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Zhang Q, Lu M, Ou R, Lin H, Xuan G, Wang X, Xu X, Zhang W, Wang G. Nanodot-Inspired Precise Bacterial Gene Suppression in a Smart Hydrogel Bandage for Underwater Wound Healing. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2025; 12:e2415169. [PMID: 39950874 PMCID: PMC11967816 DOI: 10.1002/advs.202415169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2024] [Revised: 01/19/2025] [Indexed: 04/05/2025]
Abstract
The complex and dynamic nature of aquatic ecosystems, particularly in marine environments, makes managing wound infections a significant challenge for individuals engaged in underwater activities and for aquatic organisms. Although antibiotics have played a critical role in safeguarding humans and aquatic health, their risk of drug resistance and environmental impact present substantial obstacles to long-term sustainability. Using fin rot disease in turbot (Scophthalmus maximus) caused by infection of Vibrio anguillarum (V. anguillarum) as a model, a new strategy is presented that employs a carbon dot (CD)-based antisense oligonucleotide (ASO) delivery system, combined with an adhesive hydrogel, to achieve targeted gene silencing of V. anguillarum for underwater healing. The CDs that cause enhanced cytoplasmic membrane permeability, efficiently deliver ASOs into V. anguillarum without requiring additional equipment or chemical facilitators. The specific design of the ASO sequence enables targeted silencing of empA, achieving efficiency as high as 71.2%. An adhesive hydrogel is applied to boost the local concentration of ASO/CDs at wound sites in seawater, effectively sealing the infected area and preventing fin rot disease in turbot. This study pioneer targeted bacterial gene regulation using CD-based delivery integrated with a hydrogel bandage, offering practical solutions for managing underwater bacterial diseases.
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Affiliation(s)
- Qingsong Zhang
- MOE Key Laboratory of Evolution & Marine Biodiversity and Institute of Evolution & Marine BiodiversityOcean University of China5 Yushan RoadQingdao266003China
- Laboratory for Marine Drugs and BioproductsQingdao Marine Science and Technology CenterQingdao266237China
- SKL of Marine Food Processing & Safety ControlCollege of Food Science and EngineeringOcean University of China1299 Sansha RoadQingdao266404China
| | - Menghan Lu
- MOE Key Laboratory of Evolution & Marine Biodiversity and Institute of Evolution & Marine BiodiversityOcean University of China5 Yushan RoadQingdao266003China
- Laboratory for Marine Drugs and BioproductsQingdao Marine Science and Technology CenterQingdao266237China
- SKL of Marine Food Processing & Safety ControlCollege of Food Science and EngineeringOcean University of China1299 Sansha RoadQingdao266404China
| | - Richang Ou
- College of Materials Science and EngineeringOcean University of ChinaQingdao266100China
| | - Hong Lin
- SKL of Marine Food Processing & Safety ControlCollege of Food Science and EngineeringOcean University of China1299 Sansha RoadQingdao266404China
| | - Guanhua Xuan
- SKL of Marine Food Processing & Safety ControlCollege of Food Science and EngineeringOcean University of China1299 Sansha RoadQingdao266404China
| | - Xiudan Wang
- SKL of Marine Food Processing & Safety ControlCollege of Food Science and EngineeringOcean University of China1299 Sansha RoadQingdao266404China
| | - Xiaofeng Xu
- College of Materials Science and EngineeringOcean University of ChinaQingdao266100China
| | - Weiwei Zhang
- School of Marine SciencesNingbo University169 Qixingnan RoadNingbo315832China
| | - Guoqing Wang
- MOE Key Laboratory of Evolution & Marine Biodiversity and Institute of Evolution & Marine BiodiversityOcean University of China5 Yushan RoadQingdao266003China
- Laboratory for Marine Drugs and BioproductsQingdao Marine Science and Technology CenterQingdao266237China
- SKL of Marine Food Processing & Safety ControlCollege of Food Science and EngineeringOcean University of China1299 Sansha RoadQingdao266404China
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Kazazić SP, Topić Popović N, Strunjak-Perović I, Babić S, Florio D, Fioravanti M, Bojanić K, Čož-Rakovac R. Matrix-assisted laser desorption/ionization time of flight mass spectrometry identification of Vibrio (Listonella) anguillarum isolated from sea bass and sea bream. PLoS One 2019; 14:e0225343. [PMID: 31738803 PMCID: PMC6860450 DOI: 10.1371/journal.pone.0225343] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2019] [Accepted: 11/01/2019] [Indexed: 11/18/2022] Open
Abstract
Vibrio (Listonella) anguillarum is a pathogenic bacterium causing septicaemia in a wide range of marine organisms and inducing severe mortalities, thus it is crucial to conduct its accurate and rapid identification. The aim of this study was to assess MALDI-TOF MS as a method of choice for identification of clinical V. anguillarum isolates from affected marine fish. Since the method accuracy might be influenced by the type of the medium used, as well as by the incubation conditions, we tested V. anguillarum isolates grown on standard media with and without the addition of NaCl, cultured at three incubation temperatures, and at three incubation periods. The best scores were retrieved for V. anguillarum strains grown on NaCl-supplemented tryptone soy agar (TSA) at 22°C and incubated for 48h (100% identification to species level; overall score 2.232), followed by incubation at 37°C and 48h (100% to species level; score 2.192). The strains grown on non-supplemented TSA gave the best readings when incubated at 22°C for 72h (100% identification to species level; overall score 2.182), followed by incubation at 15°C for 72h (100% to species level; score 2.160). Unreliable identifications and no-identifications were growing with the incubation duration at 37°C, on both media, amounting to 88.89% for 7d incubation on supplemented TSA, and 92.60% for 7d incubation on non-supplemented TSA. The age of the cultured strains and use of media significantly impacted the mass spectra, demonstrating that for reliable identification, MALDI-TOF MS protein fingerprinting with the on-target extraction should be performed on strains grown on a NaCl-supplemented medium at temperatures between 15 and 22°C, incubated for 48–72 hours.
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Affiliation(s)
- Snježana P Kazazić
- Laboratory for Mass Spectrometry and Functional Proteomics, Rudjer Bošković Institute, Zagreb, Croatia
| | - Natalija Topić Popović
- Laboratory for Aquaculture Biotechnology, Rudjer Bošković Institute, Zagreb, Croatia.,Centre of Excellence for Marine Bioprospecting-BioProCro, Rudjer Bošković Institute, Zagreb, Croatia
| | - Ivančica Strunjak-Perović
- Laboratory for Aquaculture Biotechnology, Rudjer Bošković Institute, Zagreb, Croatia.,Centre of Excellence for Marine Bioprospecting-BioProCro, Rudjer Bošković Institute, Zagreb, Croatia
| | - Sanja Babić
- Laboratory for Aquaculture Biotechnology, Rudjer Bošković Institute, Zagreb, Croatia.,Centre of Excellence for Marine Bioprospecting-BioProCro, Rudjer Bošković Institute, Zagreb, Croatia
| | - Daniela Florio
- Department of Veterinary Medical Sciences, Alma Mater Studiorum Università di Bologna, Ozzano Emilia, Italy
| | - Marialetizia Fioravanti
- Department of Veterinary Medical Sciences, Alma Mater Studiorum Università di Bologna, Ozzano Emilia, Italy
| | - Krunoslav Bojanić
- Laboratory for Aquaculture Biotechnology, Rudjer Bošković Institute, Zagreb, Croatia.,Centre of Excellence for Marine Bioprospecting-BioProCro, Rudjer Bošković Institute, Zagreb, Croatia
| | - Rozelindra Čož-Rakovac
- Laboratory for Aquaculture Biotechnology, Rudjer Bošković Institute, Zagreb, Croatia.,Centre of Excellence for Marine Bioprospecting-BioProCro, Rudjer Bošković Institute, Zagreb, Croatia
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Batallones V, Fernandez J, Farthing B, Shoemaker J, Qian KL, Phan K, Fung E, Rivera A, Van K, de la Cruz F, Ferreri AJ, Burinski K, Zhang J, Lizarraga V, Doan K, Rocha K, Traglia G, Ramirez MS, Tolmasky ME. Disruption of hmgA by DNA Duplication is Responsible for Hyperpigmentation in a Vibrio anguillarum Strain. Sci Rep 2019; 9:14589. [PMID: 31601906 PMCID: PMC6787238 DOI: 10.1038/s41598-019-51126-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2019] [Accepted: 09/10/2019] [Indexed: 11/24/2022] Open
Abstract
Vibrio anguillarum 531A, isolated from a diseased fish in the Atlantic Ocean, is a mixture composed of about 95 and 5% of highly pigmented cells (strain 531Ad) and cells with normal levels of pigmentation (strain 531Ac), respectively. Analysis of the V. anguillarum 531Ad DNA region encompassing genes involved in the tyrosine metabolism showed a 410-bp duplication within the hmgA gene that results in a frameshift and early termination of translation of the homogentisate 1,2-dioxygenase. We hypothesized that this mutation results in accumulation of homogentisate that is oxidized and polymerized to produce pyomelanin. Introduction in E. coli of recombinant clones carrying the V. anguillarum hppD (4-hydroxyphenylpyruvate-dioxygenase), and a mutated hmgA produced brown colored colonies. Complementation with a recombinant clone harboring hmgA restored the original color to the colonies confirming that in the absence of homogentisate 1,2-dioxygenase the intermediary in tyrosine catabolism homogentisate accumulates and undergoes nonenzymatic oxidation and polymerization resulting in high amounts of the brown pigment. Whole-genome sequence analysis showed that V. anguillarum 531 Ac and 531Ad differ in the hmgA gene mutation and 23 mutations, most of which locate to intergenic regions and insertion sequences.
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Affiliation(s)
- Veronica Batallones
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Jennifer Fernandez
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Brett Farthing
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Jordan Shoemaker
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Keizen Li Qian
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Kimberly Phan
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Eric Fung
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Ashley Rivera
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Kevin Van
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Francesca de la Cruz
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Alexandra J Ferreri
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Krystle Burinski
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Jackie Zhang
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Vicente Lizarraga
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Kevin Doan
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Kenneth Rocha
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - German Traglia
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Maria S Ramirez
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA
| | - Marcelo E Tolmasky
- Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA, USA.
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