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Hunde D, Tadesse Y, Tadesse M, Abegaz S, Getachew T. Community-based breeding programs can realize sustainable genetic gain and economic benefits in tropical dairy cattle systems. Front Genet 2024; 15:1106709. [PMID: 38818034 PMCID: PMC11137272 DOI: 10.3389/fgene.2024.1106709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Accepted: 04/11/2024] [Indexed: 06/01/2024] Open
Abstract
Implementing an appropriate breeding program is crucial to control fluctuation in performance, enhance adaptation, and further improve the crossbred population of dairy cattle. Five alternative breeding programs (BPs) were modeled considering available breeding units in the study area, the existing crossbreeding practices, and the future prospects of dairy research and development in Ethiopia. The study targeted 143,576 crossbred cows of 54,822 smallholder households in the Arsi, West Shewa, and North Shewa zones of the Oromia Region, as well as the North Shewa zone of the Amhara Region. The alternative BPs include conventional on-station progeny testing (SPT), conventional on-farm progeny testing (FPT), conventional on-station and on-farm progeny testing (SFPT), genomic selection (GS), and genomic progeny testing (GPT). Input parameters for modeling the BPs were taken from the analysis of long-term data obtained from the Holetta Agricultural Research Center and a survey conducted in the study area. ZPLAN+ software was used to predict estimates of genetic gain (GG) and discounted profit for goal traits. The predicted genetic gains (GGs) for milk yield (MY) per year were 34.52 kg, 49.63 kg, 29.35 kg, 76.16 kg, and 77.51 kg for SPT, FPT, SFPT, GS, and GPT, respectively. The GGs of the other goal traits range from 0.69 to 1.19 days per year for age at first calving, from 1.20 to 2.35 days per year for calving interval, and from 0.06 to 0.12 days per year for herd life. Compared to conventional BPs, genomic systems (GPT and GS) enhanced the GG of MY by 53%-164%, reduced generation interval by up to 21%, and improved the accuracy of test bull selection from 0.33 to 0.43. The discounted profit of the BPs varied from 249.58 Ethiopian Birr (ETB, 1 USD = 39.55696 ETB) per year in SPT to 689.79 ETB per year in GS. Genomic selection outperforms SPT, SFPT, and FPT by 266, 227%, and 138% of discounted profit, respectively. Community-based crossbreeding accompanied by GS and gradual support with progeny testing (GPT) is recommended as the main way forward to attain better genetic progress in dairy farms in Ethiopia and similar scenarios in other tropical countries.
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Affiliation(s)
- Direba Hunde
- Ethiopian Institute of Agricultural Research, Holetta Center, Holetta, Ethiopia
- Department of Animal Science, Haramaya University, Harar, Ethiopia
| | - Yosef Tadesse
- Department of Animal Science, Haramaya University, Harar, Ethiopia
| | - Million Tadesse
- Ethiopian Institute of Agricultural Research, Holetta Center, Holetta, Ethiopia
| | | | - Tesfaye Getachew
- International Center for Agricultural Research in the Dry Areas, Addis Ababa, Ethiopia
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Heritability and genetic correlation of body weight and Kleiber ratio in Limousin and Charolais beef cattle breeds. Animal 2022; 16:100528. [PMID: 35483174 DOI: 10.1016/j.animal.2022.100528] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 03/23/2022] [Accepted: 03/25/2022] [Indexed: 11/22/2022] Open
Abstract
Reducing the environmental impact of livestock production is now indispensable and genetic selection can be of great support for this purpose. Measures that can identify high body growth at low maintenance costs in production animals are particularly useful since resources have been increasingly limited. Therefore, the goal of this study was to estimate genetic parameters for BW and Kleiber ratio (KR) in 210-day-old and 365-day-old Charolais and Limousin breeds. A database comprising animals born from 1999 to 2018 was used in a multitrait model applying Bayesian inference. The heritability for BW is high in Charolais (0.39 and 0.42 for BW210 and BW365, respectively) and moderate in Limousin (0.22), indicating possible genetic gains for BW in both breeds. The genetic variability of KR should also allow satisfactory genetic gains. In addition, the genetic correlation between BW and KR ranged from low to moderate. Thus, selection over KR should have no effects on BW, showing that high body growth can be obtained without changes in efficiency.
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Ellison M, Cockrum R, Means W, Meyer A, Ritten J, Austin K, Cammack K. Effects of feed efficiency and diet on performance and carcass characteristics in growing wether lambs. Small Rumin Res 2022. [DOI: 10.1016/j.smallrumres.2021.106611] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Li J, Mukiibi R, Wang Y, Plastow GS, Li C. Identification of candidate genes and enriched biological functions for feed efficiency traits by integrating plasma metabolites and imputed whole genome sequence variants in beef cattle. BMC Genomics 2021; 22:823. [PMID: 34781903 PMCID: PMC8591823 DOI: 10.1186/s12864-021-08064-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Accepted: 10/07/2021] [Indexed: 12/14/2022] Open
Abstract
BACKGROUND Feed efficiency is one of the key determinants of beef industry profitability and sustainability. However, the cellular and molecular background behind feed efficiency is largely unknown. This study combines imputed whole genome DNA variants and 31 plasma metabolites to dissect genes and biological functions/processes that are associated with residual feed intake (RFI) and its component traits including daily dry matter intake (DMI), average daily gain (ADG), and metabolic body weight (MWT) in beef cattle. RESULTS Regression analyses between feed efficiency traits and plasma metabolites in a population of 493 crossbred beef cattle identified 5 (L-valine, lysine, L-tyrosine, L-isoleucine, and L-leucine), 4 (lysine, L-lactic acid, L-tyrosine, and choline), 1 (citric acid), and 4 (L-glutamine, glycine, citric acid, and dimethyl sulfone) plasma metabolites associated with RFI, DMI, ADG, and MWT (P-value < 0.1), respectively. Combining the results of metabolome-genome wide association studies using 10,488,742 imputed SNPs, 40, 66, 15, and 40 unique candidate genes were identified as associated with RFI, DMI, ADG, and MWT (P-value < 1 × 10-5), respectively. These candidate genes were found to be involved in some key metabolic processes including metabolism of lipids, molecular transportation, cellular function and maintenance, cell morphology and biochemistry of small molecules. CONCLUSIONS This study identified metabolites, candidate genes and enriched biological functions/processes associated with RFI and its component traits through the integrative analyses of metabolites with phenotypic traits and DNA variants. Our findings could enhance the understanding of biochemical mechanisms of feed efficiency traits and could lead to improvement of genomic prediction accuracy via incorporating metabolite data.
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Affiliation(s)
- Jiyuan Li
- Department of Agriculture, Food & Nutritional Science, University of Alberta, T6G 2P5, Edmonton, Alberta, Canada
| | - Robert Mukiibi
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, Scotland, UK
| | - Yining Wang
- Department of Agriculture, Food & Nutritional Science, University of Alberta, T6G 2P5, Edmonton, Alberta, Canada
- Lacombe Research and Development Centre, Agriculture and Agri-Food Canada, 6000 C&E Trail, Alberta, T4L 1W1, Lacombe, Canada
| | - Graham S Plastow
- Department of Agriculture, Food & Nutritional Science, University of Alberta, T6G 2P5, Edmonton, Alberta, Canada.
| | - Changxi Li
- Department of Agriculture, Food & Nutritional Science, University of Alberta, T6G 2P5, Edmonton, Alberta, Canada.
- Lacombe Research and Development Centre, Agriculture and Agri-Food Canada, 6000 C&E Trail, Alberta, T4L 1W1, Lacombe, Canada.
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Fennessy PF, Byrne TJ, Proctor LE, Amer PR. The potential impact of breeding strategies to reduce methane output from beef cattle. ANIMAL PRODUCTION SCIENCE 2019. [DOI: 10.1071/an18186] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The present paper provides an indication (using selection index theory) of the contribution of genetics to a reduction in methane emissions through the current selection for productivity traits (defined as the inherent rate). This is then compared with potential new approaches that incorporate measurements or estimates of methane production as selection criteria. The predicted value of the inherent reduction in methane at a price (all costs and prices are in Australian dollars) of $25/t carbon dioxide equivalent (CO2-e; methane × 25) is $0.38/cow mated per year. The direct value of the estimated annual genetic gain in productivity (about $3/cow mated) is about eight times the value of the savings in methane. The value of the carbon savings doubles to ~$0.75 if methane yield (methane per unit feed intake) is included in the index. This is due to a reduction in methane emissions of 0.78% of the mean (1.20 kg methane/cow mated per year at a carbon cost of $25/t CO2-e) which increases to 1.0% at $50/t CO2-e. If selection is on methane alone, the annual response is ~1.45%, which is valued at $1.39 at a price of $25/t CO2-e. However, adoption is less than 100% at the breeder level, so that realised gains will be less than predicted here.
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Barwick SA, Henzell AL, Walmsley BJ, Johnston DJ, Banks RG. Methods and consequences of including feed intake and efficiency in genetic selection for multiple-trait merit. J Anim Sci 2018. [PMID: 29529227 DOI: 10.1093/jas/sky049] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Methods are presented for including feed intake and efficiency in genetic selection for multiple-trait merit when commercial production is from any combination of pasture or concentrates. Consequences for the production system and for individual animals are illustrated with a beef cattle example. Residual feed intake at pasture (RFI-p), residual feed intake in the feedlot (RFI-f), and cow condition score are additional traits of the breeding objective. Feed requirement change is costed in the economic values of other objective traits. Selection responses are examined when feed costs are ignored, partially or fully included in the breeding objective, and when net feed intake (NFI) EBVs are added to the index. When all feed cost was included and NFI EBVs were in the index, selection (with selection intensity, i = 1) increased production system $ net return by 6.0%, $ per unit of product by 5.2%, $ per unit of feed by 6.6%, total product by 0.7% and product per unit of feed by 1.3%. There was little change in production system total feed. When feed cost was ignored, selection decreased production system $ net return, $ per unit of product, and $ per unit of feed. At the individual trait level, when feed was fully included there were increases in weaning weight-direct (0.8 kg), feedlot entry weight (1.4 kg), dressing % (0.04%), carcass meat % (0.36%), carcase fat depth (0.12 mm), carcass marbling score (0.02 score), cow condition score (0.01 score), calving ease-direct (0.97%), calving ease-maternal (0.22%) and cow weaning rate (1.3%), and decreases in weaning weight-maternal (-0.9 kg), RFI-p (-0.09 kg DM/d), RFI-f (-0.11 kg DM/d), sale weight (-1.6 kg) and cow weight (-8.7 kg). Gains were evident over a range of feed price. Selection for $ net return also increased $ net return per unit of feed, suggesting that $ net return per unit area would increase in grazing industries. Feed cost for trait change was the source of a major genotype × environment interaction affecting animal rankings. Where industry production environments vary, and feed cost for trait change varies with the environment, we recommend that industry indexes be derived for more than one level of feed cost. Cow condition score did not decline while biological and economic efficiency of the production system and individual animal were improving, suggesting that efficiency can be improved under multiple-trait selection without compromising breeding cow welfare.
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Affiliation(s)
- Stephen A Barwick
- Animal Genetics and Breeding Unit (A joint venture of NSW Department of Primary Industries and the University of New England), University of New England, Armidale, NSW Australia
| | - Anthony L Henzell
- Animal Genetics and Breeding Unit (A joint venture of NSW Department of Primary Industries and the University of New England), University of New England, Armidale, NSW Australia
| | - Brad J Walmsley
- Animal Genetics and Breeding Unit (A joint venture of NSW Department of Primary Industries and the University of New England), University of New England, Armidale, NSW Australia
| | - David J Johnston
- Animal Genetics and Breeding Unit (A joint venture of NSW Department of Primary Industries and the University of New England), University of New England, Armidale, NSW Australia
| | - Robert G Banks
- Animal Genetics and Breeding Unit (A joint venture of NSW Department of Primary Industries and the University of New England), University of New England, Armidale, NSW Australia
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Favero R, Mizubuti I, Gomes R, Ribeiro E, Pereira E, Prado-Calixto O, Massaro Júnior F, Santos A. Relationships between residual feed intake and feedlot performance, profitability, and carcass traits in Brahman cattle. ARQ BRAS MED VET ZOO 2018. [DOI: 10.1590/1678-4162-9526] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
ABSTRACT The present study aimed to evaluate the feedlot performance, profitability and carcass traits of Brahman bulls classified according to the residual feed intake (RFI). Twenty-four bulls (19-month old, 370±34kg live weight) were housed in individual pens for 54 days and had the daily feed intake (observed dry matter intake, DMIobs; DMI % live weight, LW) and average daily gain (ADG) measured. Ultrasound carcass evaluations were performed at the initial and final weighings, when measurements were taken of Longissimus dorsi area, ratio, Longissimus and Biceps femoris fat thickness. The animals were ranked and divided into high (>+0.5 standard deviation; SD), medium (between ±0.5 SD from the mean), and low (<-0.5 SD) RFI groups. Low-RFI animals had lower DMIobs (P<0.10) and DMI % LW (P<0.05). No significant differences in initial and final weight or ADG were noticed (P>0.05). Low-RFI animals showed lower weight gain cost and higher daily profit (P<0.05). Carcass traits were similar between groups, regardless of evaluation date (P>0.05). Selection for RFI lead to animals with lower feed intake without affecting weight gain or carcass traits, thereby providing increased profitability for beef cattle farming.
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Affiliation(s)
- R. Favero
- Universidade Estadual de Londrina, Brazil
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Dai P, Luan S, Lu X, Luo K, Meng X, Cao B, Kong J. Genetic assessment of residual feed intake as a feed efficiency trait in the Pacific white shrimp Litopenaeus vannamei. Genet Sel Evol 2017; 49:61. [PMID: 28778143 PMCID: PMC5545049 DOI: 10.1186/s12711-017-0334-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2016] [Accepted: 07/12/2017] [Indexed: 12/04/2022] Open
Abstract
BACKGROUND Residual feed intake (RFI) was investigated as a measure of feed efficiency in a breeding population of Litopenaeus vannamei. Shrimp from 34 families were housed individually and feed efficiency and growth traits were recorded during two successive growth periods. The objectives of this study were (1) to estimate the heritability of RFI and related traits, including feed efficiency ratio (FER), average daily gain (ADG) and daily feed intake (DFI), (2) to determine the relationships between RFI and other traits, and (3) to evaluate the variation of these traits across two growth periods. RESULTS Shrimp displayed large inter-individual variation in RFI, FER, ADG and DFI during each growth period. Heritability estimates of all these traits during both periods reached high values (0.577 ± 0.232 to 0.707 ± 0.252). RFI showed weak and no genetic correlations with ADG during the two growth periods between days 1 to 21 (0.135 ± 0.204) and 22 to 42 (-0.018 ± 0.128), respectively, but high positive genetic correlations with DFI (>0.8). Weak and moderate negative genetic correlations were observed between RFI and FER during the two periods (-0.126 ± 0.208 and -0.387 ± 0.183). As evidenced by the high genetic correlations between the two periods for each trait (>0.6), trait performance of the shrimp tended to be consistent across periods. CONCLUSIONS For the first time, accurate measurement of individual feed efficiency on a large scale was achieved in shrimp. Although the estimated heritability reported here for RFI may be overestimated, it is a heritable trait in L. vannamei that can be improved by genetic improvement. For L. vannamei, the biggest potential advantage in using RFI as a measure of feed efficiency is that it is independent of growth rate, and thus genetic selection on RFI has the potential to improve feed efficiency and reduce feed intake, without compromising growth performance.
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Affiliation(s)
- Ping Dai
- Key Laboratory for Sustainable Utilization of Marine Fisheries Resources, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071 China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, National Laboratory for Marine Science and Technology, Qingdao, 266235 China
| | - Sheng Luan
- Key Laboratory for Sustainable Utilization of Marine Fisheries Resources, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071 China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, National Laboratory for Marine Science and Technology, Qingdao, 266235 China
| | - Xia Lu
- Key Laboratory for Sustainable Utilization of Marine Fisheries Resources, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071 China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, National Laboratory for Marine Science and Technology, Qingdao, 266235 China
| | - Kun Luo
- Key Laboratory for Sustainable Utilization of Marine Fisheries Resources, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071 China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, National Laboratory for Marine Science and Technology, Qingdao, 266235 China
| | - Xianhong Meng
- Key Laboratory for Sustainable Utilization of Marine Fisheries Resources, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071 China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, National Laboratory for Marine Science and Technology, Qingdao, 266235 China
| | - Baoxiang Cao
- Key Laboratory for Sustainable Utilization of Marine Fisheries Resources, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071 China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, National Laboratory for Marine Science and Technology, Qingdao, 266235 China
| | - Jie Kong
- Key Laboratory for Sustainable Utilization of Marine Fisheries Resources, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071 China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, National Laboratory for Marine Science and Technology, Qingdao, 266235 China
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Cottle D, van der Werf J. Optimising the proportion of selection candidates measured for feed intake for a beef cattle breeding objective that includes methane emissions1. J Anim Sci 2017; 95:1030-1041. [DOI: 10.2527/jas.2016.1177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Perkins SD, Key CN, Marvin MN, Garrett CF, Foradori CD, Bratcher CL, Kriese-Anderson LA, Brandebourg TD. Effect of residual feed intake on hypothalamic gene expression and meat quality in Angus-sired cattle grown during the hot season. J Anim Sci 2014; 92:1451-61. [PMID: 24663166 DOI: 10.2527/jas.2013-7020] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The relationship between heat stress, meat quality, and residual feed intake (RFI) is unknown in growing steers. To address this issue, high RFI (HRFI) and low RFI (LRFI) individuals were compared by assessing RFI in 48 Angus-sired steers during a 70-d feeding trial conducted during July through September to identify steers with calculated RFI at least 2 SD apart. The association of RFI with indices of meat quality and expression of genes within hypothalamic and adipose tissue was then determined in LRFI and HRFI steers. While on test, feed intake was recorded daily with BW and hip heights recorded every 14 d. Ultrasound measurements of rib eye area (REA) and backfat (BF) were recorded initially and before harvest. Carcass and growth data were analyzed using a mixed model with RFI level (LRFI and HRFI) as the independent variable. The least square means for RFI were -1.2 and 0.99 kg DMI/d, respectively, for the LRFI and HRFI cohorts (P < 0.0001). Dry matter intake was higher for the HRFI individuals versus the LRFI steers (P < 0.0001) while on-test gain was not different (P < 0.95). Marbling score was greater in LRFI than HRFI steers (P < 0.05). However, there were no differences in REA (P < 0.53), BF (P < 0.65), yield grade (P < 0.24), or objective Hunter color measures between LRFI and HRFI steers indicating there was no consistent relationship between RFI and indices of meat quality. Hypothalamic neuropeptide Y (NPY), agouti related protein (AGRP), relaxin-3 (RLN3), melanocortin 3 receptor, and relaxin/insulin-like family peptide receptor 1 (RXFP1) mRNA were expressed 280, 185, 202, 183, and 163% greater, respectively (P < 0.01), while proopiomelanocortin (POMC) mRNA was expressed 42% lower in LRFI than HRFI animals (P < 0.05). Hypothalamic GnRH mRNA expression was 67% lower while gonadotropin inhibiting hormone (GnIH) mRNA was 209% higher in LRFI than HRFI animals (P < 0.01). Pituitary expression of FSHβ and LHβ correlated to hypothalamic GnRH levels (P < 0.05) indicating changes in gene expression within the hypothalamus had functional consequences. Leptin mRNA expression levels were not different between adipose tissue of LRFI or HRFI steers (P < 0.84). These data indicate that animals with superior RFI evaluated during warm conditions have higher expression of orexigenic neuropeptide genes independent of the expression of adipose-derived leptin. Furthermore, the gonadotropin axis may also influence feed efficiency under these conditions.
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Affiliation(s)
- S D Perkins
- Department of Animal Sciences, Auburn University, Auburn, AL 36849
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Grion AL, Mercadante MEZ, Cyrillo JNSG, Bonilha SFM, Magnani E, Branco RH. Selection for feed efficiency traits and correlated genetic responses in feed intake and weight gain of Nellore cattle. J Anim Sci 2014; 92:955-65. [PMID: 24492579 DOI: 10.2527/jas.2013-6682] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The objectives of this study were to estimate genetic parameters for indicator traits of feed efficiency and to recommend traits that would result in better responses to selection for increased weaning weight (weaning weight adjusted to 210 d of age [W210]), ADG, and metabolic BW (BW(0.75)) and lower DMI. Records of W210 from 8,004 Nellore animals born between 1978 and 2011 and postweaning performance test records from 678 males and females born between 2004 and 2011 were used. The following feed efficiency traits were evaluated: G:F, partial efficiency of growth (PEG), relative growth rate (RGR), Kleiber's ratio (KR), residual feed intake (RFI), residual weight gain (RWG), and residual intake and gain (RIG). Covariance and variance components were estimated by the restricted maximum likelihood method using multitrait analysis under an animal model. Estimates of genetic gain and correlated responses were obtained considering single-stage and 2-stage selection. Heritability estimates were 0.22 ± 0.03 (W210), 0.60 ± 0.08 (DMI), 0.42 ± 0.08 (ADG), 0.56 ± 0.06 (BW(0.75)), 0.19 ± 0.07 (G:F), 0.25 ± 0.09 (PEG), 0.19 ± 0.07 (RGR), 0.22 ± 0.07 (KR), 0.33 ± 0.10 (RFI), 0.13 ± 0.07 (RWG), and 0.19 ± 0.08 (RIG). The genetic correlations of DMI with W210 (0.64 ± 0.10), ADG (0.87 ± 0.06), and BW(0.75) (0.84 ± 0.05) were high. The only efficiency traits showing favorable responses to selection for lower DMI were G:F, PEG, RFI, and RIG. However, the use of G:F, PEG, or RFI as a selection criterion results in unfavorable correlated responses in some growth traits. The linear combination of RFI and RWG through RIG is the best selection criterion to obtain favorable responses in postweaning growth and feed intake of Nellore cattle in single-stage selection. Genetic gains in feed efficiency are expected even after preselection for W210 and subsequent feed efficiency testing of the preselected animals.
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Affiliation(s)
- A L Grion
- Instituto de Zootecnia, Centro APTA Bovinos de Corte. Sertãozinho, SP, Brazil, 14160-970
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Wolcott ML, Johnston DJ, Barwick SA, Corbet NJ, Burrow HM. Genetic relationships between steer performance and female reproduction and possible impacts on whole herd productivity in two tropical beef genotypes. ANIMAL PRODUCTION SCIENCE 2014. [DOI: 10.1071/an13141] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Steer growth and carcass composition, and female reproductive performance have been identified as key aspects of productivity by breeders of tropically adapted beef cattle in Australia. Research has also demonstrated that traits describing meat quality and feed intake and efficiency are of economic importance to Australia’s beef industry. The present study aimed to determine genetic relationships of traits describing steer growth, feed intake and efficiency, carcass composition and meat quality with female reproductive performance in two genotypes of tropically adapted beef cattle. Female reproduction traits describing outcomes of first (Mating 1) and second (Mating 2) annual matings and lifetime reproduction (averaged over 6 matings) were analysed for 1020 Brahman (BRAH) and 1117 Tropical Composite (TCOMP) females. Steer traits were available for 1007 BRAH and 1210 TCOMP half-sibs of the females evaluated for reproductive performance, and measurements of liveweight and body composition for 1025 BRAH and 1520 TCOMP bull progeny of the same females were included in the analysis. Results demonstrated that selection to increase steer carcass weight and eye muscle area and decrease carcass fat depth would have no significant unfavourable impact on female reproductive performance for both genotypes. Measures of liveweight, eye muscle area and P8 fat depth in young BRAH bulls, however, were only moderately correlated with steer carcass equivalents (rg = 0.28 to 0.55) and results showed that selection on the basis of bull measurements alone may negatively affect female lifetime annual calving rate (rg = –0.44 to –0.75) if both were not included in a multi-trait genetic evaluation and considered when making selection decisions. More favourable (lower) net feed intake in BRAH steers was genetically associated with lower Mating 1 weaning rate (rg = 0.76) and higher days to calving (rg = –0.50), although this did not significantly affect lifetime annual calving or weaning rate (rg = 0.10 and 0.29, respectively). For TCOMP, higher steer carcass P8 fat depth was unfavourably genetically associated with female Mating 2 weaning rate (rg = –0.76), although these relationships were not as strong for weaning rate at Mating 1 or when averaged over the animals lifetime (rg = 0.43 and –0.13, respectively). Lower (more favourable) shear force (a measure of tenderness) also displayed a significant genetic association with higher (less favourable) Mating 1 days to calving in TCOMP and, while standard errors were high, tended to be unfavourably associated with other measures of female reproduction evaluated for the present study. Steer growth, carcass composition, meat quality and residual feed intake and female reproduction could be improved simultaneously if measurements describing both are included in a multi-trait genetic evaluation. Results of the present study also showed that expanding female reproduction traits to include descriptors of first and second mating outcomes, as well as lifetime reproductive performance, would allow a fuller account to be taken of genetic relationships of male traits with female reproduction.
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Cockrum R, Stobart R, Lake S, Cammack K. Phenotypic variation in residual feed intake and performance traits in rams. Small Rumin Res 2013. [DOI: 10.1016/j.smallrumres.2013.05.001] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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14
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Evaluation of Wagyu for residual feed intake: Optimizing feed efficiency, growth, and marbling in Wagyu cattle. ACTA ACUST UNITED AC 2013. [DOI: 10.15232/s1080-7446(15)30195-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Pimentel ECG, König S. Genomic selection for the improvement of meat quality in beef. J Anim Sci 2012; 90:3418-26. [DOI: 10.2527/jas.2011-5005] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- E. C. G. Pimentel
- Department of Animal Breeding, University of Kassel, 37213 Witzenhausen, Germany
| | - S. König
- Department of Animal Breeding, University of Kassel, 37213 Witzenhausen, Germany
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16
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MacNeil MD, Lopez-Villalobos N, Northcutt SL. A prototype national cattle evaluation for feed intake and efficiency of Angus cattle1,2. J Anim Sci 2011; 89:3917-23. [DOI: 10.2527/jas.2011-4124] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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17
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Van Eenennaam AL, van der Werf JHJ, Goddard ME. The value of using DNA markers for beef bull selection in the seedstock sector. J Anim Sci 2011; 89:307-20. [PMID: 21262975 DOI: 10.2527/jas.2010-3223] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The objective of this study was to estimate the value derived from using DNA information to increase the accuracy of beef sire selection in a closed seedstock herd. Breeding objectives for commercial production systems targeting 2 diverse markets were examined using multiple-trait selection indexes developed for the Australian cattle industry. Indexes included those for both maternal (self-replacing) and terminal herds targeting either a domestic market, where steers are finished on pasture, or the export market, where steers are finished on concentrate rations in feedlots and marbling has a large value. Selection index theory was used to predict the response to conventional selection based on phenotypic performance records, and this was compared with including information from 2 hypothetical marker panels. In 1 case the marker panel explained a percentage of additive genetic variance equal to the heritability for all traits in the breeding objective and selection criteria, and in the other case to one-half of this amount. Discounted gene flow methodology was used to calculate the value derived from the use of superior bulls selected using DNA test information and performance recording over that derived from conventional selection using performance recording alone. Results were ultimately calculated as discounted returns per DNA test purchased by the seedstock operator. The DNA testing using these hypothetical marker panels increased the selection response between 29 to 158%. The value of this improvement above that obtained using traditional performance recording ranged from $89 to 565 per commercial bull, and $5,332 to 27,910 per stud bull. Assuming that the entire bull calf crop was tested to achieve these gains, the value of the genetic gain derived from DNA testing ranged from $204 to 1,119 per test. All values assumed that the benefits derived from using superior bulls were efficiently transferred along the production chain to the seedstock producer incurring the costs of genotyping. These results suggest that the development of greater-accuracy DNA tests for beef cattle selection could be beneficial from an industry-wide perspective, but the commercial viability will strongly depend on price signaling throughout the production chain.
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Affiliation(s)
- A L Van Eenennaam
- Department of Animal Science, University of California, Davis, CA 95616, USA.
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18
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Cottle DJ, Nolan JV, Wiedemann SG. Ruminant enteric methane mitigation: a review. ANIMAL PRODUCTION SCIENCE 2011. [DOI: 10.1071/an10163] [Citation(s) in RCA: 180] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
In Australia, agriculture is responsible for ~17% of total greenhouse gas emissions with ruminants being the largest single source. However, agriculture is likely to be shielded from the full impact of any future price on carbon. In this review, strategies for reducing ruminant methane output are considered in relation to rumen ecology and biochemistry, animal breeding and management options at an animal, farm, or national level. Nutritional management strategies have the greatest short-term impact. Methanogenic microorganisms remove H2 produced during fermentation of organic matter in the rumen and hind gut. Cost-effective ways to change the microbial ecology to reduce H2 production, to re-partition H2 into products other than methane, or to promote methanotrophic microbes with the ability to oxidise methane still need to be found. Methods of inhibiting methanogens include: use of antibiotics; promoting viruses/bacteriophages; use of feed additives such as fats and oils, or nitrate salts, or dicarboxylic acids; defaunation; and vaccination against methanogens. Methods of enhancing alternative H2 using microbial species include: inoculating with acetogenic species; feeding highly digestible feed components favouring ‘propionate fermentations’; and modifying rumen conditions. Conditions that sustain acetogen populations in kangaroos and termites, for example, are poorly understood but might be extended to ruminants. Mitigation strategies are not in common use in extensive grazing systems but dietary management or use of growth promotants can reduce methane output per unit of product. New, natural compounds that reduce rumen methane output may yet be found. Smaller but more permanent benefits are possible using genetic approaches. The indirect selection criterion, residual feed intake, when measured on ad libitum grain diets, has limited relevance for grazing cattle. There are few published estimates of genetic parameters for feed intake and methane production. Methane-related single nucleotide polymorphisms have yet to be used commercially. As a breeding objective, the use of methane/kg product rather than methane/head is recommended. Indirect selection via feed intake may be more cost-effective than via direct measurement of methane emissions. Life cycle analyses indicate that intensification is likely to reduce total greenhouse gas output but emissions and sequestration from vegetation and soil need to be addressed. Bio-economic modelling suggests most mitigation options are currently not cost-effective.
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Wulfhorst JD, Ahola JK, Kane SL, Keenan LD, Hill RA. Factors affecting beef cattle producer perspectives on feed efficiency. J Anim Sci 2010; 88:3749-58. [PMID: 20622178 DOI: 10.2527/jas.2010-2907] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
To establish the basis for implementation of a producer education program, a social assessment of the willingness and barriers to adoption of a measure of feed efficiency in beef cattle [residual feed intake (RFI)] was conducted. A 35-question mailed survey was sent to 1,888 producers acquired from the stratified random sample of the Idaho Cattle Association member list (n = 488), Red Angus Association of America member list (n = 2,208), and Red Angus Association of America bull buyer list (n = 5,325). The adjusted response rate for the survey was 49.9%. Of the survey respondents, 58.7% were commercial cow/calf producers and 41.3% were seedstock producers or operated a combination seedstock/commercial operation. Commercial operations had an average of 223 ± 17 cows and 13 ± 3 bulls, whereas seedstock herds (including combination herds) had slightly fewer cows (206 ± 24) and more bulls (23 ± 6). Both commercial and seedstock operators indicated that calving ease/birth weight was the most important trait used to evaluate genetic merit of breeding bulls. Only 3.8 and 4.8% of commercial and seedstock producers indicated that feed efficiency was the most important characteristic used for bull selection. Binary logistic regression models were used to predict willingness of seedstock producers to begin collecting data for the calculation of RFI on their bulls, or to predict willingness of commercial producers to begin selecting bulls based on RFI data. In response, 49.1% of commercial producers and 43.6% of seedstock producers indicated they were willing to adopt RFI as a measure of feed efficiency. These data indicate that feed efficiency was one of the traits that producers consider important; those who perceive feed efficiency as important tended to be actively involved in data collection on their herds, underpinning the notion that objective assessment was valued and used by some. Additional data collection in a future social assessment will continue to elaborate the proportion of producers who perceive feed efficiency as an increasingly important decision and management tool for beef production.
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Affiliation(s)
- J D Wulfhorst
- Social Science Research Unit, University of Idaho, Moscow, 83844, USA
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20
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Effects of genotype and plane of nutrition on growth and carcass characteristics of lambs from hill sheep systems. Animal 2009; 3:1232-45. [PMID: 22444899 DOI: 10.1017/s1751731109004443] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
The objective of this study was to determine the effect of lamb genotype and plane of nutrition on post-weaning lamb growth, and carcass characteristics in hill sheep systems. The lamb genotypes compared were as follows: purebred Scottish Blackface, Swaledale × Scottish Blackface, Cheviot × Scottish Blackface, Lleyn × Scottish Blackface and Texel × Scottish Blackface lambs. During the finishing period, lambs were allocated to a (i) low plane of nutrition (LP), based on a fixed allowance of dried grass pellets representing a grass-based system; (ii) high plane of nutrition (HP-cereal), with a diet consisting proportionately of 0.20 dried grass pellets : 0.80 cereal-based concentrate offered ad libitum; (iii) high plane of nutrition (HP-cereal/oil), with a diet consisting proportionately of 0.20 dried grass pellets : 0.80 cereal-based concentrate containing oilseed rape offered ad libitum. There were significant genotype × diet interactions for dry matter (DM) intake (P < 0.001), live weight gain (P < 0.05) and carcass gain (P < 0.05). On the LP diet, carcass gains were higher for Texel cross compared to Blackface and Swaledale cross lambs (P < 0.05). On both HP diets, carcass gains were lower in Blackface and Swaledale crosses compared with the Cheviot, Lleyn and Texel cross lambs (P < 0.01). Feed conversion efficiency, expressed in terms of carcass gain per unit of DM, was highest for Texel cross and Cheviot cross, lowest in Swaledale cross and Blackface and intermediate for Lleyn cross lambs (P < 0.001). Conformation classification was lowest for Swaledale cross (P < 0.05) and highest for Texel cross lambs (P < 0.001), whilst those of Blackface, Cheviot and Lleyn cross lambs were similar. Carcasses from Blackface and Lleyn cross lambs had higher fat classifications than Texel and Cheviot cross lambs (P < 0.01). Feed conversion efficiency was lowest with the LP diet compared with the HP diets, resulting in a 5-week longer finishing period and lower carcass weights, fat scores, dressing proportions and subcutaneous fat depth measurements. These results indicate that crossbreeding can have a major effect on lamb performance in the hill sheep sector. Feeding a HP increased lamb growth rates, particularly for high growth-potential genotypes, improved feed efficiency, shortened the finishing period but increased carcass fatness. Including oilseed rape in concentrate-based diets did not affect performance.
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21
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Kahi AK, Hirooka H. Effect of direct and indirect selection criteria for efficiency of gain on profitability of Japanese Black cattle selection strategies1. J Anim Sci 2007; 85:2401-12. [PMID: 17565064 DOI: 10.2527/jas.2006-713] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The objective of this study was to determine the effect of use of residual feed intake (RFI) and the blood concentration of IGF-I (IGF) as selection criteria for efficiency of gain on profitability of Japanese Black cattle selection strategies with restricted test capacity. A breeding objective that integrated the cow-calf and feedlot segments was considered. Selection strategies were defined that differed in whether information on IGF and RFI during performance testing (RFIpt) was used to make selection decisions and in the number of animals measured for IGF. In all strategies, sires were selected from the proportion chosen during the first selection stage (performance testing), modeling a 2-stage selection process. The effect on genetic gain and profitability of variations in test capacity, of the genetic correlations of IGF with marbling score (MS) and RFIpt, and nonzero economic values for and, hence, inclusion of RFI of the cow and feedlot animals in the breeding objective was examined. Additional genetic gain and profitability were generated when information on IGF concentration and RFIpt in the performance-tested young bulls was included in the selection criteria. Profit per cow was optimal when measurement of IGF and RFIpt were incorporated together in the selection index. Increasing test capacity resulted in an increase in genetic gain in all strategies, and profit per cow was optimal in all strategies when 900 places were available for performance testing. Profit per cow was more sensitive to changes in the genetic correlation between IGF and MS than between IGF and RFIpt, especially when more animals were measured for IGF, or else the favorable relationship between IGF and MS had no significant effect on profit per cow. Additional genetic gain and profitability were generated in each strategy when RFI of the cow and feedlot animals were included in the breeding objective with nonzero economic values. These results may be used to provide guidance to Japanese Black cattle breeders and, in the absence of more breed-specific information, may also have application in other Japanese beef breeds.
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Affiliation(s)
- A K Kahi
- Animal Breeding and Genetics Group, Department of Animal Sciences, Egerton University, 20115 Egerton, Kenya.
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22
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Efficiency of alternative schemes breeding for resistance to gastrointestinal helminths in meat sheep. Small Rumin Res 2007. [DOI: 10.1016/j.smallrumres.2006.01.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Gicheha MG, Kosgey IS, Bebe BO, Kahi AK. Evaluation of the efficiency of alternative two-tier nucleus breeding systems designed to improve meat sheep in Kenya. J Anim Breed Genet 2007; 123:247-57. [PMID: 16882091 DOI: 10.1111/j.1439-0388.2006.00598.x] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
A deterministic approach was used to genetically and economically evaluate the efficiency of five two-tier nucleus breeding systems for meat sheep in Kenya. The nucleus breeding systems differed in terms of whether the system was closed or open, in the type of animals that were involved in the movement of genetic superiority and in the number of selection pathways in each system. These systems were compared under four alternative breeding objectives based on monetary genetic gain and profit per ewe. The first objective simulated a situation where the flock size cannot be increased due to non-feed related constraints (FLOCK). The second specifically assumed that the flock size is restricted due to limited amount of feed resources (FEED). The third and fourth objectives assumed that sheep performed only tangible roles (TR) and both tangible and intangible roles (IR) in the production system respectively. Monetary genetic gains were highest for all objectives in an open nucleus system with a certain proportion of commercial-born ewes being introduced in the nucleus while at the same time utilizing young rams from the nucleus to breed sires and dams for the nucleus and commercial sector (ONyre). Utilizing young rams in a closed nucleus system for the dissemination of superior genes resulted in higher annual monetary genetic gain than utilization of old rams. Profit per ewe was significantly higher for FLOCK and IR in ONyre. In a closed system that allowed for downward movement of dams from the nucleus to the commercial sector to breed sires and dams, profit per ewe was highest for FEED and TR. The success of a nucleus breeding system should also focus on the profitability and logistics of establishing it. The implication of these results on the choice of two-tier nucleus breeding systems for the improvement of meat sheep is discussed.
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Affiliation(s)
- M G Gicheha
- Animal Breeding and Genetics Group, Department of Animal Sciences, Egerton University, Njoro, Kenya
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24
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Baker SD, Szasz JI, Klein TA, Kuber PS, Hunt CW, Glaze JB, Falk D, Richard R, Miller JC, Battaglia RA, Hill RA. Residual feed intake of purebred Angus steers: Effects on meat quality and palatability. J Anim Sci 2006; 84:938-45. [PMID: 16543572 DOI: 10.2527/2006.844938x] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Relationships between residual feed intake (RFI) and other performance variables were determined using 54 purebred Angus steers. Individual feed intake and BW gain were recorded during a 70-d post-weaning period to calculate RFI. After the 70-d post-weaning test, steers were fed a finishing ration to a similar fat thickness (FT), transported to a commercial facility, and slaughtered. A subsample of carcasses (n = 32) was selected to examine the relationships among RFI, meat quality, and palatability. Steers were categorized into high (> 0.5 SD above the mean; n = 16), medium (mid; +/- 0.5 SD from the mean; n = 21), and low (< 0.5 SD below the mean; n = 17) RFI groups. No differences were detected in ADG, initial BW, and d 71 BW among the high, mid, and low RFI steers. Steers from the high RFI group had a greater DMI (P = 0.004) and feed conversion ratio (FCR; DMI:ADG; P = 0.002) compared with the low RFI steers. Residual feed intake was positively correlated with DMI (r = 0.54; P = 0.003) and FCR (r = 0.42; P = 0.002), but not with initial BW, d 71 BW, d 71 ultrasound FT, initial ultrasound LM area, d 71 ultrasound LM area, or ADG. The FCR was positively correlated with initial BW (r = 0.46; P = 0.0005), d 71 BW (r = 0.34; P = 0.01), and DMI (r = 0.40; P = 0.003) and was negatively correlated with ADG (r = -0.65; P = 0.001). There were no differences among RFI groups for HCW, LM area, FT, KPH, USDA yield grade, marbling score, or quality grade. Reflectance color b* scores of steaks from high RFI steers were greater (P = 0.02) than those from low RFI steers. There was no difference between high and low RFI groups for LM calpastatin activity. Warner-Bratzler shear force and sensory panel tenderness and flavor scores of steaks were similar across RFI groups. Steaks from high RFI steers had lower (P = 0.04) off-flavor scores than those from low RFI steers. Cook loss percentages were greater (P = 0.005) for steaks from low RFI steers than for those from mid RFI steers. These data support current views that RFI is independent of ADG, but is correlated with DMI and FCR. Importantly, the data also support the hypothesis that there is no relationship between RFI and beef quality in purebred Angus steers.
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Affiliation(s)
- S D Baker
- Department of Animal and Veterinary Science, University of Idaho, Moscow, 83844, USA
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A Multiple Trait Selection Index Including Feed Efficiency11AAFC-LRC contribution number 38705050. ACTA ACUST UNITED AC 2006. [DOI: 10.15232/s1080-7446(15)31062-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Wood B, Archer J, van der Werf J. Response to selection in beef cattle using IGF-1 as a selection criterion for residual feed intake under different Australian breeding objectives. ACTA ACUST UNITED AC 2004. [DOI: 10.1016/j.livprodsci.2004.06.009] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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