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Dasumani M, Lenhart S, Onyambu GK, Moore SE. Optimal control of species augmentation in a competition model. Math Biosci 2025; 381:109394. [PMID: 39929436 DOI: 10.1016/j.mbs.2025.109394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2024] [Revised: 01/29/2025] [Accepted: 01/30/2025] [Indexed: 02/16/2025]
Abstract
Mathematical models of endangered competitive interactions incorporating the Allee effect with augmentation strategies have not been studied extensively. This area is however critical to ecologists since it relates to ways species can become endangered and possibly go extinct due to competition for limited resources. More importantly, the climatic change with its adverse effects has not only affected green forests but has also caused the extinction of some species. Thus, there is a need for critical augmentation strategies to safeguard such species. This paper, therefore, presents an optimal control strategy for a continuous time competition interaction model with strong Allee effects. We seek to maximize the target species at the end of each final time. We consider two objective functionals involving the populations and the cost of the controls. Using Pontryagin's Maximum Principle, we obtain the optimal control characterizations. We perform numerical simulations using the forward-backward sweep method and the approximate solutions are presented and discussed. Since there is a cost involved in the translocation of the reserve species, we adopt a minimization cost strategy. In addition, we compute the objective functional values for each simulation.
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Affiliation(s)
- Munkaila Dasumani
- Department of Mathematics, Institute for Basic Sciences, Technology and Innovation, Pan African University, Nairobi, Kenya.
| | - Suzanne Lenhart
- Department of Mathematics, University of Tennessee, Knoxville, TN, USA
| | - Gladys K Onyambu
- Department of Zoology, Jomo Kenyatta University of Agriculture and Technology, Nairobi, Kenya
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2
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Cowl VB, Comizzoli P, Appeltant R, Bolton RL, Browne RK, Holt WV, Penfold LM, Swegen A, Walker SL, Williams SA. Cloning for the Twenty-First Century and Its Place in Endangered Species Conservation. Annu Rev Anim Biosci 2024; 12:91-112. [PMID: 37988633 DOI: 10.1146/annurev-animal-071423-093523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2023]
Abstract
Cloning as it relates to the animal kingdom generally refers to the production of genetically identical individuals. Because cloning is increasingly the subject of renewed attention as a tool for rescuing endangered or extinct species, it seems timely to dissect the role of the numerous reproductive techniques encompassed by this term in animal species conservation. Although cloning is typically associated with somatic cell nuclear transfer, the recent advent of additional techniques that allow genome replication without genetic recombination demands that the use of induced pluripotent stem cells to generate gametes or embryos, as well as older methods such as embryo splitting, all be included in this discussion. Additionally, the phenomenon of natural cloning (e.g., a subset of fish, birds, invertebrates, and reptilian species that reproduce via parthenogenesis) must also be pointed out. Beyond the biology of these techniques are practical considerations and the ethics of using cloning and associated procedures in endangered or extinct species. All of these must be examined in concert to determine whether cloning has a place in species conservation. Therefore, we synthesize progress in cloning and associated techniques and dissect the practical and ethical aspects of these methods as they pertain to endangered species conservation.
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Affiliation(s)
- Veronica B Cowl
- North of England Zoological Society (Chester Zoo), Chester, United Kingdom;
- European Association of Zoos and Aquaria, Amsterdam, The Netherlands
| | - Pierre Comizzoli
- Smithsonian's National Zoo and Conservation Biology Institute, Washington, DC, USA;
| | - Ruth Appeltant
- Gamete Research Centre, Veterinary Physiology and Biochemistry, Department of Veterinary Sciences, University of Antwerp, Wilrijk, Belgium;
| | | | - Robert K Browne
- Sustainability America, Sarteneja, Corozal District, Belize;
| | - William V Holt
- Department of Oncology and Metabolism, The Medical School, University of Sheffield, Sheffield, United Kingdom;
| | - Linda M Penfold
- South East Zoo Alliance for Reproduction & Conservation, Yulee, Florida, USA;
| | - Aleona Swegen
- Priority Research Centre for Reproductive Science, University of Newcastle, Callaghan, New South Wales, Australia;
| | - Susan L Walker
- North of England Zoological Society (Chester Zoo), Chester, United Kingdom;
- Nature's SAFE, Whitchurch, Shropshire, United Kingdom;
| | - Suzannah A Williams
- Nature's SAFE, Whitchurch, Shropshire, United Kingdom;
- Nuffield Department of Women's and Reproductive Health, John Radcliffe Hospital, University of Oxford, Oxford, United Kingdom;
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3
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Albani Rocchetti G, Carta A, Mondoni A, Godefroid S, Davis CC, Caneva G, Albrecht MA, Alvarado K, Bijmoer R, Borosova R, Bräuchler C, Breman E, Briggs M, Buord S, Cave LH, Da Silva NG, Davey AH, Davies RM, Dickie JB, Fabillo M, Fleischmann A, Franks A, Hall G, Kantvilas G, Klak C, Liu U, Medina L, Reinhammar LG, Sebola RJ, Schönberger I, Sweeney P, Voglmayr H, White A, Wieringa JJ, Zippel E, Abeli T. Selecting the best candidates for resurrecting extinct-in-the-wild plants from herbaria. NATURE PLANTS 2022; 8:1385-1393. [PMID: 36536014 DOI: 10.1038/s41477-022-01296-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2022] [Accepted: 10/31/2022] [Indexed: 05/12/2023]
Abstract
Resurrecting extinct species is a fascinating and challenging idea for scientists and the general public. Whereas some theoretical progress has been made for animals, the resurrection of extinct plants (de-extinction sensu lato) is a relatively recently discussed topic. In this context, the term 'de-extinction' is used sensu lato to refer to the resurrection of 'extinct in the wild' species from seeds or tissues preserved in herbaria, as we acknowledge the current impossibility of knowing a priori whether a herbarium seed is alive and can germinate. In plants, this could be achieved by germinating or in vitro tissue-culturing old diaspores such as seeds or spores available in herbarium specimens. This paper reports the first list of plant de-extinction candidates based on the actual availability of seeds in herbarium specimens of globally extinct plants. We reviewed globally extinct seed plants using online resources and additional literature on national red lists, resulting in a list of 361 extinct taxa. We then proposed a method of prioritizing candidates for seed-plant de-extinction from diaspores found in herbarium specimens and complemented this with a phylogenetic approach to identify species that may maximize evolutionarily distinct features. Finally, combining data on seed storage behaviour and longevity, as well as specimen age in the novel 'best de-extinction candidate' score (DEXSCO), we identified 556 herbarium specimens belonging to 161 extinct species with available seeds. We expect that this list of de-extinction candidates and the novel approach to rank them will boost research efforts towards the first-ever plant de-extinction.
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Affiliation(s)
| | | | - Andrea Mondoni
- Department of Earth and Environmental Science, University of Pavia, Pavia, Italy
| | - Sandrine Godefroid
- Research Department, Meise Botanic Garden, Meise, Belgium
- Service général de l'Enseignement supérieur et de la Recherche scientifique, Fédération Wallonie, Brussels, Belgium
- Laboratory of Plant Ecology and Biogeochemistry, Université libre de Bruxelles, Brussels, Belgium
| | - Charles C Davis
- Department of Organismic Biology, Harvard University, Cambridge, MA, USA
- Harvard University Herbaria, Cambridge, MA, USA
| | - Giulia Caneva
- Department of Science, University of Roma Tre, Rome, Italy
| | - Matthew A Albrecht
- Center for Conservation and Sustainable Development, Missouri Botanical Garden, St Louis, MO, USA
| | - Karla Alvarado
- Department of Cell Biology, Microbiology and Molecular Biology, University of South Florida, Tampa, FL, USA
| | - Roxali Bijmoer
- Naturalis Biodiversity Center, Botany Section, Leiden, the Netherlands
| | | | | | - Elinor Breman
- Royal Botanic Gardens, Kew, Wakehurst; Ardingly, Haywards Heath, West Sussex, UK
| | | | - Stephane Buord
- Conservatoire botanique national de Brest, Brest, France
| | | | - Nílber Gonçalves Da Silva
- Departamento de Botânica, Museu Nacional, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | | | - Rachael M Davies
- Royal Botanic Gardens Kew, Seed and Lab-Based Collections, Sussex, UK
| | - John B Dickie
- Royal Botanic Gardens Kew, Seed and Lab-Based Collections, Sussex, UK
| | - Melodina Fabillo
- Queensland Herbarium, Department of Environment and Science, Brisbane Botanic Gardens Mt Coot-tha, Toowong, Queensland, Australia
| | - Andreas Fleischmann
- Botanische Staatssammlung München (SNSB-BSM), and GeoBio-Center LMU, Ludwig-Maximilians-University, Munich, Germany
| | - Andrew Franks
- Queensland Herbarium, Department of Environment and Science, Brisbane Botanic Gardens Mt Coot-tha, Toowong, Queensland, Australia
| | - Geoffrey Hall
- Centre sur la biodiversité de l'Université de Montréal (CITES CA-035), Montréal, Québec, Canada
| | - Gintaras Kantvilas
- Tasmanian Herbarium, Tasmanian Museum and Art Gallery, Sandy Bay, Tasmania, Australia
| | - Cornelia Klak
- Bolus Herbarium, Department of Biological Sciences, University of Cape Town, Rondebosch, South Africa
| | - Udayangani Liu
- Royal Botanic Gardens, Kew, Wellcome Trust Millennium Building, West Sussex, England, UK
| | | | | | - Ramagwai J Sebola
- South African National Biodiversity Institute, Pretoria, South Africa
- School of Animal, Plant and Environmental Sciences, University of the Witwatersrand; WITS, Johannesburg, South Africa
| | - Ines Schönberger
- Allan Herbarium, Manaaki Whenua - Landcare Research, Lincoln, New Zealand
| | - Patrick Sweeney
- Peabody Museum of Natural History, Yale University, New Haven, CT, USA
| | - Hermann Voglmayr
- Department for Botany and Biodiversity Research, University of Vienna, Vienna, Austria
| | - Adam White
- CSIRO Black Mountain Laboratories, Black Mountain, Australian Capital Territory, Australia
| | - Jan J Wieringa
- Naturalis Biodiversity Center, Botany Section, Leiden, the Netherlands
| | - Elke Zippel
- Dahlem Seed Bank, Botanical Garden and Botanic Museum Berlin, Berlin, Germany
| | - Thomas Abeli
- Department of Science, University of Roma Tre, Rome, Italy
- IUCN SSC Conservation Translocation Specialist Group, Calgary, Alberta, Canada
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Jarić I, Roll U, Bonaiuto M, Brook BW, Courchamp F, Firth JA, Gaston KJ, Heger T, Jeschke JM, Ladle RJ, Meinard Y, Roberts DL, Sherren K, Soga M, Soriano-Redondo A, Veríssimo D, Correia RA. Societal extinction of species. Trends Ecol Evol 2022; 37:411-419. [PMID: 35181167 DOI: 10.1016/j.tree.2021.12.011] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 12/21/2021] [Accepted: 12/24/2021] [Indexed: 12/19/2022]
Abstract
The ongoing global biodiversity crisis not only involves biological extinctions, but also the loss of experience and the gradual fading of cultural knowledge and collective memory of species. We refer to this phenomenon as 'societal extinction of species' and apply it to both extinct and extant taxa. We describe the underlying concepts as well as the mechanisms and factors that affect this process, discuss its main implications, and identify mitigation measures. Societal extinction is cognitively intractable, but it is tied to biological extinction and thus has important consequences for conservation policy and management. It affects societal perceptions of the severity of anthropogenic impacts and of true extinction rates, erodes societal support for conservation efforts, and causes the loss of cultural heritage.
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Affiliation(s)
- Ivan Jarić
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, České Budějovice, Czech Republic; Department of Ecosystem Biology,(,) Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic.
| | - Uri Roll
- Mitrani Department of Desert Ecology, The Jacob Blaustein Institutes for Desert Research Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel
| | - Marino Bonaiuto
- CIRPA Centro Interuniversitario di Ricerca in Psicologia Ambientale, Dipartimento di Psicologia dei Processi di Sviluppo e Socializzazione, Sapienza Università di Roma, Rome, Italy
| | - Barry W Brook
- School of Natural Sciences, University of Tasmania, Hobart, Tasmania, Australia; ARC Centre of Excellence for Australian Biodiversity and Heritage, University of Tasmania, Hobart, Tasmania, Australia
| | - Franck Courchamp
- Université Paris-Saclay, CNRS, AgroParisTech, Ecologie Systématique Evolution, Orsay, France
| | - Josh A Firth
- Department of Zoology, University of Oxford, Oxford, UK
| | - Kevin J Gaston
- Environment and Sustainability Institute, University of Exeter, Penryn, Cornwall, UK
| | - Tina Heger
- Technical University of Munich, Restoration Ecology, Freising, Germany; Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany; Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany; Institute of Biology, Freie Universität Berlin, Berlin, Germany
| | - Jonathan M Jeschke
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany; Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany; Institute of Biology, Freie Universität Berlin, Berlin, Germany
| | - Richard J Ladle
- CIBIO/InBio, Centro de Investigação em Biodiversidade e Recursos Genéticos, Laboratório Associado, Universidade do Porto, Vairão, Portugal; Institute of Biological and Health Sciences, Federal University of Alagoas, Maceió, Alagoas, Brazil
| | - Yves Meinard
- Université Paris Dauphine, PSL Research University, CNRS, Paris, France
| | - David L Roberts
- Durrell Institute of Conservation and Ecology, School of Anthropology and Conservation, University of Kent, Canterbury, Kent, UK
| | - Kate Sherren
- School for Resource and Environmental Studies, Dalhousie University, Halifax, Canada
| | - Masashi Soga
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Andrea Soriano-Redondo
- Helsinki Lab of Interdisciplinary Conservation Science (HELICS), Department of Geosciences and Geography, University of Helsinki, Helsinki, Finland; Helsinki Institute of Sustainability Science (HELSUS), University of Helsinki, Helsinki, Finland
| | | | - Ricardo A Correia
- Institute of Biological and Health Sciences, Federal University of Alagoas, Maceió, Alagoas, Brazil; Helsinki Lab of Interdisciplinary Conservation Science (HELICS), Department of Geosciences and Geography, University of Helsinki, Helsinki, Finland; Helsinki Institute of Sustainability Science (HELSUS), University of Helsinki, Helsinki, Finland; CESAM - Centre for Environmental and Marine Studies, University of Aveiro, Aveiro, Portugal
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5
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Mayran A, Bolt CC. Transgenic Model Systems Have Revolutionized the Study of Disease. DNA Cell Biol 2022; 41:49-52. [PMID: 34941457 PMCID: PMC8787710 DOI: 10.1089/dna.2021.0514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 10/18/2021] [Accepted: 10/19/2021] [Indexed: 11/08/2022] Open
Abstract
The current pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has affected most of the world in a profound way. As an indirect consequence, the general public has been put into direct contact with the research process, almost in real time. Justifiably, a lot of this focus has been targeted toward research directly linked to coronavirus disease 2019 (COVID-19). In this opinion article, we want to highlight to a general audience the value of having a diverse "portfolio" of research approaches for society as a whole. In this study, we will focus on our field of research, namely the study of gene regulation through the use of transgenesis. We will highlight how this type of research can also be used to provide a better understanding as well as tools to fight SARS-CoV-2 and other future challenges.
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Affiliation(s)
- Alexandre Mayran
- School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Christopher Chase Bolt
- School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
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6
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Hoffmann AA, Miller AD, Weeks AR. Genetic mixing for population management: From genetic rescue to provenancing. Evol Appl 2021; 14:634-652. [PMID: 33767740 PMCID: PMC7980264 DOI: 10.1111/eva.13154] [Citation(s) in RCA: 77] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Revised: 10/10/2020] [Accepted: 10/14/2020] [Indexed: 12/21/2022] Open
Abstract
Animal and plant species around the world are being challenged by the deleterious effects of inbreeding, loss of genetic diversity, and maladaptation due to widespread habitat destruction and rapid climate change. In many cases, interventions will likely be needed to safeguard populations and species and to maintain functioning ecosystems. Strategies aimed at initiating, reinstating, or enhancing patterns of gene flow via the deliberate movement of genotypes around the environment are generating growing interest with broad applications in conservation and environmental management. These diverse strategies go by various names ranging from genetic or evolutionary rescue to provenancing and genetic resurrection. Our aim here is to provide some clarification around terminology and to how these strategies are connected and linked to underlying genetic processes. We draw on case studies from the literature and outline mechanisms that underlie how the various strategies aim to increase species fitness and impact the wider community. We argue that understanding mechanisms leading to species decline and community impact is a key to successful implementation of these strategies. We emphasize the need to consider the nature of source and recipient populations, as well as associated risks and trade-offs for the various strategies. This overview highlights where strategies are likely to have potential at population, species, and ecosystem scales, but also where they should probably not be attempted depending on the overall aims of the intervention. We advocate an approach where short- and long-term strategies are integrated into a decision framework that also considers nongenetic aspects of management.
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Affiliation(s)
- Ary A. Hoffmann
- School of BioSciencesBio21 InstituteThe University of MelbourneParkvilleVic.Australia
| | - Adam D. Miller
- School of Life and Environmental SciencesCentre for Integrative EcologyDeakin UniversityWarrnamboolVic.Australia
- Deakin Genomics CentreDeakin UniversityGeelongVic.Australia
| | - Andrew R. Weeks
- School of BioSciencesBio21 InstituteThe University of MelbourneParkvilleVic.Australia
- cesar Pty LtdParkvilleVic.Australia
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7
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Mozelewski TG, Scheller RM. Forecasting for intended consequences. CONSERVATION SCIENCE AND PRACTICE 2021. [DOI: 10.1111/csp2.370] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
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8
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Coradini ALV, Hull CB, Ehrenreich IM. Building genomes to understand biology. Nat Commun 2020; 11:6177. [PMID: 33268788 PMCID: PMC7710724 DOI: 10.1038/s41467-020-19753-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Accepted: 10/29/2020] [Indexed: 02/06/2023] Open
Abstract
Genetic manipulation is one of the central strategies that biologists use to investigate the molecular underpinnings of life and its diversity. Thus, advances in genetic manipulation usually lead to a deeper understanding of biological systems. During the last decade, the construction of chromosomes, known as synthetic genomics, has emerged as a novel approach to genetic manipulation. By facilitating complex modifications to chromosome content and structure, synthetic genomics opens new opportunities for studying biology through genetic manipulation. Here, we discuss different classes of genetic manipulation that are enabled by synthetic genomics, as well as biological problems they each can help solve.
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Affiliation(s)
- Alessandro L V Coradini
- Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-2910, USA
| | - Cara B Hull
- Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-2910, USA
| | - Ian M Ehrenreich
- Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-2910, USA.
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9
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Creating proxies of extinct species: the bioethics of de-extinction. Emerg Top Life Sci 2020; 3:731-735. [PMID: 32915217 DOI: 10.1042/etls20190109] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2019] [Revised: 09/13/2019] [Accepted: 09/16/2019] [Indexed: 11/17/2022]
Abstract
In April 2013 the National Geographic magazine carried the cover title 'Reviving extinct species, we can, but should we?' suggesting that the technical challenges had been met, but some ethical concerns remained unresolved. Seven years later it is clear that this is not the case. Here we consider the technical scope, the uncertainties, and some of the bioethical issues raised by the future prospect of de-extinction. Biodiversity and welfare will not always align, and when a clash is unavoidable, a trade-off will be necessary, seeking the greatest overall value. De-extinction challenges our current conservation mind-set that seeks to preserve the species and population diversity that currently exists. But if we want to sustain and enhance a biodiverse natural world we might have to be forward looking and embrace the notion of bio-novelty by focussing more on ecosystem stability and resilience, rather than backward looking and seeking to try and recreate lost worlds.
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11
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Frankenstein’s work or everyday conservation? How reintroductions are informing the de-extinction debate. J Nat Conserv 2020. [DOI: 10.1016/j.jnc.2020.125870] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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12
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Abeli T, Dalrymple S, Godefroid S, Mondoni A, Müller JV, Rossi G, Orsenigo S. Ex situ collections and their potential for the restoration of extinct plants. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2020; 34:303-313. [PMID: 31329316 DOI: 10.1111/cobi.13391] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2018] [Revised: 07/10/2019] [Accepted: 07/12/2019] [Indexed: 06/10/2023]
Abstract
The alarming current and predicted species extinction rates have galvanized conservationists in their efforts to avoid future biodiversity losses, but for species extinct in the wild, few options exist. We posed the questions, can these species be restored, and, if so, what role can ex situ plant collections (i.e., botanic gardens, germplasm banks, herbaria) play in the recovery of plant genetic diversity? We reviewed the relevant literature to assess the feasibility of recovering lost plant genetic diversity with using ex situ material and the probability of survival of subsequent translocations. Thirteen attempts to recover species extinct in the wild were found, most of which used material preserved in botanic gardens (12) and seed banks (2). One case of a locally extirpated population was recovered from herbarium material. Eight (60%) of these cases were successful or partially successful translocations of the focal species or population; the other 5 failed or it was too early to determine the outcome. Limiting factors of the use of ex situ source material for the restoration of plant genetic diversity in the wild include the scarcity of source material, low viability and reduced longevity of the material, low genetic variation, lack of evolution (especially for material stored in germplasm banks and herbaria), and socioeconomic factors. However, modern collecting practices present opportunities for plant conservation, such as improved collecting protocols and improved cultivation and storage conditions. Our findings suggest that all types of ex situ collections may contribute effectively to plant species conservation if their use is informed by a thorough understanding of the aforementioned problems. We conclude that the recovery of plant species currently classified as extinct in the wild is not 100% successful, and the possibility of successful reintroduction should not be used to justify insufficient in situ conservation.
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Affiliation(s)
- Thomas Abeli
- Department of Science, University of Roma Tre, Viale Guglielmo Marconi 446, Roma, 00146, Italy
| | - Sarah Dalrymple
- School of Natural Sciences and Psychology, Liverpool John Moores University, James Parsons Building, Byrom Street, Liverpool, L3 3AF, U.K
| | - Sandrine Godefroid
- Research Department, Botanic Garden Meise, Nieuwelaan 38, Meise, 1860, Belgium
- Service général de l'Enseignement supérieur et de la Recherche scientifique, Fédération Wallonie-Bruxelles, rue A. Lavallée 1, Brussels, 1080, Belgium
- Laboratory of Plant Ecology and Biogeochemistry, Université libre de Bruxelles, CP 244, Boulevard du Triomphe, Brussels, 1050, Belgium
| | - Andrea Mondoni
- Department of Earth and Environmental Sciences, University of Pavia, Via S. Epifanio 14, 27100, Pavia, Italy
| | - Jonas V Müller
- Millennium Seed Bank, Conservation Science, Royal Botanic Gardens Kew, Wakehurst Place, Ardingly, RH17 6TN, West Sussex, U.K
| | - Graziano Rossi
- Department of Earth and Environmental Sciences, University of Pavia, Via S. Epifanio 14, 27100, Pavia, Italy
| | - Simone Orsenigo
- Department of Earth and Environmental Sciences, University of Pavia, Via S. Epifanio 14, 27100, Pavia, Italy
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13
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Limits to alien black rats (Rattus rattus) acting as equivalent pollinators to extinct native small mammals: the influence of stem width on mammal activity at native Banksia ericifolia inflorescences. Biol Invasions 2019. [DOI: 10.1007/s10530-019-02090-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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14
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Technoscience and Biodiversity Conservation. Asian Bioeth Rev 2018; 10:245-259. [PMID: 33717291 DOI: 10.1007/s41649-018-0071-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Revised: 11/16/2018] [Accepted: 11/28/2018] [Indexed: 10/26/2022] Open
Abstract
The discovery of CRISPR/Cas9 has opened new avenues in gene editing. This system, usually considered as molecular scissors, permits the cutting of the DNA at a targeted site allowing the introduction of new genes or the removal or the modification of existing ones. The genome-editing, involving gene drive or not, is then considered with a strong interest in a variety of fields ranging from agriculture to public health and conservation biology. Given its controversial aspects, it is then no surprise that actors in biodiversity conservation do express conflicting views on this emerging and disruptive technology. The positions are ranging from a request for a moratorium to the will to test and deploy it in strategies aiming at eradicating invasive species of mammals on islands. Reviewing some of its recent developments brings light on the conflicts of interest, the financial support, and lobbying currently occurring in this growing field of biotechnology. While an optimistic view on the use of gene drive for ecosystem conservation was first promoted by several molecular biologists, the risks and uncertainties associated have now led to some reservations. Overall, the eventual use of this novel approach for conservation raises concerns related to the engagement of the public, the communication between scientists, and the public and the risk of a manufactured consent. There are also a series of essential ethical and philosophical questions on the relations we have with Nature that needs to be answered.
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Abstract
De-extinction projects for species such as the woolly mammoth and passenger pigeon have greatly stimulated public and scientific interest, producing a large body of literature and much debate. To date, there has been little consistency in descriptions of de-extinction technologies and purposes. In 2016, a special committee of the International Union for the Conservation of Nature (IUCN) published a set of guidelines for de-extinction practice, establishing the first detailed description of de-extinction; yet incoherencies in published literature persist. There are even several problems with the IUCN definition. Here I present a comprehensive definition of de-extinction practice and rationale that expounds and reconciles the biological and ecological inconsistencies in the IUCN definition. This new definition brings together the practices of reintroduction and ecological replacement with de-extinction efforts that employ breeding strategies to recover unique extinct phenotypes into a single “de-extinction” discipline. An accurate understanding of de-extinction and biotechnology segregates the restoration of certain species into a new classification of endangerment, removing them from the purview of de-extinction and into the arena of species’ recovery. I term these species as “evolutionarily torpid species”; a term to apply to species falsely considered extinct, which in fact persist in the form of cryopreserved tissues and cultured cells. For the first time in published literature, all currently active de-extinction breeding programs are reviewed and their progress presented. Lastly, I review and scrutinize various topics pertaining to de-extinction in light of the growing body of peer-reviewed literature published since de-extinction breeding programs gained public attention in 2013.
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16
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Tanentzap AJ, Smith BR. Unintentional rewilding: lessons for trophic rewilding from other forms of species introductions. Philos Trans R Soc Lond B Biol Sci 2018; 373:20170445. [PMID: 30348872 PMCID: PMC6231064 DOI: 10.1098/rstb.2017.0445] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/13/2018] [Indexed: 11/12/2022] Open
Abstract
Trophic rewilding involves adding species into ecosystems to restore extinct, top-down interactions, but limited quantitative data have prevented a systematic attempt to quantify its outcomes. Here, we exploit species introductions that have occurred for purposes other than restoration to inform trophic rewilding. We compiled 51 studies with 158 different responses of lower trophic levels to a species introduction that restored an extinct interaction, whether it intended to do so or not. Unintentional introductions were compared with checklists of extinct animals to identify potential analogues. Using the latest meta-analysis techniques, we found that the few cases of intentional rewilding had similar effects to unintentional rewilding, though there were large taxonomic and geographical biases. We also tested predictions from studies on trophic cascades about the factors that should influence rewilding. Unintentional rewilding was stronger where introduced consumers were non-invasive, but there was no effect of time that compared sites differed in introduction status, latitude or coevolution of responses with a taxonomically related analogue. Our study now shows that rewilding can reinstate extinct trophic interactions and highlights remaining data gaps that need closure to restore ecosystems across larger scales than has been previously possible.This article is part of the theme issue 'Trophic rewilding: consequences for ecosystems under global change'.
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Affiliation(s)
- Andrew J Tanentzap
- Ecosystems and Global Change Group, Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK
| | - Bethany R Smith
- Department of Life Sciences, Imperial College London, Silwood Park Campus, Buckhurst Road, Ascot, Berkshire SL5 7PY, UK
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17
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Essl F, Bacher S, Genovesi P, Hulme PE, Jeschke JM, Katsanevakis S, Kowarik I, Kühn I, Pyšek P, Rabitsch W, Schindler S, van Kleunen M, Vilà M, Wilson JRU, Richardson DM. Which Taxa Are Alien? Criteria, Applications, and Uncertainties. Bioscience 2018. [DOI: 10.1093/biosci/biy057] [Citation(s) in RCA: 99] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Franz Essl
- Division of Conservation Biology, Vegetation and Landscape Ecology at the University of Vienna, in Austria; the Department of Biodiversity and Nature Conservation at Environment Agency Austria, in Vienna; and the Centre for Invasion Biology in the Department of Botany and Zoology at Stellenbosch University, in South Africa
| | - Sven Bacher
- Department of Biology at the University of Fribourg, in Switzerland
| | - Piero Genovesi
- Institute for Environmental Protection and Research (ISPRA) and is the chair of the International Union for Conservation of Nature Species Survival Commission Invasive Species Specialist Group, in Rome, Italy
| | - Philip E Hulme
- Bio-Protection Research Centre at Lincoln University, in Christchurch, New Zealand
| | - Jonathan M Jeschke
- Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB); Freie Universität Berlin; and the Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), in Berlin, Germany
| | - Stelios Katsanevakis
- Department of Marine Sciences at the University of the Aegean, in Mytilene, Greece
| | - Ingo Kowarik
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB) and is chair of ecosystem science/plant ecology at Technische Universität Berlin, in Germany
| | - Ingolf Kühn
- Helmholtz Centre for Environmental Research–UFZ in the Department of Community Ecology, in Halle, Germany; the Geobotany and Botanical Garden at Martin Luther University Halle-Wittenberg, in Halle, Germany; and the German Centre for Integrative Biodiversity Research (iDiv), in Leipzig, Germany
| | - Petr Pyšek
- Institute of Botany and the Department of Invasion Ecology at The Czech Academy of Sciences, in Průhonice, Czech Republic, and with the Department of Ecology at Charles University, in Prague, Czech Republic
| | - Wolfgang Rabitsch
- Department of Biodiversity and Nature Conservation at Environment Agency Austria, in Vienna
| | - Stefan Schindler
- Department of Biodiversity and Nature Conservation at Environment Agency Austria, in Vienna
| | - Mark van Kleunen
- Department of Biology at the University of Konstanz, in Germany, and with the Zhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation at Taizhou University, in China
| | - Montserrat Vilà
- Estación Biológica de Doñana, Consejo Superior de Investigaciones Científicas (EBD-CSIC), in Sevilla, Spain
| | - John R U Wilson
- Centre for Invasion Biology in the Department of Botany and Zoology at Stellenbosch University, in South Africa
- South African National Biodiversity Institute at the Kirstenbosch Research Centre, Cape Town, South Africa
| | - David M Richardson
- Centre for Invasion Biology in the Department of Botany and Zoology at Stellenbosch University, in South Africa
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Burge DRL, Edlund MB, Frisch D. Paleolimnology and resurrection ecology: The future of reconstructing the past. Evol Appl 2018; 11:42-59. [PMID: 29302271 PMCID: PMC5748527 DOI: 10.1111/eva.12556] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2017] [Accepted: 09/08/2017] [Indexed: 12/21/2022] Open
Abstract
Paleolimnologists have utilized lake sediment records to understand historical lake and landscape development, timing and magnitude of environmental change at lake, watershed, regional and global scales, and as historical datasets to target watershed and lake management. Resurrection ecologists have long recognized lake sediments as sources of viable propagules ("seed or egg banks") with which to explore questions of community ecology, ecological response, and evolutionary ecology. Most researchers consider Daphnia as the primary model organism in these efforts, but many other aquatic biota, from viruses to macrophytes, similarly produce viable propagules that are incorporated in the sediment record but have been underutilized in resurrection ecology. The common goals shared by these two disciplines have led to mutualistic and synergistic collaborations-a development that must be encouraged to expand. We give an overview of the achievements of paleolimnology and the reconstruction of environmental history of lakes, review the untapped diversity of aquatic organisms that produce dormant propagules, compare Daphnia as a model of resurrection ecology with other organisms amenable to resurrection studies, especially diatoms, and consider new research directions that represent the nexus of these two fields.
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Affiliation(s)
- David R. L. Burge
- St. Croix Watershed Research StationScience Museum of MinnesotaMarine on St. CroixMNUSA
- Water Resources Science Graduate ProgramUniversity of MinnesotaSt. PaulMNUSA
| | - Mark B. Edlund
- St. Croix Watershed Research StationScience Museum of MinnesotaMarine on St. CroixMNUSA
| | - Dagmar Frisch
- School of BiosciencesUniversity of BirminghamBirminghamUK
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Selbach C, Seddon PJ, Poulin R. Parasites Lost: Neglecting a Crucial Element in De-Extinction. Trends Parasitol 2017; 34:9-11. [PMID: 28870497 DOI: 10.1016/j.pt.2017.08.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2017] [Revised: 08/08/2017] [Accepted: 08/08/2017] [Indexed: 02/07/2023]
Abstract
Bringing back iconic and beloved extinct species is a hot and intensely debated current topic. Yet, the parasites of de-extinction candidate species have remained largely overlooked in this debate. Here we point out the potentially far-reaching ecological impacts of bringing back extinct species without their parasites.
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Affiliation(s)
- Christian Selbach
- Department of Zoology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.
| | - Philip J Seddon
- Department of Zoology, University of Otago, PO Box 56, Dunedin 9054, New Zealand
| | - Robert Poulin
- Department of Zoology, University of Otago, PO Box 56, Dunedin 9054, New Zealand
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20
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Campagna C, Guevara D, Le Boeuf B. De-scenting Extinction: The Promise of De-extinction May Hasten Continuing Extinctions. Hastings Cent Rep 2017; 47 Suppl 2:S48-S53. [PMID: 28746756 DOI: 10.1002/hast.752] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Among the most egregious and discouraging problems of conservation is the rapidly escalating human-caused species extinction rate. "De-extinction" refers to the application of certain cutting-edge techniques for the supposed recovery of lost species and gives the impression that scientists, enlightened and empowered by the miracles of technology, are coming to the rescue. "De-extinction" is the latest example of a long play of language that has given conservation efforts a tragically false sense of accomplishment and has worsened the conservation crisis. De-extinction is the tip of an intellectual iceberg that sits atop of a host of profoundly questionable value systems, expectations, attitudes, and priorities that elude and bewitch critical reflection. It gives the impression that extinction is reversible and, thus, diminishes the gravity of the human annihilation of species. Here, we examine how the language of de-extinction influences attitudes, shapes thoughts and imagination, and creates ethical blindness. The language developing around "de-extinction" reveals what is in fact a profound intellectual crisis at the foundation of conservation. The underlying challenge is to find the language that will articulate and inspire the radical and indispensable change needed to come to grips with the value of nature.
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Abstract
One interesting feature of de-extinction-particularly with respect to long-extinct species such as the passenger pigeon, thylacine, and mammoth-is that it does not fit neatly into the primary rationales for adopting novel ecosystem-management and species-conservation technologies and strategies: efficiency and necessity. The efficiency rationale is that the new technology or strategy enables conservation biologists to do what they already do more effectively. Why should researchers embrace novel information technologies? Because they allow scientists to better track, monitor, map, aggregate, and analyze species behaviors, biological systems, and human-environment interactions. This enables better decision-making about how to protect species, which areas to conserve, and how to reduce anthropogenic impacts on ecological systems. Many projects in conservation genomics are justified in this way. But de-extinction is not a more efficient or necessary means to some conservation aim that is already recognized as acceptable or important. In fact, because it is focused on reconstituting approximations of nonexistent species, rather than maintaining extant ones, the social and ethical assessment of de-extinction is not limited to asking whether it is a good means. We can ask as well whether de-extinction is a worthwhile "conservation" goal in the first place.
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Burgio KR, Carlson CJ, Tingley MW. Lazarus ecology: Recovering the distribution and migratory patterns of the extinct Carolina parakeet. Ecol Evol 2017; 7:5467-5475. [PMID: 28770082 PMCID: PMC5528215 DOI: 10.1002/ece3.3135] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2016] [Revised: 04/28/2017] [Accepted: 05/10/2017] [Indexed: 02/06/2023] Open
Abstract
The study of the ecology and natural history of species has traditionally ceased when a species goes extinct, despite the benefit to current and future generations of potential findings. We used the extinct Carolina parakeet as a case study to develop a framework investigating the distributional limits, subspecific variation, and migratory habits of this species as a means to recover important information about recently extinct species. We united historical accounts with museum collections to develop an exhaustive, comprehensive database of every known occurrence of this once iconic species. With these data, we combined species distribution models and ordinal niche comparisons to confront multiple conjectured hypotheses about the parakeet's ecology with empirical data on where and when this species occurred. Our results demonstrate that the Carolina parakeet's range was likely much smaller than previously believed, that the eastern and western subspecies occupied different climatic niches with broad geographical separation, and that the western subspecies was likely a seasonal migrant while the eastern subspecies was not. This study highlights the novelty and importance of collecting occurrence data from published observations on extinct species, providing a starting point for future investigations of the factors that drove the Carolina parakeet to extinction. Moreover, the recovery of lost autecological knowledge could benefit the conservation of other parrot species currently in decline and would be crucial to the success of potential de‐extinction efforts for the Carolina parakeet.
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Affiliation(s)
- Kevin R Burgio
- Department of Ecology and Evolutionary Biology University of Connecticut Storrs CT USA
| | - Colin J Carlson
- Department of Environmental Science, Policy and Management University of California Berkeley CA USA
| | - Morgan W Tingley
- Department of Ecology and Evolutionary Biology University of Connecticut Storrs CT USA
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23
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Wagner N, Hochkirch A, Martin H, Matenaar D, Rohde K, Wacht F, Wesch C, Wirtz S, Klein R, Lötters S, Proelss A, Veith M. De-extinction, nomenclature, and the law. Science 2017; 356:1016-1017. [DOI: 10.1126/science.aal4012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- Norman Wagner
- Department of Biogeography, Trier University,
Universitätsring 15, 54296 Trier, Germany
| | - Axel Hochkirch
- Department of Biogeography, Trier University,
Universitätsring 15, 54296 Trier, Germany
| | - Henrike Martin
- Institute of Environmental and Technology Law, Trier University,
54296 Trier, Germany
| | - Daniela Matenaar
- Department of Biogeography, Trier University,
Universitätsring 15, 54296 Trier, Germany
- Department of Entomology, Stuttgart State Museum of Natural
History, 70191 Stuttgart, Germany
- Hessisches Landesmuseum Darmstadt, 64283 Darmstadt,
Germany
| | - Katja Rohde
- Department of Biogeography, Trier University,
Universitätsring 15, 54296 Trier, Germany
| | - Frank Wacht
- Institute of Environmental and Technology Law, Trier University,
54296 Trier, Germany
| | - Charlotte Wesch
- Department of Biogeography, Trier University,
Universitätsring 15, 54296 Trier, Germany
| | - Sarah Wirtz
- Department of Biogeography, Trier University,
Universitätsring 15, 54296 Trier, Germany
| | - Roland Klein
- Department of Biogeography, Trier University,
Universitätsring 15, 54296 Trier, Germany
| | - Stefan Lötters
- Department of Biogeography, Trier University,
Universitätsring 15, 54296 Trier, Germany
| | - Alexander Proelss
- Institute of Environmental and Technology Law, Trier University,
54296 Trier, Germany
| | - Michael Veith
- Department of Biogeography, Trier University,
Universitätsring 15, 54296 Trier, Germany
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24
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Affiliation(s)
- Philip J. Seddon
- Department of Zoology University of Otago PO Box 56 Dunedin9015 New Zealand
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25
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Steeves TE, Johnson JA, Hale ML. Maximising evolutionary potential in functional proxies for extinct species: a conservation genetic perspective on de‐extinction. Funct Ecol 2017. [DOI: 10.1111/1365-2435.12843] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Tammy E. Steeves
- School of Biological Sciences University of Canterbury Private Bag 4800 Christchurch8140 New Zealand
| | - Jeff A. Johnson
- Department of Biological Sciences and Institute of Applied Science University of North Texas 1155 Union Circle Denton TX76203 USA
| | - Marie L. Hale
- School of Biological Sciences University of Canterbury Private Bag 4800 Christchurch8140 New Zealand
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26
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Bennett JR, Maloney RF, Steeves TE, Brazill-Boast J, Possingham HP, Seddon PJ. Spending limited resources on de-extinction could lead to net biodiversity loss. Nat Ecol Evol 2017; 1:53. [DOI: 10.1038/s41559-016-0053] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2016] [Accepted: 12/13/2016] [Indexed: 01/30/2023]
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27
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A Bigger Toolbox: Biotechnology in Biodiversity Conservation. Trends Biotechnol 2017; 35:55-65. [DOI: 10.1016/j.tibtech.2016.06.009] [Citation(s) in RCA: 81] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2016] [Revised: 06/17/2016] [Accepted: 06/23/2016] [Indexed: 01/08/2023]
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28
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Wood JR, Perry GLW, Wilmshurst JM. Using palaeoecology to determine baseline ecological requirements and interaction networks for de‐extinction candidate species. Funct Ecol 2016. [DOI: 10.1111/1365-2435.12773] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Jamie R. Wood
- Long‐term Ecology Lab Landcare Research PO Box 69040 Lincoln7640 New Zealand
| | - George L. W. Perry
- School of Environment The University of Auckland Private Bag 92019 Auckland1142 New Zealand
| | - Janet M. Wilmshurst
- Long‐term Ecology Lab Landcare Research PO Box 69040 Lincoln7640 New Zealand
- School of Environment The University of Auckland Private Bag 92019 Auckland1142 New Zealand
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29
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Abstract
The convergence of several disparate research programmes raises the possibility that the long-term evolutionary processes of innovation and radiation may become amenable to laboratory experimentation. Ancestors might be resurrected directly from naturally stored propagules or tissues, or indirectly from the expression of ancestral genes in contemporary genomes. New kinds of organisms might be evolved through artificial selection of major developmental genes. Adaptive radiation can be studied by mimicking major ecological transitions in the laboratory. All of these possibilities are subject to severe quantitative and qualitative limitations. In some cases, however, laboratory experiments may be capable of illuminating the processes responsible for the evolution of new kinds of organisms.
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Affiliation(s)
- Graham Bell
- Biology Department, McGill University, 1205 avenue docteur Penfield, Montreal, Quebec, Canada H3A 1B1
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30
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Affiliation(s)
- Douglas J. Richmond
- Section for Evolutionary Genomics Natural History Museum of Denmark University of Copenhagen Øster Voldgade 5–7 1350 Copenhagen Denmark
| | - Mikkel‐Holger S. Sinding
- Section for Evolutionary Genomics Natural History Museum of Denmark University of Copenhagen Øster Voldgade 5–7 1350 Copenhagen Denmark
- Natural History Museum University of Oslo P.O. Box 1172 Blindern NO‐0318 Oslo Norway
| | - M. Thomas P. Gilbert
- Section for Evolutionary Genomics Natural History Museum of Denmark University of Copenhagen Øster Voldgade 5–7 1350 Copenhagen Denmark
- Trace and Environmental DNA Laboratory Department of Environment and Agriculture Curtin University Perth WA 6102 Australia
- NTNU University Museum NO‐7491 Trondheim Norway
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31
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McCauley DJ, Hardesty‐Moore M, Halpern BS, Young HS. A mammoth undertaking: harnessing insight from functional ecology to shape de‐extinction priority setting. Funct Ecol 2016. [DOI: 10.1111/1365-2435.12728] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Douglas J. McCauley
- Department of Ecology, Evolution, and Marine Biology University of California Santa Barbara CA93106 USA
| | - Molly Hardesty‐Moore
- Department of Ecology, Evolution, and Marine Biology University of California Santa Barbara CA93106 USA
| | - Benjamin S. Halpern
- Bren School of Environmental Science & Management University of California Santa Barbara CA93106 USA
- National Center for Ecological Analysis and Synthesis University of California 735 State St. Suite 300 Santa Barbara CA93101 USA
- Imperial College London Silwood Park Campus Buckhurst Rd AscotSL57PY UK
| | - Hillary S. Young
- Department of Ecology, Evolution, and Marine Biology University of California Santa Barbara CA93106 USA
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32
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Affiliation(s)
- Alexandre Robert
- UMR 7204 MNHN‐CNRS‐UPMC Centre d'Ecologie et des Sciences de la Conservation Muséum National d'Histoire Naturelle 43, Rue Buffon 75005 Paris France
| | - Charles Thévenin
- UMR 7204 MNHN‐CNRS‐UPMC Centre d'Ecologie et des Sciences de la Conservation Muséum National d'Histoire Naturelle 43, Rue Buffon 75005 Paris France
| | - Karine Princé
- UMR 7204 MNHN‐CNRS‐UPMC Centre d'Ecologie et des Sciences de la Conservation Muséum National d'Histoire Naturelle 43, Rue Buffon 75005 Paris France
| | - François Sarrazin
- UPMC Univ Paris 06 Muséum National d'Histoire Naturelle CNRS CESCO UMR 7204 Sorbonne Universités 75005 Paris France
| | - Joanne Clavel
- UMR 7204 MNHN‐CNRS‐UPMC Centre d'Ecologie et des Sciences de la Conservation Muséum National d'Histoire Naturelle 43, Rue Buffon 75005 Paris France
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34
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Iacona G, Maloney RF, Chadès I, Bennett JR, Seddon PJ, Possingham HP. Prioritizing revived species: what are the conservation management implications of de‐extinction? Funct Ecol 2016. [DOI: 10.1111/1365-2435.12720] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Gwenllian Iacona
- ARC Centre of Excellence for Environmental Decisions School of Biological Sciences University of Queensland Goddard Building 8, St Lucia Qld 4072 Australia
| | - Richard F. Maloney
- Science and Policy Group Department of Conservation Private Bag 4715 Christchurch Mail Centre, Christchurch 8140 New Zealand
| | | | - Joseph R. Bennett
- Department of Biology Carleton University 209 Nesbitt Biology Bldg, 1125 Colonel by Drive Ottawa ON K1S 5B6 Canada
| | - Philip J. Seddon
- Department of Zoology University of Otago 340 Great King Street, PO Box 56 Dunedin 9054 New Zealand
| | - Hugh P. Possingham
- ARC Centre of Excellence for Environmental Decisions School of Biological Sciences University of Queensland Goddard Building 8, St Lucia Qld 4072 Australia
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35
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Shapiro B. Pathways to de‐extinction: how close can we get to resurrection of an extinct species? Funct Ecol 2016. [DOI: 10.1111/1365-2435.12705] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Beth Shapiro
- Department of Ecology and Evolutionary Biology and UCSC Genomics Institute University of California Santa Cruz 1156 High Street Santa Cruz CA95064 USA
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37
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Plein M, Bode M, Moir ML, Vesk PA. Translocation strategies for multiple species depend on interspecific interaction type. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2016; 26:1186-1197. [PMID: 27509757 DOI: 10.1890/15-0409] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Conservation translocations, anthropogenic movements of species to prevent their extinction, have increased substantially over the last few decades. Although multiple species are frequently moved to the same location, current translocation guidelines consider species in isolation. This practice ignores important interspecific interactions and thereby risks translocation failure. We model three different two-species systems to illustrate the inherent complexity of multispecies translocations and to assess the influence of different interaction types (consumer-resource, mutualism, and competition) on translocation strategies. We focus on how these different interaction types influence the optimal founder population sizes for successful translocations and the order in which the species are moved (simultaneous or sequential). Further, we assess the effect of interaction strength in simultaneous translocations and the time delay between translocations when moving two species sequentially. Our results show that translocation decisions need to reflect the type of interaction. While all translocations of interacting species require a minimum founder population size, which is demarked by an extinction boundary, consumer-resource translocations also have a maximum founder population limit. Above the minimum founder size, increasing the number of translocated individuals leads to a substantial increase in the extinction boundary of competitors and consumers, but not of mutualists. Competitive and consumer-resource systems benefit from sequential translocations, but the order of translocations does not change the outcomes for mutualistic interaction partners noticeably. Interspecific interactions are important processes that shape population dynamics and should therefore be incorporated into the quantitative planning of multispecies translocations. Our findings apply whenever interacting species are moved, for example, in reintroductions, conservation introductions, biological control, or ecosystem restoration.
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38
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Corlett RT. Restoration, Reintroduction, and Rewilding in a Changing World. Trends Ecol Evol 2016; 31:453-462. [PMID: 26987771 DOI: 10.1016/j.tree.2016.02.017] [Citation(s) in RCA: 149] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2015] [Revised: 02/15/2016] [Accepted: 02/16/2016] [Indexed: 01/23/2023]
Abstract
The increasing abandonment of marginal land creates new opportunities for restoration, reintroduction, and rewilding, but what do these terms mean in a rapidly and irreversibly changing world? The 're' prefix means 'back', but it is becoming clear that the traditional use of past ecosystems as targets and criteria for success must be replaced by an orientation towards an uncertain future. Current opinions in restoration and reintroduction biology range from a defense of traditional definitions, with some modifications, to acceptance of more radical responses, including assisted migration, taxon substitution, de-extinction, and genetic modification. Rewilding attempts to minimize sustained intervention, but this hands-off approach is also threatened by rapid environmental change.
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Affiliation(s)
- Richard T Corlett
- Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan 666303, China.
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39
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Boyer S, Case BS, Lefort MC, Waterhouse BR, Wratten SD. Can ecosystem-scale translocations mitigate the impact of climate change on terrestrial biodiversity? Promises, pitfalls, and possibilities: Ecosystem-scale translocations. F1000Res 2016; 5:146. [PMID: 26989475 PMCID: PMC4784018 DOI: 10.12688/f1000research.7914.1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 02/02/2016] [Indexed: 11/20/2022] Open
Abstract
Because ecological interactions are the first components of the ecosystem to be impacted by climate change, future forms of threatened-species and ecosystem management should aim at conserving complete, functioning communities rather than single charismatic species. A possible way forward is the deployment of ecosystem-scale translocation (EST), where above- and below-ground elements of a functioning terrestrial ecosystem (including vegetation and topsoil) are carefully collected and moved together. Small-scale attempts at such practice have been made for the purpose of ecological restoration. By moving larger subsets of functioning ecosystems from climatically unstable regions to more stable ones, EST could provide a practical means to conserve mature and complex ecosystems threatened by climate change. However, there are a number of challenges associated with EST in the context of climate change mitigation, in particular the choice of donor and receptor sites. With the aim of fostering discussion and debate about the EST concept, we 1) outline the possible promises and pitfalls of EST in mitigating the impact of climate change on terrestrial biodiversity and 2) use a GIS-based approach to illustrate how potential source and receptor sites, where EST could be trialed and evaluated globally, could be identified.
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Affiliation(s)
- Stéphane Boyer
- Department of Natural Sciences, Faculty of Social and Health Sciences, Unitec Institute of Technology, Auckland, New Zealand; The Bio-Protection Research Centre, Lincoln University, Lincoln, New Zealand
| | - Bradley S Case
- Department of Informatics and Enabling Technologies, Faculty of Environment, Society and Design, Lincoln University, Lincoln, New Zealand
| | - Marie-Caroline Lefort
- Department of Natural Sciences, Faculty of Social and Health Sciences, Unitec Institute of Technology, Auckland, New Zealand; The Bio-Protection Research Centre, Lincoln University, Lincoln, New Zealand
| | | | - Stephen D Wratten
- The Bio-Protection Research Centre, Lincoln University, Lincoln, New Zealand
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White TH, de Melo Barros Y, Develey PF, Llerandi-Román IC, Monsegur-Rivera OA, Trujillo-Pinto AM. Improving reintroduction planning and implementation through quantitative SWOT analysis. J Nat Conserv 2015. [DOI: 10.1016/j.jnc.2015.10.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Science for a wilder Anthropocene: Synthesis and future directions for trophic rewilding research. Proc Natl Acad Sci U S A 2015; 113:898-906. [PMID: 26504218 DOI: 10.1073/pnas.1502556112] [Citation(s) in RCA: 243] [Impact Index Per Article: 24.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Trophic rewilding is an ecological restoration strategy that uses species introductions to restore top-down trophic interactions and associated trophic cascades to promote self-regulating biodiverse ecosystems. Given the importance of large animals in trophic cascades and their widespread losses and resulting trophic downgrading, it often focuses on restoring functional megafaunas. Trophic rewilding is increasingly being implemented for conservation, but remains controversial. Here, we provide a synthesis of its current scientific basis, highlighting trophic cascades as the key conceptual framework, discussing the main lessons learned from ongoing rewilding projects, systematically reviewing the current literature, and highlighting unintentional rewilding and spontaneous wildlife comebacks as underused sources of information. Together, these lines of evidence show that trophic cascades may be restored via species reintroductions and ecological replacements. It is clear, however, that megafauna effects may be affected by poorly understood trophic complexity effects and interactions with landscape settings, human activities, and other factors. Unfortunately, empirical research on trophic rewilding is still rare, fragmented, and geographically biased, with the literature dominated by essays and opinion pieces. We highlight the need for applied programs to include hypothesis testing and science-based monitoring, and outline priorities for future research, notably assessing the role of trophic complexity, interplay with landscape settings, land use, and climate change, as well as developing the global scope for rewilding and tools to optimize benefits and reduce human-wildlife conflicts. Finally, we recommend developing a decision framework for species selection, building on functional and phylogenetic information and with attention to the potential contribution from synthetic biology.
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Pauli JN, Moss WE, Manlick PJ, Fountain ED, Kirby R, Sultaire SM, Perrig PL, Mendoza JE, Pokallus JW, Heaton TH. Examining the uncertain origin and management role of martens on Prince of Wales Island, Alaska. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2015; 29:1257-1267. [PMID: 25855043 DOI: 10.1111/cobi.12491] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2014] [Accepted: 01/14/2015] [Indexed: 06/04/2023]
Abstract
Conservation biologists are generally united in efforts to curtail the spread of non-native species globally. However, the colonization history of a species is not always certain, and whether a species is considered non-native or native depends on the conservation benchmark. Such ambiguities have led to inconsistent management. Within the Tongass National Forest of Alaska, the status of American marten (Martes americana) on the largest, most biologically diverse and deforested island, Prince of Wales (POW), is unclear. Ten martens were released to POW in the early 1930s, and it was generally believed to be the founding event, although this has been questioned. The uncertainty surrounding when and how martens colonized POW complicates management, especially because martens were selected as a design species for the Tongass. To explore the history of martens of POW we reviewed other plausible routes of colonization; genetically and isotopically analyzed putative marten fossils deposited in the late Pleistocene and early Holocene to verify marten occupancy of POW; and used contemporary genetic data from martens on POW and the mainland in coalescent simulations to identify the probable source of the present-day marten population on POW. We found evidence for multiple routes of colonization by forest-associated mammals beginning in the Holocene, which were likely used by American martens to naturally colonize POW. Although we cannot rule out human-assisted movement of martens by Alaskan Natives or fur trappers, we suggest that martens be managed for persistence on POW. More generally, our findings illustrate the difficulty of labeling species as non-native or native, even when genetic and paleo-ecological data are available, and support the notion that community resilience or species invasiveness should be prioritized when making management decisions rather than more subjective and less certain conservation benchmarks.
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Affiliation(s)
- Jonathan N Pauli
- Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Madison, WI, 53706, U.S.A
| | - Wynne E Moss
- Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Madison, WI, 53706, U.S.A
| | - Philip J Manlick
- Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Madison, WI, 53706, U.S.A
| | - Emily D Fountain
- Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Madison, WI, 53706, U.S.A
| | - Rebecca Kirby
- Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Madison, WI, 53706, U.S.A
| | - Sean M Sultaire
- Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Madison, WI, 53706, U.S.A
| | - Paula L Perrig
- Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Madison, WI, 53706, U.S.A
| | - Jorge E Mendoza
- Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Madison, WI, 53706, U.S.A
| | - John W Pokallus
- Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Madison, WI, 53706, U.S.A
| | - Timothy H Heaton
- Department of Earth Sciences, University of South Dakota, Vermillion, SD, 57069, U.S.A
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Campbell K, Hofreiter M. Resurrecting phenotypes from ancient DNA sequences: promises and perspectives. CAN J ZOOL 2015. [DOI: 10.1139/cjz-2014-0337] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Anatomical changes in extinct mammalian lineages over evolutionary time, such as the loss of fingers and teeth and the rapid increase in body size that accompanied the late Miocene dispersal of the progenitors of Steller’s sea cows (Hydrodamalis gigas (Zimmermann, 1780)) into North Pacific waters and the convergent development of a thick pelage and accompanying reductions in ear and tail surface area of woolly mammoths (Mammuthus primigenius (Blumenbach, 1799)) and woolly rhinoceros (Coelodonta antiquitatis (Blumenbach, 1799)), are prime examples of adaptive evolution underlying the exploitation of new habitats. It is likely, however, that biochemical specializations adopted during these evolutionary transitions were of similar or even greater biological importance. As these “living” processes do not fossilize, direct information regarding the physiological attributes of extinct species has largely remained beyond the range of scientific inquiry. However, the ability to retrieve genomic sequences from ancient DNA samples, combined with ectopic expression systems, now permit the evolutionary origins and structural and functional properties of authentic prehistoric proteins to be examined in great detail. Exponential technical advances in ancient DNA retrieval, enrichment, and sequencing will soon permit targeted generation of complete genomes from hundreds of extinct species across the last one million years that, in combination with emerging in vitro expression, genome engineering, and cell differentiation techniques, promises to herald an exciting new trajectory of evolutionary research at the interface of biochemistry, genomics, palaeontology, and cell biology.
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Affiliation(s)
- K.L. Campbell
- Department of Biological Sciences, University of Manitoba, Winnipeg, MB R3T 2N2, Canada
| | - M. Hofreiter
- Faculty of Mathematics and Life Sciences, Institute of Biochemistry and Biology, Unit of General Zoology–Evolutionary Adaptive Genomics, University of Potsdam, Karl-Liebknecht-Straße 24-25, 14476 Potsdam, Germany
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Martinelli L, Oksanen M, Siipi H. De-extinction: a novel and remarkable case of bio-objectification. Croat Med J 2015; 55:423-7. [PMID: 25165057 PMCID: PMC4157387 DOI: 10.3325/cmj.2014.55.423] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
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Saul WC, Jeschke JM. Eco-evolutionary experience in novel species interactions. Ecol Lett 2015; 18:236-45. [DOI: 10.1111/ele.12408] [Citation(s) in RCA: 120] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2014] [Revised: 10/27/2014] [Accepted: 12/11/2014] [Indexed: 12/20/2022]
Affiliation(s)
- Wolf-Christian Saul
- Department of Ecology and Ecosystem Management; Technische Universität München; Emil-Ramann-Str. 6 85354 Freising Germany
- Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB); Müggelseedamm 310 12587 Berlin Germany
- Department of Biology; Chemistry; Pharmacy; Institute of Biology; Freie Universität Berlin; Königin-Luise-Str. 1-3 14195 Berlin Germany
| | - Jonathan M. Jeschke
- Department of Ecology and Ecosystem Management; Technische Universität München; Emil-Ramann-Str. 6 85354 Freising Germany
- Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB); Müggelseedamm 310 12587 Berlin Germany
- Department of Biology; Chemistry; Pharmacy; Institute of Biology; Freie Universität Berlin; Königin-Luise-Str. 1-3 14195 Berlin Germany
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Seddon PJ, Griffiths CJ, Soorae PS, Armstrong DP. Reversing defaunation: restoring species in a changing world. Science 2014; 345:406-12. [PMID: 25061203 DOI: 10.1126/science.1251818] [Citation(s) in RCA: 309] [Impact Index Per Article: 28.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
The rate of biodiversity loss is not slowing despite global commitments, and the depletion of animal species can reduce the stability of ecological communities. Despite this continued loss, some substantial progress in reversing defaunation is being achieved through the intentional movement of animals to restore populations. We review the full spectrum of conservation translocations, from reinforcement and reintroduction to controversial conservation introductions that seek to restore populations outside their indigenous range or to introduce ecological replacements for extinct forms. We place the popular, but misunderstood, concept of rewilding within this framework and consider the future role of new technical developments such as de-extinction.
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Affiliation(s)
- Philip J Seddon
- Department of Zoology, University of Otago, Post Office Box 56, Dunedin, New Zealand.
| | - Christine J Griffiths
- School of Biological Sciences, University of Bristol, Woodland Road, Bristol BS8 1UG, UK
| | | | - Doug P Armstrong
- Institute of Natural Resources, Massey University, Private Bag 11222, Palmerston North, New Zealand
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