operates as photosensitizer and triggers singlet oxygen production and cell death. Here, we show that both Pchlide and singlet oxygen operate as signals that control gene expression and metabolite accumulation in tig-d.12 plants. In vivo labeling, Northern blotting, polysome profiling, and protein gel blot analyses revealed a selective suppression of synthesis of the small and large subunits of ribulose-1,5-bisphosphate carboxylase/oxygenase (RBCSs and RBCLs), the major light-harvesting chlorophyll a/b-binding protein of photosystem II (LHCB2), as well as other chlorophyll-binding proteins, in response to singlet oxygen. In part, these effects were caused by an arrest in translation initiation of photosynthetic transcripts at 80S cytoplasmic ribosomes. The observed changes in translation correlated with a decline in the phosphorylation level of ribosomal protein S6. At later stages, ribosome dissociation occurred. Together, our results identify translation as a major target of singlet oxygen-dependent growth control and cell death in higher plants.
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Delp G, Gradin T, Ahman I, Jonsson LMV. Microarray analysis of the interaction between the aphid Rhopalosiphum padi and host plants reveals both differences and similarities between susceptible and partially resistant barley lines. Mol Genet Genomics 2008; 281:233-48. [PMID: 19085010 DOI: 10.1007/s00438-008-0409-3] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2008] [Accepted: 11/25/2008] [Indexed: 12/01/2022]
Abstract
The bird cherry-oat aphid (Rhopalosiphum padi L.) is an important pest on cereals causing plant growth reduction without specific leaf symptoms. Breeding of barley (Hordeum vulgare L.) for R. padi resistance shows that there are several resistance genes, reducing aphid growth. To identify candidate sequences for resistance-related genes, we performed microarray analysis of gene expression after aphid infestation in two susceptible and two partially resistant barley genotypes. One of the four lines is a descendant of two of the other genotypes. There were large differences in gene induction between the four lines, indicating substantial variation in response even between closely related genotypes. Genes induced in aphid-infested tissue were mainly related to defence, primary metabolism and signalling. Only 24 genes were induced in all lines, none of them related to oxidative stress or secondary metabolism. Few genes were down-regulated, with none being common to all four lines. There were differences in aphid-induced gene regulation between resistant and susceptible lines. Results from control plants without aphids also revealed differences in constitutive gene expression between the two types of lines. Candidate sequences for induced and constitutive resistance factors have been identified, among them a proteinase inhibitor, a serine/threonine kinase and several thionins.
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Affiliation(s)
- Gabriele Delp
- School of Life Sciences, Södertörn University, 141 89, Huddinge, Sweden.
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Sels J, Mathys J, De Coninck BMA, Cammue BPA, De Bolle MFC. Plant pathogenesis-related (PR) proteins: a focus on PR peptides. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2008; 46:941-50. [PMID: 18674922 DOI: 10.1016/j.plaphy.2008.06.011] [Citation(s) in RCA: 448] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2008] [Revised: 06/11/2008] [Accepted: 06/14/2008] [Indexed: 05/18/2023]
Abstract
The novel classes of plant pathogenesis-related (PR) proteins identified during the last decade also include novel peptide families. This review specifically focuses on these pathogenesis-related peptides, including proteinase inhibitors (PR-6 family), plant defensins (PR-12 family), thionins (PR-13 family) and lipid transfer proteins (PR-14 family). For each family of PR peptides, the general features concerning occurrence, expression and possible functions of their members are described. Next, more specifically the occurrence of each PR peptide family in the model plant Arabidopsis thaliana is discussed. Single-gene studies performed on particular gene members of a PR peptide family are reported. In addition, expression data of yet undescribed gene members of that particular PR peptide family are presented by consultation of publicly available micro-array databases. Finally an update is provided on the potential role of these PR peptides in A. thaliana, with a focus on their possible involvement in plant defense.
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Affiliation(s)
- Jan Sels
- Centre of Microbial and Plant Genetics, Katholieke Universiteit Leuven, Kasteelpark Arenberg 20, B-3001 Heverlee, Belgium
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41
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Vernon LP. Pyrularia Thionin: Physical Properties, Biological Responses and Comparison to Other Thionins and Cardiotoxin. ACTA ACUST UNITED AC 2008. [DOI: 10.3109/15569549209115819] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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42
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Abstract
Extracellular plant peptides perform a large variety of functions, including signalling and defence. Intracellular peptides often have physiological functions or may merely be the products of general proteolysis. Plant peptides have been identified and, in part, functionally characterized through biochemical and genetic studies, which are lengthy and in some cases impractical. Peptidomics is a branch of proteomics that has been developed over the last 5 years, and has been used mainly to study neuropeptides in animals and the degradome of proteases. Peptidomics is a fast, efficient methodology that can detect minute and transient amounts of peptides and identify their post-translational modifications. This review describes known plant peptides and introduces the use of peptidomics for the detection of novel plant peptides.
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Affiliation(s)
- Naser Farrokhi
- National Institute of Genetic Engineering and Biotechnology, Pajoohesh Blvd., Tehran-Karaj Highway, 17th Km., Tehran, Iran.
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43
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Sulfur-Containing Secondary Metabolites and Their Role in Plant Defense. SULFUR METABOLISM IN PHOTOTROPHIC ORGANISMS 2008. [DOI: 10.1007/978-1-4020-6863-8_11] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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44
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Cammue BP, De Bolle MF, Schoofs HM, Terras FR, Thevissen K, Osborn RW, Rees SB, Broekaert WF. Gene-encoded antimicrobial peptides from plants. CIBA FOUNDATION SYMPOSIUM 2007; 186:91-101; discussion 101-6. [PMID: 7768160 DOI: 10.1002/9780470514658.ch6] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
On the basis of an extensive screening of seeds from various plant species, we have isolated and characterized several different antimicrobial peptides. They were all typified by having a broad antifungal activity spectrum, a relatively low molecular weight (3-14 kDa), a high cysteine content and a high isoelectric point (pI > 10). With respect to their amino acid sequence, these peptides can be classified into six structural classes. Synergistic enhancement (up to 73-fold) of antimicrobial activity was demonstrated in some combinations of peptides belonging to different classes. cDNA clones corresponding to different antifungal peptides were isolated and used to transform tobacco plants. Extracts of these transgenic plants showed higher (up to 16-fold) antifungal activity than untransformed control plants. Such antimicrobial peptides may find applications in molecular breeding of plants with increased disease resistance.
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Affiliation(s)
- B P Cammue
- F. A. Janssens Laboratory of Genetics, Catholic University of Leuven, Belgium
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45
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Kuć J. Compounds from plants that regulate or participate in disease resistance. CIBA FOUNDATION SYMPOSIUM 2007; 154:213-24; discussion 224-8. [PMID: 2086038 DOI: 10.1002/9780470514009.ch15] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Disease resistance is multifactorial. The response phase includes: synthesis of phytoalexins, i.e. low molecular weight antimicrobial compounds which accumulate at sites of infection; systemically produced enzymes which degrade pathogens, e.g. chitinases, beta-1,3-glucanases and proteases; systemically produced enzymes which generate antimicrobial compounds and protective biopolymers, e.g. peroxidases and phenoloxidases; biopolymers which restrict the spread of pathogens, e.g. hydroxyproline-rich glycoproteins, lignin, callose; and compounds which regulate the induction and/or activity of the defence compounds, e.g. elicitors of plant and microbial origin, immunity signals from immunized plants and compounds which release immunity signals. Disease resistance in plants is not determined by the presence or absence of genes for resistance mechanisms, it is determined by the speed and degree of gene expression and the activity of the gene products. It is likely, therefore, that all plants have the genetic potential for resistance. This potential can be expressed systemically (immunization) after restricted inoculation with pathogens, attenuated pathogens or selected non-pathogens, or treatment with chemical substances that are produced by immunized plants or chemicals which release such signals. Immunization is effective against diseases caused by fungi, bacteria and viruses, and it has been successfully tested in the laboratory and field. Advances in science have provided information and technology to enhance resistance to plant pests. Pesticides are part of this technology, but they also contribute to a complex world problem which threatens our environment and hence our survival. The future will see the restriction of pesticide use and a greater reliance on resistant plants generated using immunization and other biological control technologies, genetic engineering and classical plant breeding. However, as with past and current technology, we will have created unique problems. The survival of our planet depends upon anticipating these problems and meeting the challenge of their solution.
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Affiliation(s)
- J Kuć
- Department of Plant Pathology, University of Kentucky, Lexington 40546
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46
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Lin P, Xia L, Ng TB. First isolation of an antifungal lipid transfer peptide from seeds of a Brassica species. Peptides 2007; 28:1514-9. [PMID: 17692430 DOI: 10.1016/j.peptides.2007.06.028] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/04/2007] [Revised: 06/26/2007] [Accepted: 06/28/2007] [Indexed: 10/23/2022]
Abstract
An antifungal peptide with a molecular mass of 9412 and an N-terminal sequence exhibiting notable homology to those of lipid transfer proteins was isolated from seeds of the vegetable Brassica campestris. The purification protocol entailed ion exchange chromatography on Q-Sepharose, affinity chromatography on Affi-gel blue gel, ion exchange chromatography by fast protein liquid chromatography (FPLC) on Mono S, and gel filtration by FPLC on a Superdex peptide column. The antifungal peptide was adsorbed on Affi-gel blue gel and Mono S. It inhibited mycelial growth in Fusarium oxysporum and Mycosphaerella arachidicola with an IC(50) value of 8.3 microM and 4.5 microM, respectively. It exhibited dose-dependent binding to lyso-alpha-lauroyl phosphatidylcholine. The present findings constitute the first report on a non-specific lipid transfer protein from the seeds of a Brassica species.
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Affiliation(s)
- Peng Lin
- Department of Biochemistry, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China
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47
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Mackintosh CA, Lewis J, Radmer LE, Shin S, Heinen SJ, Smith LA, Wyckoff MN, Dill-Macky R, Evans CK, Kravchenko S, Baldridge GD, Zeyen RJ, Muehlbauer GJ. Overexpression of defense response genes in transgenic wheat enhances resistance to Fusarium head blight. PLANT CELL REPORTS 2007; 26:479-88. [PMID: 17103001 PMCID: PMC1824786 DOI: 10.1007/s00299-006-0265-8] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2006] [Revised: 09/27/2006] [Accepted: 09/30/2006] [Indexed: 05/12/2023]
Abstract
Fusarium head blight (FHB) of wheat, caused by Fusarium graminearum and other Fusarium species, is a major disease problem for wheat production worldwide. To combat this problem, large-scale breeding efforts have been established. Although progress has been made through standard breeding approaches, the level of resistance attained is insufficient to withstand epidemic conditions. Genetic engineering provides an alternative approach to enhance the level of resistance. Many defense response genes are induced in wheat during F. graminearum infection and may play a role in reducing FHB. The objectives of this study were (1) to develop transgenic wheat overexpressing the defense response genes alpha-1-purothionin, thaumatin-like protein 1 (tlp-1), and beta-1,3-glucanase; and (2) to test the resultant transgenic wheat lines against F. graminearum infection under greenhouse and field conditions. Using the wheat cultivar Bobwhite, we developed one, two, and four lines carrying the alpha-1-purothionin, tlp-1, and beta-1,3-glucanase transgenes, respectively, that had statistically significant reductions in FHB severity in greenhouse evaluations. We tested these seven transgenic lines under field conditions for percent FHB disease severity, deoxynivalenol (DON) mycotoxin accumulation, and percent visually scabby kernels (VSK). Six of the seven lines differed from the nontransgenic parental Bobwhite line for at least one of the disease traits. A beta-1,3-glucanase transgenic line had enhanced resistance, showing lower FHB severity, DON concentration, and percent VSK compared to Bobwhite. Taken together, the results showed that overexpression of defense response genes in wheat could enhance the FHB resistance in both greenhouse and field conditions.
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Affiliation(s)
- Caroline A. Mackintosh
- Department of Agronomy and Plant Genetics, University of Minnesota, 411 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 USA
| | - Janet Lewis
- Department of Agronomy and Plant Genetics, University of Minnesota, 411 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 USA
| | - Lorien E. Radmer
- Department of Agronomy and Plant Genetics, University of Minnesota, 411 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 USA
| | - Sanghyun Shin
- Department of Agronomy and Plant Genetics, University of Minnesota, 411 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 USA
| | - Shane J. Heinen
- Department of Agronomy and Plant Genetics, University of Minnesota, 411 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 USA
| | - Lisa A. Smith
- Department of Agronomy and Plant Genetics, University of Minnesota, 411 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 USA
| | - Meagen N. Wyckoff
- Department of Agronomy and Plant Genetics, University of Minnesota, 411 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 USA
| | - Ruth Dill-Macky
- Department of Plant Pathology, University of Minnesota, 495 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 USA
| | - Conrad K. Evans
- Department of Biology, Utah State University, UMC 5305, Logan, UT 84322 USA
| | - Sasha Kravchenko
- Department of Crop and Soil Sciences, Michigan State University, East Lansing, MI 48824 USA
| | - Gerald D. Baldridge
- Department of Plant Pathology, University of Minnesota, 495 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 USA
| | - Richard J. Zeyen
- Department of Plant Pathology, University of Minnesota, 495 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 USA
| | - Gary J. Muehlbauer
- Department of Agronomy and Plant Genetics, University of Minnesota, 411 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 USA
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48
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Oard SV, Enright FM. Expression of the antimicrobial peptides in plants to control phytopathogenic bacteria and fungi. PLANT CELL REPORTS 2006; 25:561-72. [PMID: 16456649 DOI: 10.1007/s00299-005-0102-5] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2005] [Revised: 11/01/2005] [Accepted: 11/20/2005] [Indexed: 05/06/2023]
Abstract
Three antimicrobial peptides exhibiting in vitro antifungal activity were expressed in Arabidopsis to compare their in planta activity. Beta-Purothionin, cecropin B, and phor21 were expressed under an endogenous promoter with moderate-level activity and excreted extracellularly. Expression of beta-purothionin rendered the greatest antibacterial and antifungal resistance while cecropin B enhanced only antibacterial activity and phor21 did not improve antimicrobial resistance. The transgenic beta-purothionin arrested fungal growth on leaf surfaces and infection of stomata. Leaf extracts from plants producing beta-purothionin and cecropin B displayed membrane permeabilizing activity. The in planta antimicrobial activity of the tested peptides was consistent with previously reported in vitro experiments. The expression strategy allowed enhanced antifungal resistance without high-level transgene expression.
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Affiliation(s)
- S V Oard
- LSU AgCenter Biotechnology Laboratory, Louisiana State University, 115 Wilson Bldg., Baton Rouge, LA 70803, USA.
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49
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Chan YL, Prasad V, Chen KH, Liu PC, Chan MT, Cheng CP. Transgenic tomato plants expressing an Arabidopsis thionin (Thi2.1) driven by fruit-inactive promoter battle against phytopathogenic attack. PLANTA 2005; 221:386-93. [PMID: 15657715 DOI: 10.1007/s00425-004-1459-3] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2004] [Accepted: 11/22/2004] [Indexed: 05/06/2023]
Abstract
Tomato is one of the most important crop plants; however, attacks by pathogens can cause serious losses in production. In this report, we explore the potential of using the Arabidopsis thionin (Thi2.1) gene to genetically engineer enhanced resistance to multiple diseases in tomato. Potential thionin toxicity in fruits was negated by the use of a fruit-inactive promoter to drive the Thi2.1 gene. In transgenic lines containing RB7/Thi2.1, constitutive Thi2.1 expression was detected in roots and incidentally in leaves, but not in fruits. Disease assays revealed that the transgenic lines that were tested conferred significant levels of enhanced resistance to bacterial wilt (BW) and Fusarium wilt (FW). Further studies indicated that BW disease progression in transgenic lines was delayed by a systemic suppression of bacterial multiplication. By adopting a safe genetic engineering strategy, the present investigation is another step forward demonstrating thionin practicality in crop protection.
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Affiliation(s)
- Yuan-Li Chan
- Institute of BioAgricultural Sciences, Academia Sinica, Taipei, 115, Taiwan
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50
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Wang SY, Wu JH, Ng TB, Ye XY, Rao PF. A non-specific lipid transfer protein with antifungal and antibacterial activities from the mung bean. Peptides 2004; 25:1235-42. [PMID: 15350690 DOI: 10.1016/j.peptides.2004.06.004] [Citation(s) in RCA: 98] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/14/2004] [Revised: 06/04/2004] [Accepted: 06/07/2004] [Indexed: 10/26/2022]
Abstract
A non-specific lipid transfer peptide (nsLTP) with antimicrobial activity was isolated from the mung bean (Phaseolus mungo) seeds. The procedure entailed aqueous extraction, ion exchange chromatography on CM-Sephadex and high performance liquid chromatography (HPLC) on POROS-HS-20. The peptide exhibited a molecular mass of 9.03 kDa in mass spectrometry. It exerted antifungal action toward Fusarium solani, Fusarium oxysporum, Pythium aphanidermatum and Sclerotium rolfsii, and antibacterial action against Staphylococcus aureus but not against Salmonella typhimurium. The lipid binding of this peptide was very similar to that of a previously described lipid transfer protein extracted from wheat seeds and maize seeds, indicating that it possessed lipid transfer activity. The present findings add to the scarcity of the literature on leguminous nsLTPs.
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Affiliation(s)
- Shao Yun Wang
- Insititute of Biotechnology, Fuzhou University, Fuzhou 350002, China
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