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Zou H, Zhang NN, Pan Q, Zhang JH, Chen J, Wei GH. Hydrogen Sulfide Promotes Nodulation and Nitrogen Fixation in Soybean-Rhizobia Symbiotic System. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2019; 32:972-985. [PMID: 31204904 DOI: 10.1094/mpmi-01-19-0003-r] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The rhizobium-legume symbiotic system is crucial for nitrogen cycle balance in agriculture. Hydrogen sulfide (H2S), a gaseous signaling molecule, may regulate various physiological processes in plants. However, whether H2S has regulatory effect in this symbiotic system remains unknown. Herein, we investigated the possible role of H2S in the symbiosis between soybean (Glycine max) and rhizobium (Sinorhizobium fredii). Our results demonstrated that an exogenous H2S donor (sodium hydrosulfide [NaHS]) treatment promoted soybean growth, nodulation, and nitrogenase (Nase) activity. Western blotting analysis revealed that the abundance of Nase component nifH was increased by NaHS treatment in nodules. Quantitative real-time polymerase chain reaction data showed that NaHS treatment upregulated the expressions of symbiosis-related genes nodA, nodC, and nodD of S. fredii. In addition, expression of soybean nodulation marker genes, including early nodulin 40 (GmENOD40), ERF required for nodulation (GmERN), nodulation signaling pathway 2b (GmNSP2b), and nodulation inception genes (GmNIN1a, GmNIN2a, and GmNIN2b), were upregulated. Moreover, the expressions of glutamate synthase (GmGOGAT), asparagine synthase (GmAS), nitrite reductase (GmNiR), ammonia transporter (GmSAT1), leghemoglobin (GmLb), and nifH involved in nitrogen metabolism were upregulated in NaHS-treated soybean roots and nodules. Together, our results suggested that H2S may act as a positive signaling molecule in the soybean-rhizobia symbiotic system and enhance the system's nitrogen fixation ability.
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Affiliation(s)
- Hang Zou
- 1State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, PR China
- 2Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, Yangling, Shaanxi 712100, PR China
| | - Ni-Na Zhang
- 3State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, P.R. China
| | - Qing Pan
- 1State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, PR China
- 2Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, Yangling, Shaanxi 712100, PR China
| | - Jian-Hua Zhang
- 4School of Life Sciences and State Key Laboratory of Agrobiotechnology, the Chinese University of Hong Kong, Hong Kong
- 5Department of Biology, Hong Kong Baptist University, Hong Kong
| | - Juan Chen
- 1State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, PR China
- 3State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, P.R. China
- 4School of Life Sciences and State Key Laboratory of Agrobiotechnology, the Chinese University of Hong Kong, Hong Kong
| | - Ge-Hong Wei
- 1State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, PR China
- 2Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, Yangling, Shaanxi 712100, PR China
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Ferguson BJ, Li D, Hastwell AH, Reid DE, Li Y, Jackson SA, Gresshoff PM. The soybean (Glycine max) nodulation-suppressive CLE peptide, GmRIC1, functions interspecifically in common white bean (Phaseolus vulgaris), but not in a supernodulating line mutated in the receptor PvNARK. PLANT BIOTECHNOLOGY JOURNAL 2014; 12:1085-97. [PMID: 25040127 DOI: 10.1111/pbi.12216] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2014] [Revised: 05/21/2014] [Accepted: 05/27/2014] [Indexed: 05/06/2023]
Abstract
Legume plants regulate the number of nitrogen-fixing root nodules they form via a process called the Autoregulation of Nodulation (AON). Despite being one of the most economically important and abundantly consumed legumes, little is known about the AON pathway of common bean (Phaseolus vulgaris). We used comparative- and functional-genomic approaches to identify central components in the AON pathway of common bean. This includes identifying PvNARK, which encodes a LRR receptor kinase that acts to regulate root nodule numbers. A novel, truncated version of the gene was identified directly upstream of PvNARK, similar to Medicago truncatula, but not seen in Lotus japonicus or soybean. Two mutant alleles of PvNARK were identified that cause a classic shoot-controlled and nitrate-tolerant supernodulation phenotype. Homeologous over-expression of the nodulation-suppressive CLE peptide-encoding soybean gene, GmRIC1, abolished nodulation in wild-type bean, but had no discernible effect on PvNARK-mutant plants. This demonstrates that soybean GmRIC1 can function interspecifically in bean, acting in a PvNARK-dependent manner. Identification of bean PvRIC1, PvRIC2 and PvNIC1, orthologues of the soybean nodulation-suppressive CLE peptides, revealed a high degree of conservation, particularly in the CLE domain. Overall, our work identified four new components of bean nodulation control and a truncated copy of PvNARK, discovered the mutation responsible for two supernodulating bean mutants and demonstrated that soybean GmRIC1 can function in the AON pathway of bean.
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Affiliation(s)
- Brett J Ferguson
- Centre for Integrative Legume Research, School of Agricultural and Food Sciences, The University of Queensland, St. Lucia, Brisbane, Qld, Australia
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Biswas B, Gresshoff PM. The role of symbiotic nitrogen fixation in sustainable production of biofuels. Int J Mol Sci 2014; 15:7380-97. [PMID: 24786096 PMCID: PMC4057678 DOI: 10.3390/ijms15057380] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2014] [Revised: 03/25/2014] [Accepted: 03/25/2014] [Indexed: 12/20/2022] Open
Abstract
With the ever-increasing population of the world (expected to reach 9.6 billion by 2050), and altered life style, comes an increased demand for food, fuel and fiber. However, scarcity of land, water and energy accompanied by climate change means that to produce enough to meet the demands is getting increasingly challenging. Today we must use every avenue from science and technology available to address these challenges. The natural process of symbiotic nitrogen fixation, whereby plants such as legumes fix atmospheric nitrogen gas to ammonia, usable by plants can have a substantial impact as it is found in nature, has low environmental and economic costs and is broadly established. Here we look at the importance of symbiotic nitrogen fixation in the production of biofuel feedstocks; how this process can address major challenges, how improving nitrogen fixation is essential, and what we can do about it.
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Affiliation(s)
- Bandana Biswas
- Centre for Integrative Legume Research (CILR), the University of Queensland, St Lucia Brisbane, QLD 4072, Australia.
| | - Peter M Gresshoff
- Centre for Integrative Legume Research (CILR), the University of Queensland, St Lucia Brisbane, QLD 4072, Australia.
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Afonso-Grunz F, Molina C, Hoffmeier K, Rycak L, Kudapa H, Varshney RK, Drevon JJ, Winter P, Kahl G. Genome-based analysis of the transcriptome from mature chickpea root nodules. FRONTIERS IN PLANT SCIENCE 2014; 5:325. [PMID: 25071808 PMCID: PMC4093793 DOI: 10.3389/fpls.2014.00325] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2014] [Accepted: 06/21/2014] [Indexed: 05/07/2023]
Abstract
Symbiotic nitrogen fixation (SNF) in root nodules of grain legumes such as chickpea is a highly complex process that drastically affects the gene expression patterns of both the prokaryotic as well as eukaryotic interacting cells. A successfully established symbiotic relationship requires mutual signaling mechanisms and a continuous adaptation of the metabolism of the involved cells to varying environmental conditions. Although some of these processes are well understood today many of the molecular mechanisms underlying SNF, especially in chickpea, remain unclear. Here, we reannotated our previously published transcriptome data generated by deepSuperSAGE (Serial Analysis of Gene Expression) to the recently published draft genome of chickpea to assess the root- and nodule-specific transcriptomes of the eukaryotic host cells. The identified gene expression patterns comprise up to 71 significantly differentially expressed genes and the expression of twenty of these was validated by quantitative real-time PCR with the tissues from five independent biological replicates. Many of the differentially expressed transcripts were found to encode proteins implicated in sugar metabolism, antioxidant defense as well as biotic and abiotic stress responses of the host cells, and some of them were already known to contribute to SNF in other legumes. The differentially expressed genes identified in this study represent candidates that can be used for further characterization of the complex molecular mechanisms underlying SNF in chickpea.
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Affiliation(s)
- Fabian Afonso-Grunz
- Institute for Molecular BioSciences, Goethe University Frankfurt am MainFrankfurt am Main, Germany
- GenXPro GmbH, Frankfurt Biotechnology Innovation Center (FIZ)Frankfurt am Main, Germany
- *Correspondence: Fabian Afonso-Grunz, Laboratory of Prof. Dr. Günter Kahl, Goethe University Frankfurt am Main, Institute for Molecular BioSciences, Max-von-Laue-Str. 9, 60438 Frankfurt am Main, Germany e-mail:
| | - Carlos Molina
- GenXPro GmbH, Frankfurt Biotechnology Innovation Center (FIZ)Frankfurt am Main, Germany
- Plant Breeding Institute, Christian-Albrechts-University KielKiel, Germany
| | - Klaus Hoffmeier
- GenXPro GmbH, Frankfurt Biotechnology Innovation Center (FIZ)Frankfurt am Main, Germany
| | - Lukas Rycak
- GenXPro GmbH, Frankfurt Biotechnology Innovation Center (FIZ)Frankfurt am Main, Germany
| | - Himabindu Kudapa
- International Crops Research Institute for the Semi-Arid TropicsHyderabad, India
| | - Rajeev K. Varshney
- International Crops Research Institute for the Semi-Arid TropicsHyderabad, India
| | - Jean-Jacques Drevon
- French National Institute for Agricultural Research (INRA), Eco&SolsMontpellier-Cedex, France
| | - Peter Winter
- GenXPro GmbH, Frankfurt Biotechnology Innovation Center (FIZ)Frankfurt am Main, Germany
| | - Günter Kahl
- Institute for Molecular BioSciences, Goethe University Frankfurt am MainFrankfurt am Main, Germany
- GenXPro GmbH, Frankfurt Biotechnology Innovation Center (FIZ)Frankfurt am Main, Germany
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