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Mersch SA, Bergman S, Sheets ED, Boersma AJ, Heikal AA. Two-photon excited-state dynamics of mEGFP-linker-mScarlet-I crowding biosensor in controlled environments. Phys Chem Chem Phys 2024; 26:3927-3940. [PMID: 38231116 DOI: 10.1039/d3cp04733d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2024]
Abstract
Macromolecular crowding affects many cellular processes such as diffusion, biochemical reaction kinetics, protein-protein interactions, and protein folding. Mapping the heterogeneous, dynamic crowding in living cells or tissues requires genetically encoded, site-specific, crowding sensors that are compatible with quantitative, noninvasive fluorescence micro-spectroscopy. Here, we carried out time-resolved 2P-fluorescence measurements of a new mEGFP-linker-mScarlet-I macromolecular crowding construct (GE2.3) to characterize its environmental sensitivity in biomimetic crowded solutions (Ficoll-70, 0-300 g L-1) via Förster resonance energy transfer (FRET) analysis. The 2P-fluorescence lifetime of the donor (mEGFP) was measured under magic-angle polarization, in the presence (intact) and absence (enzymatically cleaved) of the acceptor (mScarlet-I), as a function of the Ficoll-70 concentration. The FRET efficiency was used to quantify the sensitivity of GE2.3 to macromolecular crowding and to determine the environmental dependence of the mEGFP-mScarlet-I distance. We also carried out time-resolved 2P-fluorescence depolarization anisotropy to examine both macromolecular crowding and linker flexibility effects on GE2.3 rotational dynamics within the context of the Stokes-Einstein model as compared with theoretical predictions based on its molecular weight. These time-resolved 2P-fluorescence depolarization measurements and conformational population analyses of GE2.3 were also used to estimate the free energy gain upon the structural collapse in crowded environment. Our results further the development of a rational engineering design for bioenvironmental sensors without the interference of cellular autofluorescence. Additionally, these results in well-defined environments will inform our future in vivo studies of genetically encoded GE2.3 towards the mapping of the crowded intracellular environment under different physiological conditions.
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Affiliation(s)
- Sarah A Mersch
- Department of Chemistry and Biochemistry, Swenson College of Science and Engineering, University of Minnesota Duluth, Duluth, MN 55812, USA.
| | - Sarah Bergman
- Department of Chemistry and Biochemistry, Swenson College of Science and Engineering, University of Minnesota Duluth, Duluth, MN 55812, USA.
| | - Erin D Sheets
- Department of Chemistry and Biochemistry, Swenson College of Science and Engineering, University of Minnesota Duluth, Duluth, MN 55812, USA.
| | - Arnold J Boersma
- Cellular Protein Chemistry, Bijvoet Centre for Biomolecular Research, Faculty of Science, Utrecht University, Utrecht, The Netherlands
| | - Ahmed A Heikal
- Department of Chemistry and Biochemistry, Swenson College of Science and Engineering, University of Minnesota Duluth, Duluth, MN 55812, USA.
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Avanaki KN, Schatz GC. Entangled Photon Resonance Energy Transfer in Arbitrary Media. J Phys Chem Lett 2019; 10:3181-3188. [PMID: 31117677 DOI: 10.1021/acs.jpclett.9b00902] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Inspired by the unique nonclassical character of two-photon interactions induced by entangled photons, we develop a new comprehensive Förster-type formulation for entangled-two-photon resonance energy transfer (E2P-RET) mediated by inhomogeneous, dispersive, and absorptive media with any space-dependent and frequency-dependent dielectric function and with any size of donor/acceptor. In our theoretical framework, two uncoupled particles are jointly excited by the temporally entangled field associated with two virtual photons that are produced by three-level radiative cascade decay in a donor particle. The temporal entanglement leads to frequency anticorrelation in the virtual photon's field, and vanishing of one of the time-ordered excitation pathways. The underlying mechanism leads to more than 3 orders of magnitude enhancement in the E2P-RET rate compared with the uncorrelated photon case. With the power of our new formulation, we propose a way to characterize E2P-RET through an effective rate coefficient KE2P, introduced here. This coefficient shows how energy transfer can be enhanced or suppressed depending on rate parameters in the radiative cascade, and by varying the donor-acceptor frequency differences.
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Affiliation(s)
- K Nasiri Avanaki
- Department of Chemistry , Northwestern University , 2145 Sheridan Road , Evanston , Illinois 60208-3113 , United States
- Department of Chemistry and Chemical Biology , Harvard University , 12 Oxford Street , Cambridge , Massachusetts 02138 , United States
| | - George C Schatz
- Department of Chemistry , Northwestern University , 2145 Sheridan Road , Evanston , Illinois 60208-3113 , United States
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Perspectives on dendritic architectures and their biological applications: From core to cell. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2017; 173:61-83. [PMID: 28564631 DOI: 10.1016/j.jphotobiol.2017.05.023] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2017] [Revised: 05/15/2017] [Accepted: 05/18/2017] [Indexed: 12/24/2022]
Abstract
The challenges of medicine today include the increasing stipulation for sensitive and effective systems that can improve the pathological responses with a simultaneous reduction in accumulation and drug side effects. The demand can be fulfilled through the advancements in nanomedicine that includes nanostructures and nanodevices for diagnosing, treating, and prevention of various diseases. In this respect, the nanoscience provides various novel techniques with carriers such as micelles, dendrimers, particles and vesicles for the transportation of active moieties. Further, an efficient way to improve these systems is through stimuli a responsive system that utilizes supramolecular hyperbranched structures to meet the above criteria. The stimuli-responsive dendritic architectures exhibit spatial, temporal, convenient, effective, safety and controlled drug release in response to specific trigger through electrostatic interactions plus π stacking. The stimuli-responsive systems are capable of sequestering the drug molecules underneath a predefined set of conditions and discharge them in a different environment through either exogenous or endogenous stimulus. The incorporation of photoresponsive moieties at various components of dendrimer such as core, branches or at the peripheral end exaggerates its significance in various allied fields of nanotechnology which includes sensors, photoswitch, electronic widgets and in drug delivery systems. This is due to the light instigated geometrical modifications at the core or at the surface molecules which generates huge conformational changes throughout the hyperbranched structure. Further, numerous synthetic methodologies have been investigated for utilization of dendrimers in therapeutic drug delivery and its applicability towards stimuli responsive systems such as photo-instigated, thermal-instigated, and pH-instigated hyperbranched structures and their advancement in the field of nanomedicine. This paper highlights the fascinating theoretical advances and principal mechanisms of dendrimer synthesis and their ability to capture light that strengthens its applicability from radiant energy to medical photonics.
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Mechanisms of Light Energy Harvesting in Dendrimers and Hyperbranched Polymers. Polymers (Basel) 2011. [DOI: 10.3390/polym3042053] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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Harada T, Matsuishi K, Oishi Y, Isobe K, Suda A, Kawan H, Mizuno H, Miyawaki A, Midorikawa K, Kannari F. Temporal control of local plasmon distribution on Au nanocrosses by ultra-broadband femtosecond laser pulses and its application for selective two-photon excitation of multiple fluorophores. OPTICS EXPRESS 2011; 19:13618-13627. [PMID: 21747518 DOI: 10.1364/oe.19.013618] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
We theoretically demonstrate spatiotemporal control of local plasmon distribution on Au nanocrosses, which have different aspect ratios, by chirped ultra-broadband femtosecond laser pulses. We also demonstrate selective excitation of fluorescence proteins using this spatiotemporal local plasmon control technique for applications to two-photon excited fluorescence microscopy.
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Affiliation(s)
- Takuya Harada
- Department of Electronics and Electrical Engineering, Keio University, Kohoku-ku, Yokohama, Japan
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Hashimoto H, Isobe K, Suda A, Kannari F, Kawano H, Mizuno H, Miyawaki A, Midorikawa K. Measurement of two-photon excitation spectra of fluorescent proteins with nonlinear Fourier-transform spectroscopy. APPLIED OPTICS 2010; 49:3323-9. [PMID: 20539351 DOI: 10.1364/ao.49.003323] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
We present measurements of two-photon excitation (TPE) spectra of various fluorescent proteins with nonlinear Fourier-transform spectroscopy. By using an ultrabroadband laser pulse with a spectrum ranging from 700 to 1100 nm, the absolute TPE spectra of six typical fluorescent proteins (SeBFP, Sapphire, eGFP, eCFP, Venus, DsRed) were measured with high spectral resolution.
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Affiliation(s)
- Hiroshi Hashimoto
- RIKEN Advanced Science Institute, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
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Opanasyuk O, Johansson LBÅ. Extended Förster theory: a quantitative approach to the determination of inter-chromophore distances in biomacromolecules. Phys Chem Chem Phys 2010; 12:7758-67. [DOI: 10.1039/b924113b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Isobe K, Suda A, Tanaka M, Kannari F, Kawano H, Mizuno H, Miyawaki A, Midorikawa K. Multifarious control of two-photon excitation of multiple fluorophores achieved by phase modulation of ultra-broadband laser pulses. OPTICS EXPRESS 2009; 17:13737-46. [PMID: 19654781 DOI: 10.1364/oe.17.013737] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
We propose two-photon excited fluorescence (TPEF) microscopy employing a novel phase modulation technique of ultra-broadband laser pulses, which allows the relative excitation of an individual fluorophore with respect to other fluorophores. This technique is based on the generation of multi-wavelength pulse train, which independently interacts with each fluorophore. Our technique is applied to dual-color imaging of cells expressing two types of fluorescent proteins. We achieve the selective excitation of one over the other and vice versa. The product of the maximum contrast ratios exceeds 100. We also demonstrate yielded equal excitation rates in the simultaneous excitation. By the selective excitation of a donor fluorescent protein, fluorescence resonance energy transfer imaging is also achieved.
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Affiliation(s)
- Keisuke Isobe
- Laser Technology Laboratory, RIKEN Advanced Science Institute, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.
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He GS, Tan LS, Zheng Q, Prasad PN. Multiphoton Absorbing Materials: Molecular Designs, Characterizations, and Applications. Chem Rev 2008; 108:1245-330. [PMID: 18361528 DOI: 10.1021/cr050054x] [Citation(s) in RCA: 1232] [Impact Index Per Article: 72.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Juzeliūnas G, Andrews DL. Quantum Electrodynamics of Resonance Energy Transfer. ADVANCES IN CHEMICAL PHYSICS 2007. [DOI: 10.1002/9780470141717.ch4] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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Bradshaw DS, Andrews DL. Competing mechanisms for energy transfer in two-photon absorbing systems. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2006.08.116] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Andrews DL, Bradshaw DS. Optically nonlinear energy transfer in light-harvesting dendrimers. J Chem Phys 2004; 121:2445-54. [PMID: 15260800 DOI: 10.1063/1.1769354] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Dendrimeric polymers are the subject of intense research activity geared towards their implementation in nanodevice applications such as energy harvesting systems, organic light-emitting diodes, photosensitizers, low-threshold lasers, and quantum logic elements, etc. A recent development in this area has been the construction of dendrimers specifically designed to exhibit novel forms of optical nonlinearity, exploiting the unique properties of these materials at high levels of photon flux. Starting from a thorough treatment of the underlying theory based on the principles of molecular quantum electrodynamics, it is possible to identify and characterize several optically nonlinear mechanisms for directed energy transfer and energy pooling in multichromophore dendrimers. Such mechanisms fall into two classes: first, those where two-photon absorption by individual donors is followed by transfer of the net energy to an acceptor; second, those where the excitation of two electronically distinct but neighboring donor groups is followed by a collective migration of their energy to a suitable acceptor. Each transfer process is subject to minor dissipative losses. In this paper we describe in detail the balance of factors and the constraints that determines the favored mechanism, which include the excitation statistics, structure of the energy levels, laser coherence factors, chromophore selection rules and architecture, possibilities for the formation of delocalized excitons, spectral overlap, and the overall distribution of donors and acceptors. Furthermore, it transpires that quantum interference between different mechanisms can play an important role. Thus, as the relative importance of each mechanism determines the relevant nanophotonic characteristics, the results reported here afford the means for optimizing highly efficient light-harvesting dendrimer devices.
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Affiliation(s)
- David L Andrews
- Nanostructures and Photomolecular Systems, School of Chemical Sciences, University of East Anglia, Norwich NR4 7TJ, UK.
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Andrews DL, Jenkins RD. A quantum electrodynamical theory of three-center energy transfer for upconversion and downconversion in rare earth doped materials. J Chem Phys 2001. [DOI: 10.1063/1.1323958] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Walla PJ, Yom J, Krueger BP, Fleming GR. Two-Photon Excitation Spectrum of Light-Harvesting Complex II and Fluorescence Upconversion after One- and Two-Photon Excitation of the Carotenoids. J Phys Chem B 2000. [DOI: 10.1021/jp9943023] [Citation(s) in RCA: 104] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Peter J. Walla
- Department of Chemistry, University of California at Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Jenny Yom
- Department of Chemistry, University of California at Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Brent P. Krueger
- Department of Chemistry, University of California at Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Graham R. Fleming
- Department of Chemistry, University of California at Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
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Jenkins RD, Andrews DL. Three-Center Systems for Energy Pooling: Quantum Electrodynamical Theory. J Phys Chem A 1998. [DOI: 10.1021/jp983071h] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Robert D. Jenkins
- School of Chemical Sciences, University of East Anglia, Norwich, NR4 7TJ, United Kingdom
| | - David L. Andrews
- School of Chemical Sciences, University of East Anglia, Norwich, NR4 7TJ, United Kingdom
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