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Ao D, Wang B, Wang Y, Chen Y, Anum R, Feng C, Ji M, Liang C, An S. Grassland degraded patchiness reduces microbial necromass content but increases contribution to soil organic carbon accumulation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 951:175717. [PMID: 39197785 DOI: 10.1016/j.scitotenv.2024.175717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2024] [Revised: 08/20/2024] [Accepted: 08/21/2024] [Indexed: 09/01/2024]
Abstract
Plant and microbially derived carbon (C) are the two major sources of soil organic carbon (SOC), and their ratio impacts SOC composition, accumulation, stability, and turnover. The contributions of and the key factors defining the plant and microbial C in SOC with grassland patches are not well known. Here, we aim to address this issue by analyzing lignin phenols, amino sugars, glomalin-related soil proteins (GRSP), enzyme activities, particulate organic carbon (POC), and mineral-associated organic carbon (MAOC). Shrubby patches showed increased SOC and POC due to higher plant inputs, thereby stimulating plant-derived C (e.g., lignin phenol) accumulation. While degraded and exposed patches exhibited higher microbially derived C due to reduced plant input. After grassland degradation, POC content decreased faster than MAOC, and plant biomarkers (lignin phenols) declined faster than microbial biomarkers (amino sugars). As grassland degradation intensified, microbial necromass C and GRSP (gelling agents) increased their contribution to SOC formation. Grassland degradation stimulated the stabilization of microbially derived C in the form of MAOC. Further analyses revealed that microorganisms have a C and P co-limitation, stimulating the recycling of necromass, resulting in the proportion of microbial necromass C in the SOC remaining essentially stable with grassland degradation. Overall, with the grassland degradation, the relative proportion of the plant component decreases while than of the microbial component increases and existed in the form of MAOC. This is attributed to the physical protection of SOC by GRSP cementation. Therefore, different sources of SOC should be considered in evaluating SOC responses to grassland degradation, which has important implications for predicting dynamics in SOC under climate change and anthropogenic factors.
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Affiliation(s)
- Deng Ao
- College of Nature Resources and Environment, Northwest A&F University, Yangling 712100, China
| | - Baorong Wang
- College of Grassland Agriculture, Northwest A&F University, Yangling 712100, China
| | - Yubin Wang
- College of Nature Resources and Environment, Northwest A&F University, Yangling 712100, China
| | - Yuanjia Chen
- Institute of Soil and Water Conservation, Northwest A&F University, Yangling 712100, China
| | - Rafiq Anum
- Institute of Soil and Water Conservation, Northwest A&F University, Yangling 712100, China
| | - Chenglong Feng
- Institute of Soil and Water Conservation, Northwest A&F University, Yangling 712100, China
| | - Mukan Ji
- Center for Pan-third Pole Environment, Lanzhou University, Lanzhou 730000, China
| | - Chao Liang
- Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, China
| | - Shaoshan An
- College of Nature Resources and Environment, Northwest A&F University, Yangling 712100, China; Institute of Soil and Water Conservation, Northwest A&F University, Yangling 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling 712100, China.
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Knorr MA, Contosta AR, Morrison EW, Muratore TJ, Anthony MA, Stoica I, Geyer KM, Simpson MJ, Frey SD. Unexpected sustained soil carbon flux in response to simultaneous warming and nitrogen enrichment compared with single factors alone. Nat Ecol Evol 2024:10.1038/s41559-024-02546-x. [PMID: 39317790 DOI: 10.1038/s41559-024-02546-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Accepted: 08/23/2024] [Indexed: 09/26/2024]
Abstract
Recent observations document that long-term soil warming in a temperate deciduous forest leads to significant soil carbon loss, whereas chronic soil nitrogen enrichment leads to significant soil carbon gain. Most global change experiments like these are single factor, investigating the impacts of one stressor in isolation of others. Because warming and ecosystem nitrogen enrichment are happening concurrently in many parts of the world, we designed a field experiment to test how these two factors, alone and in combination, impact soil carbon cycling. Here, we show that long-term continuous soil warming or nitrogen enrichment when applied alone followed the predicted response, with warming resulting in significant soil carbon loss and nitrogen fertilization tending towards soil carbon gain. The combination treatment showed an unanticipated response, whereby soil respiratory carbon loss was significantly higher than either single factor alone, but without a concomitant decline in soil carbon storage. Observations suggest that when soils are exposed to both factors simultaneously, plant carbon inputs to the soil are enhanced, counterbalancing soil carbon loss and helping maintain soil carbon stocks near control levels. This has implications for both atmospheric CO2 emissions and soil fertility and shows that coupling two important global change drivers results in a distinctive response that was not predicted by the behaviour of the single factors in isolation.
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Affiliation(s)
- Melissa A Knorr
- Center for Soil Biogeochemistry and Microbial Ecology, University of New Hampshire, Durham, NH, USA.
- Department of Natural Resources and the Environment, University of New Hampshire, Durham, NH, USA.
| | - A R Contosta
- Department of Natural Resources and the Environment, University of New Hampshire, Durham, NH, USA
- Earth Systems Research Center, Institute for the Study of Earth, Oceans, and Space, University of New Hampshire, Durham, NH, USA
| | - E W Morrison
- Department of Natural Resources and the Environment, University of New Hampshire, Durham, NH, USA
| | - T J Muratore
- Center for Soil Biogeochemistry and Microbial Ecology, University of New Hampshire, Durham, NH, USA
- Department of Natural Resources and the Environment, University of New Hampshire, Durham, NH, USA
| | - M A Anthony
- Center for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria
| | - I Stoica
- Department of Physical and Environmental Sciences and Environmental NMR Centre, University of Toronto Scarborough, Toronto, Ontario, Canada
| | - K M Geyer
- Department of Environmental Science and Sustainability, Allegheny College, Meadville, PA, USA
| | - M J Simpson
- Department of Physical and Environmental Sciences and Environmental NMR Centre, University of Toronto Scarborough, Toronto, Ontario, Canada
| | - S D Frey
- Center for Soil Biogeochemistry and Microbial Ecology, University of New Hampshire, Durham, NH, USA.
- Department of Natural Resources and the Environment, University of New Hampshire, Durham, NH, USA.
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3
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Li MY, Wang W, Mo F, Ren AT, Wang ZY, Zhu Y, Xiong YC. Seven-year long-term inoculation with Funneliformis mosseae increases maize yield and soil carbon storage evidenced by in situ 13C-labeling in a dryland. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 944:173975. [PMID: 38876345 DOI: 10.1016/j.scitotenv.2024.173975] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 05/25/2024] [Accepted: 06/11/2024] [Indexed: 06/16/2024]
Abstract
Arbuscular mycorrhizal fungi (AMF) establish symbiotic relationships with roots of most plants, contributing to plant water uptake and soil carbon (C) sequestration. However, the interactive contribution and of long-term field AMF inoculation and water conservation on maize yield and soil organic carbon (SOC) sequestration in drylands remain largely unknown. After 7-year long-term field inoculation with AMF Funneliformis mosseae, AMF suppression by fungicide benomyl, and no-AMF/no-benomyl control, and two water conservation practices of half-film and full-film mulching (∼50 % and ∼100 crop planted area covered with plastic film), this study thus applied in situ 13CO2-C labeling and high-throughput sequencing to quantify newly photosynthetically assimilated C into different soil C pools including soil aggregates and respiration, and their effects on maize growth and productivity. Results showed that 7-year long-term AMF inoculation significantly increased the relative abundance of F. mosseae in rhizosphere soil and root AMF colonization, indicating that F. mosseae successfully dominated in AMF communities. Compared to no-AMF/no-benomyl control, AMF colonization significantly increased shoot biomass and maize yield by 17.9 % and 20.3 % while mitigated the less water conservation effects of half-film mulching on maize performance. The SOC content under field AMF inoculation SOC was increased from 7.9 to 8.4 g kg-1 and also the mean weight diameter of aggregates (1.21 to 1.35), e.g. aggregate stability. After 1 and/or 40 days 13C labeling, the enhanced 13C translocations into macro-aggregates with decreased 13C emissions from microbial decomposition under field AMF inoculation had contributed to SOC conservation in bulk soil. These results suggest that AMF inoculation in dryland crops is promising to increase crop yield while promoting more atmospheric CO2 fixation in soil aggregates. A long-term field AMF inoculation will enhance our understanding of applying beneficial mycorrhizal fungi to enhance soil C sequestration and also crop yield via plant-fixed atmospheric CO2 in semi-arid and arid farmlands.
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Affiliation(s)
- Meng-Ying Li
- Key Laboratory of Microbial Resources Exploitation and Application of Gansu Province, Institute of Biology, Gansu Academy of Sciences, Lanzhou 730000, China; State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou 730000, China
| | - Wei Wang
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou 730000, China
| | - Fei Mo
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Ai-Tian Ren
- College of Horticulture and Gardening, Yangtze University, Jingzhou 434025, Hubei, China
| | - Zhi-Ye Wang
- Key Laboratory of Microbial Resources Exploitation and Application of Gansu Province, Institute of Biology, Gansu Academy of Sciences, Lanzhou 730000, China
| | - Ying Zhu
- Key Laboratory of Microbial Resources Exploitation and Application of Gansu Province, Institute of Biology, Gansu Academy of Sciences, Lanzhou 730000, China.
| | - You-Cai Xiong
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou 730000, China.
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4
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Liang JL, Feng SW, Jia P, Lu JL, Yi X, Gao SM, Wu ZH, Liao B, Shu WS, Li JT. Unraveling the habitat preferences, ecological drivers, potential hosts, and auxiliary metabolism of soil giant viruses across China. MICROBIOME 2024; 12:136. [PMID: 39039586 PMCID: PMC11265010 DOI: 10.1186/s40168-024-01851-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 05/30/2024] [Indexed: 07/24/2024]
Abstract
BACKGROUND Soil giant viruses are increasingly believed to have profound effects on ecological functioning by infecting diverse eukaryotes. However, their biogeography and ecology remain poorly understood. RESULTS In this study, we analyzed 333 soil metagenomes from 5 habitat types (farmland, forest, grassland, Gobi desert, and mine wasteland) across China and identified 533 distinct giant virus phylotypes affiliated with nine families, thereby greatly expanding the diversity of soil giant viruses. Among the nine families, Pithoviridae were the most diverse. The majority of phylotypes exhibited a heterogeneous distribution among habitat types, with a remarkably high proportion of unique phylotypes in mine wasteland. The abundances of phylotypes were negatively correlated with their environmental ranges. A total of 76 phylotypes recovered in this study were detectable in a published global topsoil metagenome dataset. Among climatic, geographical, edaphic, and biotic characteristics, soil eukaryotes were identified as the most important driver of beta-diversity of giant viral communities across habitat types. Moreover, co-occurrence network analysis revealed some pairings between giant viral phylotypes and eukaryotes (protozoa, fungi, and algae). Analysis of 44 medium- to high-quality giant virus genomes recovered from our metagenomes uncovered not only their highly shared functions but also their novel auxiliary metabolic genes related to carbon, sulfur, and phosphorus cycling. CONCLUSIONS These findings extend our knowledge of diversity, habitat preferences, ecological drivers, potential hosts, and auxiliary metabolism of soil giant viruses. Video Abstract.
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Affiliation(s)
- Jie-Liang Liang
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, People's Republic of China
| | - Shi-Wei Feng
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, People's Republic of China
| | - Pu Jia
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, People's Republic of China
| | - Jing-Li Lu
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, People's Republic of China
| | - Xinzhu Yi
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, People's Republic of China
| | - Shao-Ming Gao
- School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China
| | - Zhuo-Hui Wu
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, People's Republic of China
| | - Bin Liao
- School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China
| | - Wen-Sheng Shu
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, People's Republic of China
| | - Jin-Tian Li
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, People's Republic of China.
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5
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Polussa A, Ward EB, Bradford MA, Oliverio AM. A common ericoid shrub modulates the diversity and structure of fungal communities across an arbuscular to ectomycorrhizal tree dominance gradient. FEMS Microbiol Ecol 2024; 100:fiae092. [PMID: 38925654 PMCID: PMC11250453 DOI: 10.1093/femsec/fiae092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Revised: 05/06/2024] [Accepted: 06/24/2024] [Indexed: 06/28/2024] Open
Abstract
Differences between arbuscular (AM) and ectomycorrhizal (EcM) trees strongly influence forest ecosystem processes, in part through their impact on saprotrophic fungal communities. Ericoid mycorrhizal (ErM) shrubs likely also impact saprotrophic communities given that they can shape nutrient cycling by slowing decomposition rates and intensifying nitrogen limitation. We investigated the depth distributions of saprotrophic and EcM fungal communities in paired subplots with and without a common understory ErM shrub, mountain laurel (Kalmia latifolia L.), across an AM to EcM tree dominance gradient in a temperate forest by analyzing soils from the organic, upper mineral (0-10 cm), and lower mineral (cumulative depth of 30 cm) horizons. The presence of K. latifolia was strongly associated with the taxonomic and functional composition of saprotrophic and EcM communities. Saprotrophic richness was consistently lower in the Oa horizon when this ErM shrub species was present. However, in AM tree-dominated plots, the presence of the ErM shrub was associated with a higher relative abundance of saprotrophs. Given that EcM trees suppress both the diversity and relative abundance of saprotrophic communities, our results suggest that separate consideration of ErM shrubs and EcM trees may be necessary when assessing the impacts of plant mycorrhizal associations on belowground communities.
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Affiliation(s)
- Alexander Polussa
- The Forest School, Yale School of the Environment, Yale University, New Haven, CT 06511, United States
| | - Elisabeth B Ward
- The Forest School, Yale School of the Environment, Yale University, New Haven, CT 06511, United States
- Department of Environmental Science and Forestry, The CT Agricultural Experiment Station, New Haven, CT 06511, United States
- The NY Botanical Garden, The Bronx, NY 10458, United States
| | - Mark A Bradford
- The Forest School, Yale School of the Environment, Yale University, New Haven, CT 06511, United States
| | - Angela M Oliverio
- Department of Biology, Syracuse University, 107 College Place, Syracuse, NY 13210, United States
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6
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Tang B, Man J, Lehmann A, Rillig MC. Arbuscular mycorrhizal fungi attenuate negative impact of drought on soil functions. GLOBAL CHANGE BIOLOGY 2024; 30:e17409. [PMID: 38978455 DOI: 10.1111/gcb.17409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 06/17/2024] [Accepted: 06/19/2024] [Indexed: 07/10/2024]
Abstract
Although positive effects of arbuscular mycorrhizal (AM) fungi on plant performance under drought have been well documented, how AM fungi regulate soil functions and multifunctionality requires further investigation. In this study, we first performed a meta-analysis to test the potential role of AM fungi in maintaining soil functions under drought. Then, we conducted a greenhouse experiment, using a pair of hyphal ingrowth cores to spatially separate the growth of AM fungal hyphae and plant roots, to further investigate the effects of AM fungi on soil multifunctionality and its resistance against drought. Our meta-analysis showed that AM fungi promote multiple soil functions, including soil aggregation, microbial biomass and activities of soil enzymes related to nutrient cycling. The greenhouse experiment further demonstrated that AM fungi attenuate the negative impact of drought on these soil functions and thus multifunctionality, therefore, increasing their resistance against drought. Moreover, this buffering effect of AM fungi persists across different frequencies of water supply and plant species. These findings highlight the unique role of AM fungi in maintaining multiple soil functions by mitigating the negative impact of drought. Our study highlights the importance of AM fungi as a nature-based solution to sustaining multiple soil functions in a world where drought events are intensifying.
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Affiliation(s)
- Bo Tang
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Jing Man
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Anika Lehmann
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Matthias C Rillig
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
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7
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Tang B, Man J, Romero F, Bergmann J, Lehmann A, Rillig MC. Mycorrhization enhances plant growth and stabilizes biomass allocation under drought. GLOBAL CHANGE BIOLOGY 2024; 30:e17438. [PMID: 39054882 DOI: 10.1111/gcb.17438] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 06/21/2024] [Accepted: 07/03/2024] [Indexed: 07/27/2024]
Abstract
Plants and their symbionts, such as arbuscular mycorrhizal (AM) fungi, are increasingly subjected to various environmental stressors due to climate change, including drought. As a response to drought, plants generally allocate more biomass to roots over shoots, thereby facilitating water uptake. However, whether this biomass allocation shift is modulated by AM fungi remains unknown. Based on 5691 paired observations from 154 plant species, we conducted a meta-analysis to evaluate how AM fungi modulate the responses of plant growth and biomass allocation (e.g., root-to-shoot ratio, R/S) to drought. We found that AM fungi attenuate the negative impact of drought on plant growth, including biomass production, photosynthetic performance and resource (e.g. nutrient and water) uptake. Accordingly, drought significantly increased R/S in non-inoculated plants, but not in plants symbiotic with established AM fungal symbioses. These results suggest that AM fungi promote plant growth and stabilize their R/S through facilitating nutrient and water uptake in plants under drought. Our findings highlight the crucial role of AM fungi in enhancing plant resilience to drought by optimizing resource allocation. This knowledge opens avenues for sustainable agricultural practices that leverage symbiotic relationships for climate adaptation.
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Affiliation(s)
- Bo Tang
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Jing Man
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Ferran Romero
- Plant-Soil Interactions Group, Agroscope, Zurich, Switzerland
| | - Joana Bergmann
- Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, Germany
| | - Anika Lehmann
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Matthias C Rillig
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
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8
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Zheng J, Freschet GT, Tedersoo L, Li S, Yan H, Jiang L, Wang H, Ma N, Dai X, Fu X, Kou L. A trait-based root acquisition-defence-decomposition framework in angiosperm tree species. Nat Commun 2024; 15:5311. [PMID: 38906891 PMCID: PMC11192760 DOI: 10.1038/s41467-024-49666-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Accepted: 06/15/2024] [Indexed: 06/23/2024] Open
Abstract
To adapt to the complex belowground environment, plants make trade-offs between root resource acquisition and defence ability. This includes forming partnerships with different types of root associating microorganisms, such as arbuscular mycorrhizal and ectomycorrhizal fungi. These trade-offs, by mediating root chemistry, exert legacy effects on nutrient release during decomposition, which may, in turn, affect the ability of new roots to re-acquire resources, thereby generating a feedback loop. However, the linkages at the basis of this potential feedback loop remain largely unquantified. Here, we propose a trait-based root 'acquisition-defence-decomposition' conceptual framework and test the strength of relevant linkages across 90 angiosperm tree species. We show that, at the plant species level, the root-fungal symbiosis gradient within the root economics space, root chemical defence (condensed tannins), and root decomposition rate are closely linked, providing support to this framework. Beyond the dichotomy between arbuscular mycorrhizal-dominated versus ectomycorrhizal-dominated systems, we suggest a continuous shift in feedback loops, from 'high arbuscular mycorrhizal symbiosis-low defence-fast decomposition-inorganic nutrition' by evolutionarily ancient taxa to 'high ectomycorrhizal symbiosis-high defence-slow decomposition-organic nutrition' by more modern taxa. This 'acquisition-defence-decomposition' framework provides a foundation for testable hypotheses on multidimensional linkages between species' belowground strategies and ecosystem nutrient cycling in an evolutionary context.
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Affiliation(s)
- Jiajia Zheng
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
- Qianyanzhou Ecological Research Station, Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | | | - Leho Tedersoo
- Mycology and Microbiology Center, University of Tartu, Tartu, Estonia
- Department of Zoology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Shenggong Li
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Han Yan
- Freie Universität Berlin, Institut für Biologie, 14195, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, 14195, Berlin, Germany
| | - Lei Jiang
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, China
| | - Huimin Wang
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
- Qianyanzhou Ecological Research Station, Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Ning Ma
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xiaoqin Dai
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
- Qianyanzhou Ecological Research Station, Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
| | - Xiaoli Fu
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
- Qianyanzhou Ecological Research Station, Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Liang Kou
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China.
- Qianyanzhou Ecological Research Station, Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China.
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China.
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9
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Berrios L, Bogar GD, Bogar LM, Venturini AM, Willing CE, Del Rio A, Ansell TB, Zemaitis K, Velickovic M, Velickovic D, Pellitier PT, Yeam J, Hutchinson C, Bloodsworth K, Lipton MS, Peay KG. Ectomycorrhizal fungi alter soil food webs and the functional potential of bacterial communities. mSystems 2024; 9:e0036924. [PMID: 38717159 PMCID: PMC11237468 DOI: 10.1128/msystems.00369-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Accepted: 04/11/2024] [Indexed: 06/19/2024] Open
Abstract
Most of Earth's trees rely on critical soil nutrients that ectomycorrhizal fungi (EcMF) liberate and provide, and all of Earth's land plants associate with bacteria that help them survive in nature. Yet, our understanding of how the presence of EcMF modifies soil bacterial communities, soil food webs, and root chemistry requires direct experimental evidence to comprehend the effects that EcMF may generate in the belowground plant microbiome. To this end, we grew Pinus muricata plants in soils that were either inoculated with EcMF and native forest bacterial communities or only native bacterial communities. We then profiled the soil bacterial communities, applied metabolomics and lipidomics, and linked omics data sets to understand how the presence of EcMF modifies belowground biogeochemistry, bacterial community structure, and their functional potential. We found that the presence of EcMF (i) enriches soil bacteria linked to enhanced plant growth in nature, (ii) alters the quantity and composition of lipid and non-lipid soil metabolites, and (iii) modifies plant root chemistry toward pathogen suppression, enzymatic conservation, and reactive oxygen species scavenging. Using this multi-omic approach, we therefore show that this widespread fungal symbiosis may be a common factor for structuring soil food webs.IMPORTANCEUnderstanding how soil microbes interact with one another and their host plant will help us combat the negative effects that climate change has on terrestrial ecosystems. Unfortunately, we lack a clear understanding of how the presence of ectomycorrhizal fungi (EcMF)-one of the most dominant soil microbial groups on Earth-shapes belowground organic resources and the composition of bacterial communities. To address this knowledge gap, we profiled lipid and non-lipid metabolites in soils and plant roots, characterized soil bacterial communities, and compared soils amended either with or without EcMF. Our results show that the presence of EcMF changes soil organic resource availability, impacts the proliferation of different bacterial communities (in terms of both type and potential function), and primes plant root chemistry for pathogen suppression and energy conservation. Our findings therefore provide much-needed insight into how two of the most dominant soil microbial groups interact with one another and with their host plant.
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Affiliation(s)
- Louis Berrios
- Department of Biology, Stanford University, Stanford, California, USA
| | - Glade D. Bogar
- Kellogg Biological Station, Michigan State University, Hickory Corners, Michigan, USA
| | - Laura M. Bogar
- Department of Plant Biology, University of California, Davis, Davis, California, USA
| | | | - Claire E. Willing
- Department of Biology, Stanford University, Stanford, California, USA
- School of Environmental and Forest Sciences, University of Washington, Seattle, Washington, USA
| | - Anastacia Del Rio
- Department of Biology, Stanford University, Stanford, California, USA
| | - T. Bertie Ansell
- Department of Biology, Stanford University, Stanford, California, USA
- Division of CryoEM and Bioimaging, SSRL, SLAC National Accelerator Laboratory, Menlo Park, California, USA
| | - Kevin Zemaitis
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Marija Velickovic
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Dusan Velickovic
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | | | - Jay Yeam
- Department of Biology, Stanford University, Stanford, California, USA
| | - Chelsea Hutchinson
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Kent Bloodsworth
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Mary S. Lipton
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Kabir G. Peay
- Department of Biology, Stanford University, Stanford, California, USA
- Department of Earth System Science, Stanford University, Stanford, California, USA
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10
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Angst G, Potapov A, Joly FX, Angst Š, Frouz J, Ganault P, Eisenhauer N. Conceptualizing soil fauna effects on labile and stabilized soil organic matter. Nat Commun 2024; 15:5005. [PMID: 38886372 PMCID: PMC11183196 DOI: 10.1038/s41467-024-49240-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Accepted: 05/28/2024] [Indexed: 06/20/2024] Open
Abstract
Fauna is highly abundant and diverse in soils worldwide, but surprisingly little is known about how it affects soil organic matter stabilization. Here, we review how the ecological strategies of a multitude of soil faunal taxa can affect the formation and persistence of labile (particulate organic matter, POM) and stabilized soil organic matter (mineral-associated organic matter, MAOM). We propose three major mechanisms - transformation, translocation, and grazing on microorganisms - by which soil fauna alters factors deemed essential in the formation of POM and MAOM, including the quantity and decomposability of organic matter, soil mineralogy, and the abundance, location, and composition of the microbial community. Determining the relevance of these mechanisms to POM and MAOM formation in cross-disciplinary studies that cover individual taxa and more complex faunal communities, and employ physical fractionation, isotopic, and microbiological approaches is essential to advance concepts, models, and policies focused on soil organic matter and effectively manage soils as carbon sinks, nutrient stores, and providers of food.
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Affiliation(s)
- Gerrit Angst
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103, Leipzig, Germany.
- Institute of Biology, Leipzig University, Leipzig, Germany.
- Biology Centre of the Czech Academy of Sciences, Institute of Soil Biology & Biogeochemistry, Na Sádkách 7, 37005, České Budějovice, Czech Republic.
- Institute for Environmental Studies, Charles University, Benátská 2, Praha 2, Prague, Czech Republic.
| | - Anton Potapov
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103, Leipzig, Germany
- Senckenberg Museum für Naturkunde Görlitz, Postfach 300 154, 02806, Görlitz, Germany
| | - François-Xavier Joly
- Eco&Sols, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France
| | - Šárka Angst
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103, Leipzig, Germany
- Institute of Biology, Leipzig University, Leipzig, Germany
| | - Jan Frouz
- Biology Centre of the Czech Academy of Sciences, Institute of Soil Biology & Biogeochemistry, Na Sádkách 7, 37005, České Budějovice, Czech Republic
- Institute for Environmental Studies, Charles University, Benátská 2, Praha 2, Prague, Czech Republic
| | - Pierre Ganault
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103, Leipzig, Germany
- Institute of Biology, Leipzig University, Leipzig, Germany
- Laboratoire ECODIV USC INRAE 1499, Université de Rouen Normandie, FR CNRS 3730 SCALE, Rouen, France
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103, Leipzig, Germany
- Institute of Biology, Leipzig University, Leipzig, Germany
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11
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Choreño-Parra EM, Treseder KK. Mycorrhizal fungi modify decomposition: a meta-analysis. THE NEW PHYTOLOGIST 2024; 242:2763-2774. [PMID: 38605488 DOI: 10.1111/nph.19748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2024] [Accepted: 03/22/2024] [Indexed: 04/13/2024]
Abstract
It has been proposed that ectomycorrhizal fungi can reduce decomposition while arbuscular mycorrhizal fungi may enhance it. These phenomena are known as the 'Gadgil effect' and 'priming effect', respectively. However, it is unclear which one predominates globally. We evaluated whether mycorrhizal fungi decrease or increase decomposition, and identified conditions that mediate this effect. We obtained decomposition data from 43 studies (97 trials) conducted in field or laboratory settings that controlled the access of mycorrhizal fungi to substrates colonized by saprotrophs. Across studies, mycorrhizal fungi promoted decomposition of different substrates by 6.7% overall by favoring the priming effect over the Gadgil effect. However, we observed significant variation among studies. The substrate C : N ratio and absolute latitude influenced the effect of mycorrhizal fungi on decomposition and contributed to the variation. Specifically, mycorrhizal fungi increased decomposition at low substrate C : N and absolute latitude, but there was no discernable effect at high values. Unexpectedly, the effect of mycorrhizal fungi was not influenced by the mycorrhizal type. Our findings challenge previous assumptions about the universality of the Gadgil effect but highlight the potential of mycorrhizal fungi to negatively influence soil carbon storage by promoting the priming effect.
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Affiliation(s)
- Eduardo M Choreño-Parra
- Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, CA, 92697, USA
| | - Kathleen K Treseder
- Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, CA, 92697, USA
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12
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Michaud TJ, Pearse IS, Kauserud H, Andrew CJ, Kennedy PG. Mast seeding in European beech (Fagus sylvatica L.) is associated with reduced fungal sporocarp production and community diversity. Ecol Lett 2024; 27:e14460. [PMID: 38877759 DOI: 10.1111/ele.14460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 05/21/2024] [Accepted: 05/23/2024] [Indexed: 06/16/2024]
Abstract
Mast seeding is a well-documented phenomenon across diverse forest ecosystems. While its effect on aboveground food webs has been thoroughly studied, how it impacts the soil fungi that drive soil carbon and nutrient cycling has not yet been explored. To evaluate the relationship between mast seeding and fungal resource availability, we paired a Swiss 29-year fungal sporocarp census with contemporaneous seed production for European beech (Fagus sylvatica L.). On average, mast seeding was associated with a 55% reduction in sporocarp production and a compositional community shift towards drought-tolerant taxa across both ectomycorrhizal and saprotrophic guilds. Among ectomycorrhizal fungi, traits associated with carbon cost did not explain species' sensitivity to seed production. Together, our results support a novel hypothesis that mast seeding limits annual resource availability and reproductive investment in soil fungi, creating an ecosystem 'rhythm' to forest processes that is synchronized above- and belowground.
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Affiliation(s)
- Talia J Michaud
- Department of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA
| | - Ian S Pearse
- U.S. Geological Survey, Fort Collins Science Center, Fort Collins, Colorado, USA
| | | | | | - Peter G Kennedy
- Department of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA
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13
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Pérez‐Pazos E, Beidler KV, Narayanan A, Beatty BH, Maillard F, Bancos A, Heckman KA, Kennedy PG. Fungi rather than bacteria drive early mass loss from fungal necromass regardless of particle size. ENVIRONMENTAL MICROBIOLOGY REPORTS 2024; 16:e13280. [PMID: 38922748 PMCID: PMC11194057 DOI: 10.1111/1758-2229.13280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Accepted: 04/30/2024] [Indexed: 06/28/2024]
Abstract
Microbial necromass is increasingly recognized as an important fast-cycling component of the long-term carbon present in soils. To better understand how fungi and bacteria individually contribute to the decomposition of fungal necromass, three particle sizes (>500, 250-500, and <250 μm) of Hyaloscypha bicolor necromass were incubated in laboratory microcosms inoculated with individual strains of two fungi and two bacteria. Decomposition was assessed after 15 and 28 days via necromass loss, microbial respiration, and changes in necromass pH, water content, and chemistry. To examine how fungal-bacterial interactions impact microbial growth on necromass, single and paired cultures of bacteria and fungi were grown in microplates containing necromass-infused media. Microbial growth was measured after 5 days through quantitative PCR. Regardless of particle size, necromass colonized by fungi had higher mass loss and respiration than both bacteria and uninoculated controls. Fungal colonization increased necromass pH, water content, and altered chemistry, while necromass colonized by bacteria remained mostly unaltered. Bacteria grew significantly more when co-cultured with a fungus, while fungal growth was not significantly affected by bacteria. Collectively, our results suggest that fungi act as key early decomposers of fungal necromass and that bacteria may require the presence of fungi to actively participate in necromass decomposition.
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Affiliation(s)
- Eduardo Pérez‐Pazos
- Ecology, Evolution, and Behavior Graduate ProgramUniversity of MinnesotaSt. PaulMinnesotaUSA
- Department of Plant and Microbial BiologyUniversity of MinnesotaSt. PaulMinnesotaUSA
| | - Katilyn V. Beidler
- Department of Plant and Microbial BiologyUniversity of MinnesotaSt. PaulMinnesotaUSA
| | - Achala Narayanan
- Department of Plant and Microbial BiologyUniversity of MinnesotaSt. PaulMinnesotaUSA
| | - Briana H. Beatty
- Department of Plant and Microbial BiologyUniversity of MinnesotaSt. PaulMinnesotaUSA
| | - François Maillard
- Microbial Ecology Group, Department of BiologyLund UniversityLundSweden
| | - Alexandra Bancos
- Department of Plant and Microbial BiologyUniversity of MinnesotaSt. PaulMinnesotaUSA
| | | | - Peter G. Kennedy
- Department of Plant and Microbial BiologyUniversity of MinnesotaSt. PaulMinnesotaUSA
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14
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Zheng J, Liang S, He R, Luo L, Li Y, Yin C, Pei X, Zhao C. Effects of warming on soil organic carbon pools mediated by mycorrhizae and hyphae on the Eastern Tibetan Plateau, China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 926:172121. [PMID: 38565345 DOI: 10.1016/j.scitotenv.2024.172121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 02/28/2024] [Accepted: 03/29/2024] [Indexed: 04/04/2024]
Abstract
Mycorrhizae and their hyphae play critical roles in soil organic carbon (SOC) accumulation. However, their individual contributions to SOC components and stability under climate warming conditions remain unclear. This study investigated the effects of warming on the SOC pools of Picea asperata (an ectomycorrhizal plant) and Fargesia nitida (an arbuscular mycorrhizal plant) mycorrhizae/hyphae on the eastern Tibetan Plateau. The results indicated that mycorrhizae made greater contributions to SOC accumulation than hyphae did by increasing labile organic carbon (LOC) components, such as particle organic carbon (POC), easily oxidizable organic carbon, and microbial biomass carbon, especially under warming conditions. Plant species also had different effects on SOC composition, resulting in higher mineral-associated organic carbon (MAOC) contents in F. nitida plots than in P. asperata plots; consequently, the former favored SOC stability more than the latter, with a lower POC/MAOC. Partial least-squares path modelling further indicated that mycorrhizae/hyphae indirectly affected LOC pools, mainly by changing soil pH and enzyme activities. Warming had no significant effect on SOC content but did change SOC composition by reducing LOC through affecting soil pH and iron oxides and ultimately increasing SOC stability in the presence of mycorrhizae for both plants. Therefore, the mycorrhizae of both plants are major contributors to the variation of SOC components and stability under warming conditions.
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Affiliation(s)
- Jin Zheng
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, College of Ecology and Environment, Chengdu University of Technology, Chengdu 610059, China; Sichuan Metallurgical Geological Survey and Design Group Co., Ltd, Chengdu 610000, China
| | - Shuang Liang
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, College of Ecology and Environment, Chengdu University of Technology, Chengdu 610059, China
| | - Rongyu He
- China National Environmental Protection Group, Beijing 100082, China
| | - Lin Luo
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Yunyi Li
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, College of Ecology and Environment, Chengdu University of Technology, Chengdu 610059, China
| | - Chunying Yin
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Xiangjun Pei
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, College of Ecology and Environment, Chengdu University of Technology, Chengdu 610059, China.
| | - Chunzhang Zhao
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, College of Ecology and Environment, Chengdu University of Technology, Chengdu 610059, China.
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15
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Gundale MJ, Axelsson EP, Buness V, Callebaut T, DeLuca TH, Hupperts SF, Ibáñez TS, Metcalfe DB, Nilsson MC, Peichl M, Spitzer CM, Stangl ZR, Strengbom J, Sundqvist MK, Wardle DA, Lindahl BD. The biological controls of soil carbon accumulation following wildfire and harvest in boreal forests: A review. GLOBAL CHANGE BIOLOGY 2024; 30:e17276. [PMID: 38683126 DOI: 10.1111/gcb.17276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 03/29/2024] [Accepted: 03/30/2024] [Indexed: 05/01/2024]
Abstract
Boreal forests are frequently subjected to disturbances, including wildfire and clear-cutting. While these disturbances can cause soil carbon (C) losses, the long-term accumulation dynamics of soil C stocks during subsequent stand development is controlled by biological processes related to the balance of net primary production (NPP) and outputs via heterotrophic respiration and leaching, many of which remain poorly understood. We review the biological processes suggested to influence soil C accumulation in boreal forests. Our review indicates that median C accumulation rates following wildfire and clear-cutting are similar (0.15 and 0.20 Mg ha-1 year-1, respectively), however, variation between studies is extremely high. Further, while many individual studies show linear increases in soil C stocks through time after disturbance, there are indications that C stock recovery is fastest early to mid-succession (e.g. 15-80 years) and then slows as forests mature (e.g. >100 years). We indicate that the rapid build-up of soil C in younger stands appears not only driven by higher plant production, but also by a high rate of mycorrhizal hyphal production, and mycorrhizal suppression of saprotrophs. As stands mature, the balance between reductions in plant and mycorrhizal production, increasing plant litter recalcitrance, and ectomycorrhizal decomposers and saprotrophs have been highlighted as key controls on soil C accumulation rates. While some of these controls appear well understood (e.g. temporal patterns in NPP, changes in aboveground litter quality), many others remain research frontiers. Notably, very little data exists describing and comparing successional patterns of root production, mycorrhizal functional traits, mycorrhizal-saprotroph interactions, or C outputs via heterotrophic respiration and dissolved organic C following different disturbances. We argue that these less frequently described controls require attention, as they will be key not only for understanding ecosystem C balances, but also for representing these dynamics more accurately in soil organic C and Earth system models.
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Affiliation(s)
- Michael J Gundale
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - E Petter Axelsson
- Department of Wildlife, Fish and Environmental Studies, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Vincent Buness
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Timon Callebaut
- Department of Environmental Science and Ecology, Umeå University, Umeå, Sweden
| | - Thomas H DeLuca
- College of Forestry, Oregon State University, Corvallis, Oregon, USA
| | - Stefan F Hupperts
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Theresa S Ibáñez
- Department of Wildlife, Fish and Environmental Studies, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Daniel B Metcalfe
- Department of Environmental Science and Ecology, Umeå University, Umeå, Sweden
| | - Marie-Charlotte Nilsson
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Matthias Peichl
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Clydecia M Spitzer
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Zsofia R Stangl
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Joachim Strengbom
- Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Maja K Sundqvist
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - David A Wardle
- Department of Environmental Science and Ecology, Umeå University, Umeå, Sweden
| | - Björn D Lindahl
- Department of Soil Science, Swedish University of Agricultural Sciences, Uppsala, Sweden
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16
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Duchesneau K, Defrenne CE, Petro C, Malhotra A, Moore JAM, Childs J, Hanson PJ, Iversen CM, Kostka JE. Responses of vascular plant fine roots and associated microbial communities to whole-ecosystem warming and elevated CO 2 in northern peatlands. THE NEW PHYTOLOGIST 2024; 242:1333-1347. [PMID: 38515239 DOI: 10.1111/nph.19690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 02/16/2024] [Indexed: 03/23/2024]
Abstract
Warming and elevated CO2 (eCO2) are expected to facilitate vascular plant encroachment in peatlands. The rhizosphere, where microbial activity is fueled by root turnover and exudates, plays a crucial role in biogeochemical cycling, and will likely at least partially dictate the response of the belowground carbon cycle to climate changes. We leveraged the Spruce and Peatland Responses Under Changing Environments (SPRUCE) experiment, to explore the effects of a whole-ecosystem warming gradient (+0°C to 9°C) and eCO2 on vascular plant fine roots and their associated microbes. We combined trait-based approaches with the profiling of fungal and prokaryote communities in plant roots and rhizospheres, through amplicon sequencing. Warming promoted self-reliance for resource uptake in trees and shrubs, while saprophytic fungi and putative chemoorganoheterotrophic bacteria utilizing plant-derived carbon substrates were favored in the root zone. Conversely, eCO2 promoted associations between trees and ectomycorrhizal fungi. Trees mostly associated with short-distance exploration-type fungi that preferentially use labile soil N. Additionally, eCO2 decreased the relative abundance of saprotrophs in tree roots. Our results indicate that plant fine-root trait variation is a crucial mechanism through which vascular plants in peatlands respond to climate change via their influence on microbial communities that regulate biogeochemical cycles.
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Affiliation(s)
- Katherine Duchesneau
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
- Center for Microbial Dynamics and Infection, Georgia Institute of Technology, Atlanta, GA, 30332, USA
| | - Camille E Defrenne
- College of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI, 49931, USA
| | - Caitlin Petro
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
- Center for Microbial Dynamics and Infection, Georgia Institute of Technology, Atlanta, GA, 30332, USA
| | - Avni Malhotra
- Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Jessica A M Moore
- Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Joanne Childs
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA
| | - Paul J Hanson
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA
- Climate Change Science Institute and Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Colleen M Iversen
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA
- Climate Change Science Institute and Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Joel E Kostka
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
- Center for Microbial Dynamics and Infection, Georgia Institute of Technology, Atlanta, GA, 30332, USA
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
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17
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Michaud TJ, Cline LC, Hobbie EA, Gutknecht JLM, Kennedy PG. Herbarium specimens reveal that mycorrhizal type does not mediate declining temperate tree nitrogen status over a century of environmental change. THE NEW PHYTOLOGIST 2024; 242:1717-1724. [PMID: 38073143 DOI: 10.1111/nph.19452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 10/27/2023] [Indexed: 04/26/2024]
Abstract
Rising atmospheric carbon dioxide concentrations (CO2) and atmospheric nitrogen (N) deposition have contrasting effects on ectomycorrhizal (EM) and arbuscular mycorrhizal (AM) symbioses, potentially mediating forest responses to environmental change. In this study, we evaluated the cumulative effects of historical environmental change on N concentrations and δ15N values in AM plants, EM plants, EM fungi, and saprotrophic fungi using herbarium specimens collected in Minnesota, USA from 1871 to 2016. To better understand mycorrhizal mediation of foliar δ15N, we also analyzed a subset of previously published foliar δ15N values from across the United States to parse the effects of N deposition and CO2 rise. Over the last century in Minnesota, N concentrations declined among all groups except saprotrophic fungi. δ15N also declined among all groups of plants and fungi; however, foliar δ15N declined less in EM plants than in AM plants. In the analysis of previously published foliar δ15N values, this slope difference between EM and AM plants was better explained by nitrogen deposition than by CO2 rise. Mycorrhizal type did not explain trajectories of plant N concentrations. Instead, plants and EM fungi exhibited similar declines in N concentrations, consistent with declining forest N status despite moderate levels of N deposition.
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Affiliation(s)
- Talia J Michaud
- Department of Plant and Microbial Biology, University of Minnesota, St Paul, MN, 55108, USA
| | | | - Erik A Hobbie
- Earth Systems Research Center, University of New Hampshire, Durham, NH, 03824, USA
| | - Jessica L M Gutknecht
- Department of Soil, Water, and Climate, University of Minnesota, St Paul, MN, 55108, USA
| | - Peter G Kennedy
- Department of Plant and Microbial Biology, University of Minnesota, St Paul, MN, 55108, USA
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18
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Kakouridis A, Yuan M, Nuccio EE, Hagen JA, Fossum CA, Moore ML, Estera-Molina KY, Nico PS, Weber PK, Pett-Ridge J, Firestone MK. Arbuscular mycorrhiza convey significant plant carbon to a diverse hyphosphere microbial food web and mineral-associated organic matter. THE NEW PHYTOLOGIST 2024; 242:1661-1675. [PMID: 38358052 DOI: 10.1111/nph.19560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Accepted: 12/04/2023] [Indexed: 02/16/2024]
Abstract
Arbuscular mycorrhizal fungi (AMF) transport substantial plant carbon (C) that serves as a substrate for soil organisms, a precursor of soil organic matter (SOM), and a driver of soil microbial dynamics. Using two-chamber microcosms where an air gap isolated AMF from roots, we 13CO2-labeled Avena barbata for 6 wk and measured the C Rhizophagus intraradices transferred to SOM and hyphosphere microorganisms. NanoSIMS imaging revealed hyphae and roots had similar 13C enrichment. SOM density fractionation, 13C NMR, and IRMS showed AMF transferred 0.77 mg C g-1 of soil (increasing total C by 2% relative to non-mycorrhizal controls); 33% was found in occluded or mineral-associated pools. In the AMF hyphosphere, there was no overall change in community diversity but 36 bacterial ASVs significantly changed in relative abundance. With stable isotope probing (SIP)-enabled shotgun sequencing, we found taxa from the Solibacterales, Sphingobacteriales, Myxococcales, and Nitrososphaerales (ammonium oxidizing archaea) were highly enriched in AMF-imported 13C (> 20 atom%). Mapping sequences from 13C-SIP metagenomes to total ASVs showed at least 92 bacteria and archaea were significantly 13C-enriched. Our results illustrate the quantitative and ecological impact of hyphal C transport on the formation of potentially protective SOM pools and microbial roles in the AMF hyphosphere soil food web.
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Affiliation(s)
- Anne Kakouridis
- University of California Berkeley, Berkeley, CA, 94720, USA
- Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Mengting Yuan
- University of California Berkeley, Berkeley, CA, 94720, USA
| | - Erin E Nuccio
- Lawrence Livermore National Laboratory, Livermore, 94550, CA, USA
| | - John A Hagen
- University of California Berkeley, Berkeley, CA, 94720, USA
| | | | - Madeline L Moore
- University of California Berkeley, Berkeley, CA, 94720, USA
- Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Katerina Y Estera-Molina
- University of California Berkeley, Berkeley, CA, 94720, USA
- Lawrence Livermore National Laboratory, Livermore, 94550, CA, USA
| | - Peter S Nico
- Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Peter K Weber
- Lawrence Livermore National Laboratory, Livermore, 94550, CA, USA
| | - Jennifer Pett-Ridge
- Lawrence Livermore National Laboratory, Livermore, 94550, CA, USA
- University of California Merced, Merced, 95343, CA, USA
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19
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Wu S, Fu W, Rillig MC, Chen B, Zhu YG, Huang L. Soil organic matter dynamics mediated by arbuscular mycorrhizal fungi - an updated conceptual framework. THE NEW PHYTOLOGIST 2024; 242:1417-1425. [PMID: 37529867 DOI: 10.1111/nph.19178] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Accepted: 07/13/2023] [Indexed: 08/03/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi play an important role in soil organic matter (SOM) formation and stabilization. Previous studies have emphasized organic compounds produced by AM fungi as persistent binding agents for aggregate formation and SOM storage. This concept overlooks the multiple biogeochemical processes mediated by AM fungal activities, which drive SOM generation, reprocessing, reorganization, and stabilization. Here, we propose an updated conceptual framework to facilitate a mechanistic understanding of the role of AM fungi in SOM dynamics. In this framework, four pathways for AM fungi-mediated SOM dynamics are included: 'Generating', AM fungal exudates and biomass serve as key sources of SOM chemodiversity; 'Reprocessing', hyphosphere microorganisms drive SOM decomposition and resynthesis; 'Reorganizing', AM fungi mediate soil physical changes and influence SOM transport, redistribution, transformation, and storage; and 'Stabilizing', AM fungi drive mineral weathering and organo-mineral interactions for SOM stabilization. Moreover, we discuss the AM fungal role in SOM dynamics at different scales, especially when translating results from small scales to complex larger scales. We believe that working with this conceptual framework can allow a better understanding of AM fungal role in SOM dynamics, therefore facilitating the development of mycorrhiza-based technologies toward soil health and global change mitigation.
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Affiliation(s)
- Songlin Wu
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- Centre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of Queensland, Brisbane, Qld, 4072, Australia
| | - Wei Fu
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Matthias C Rillig
- Institute of Biology, Freie Universität Berlin, Berlin, 14195, Germany
| | - Baodong Chen
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yong-Guan Zhu
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Longbin Huang
- Centre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of Queensland, Brisbane, Qld, 4072, Australia
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20
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Auer L, Buée M, Fauchery L, Lombard V, Barry KW, Clum A, Copeland A, Daum C, Foster B, LaButti K, Singan V, Yoshinaga Y, Martineau C, Alfaro M, Castillo FJ, Imbert JB, Ramírez L, Castanera R, Pisabarro AG, Finlay R, Lindahl B, Olson A, Séguin A, Kohler A, Henrissat B, Grigoriev IV, Martin FM. Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems. THE NEW PHYTOLOGIST 2024; 242:1676-1690. [PMID: 38148573 DOI: 10.1111/nph.19471] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Accepted: 11/23/2023] [Indexed: 12/28/2023]
Abstract
Soil fungi belonging to different functional guilds, such as saprotrophs, pathogens, and mycorrhizal symbionts, play key roles in forest ecosystems. To date, no study has compared the actual gene expression of these guilds in different forest soils. We used metatranscriptomics to study the competition for organic resources by these fungal groups in boreal, temperate, and Mediterranean forest soils. Using a dedicated mRNA annotation pipeline combined with the JGI MycoCosm database, we compared the transcripts of these three fungal guilds, targeting enzymes involved in C- and N mobilization from plant and microbial cell walls. Genes encoding enzymes involved in the degradation of plant cell walls were expressed at a higher level in saprotrophic fungi than in ectomycorrhizal and pathogenic fungi. However, ectomycorrhizal and saprotrophic fungi showed similarly high expression levels of genes encoding enzymes involved in fungal cell wall degradation. Transcripts for N-related transporters were more highly expressed in ectomycorrhizal fungi than in other groups. We showed that ectomycorrhizal and saprotrophic fungi compete for N in soil organic matter, suggesting that their interactions could decelerate C cycling. Metatranscriptomics provides a unique tool to test controversial ecological hypotheses and to better understand the underlying ecological processes involved in soil functioning and carbon stabilization.
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Affiliation(s)
- Lucas Auer
- Université de Lorraine, INRAE, UMR Interactions Arbres-Microorganismes, Nancy, F-54000, France
| | - Marc Buée
- Université de Lorraine, INRAE, UMR Interactions Arbres-Microorganismes, Nancy, F-54000, France
| | - Laure Fauchery
- Université de Lorraine, INRAE, UMR Interactions Arbres-Microorganismes, Nancy, F-54000, France
| | - Vincent Lombard
- Architecture et Fonction des Macromolécules Biologiques, CNRS and Aix-Marseille Université, Marseille, 13288, France
- INRAE, USC1408 Architecture et Fonction des Macromolécules Biologiques, Marseille, 13009, France
| | - Kerry W Barry
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Alicia Clum
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Alex Copeland
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Chris Daum
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Brian Foster
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Kurt LaButti
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Vasanth Singan
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Yuko Yoshinaga
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Christine Martineau
- Laurentian Forestry Centre, Natural Resources Canada, Canadian Forest Service, Quebec, G1V4C7, QC, Canada
| | - Manuel Alfaro
- Institute for Multidisciplinary Research in Applied Biology (IMAB), Public University of Navarra (UPNA), Pamplona, 31006, Spain
| | - Federico J Castillo
- Institute for Multidisciplinary Research in Applied Biology (IMAB), Public University of Navarra (UPNA), Pamplona, 31006, Spain
| | - J Bosco Imbert
- Institute for Multidisciplinary Research in Applied Biology (IMAB), Public University of Navarra (UPNA), Pamplona, 31006, Spain
| | - Lucia Ramírez
- Institute for Multidisciplinary Research in Applied Biology (IMAB), Public University of Navarra (UPNA), Pamplona, 31006, Spain
| | - Raúl Castanera
- Institute for Multidisciplinary Research in Applied Biology (IMAB), Public University of Navarra (UPNA), Pamplona, 31006, Spain
| | - Antonio G Pisabarro
- Institute for Multidisciplinary Research in Applied Biology (IMAB), Public University of Navarra (UPNA), Pamplona, 31006, Spain
| | - Roger Finlay
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Uppsala, 75007, Sweden
| | - Björn Lindahl
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Uppsala, 75007, Sweden
| | - Ake Olson
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Uppsala, 75007, Sweden
| | - Armand Séguin
- Laurentian Forestry Centre, Natural Resources Canada, Canadian Forest Service, Quebec, G1V4C7, QC, Canada
| | - Annegret Kohler
- Université de Lorraine, INRAE, UMR Interactions Arbres-Microorganismes, Nancy, F-54000, France
| | - Bernard Henrissat
- DTU Bioengineering, Denmarks Tekniske Universitet, Copenhagen, 2800, Denmark
- Department of Biological Sciences, King Abdulaziz University, Jeddah, 21589, Saudi Arabia
| | - Igor V Grigoriev
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
- Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, 94720, USA
| | - Francis M Martin
- Université de Lorraine, INRAE, UMR Interactions Arbres-Microorganismes, Nancy, F-54000, France
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21
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Li L, Tian J, Huang K, Xue X, Chen J, Guan F, Zhang T, Sun Y, He C, Zeng X, Su S. Metal-Binding Protein TaGlo1 Improves Fungal Resistance to Arsenite (As III) and Methylarsenite (MAs III) in Paddy Soil. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:7469-7479. [PMID: 38557082 DOI: 10.1021/acs.est.3c11043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
Trivalent arsenicals such as arsenite (AsIII) and methylarsenite (MAsIII) are thought to be ubiquitous in flooded paddy soils and have higher toxicity than pentavalent forms. Fungi are widely prevalent in the rice rhizosphere, and the latter is considered a hotspot for As uptake. However, few studies have focused on alleviating As toxicity in paddy soils using fungi. In this study, we investigated the mechanism by which the protein TaGlo1, derived from the As-resistant fungal strain Trichoderma asperellum SM-12F1, mitigates AsIII and MAsIII toxicity in paddy soils. Taglo1 gene expression in Escherichia coli BL21 conferred strong resistance to AsIII and MAsIII, while purified TaGlo1 showed a high affinity for AsIII and MAsIII. Three cysteine residues (Cys13, Cys18, and Cys71) play crucial roles in binding with AsIII, while only two (Cys13 and Cys18) play crucial roles for MAsIII binding. TaGlo1 had a stronger binding strength for MAsIII than AsIII. Importantly, up to 90.2% of the homologous TaGlo1 proteins originate from fungi by GenBank searching. In the rhizospheres of 14 Chinese paddy soils, Taglo1 was widely distributed and its gene abundance increased with porewater As. This study highlights the potential of fungi to mitigate As toxicity and availability in the soil-rice continuum and suggests future microbial strategies for bioremediation.
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Affiliation(s)
- Lijuan Li
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences/Key Laboratory of Agricultural Environment, MARA, Beijing 100081, P. R. China
| | - Jian Tian
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, P. R. China
| | - Ke Huang
- Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Ximei Xue
- Institute of Urban Environment, Key Laboratory of Urban Environment and Health, Chinese Academy of Sciences, Xiamen 361021, P. R. China
| | - Jian Chen
- Department of Cellular Biology and Pharmacology, Herbert Wertheim College of Medicine, Florida International University, Miami, Florida 33199, United States
| | - Feifei Guan
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, P. R. China
| | - Tuo Zhang
- School of Environmental and Life Science, Nanning Normal University, Nanning 530100, P. R. China
| | - Yifei Sun
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences/Key Laboratory of Agricultural Environment, MARA, Beijing 100081, P. R. China
| | - Chao He
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences/Key Laboratory of Agricultural Environment, MARA, Beijing 100081, P. R. China
| | - Xibai Zeng
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences/Key Laboratory of Agricultural Environment, MARA, Beijing 100081, P. R. China
| | - Shiming Su
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences/Key Laboratory of Agricultural Environment, MARA, Beijing 100081, P. R. China
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22
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Jabinski S, d. M. Rangel W, Kopáček M, Jílková V, Jansa J, Meador TB. Constraining activity and growth substrate of fungal decomposers via assimilation patterns of inorganic carbon and water into lipid biomarkers. Appl Environ Microbiol 2024; 90:e0206523. [PMID: 38527003 PMCID: PMC11022577 DOI: 10.1128/aem.02065-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Accepted: 02/22/2024] [Indexed: 03/27/2024] Open
Abstract
Fungi are among the few organisms on the planet that can metabolize recalcitrant carbon (C) but are also known to access recently produced plant photosynthate. Therefore, improved quantification of growth and substrate utilization by different fungal ecotypes will help to define the rates and controls of fungal production, the cycling of soil organic matter, and thus the C storage and CO2 buffering capacity in soil ecosystems. This pure-culture study of fungal isolates combined a dual stable isotope probing (SIP) approach, together with rapid analysis by tandem pyrolysis-gas chromatography-isotope ratio mass spectrometry to determine the patterns of water-derived hydrogen (H) and inorganic C assimilated into lipid biomarkers of heterotrophic fungi as a function of C substrate. The water H assimilation factor (αW) and the inorganic C assimilation into C18:2 fatty acid isolated from five fungal species growing on glucose was lower (0.62% ± 0.01% and 4.7% ± 1.6%, respectively) than for species grown on glutamic acid (0.90% ± 0.02% and 7.4% ± 3.7%, respectively). Furthermore, the assimilation ratio (RIC/αW) for growth on glucose and glutamic acid can distinguish between these two metabolic modes. This dual-SIP assay thus delivers estimates of fungal activity and may help to delineate the predominant substrates that are respired among a matrix of compounds found in natural environments.IMPORTANCEFungal decomposers play important roles in food webs and nutrient cycling because they can feed on both labile and more recalcitrant forms of carbon. This study developed and applied a dual stable isotope assay (13C-dissolved inorganic carbon/2H) to improve the investigation of fungal activity in the environment. By determining the incorporation patterns of hydrogen and carbon into fungal lipids, this assay delivers estimates of fungal activity and the different metabolic pathways that they employ in ecological and environmental systems.
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Affiliation(s)
- Stanislav Jabinski
- Department of Ecosystem Biology, Faculty of Science, University of South Bohemia, České Budějovice, Czechia
- Institute of Soil Biology and Biochemistry, Biology Centre CAS, České Budějovice, Czechia
| | - Wesley d. M. Rangel
- Institute of Soil Biology and Biochemistry, Biology Centre CAS, České Budějovice, Czechia
| | - Marek Kopáček
- Department of Ecosystem Biology, Faculty of Science, University of South Bohemia, České Budějovice, Czechia
- Institute of Hydrobiology, Biology Centre CAS, České Budějovice, Czechia
| | - Veronika Jílková
- Institute of Soil Biology and Biochemistry, Biology Centre CAS, České Budějovice, Czechia
| | - Jan Jansa
- Institute of Microbiology CAS, Praha, Czechia
| | - Travis B. Meador
- Department of Ecosystem Biology, Faculty of Science, University of South Bohemia, České Budějovice, Czechia
- Institute of Soil Biology and Biochemistry, Biology Centre CAS, České Budějovice, Czechia
- Institute of Hydrobiology, Biology Centre CAS, České Budějovice, Czechia
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23
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Maitra P, Hrynkiewicz K, Szuba A, Jagodziński AM, Al-Rashid J, Mandal D, Mucha J. Metabolic niches in the rhizosphere microbiome: dependence on soil horizons, root traits and climate variables in forest ecosystems. FRONTIERS IN PLANT SCIENCE 2024; 15:1344205. [PMID: 38645395 PMCID: PMC11026606 DOI: 10.3389/fpls.2024.1344205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/25/2023] [Accepted: 03/18/2024] [Indexed: 04/23/2024]
Abstract
Understanding belowground plant-microbial interactions is important for biodiversity maintenance, community assembly and ecosystem functioning of forest ecosystems. Consequently, a large number of studies were conducted on root and microbial interactions, especially in the context of precipitation and temperature gradients under global climate change scenarios. Forests ecosystems have high biodiversity of plants and associated microbes, and contribute to major primary productivity of terrestrial ecosystems. However, the impact of root metabolites/exudates and root traits on soil microbial functional groups along these climate gradients is poorly described in these forest ecosystems. The plant root system exhibits differentiated exudation profiles and considerable trait plasticity in terms of root morphological/phenotypic traits, which can cause shifts in microbial abundance and diversity. The root metabolites composed of primary and secondary metabolites and volatile organic compounds that have diverse roles in appealing to and preventing distinct microbial strains, thus benefit plant fitness and growth, and tolerance to abiotic stresses such as drought. Climatic factors significantly alter the quantity and quality of metabolites that forest trees secrete into the soil. Thus, the heterogeneities in the rhizosphere due to different climate drivers generate ecological niches for various microbial assemblages to foster beneficial rhizospheric interactions in the forest ecosystems. However, the root exudations and microbial diversity in forest trees vary across different soil layers due to alterations in root system architecture, soil moisture, temperature, and nutrient stoichiometry. Changes in root system architecture or traits, e.g. root tissue density (RTD), specific root length (SRL), and specific root area (SRA), impact the root exudation profile and amount released into the soil and thus influence the abundance and diversity of different functional guilds of microbes. Here, we review the current knowledge about root morphological and functional (root exudation) trait changes that affect microbial interactions along drought and temperature gradients. This review aims to clarify how forest trees adapt to challenging environments by leveraging their root traits to interact beneficially with microbes. Understanding these strategies is vital for comprehending plant adaptation under global climate change, with significant implications for future research in plant biodiversity conservation, particularly within forest ecosystems.
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Affiliation(s)
- Pulak Maitra
- Institute of Dendrology, Polish Academy of Sciences, Kórnik, Poland
| | - Katarzyna Hrynkiewicz
- Department of Microbiology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University, Toruń, Poland
| | - Agnieszka Szuba
- Institute of Dendrology, Polish Academy of Sciences, Kórnik, Poland
| | - Andrzej M. Jagodziński
- Institute of Dendrology, Polish Academy of Sciences, Kórnik, Poland
- Department of Game Management and Forest Protection, Faculty of Forestry and Wood Technology, Poznań University of Life Sciences, Poznań, Poland
| | - Jubair Al-Rashid
- Tianjin Institute of Industrial Biotechnology, University of Chinese Academy of Sciences, Tianjin, China
| | - Dipa Mandal
- Institute of Microbiology, University of Chinese Academy of Sciences, Beijing, China
| | - Joanna Mucha
- Institute of Dendrology, Polish Academy of Sciences, Kórnik, Poland
- Department of Forest Entomology and Pathology, Faculty of Forestry and Wood Technology, Poznań University of Life Sciences, Poznań, Poland
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24
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Edwards JD, Krichels AH, Seyfried GS, Dalling J, Kent AD, Yang WH. Soil microbial community response to ectomycorrhizal dominance in diverse neotropical montane forests. MYCORRHIZA 2024; 34:95-105. [PMID: 38183463 PMCID: PMC10998807 DOI: 10.1007/s00572-023-01134-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Accepted: 12/19/2023] [Indexed: 01/08/2024]
Abstract
Ectomycorrhizal (EM) associations can promote the dominance of tree species in otherwise diverse tropical forests. These EM associations between trees and their fungal mutualists have important consequences for soil organic matter cycling, yet the influence of these EM-associated effects on surrounding microbial communities is not well known, particularly in neotropical forests. We examined fungal and prokaryotic community composition in surface soil samples from mixed arbuscular mycorrhizal (AM) and ectomycorrhizal (EM) stands as well as stands dominated by EM-associated Oreomunnea mexicana (Juglandaceae) in four watersheds differing in soil fertility in the Fortuna Forest Reserve, Panama. We hypothesized that EM-dominated stands would support distinct microbial community assemblages relative to the mixed AM-EM stands due to differences in carbon and nitrogen cycling associated with the dominance of EM trees. We expected that this microbiome selection in EM-dominated stands would lead to lower overall microbial community diversity and turnover, with tighter correspondence between general fungal and prokaryotic communities. We measured fungal and prokaryotic community composition via high-throughput Illumina sequencing of the ITS2 (fungi) and 16S rRNA (prokaryotic) gene regions. We analyzed differences in alpha and beta diversity between forest stands associated with different mycorrhizal types, as well as the relative abundance of fungal functional groups and various microbial taxa. We found that fungal and prokaryotic community composition differed based on stand mycorrhizal type. There was lower prokaryotic diversity and lower relative abundance of fungal saprotrophs and pathogens in EM-dominated than AM-EM mixed stands. However, contrary to our prediction, there was lower homogeneity for fungal communities in EM-dominated stands compared to mixed AM-EM stands. Overall, we demonstrate that EM-dominated tropical forest stands have distinct soil microbiomes relative to surrounding diverse forests, suggesting that EM fungi may filter microbial functional groups in ways that could potentially influence plant performance or ecosystem function.
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Affiliation(s)
- Joseph D Edwards
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN, USA.
| | - Alexander H Krichels
- USDA Forest Service, Rocky Mountain Research Station, Albuquerque, NM, 87102, USA
| | - Georgia S Seyfried
- Department of Forest Ecology and Resource Management, Oregon State University, Corvallis, OR, 97331, USA
| | - James Dalling
- Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Angela D Kent
- Department of Natural Resources and Environmental Science, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Wendy H Yang
- Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
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25
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Li X, Li Q, Duan Y, Sun H, Chu H, Jia S, Chen H, Tang W. Soil fungal communities varied across aspects of restored grassland in former mining areas of the Qinghai-Tibet Plateau. PLoS One 2024; 19:e0295019. [PMID: 38530822 DOI: 10.1371/journal.pone.0295019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Accepted: 11/14/2023] [Indexed: 03/28/2024] Open
Abstract
To determine whether different aspects lead to a heterogeneous distribution of soil fungi, we investigated artificially established alpine grasslands in the Muli mining area in the Qinghai-Tibet Plateau. Employing high-throughput sequencing techniques, we analyzed the composition, diversity, and function of soil fungal communities across various aspects (flat, East-facing, South-facing, West-facing, North-facing). We also examined their relationships with environmental factors. Soil fungal communities of restored alpine grasslands differed significantly across aspects in terms of the dominant phyla, classes and species level. Compared with No aspect, the Shannon index of fungi respectively decreased by 2.99%, 19.32%, 19.37% and 10.56% for East aspect, South aspect, West aspect and North aspect, respectively, and the Chao1 index of fungi respectively decreased by-2.44%, 35.50%, 42.15% and 3.21%, respectively. A total of 22 different types of fungi were identified in the study area. Predictive analysis, based on PICRUSt2, indicated that the primary functions of the fungal communities across different aspects were aerobic respiration I (cytochrome c) and aerobic respiration II (cytochrome c). Among the environmental variables, total phosphorus (P) and total nitrogen (N) were the principal factors influencing the fungal community composition.In conclusion, aspect plays a significant role in shaping the composition of fungal communities and also affects their overall diversity.
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Affiliation(s)
- Xiaoqing Li
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, China
| | - Qiang Li
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, China
| | - Yinzhu Duan
- Qinghai Province Grassland Improvement Experiment Station, Xining, China
| | - Haiqun Sun
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, China
| | - Hui Chu
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, China
| | - Shunbin Jia
- Qinghai Province Grassland Technology and Extension Station, Xining, China
| | - Hongjie Chen
- Tongyu County Animal Quarantine Station, Baicheng, China
| | - Wenxi Tang
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, China
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26
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Trovato VW, Souza GGD, Santos SC, Carvalho LGVD, Medeiros ESD, Biazatti RM, Santos CC, Torales EP, Carvalho RL, Santos VC. Arbuscular mycorrhizal fungi, phosphorus and organic residues in Peltophorum dubium (Spreng.) Taub. seedlings. BRAZ J BIOL 2024; 84:e276160. [PMID: 38511773 DOI: 10.1590/1519-6984.276160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2023] [Accepted: 02/06/2024] [Indexed: 03/22/2024] Open
Abstract
Studies have underscored a growingdemand for innovative practices in the cultivation of seedlings from forest species, with a notable emphasis on the utilization of organic waste, inoculation with arbuscular mycorrhizal fungi (AMF), and phosphate fertilization. This study aimed to evaluate the impact of organic residues, inoculation with AMF, and phosphorus on the growth and quality of Peltophorum dubium (Spreng.) Taub. seedlings. Two independent experiments were conducted. In Experiment I, treatments included inoculation with various AMF species: control (without inoculation), Clareoideoglomus etunicatum, Rhizophagus heterosporum, Rhizophagus clarum, and MIX (a combination of the three AMF species), all in conjunction with varying doses of phosphorus (0, 60, 120, 180, and 240 mg kg-1 soil). In Experiment II, treatments comprised a control group (without AMF) and inoculation with Glomus clarum, Gigaspora margarita, Gigaspora albida, Clareoideoglomus etunicatum, and MIX (a combination of the four AMF species), each associated with four substrates: S1) soil + coarse sand - SCS, S2) SCS + poultry manure, S3) SCS + cattle manure, and S4) SCS + sheep manure. Peltophorum dubium seedlings exhibited heightened growth with the inoculation of R. heterosporum, R. clarum, and MIX. Positive responses were observed in seedlings when exposed to organic residues, particularly sheep manure, resulting in increased biomass production and enhanced Dickson quality index. The AMF inoculation, specifically with R. heterosporum, R. clarum, and MIX, provided optimal growth conditions for P. dubium seedlings. Remarkably, the utilization of organic residues, notably substrates with chicken manure and cattle manure, exerted substantial positive effects on both growth and quality of P. dubium seedlings.
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Affiliation(s)
- V W Trovato
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - G G de Souza
- Universidade do Estado de Santa Catarina - UDESC, Departamento de Ciência do Solo, Lages, SC, Brasil
| | - S C Santos
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - L G V de Carvalho
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - E S de Medeiros
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - R M Biazatti
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - C C Santos
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - E P Torales
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - R L Carvalho
- Universidade Federal da Grande Dourados - UFGD, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - V C Santos
- Instituto Federal de Educação, Ciência e Tecnologia Bahiano, Santa Inês, BA, Brasil
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Anthony MA, Tedersoo L, De Vos B, Croisé L, Meesenburg H, Wagner M, Andreae H, Jacob F, Lech P, Kowalska A, Greve M, Popova G, Frey B, Gessler A, Schaub M, Ferretti M, Waldner P, Calatayud V, Canullo R, Papitto G, Marinšek A, Ingerslev M, Vesterdal L, Rautio P, Meissner H, Timmermann V, Dettwiler M, Eickenscheidt N, Schmitz A, Van Tiel N, Crowther TW, Averill C. Fungal community composition predicts forest carbon storage at a continental scale. Nat Commun 2024; 15:2385. [PMID: 38493170 PMCID: PMC10944544 DOI: 10.1038/s41467-024-46792-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Accepted: 03/11/2024] [Indexed: 03/18/2024] Open
Abstract
Forest soils harbor hyper-diverse microbial communities which fundamentally regulate carbon and nutrient cycling across the globe. Directly testing hypotheses on how microbiome diversity is linked to forest carbon storage has been difficult, due to a lack of paired data on microbiome diversity and in situ observations of forest carbon accumulation and storage. Here, we investigated the relationship between soil microbiomes and forest carbon across 238 forest inventory plots spanning 15 European countries. We show that the composition and diversity of fungal, but not bacterial, species is tightly coupled to both forest biotic conditions and a seven-fold variation in tree growth rates and biomass carbon stocks when controlling for the effects of dominant tree type, climate, and other environmental factors. This linkage is particularly strong for symbiotic endophytic and ectomycorrhizal fungi known to directly facilitate tree growth. Since tree growth rates in this system are closely and positively correlated with belowground soil carbon stocks, we conclude that fungal composition is a strong predictor of overall forest carbon storage across the European continent.
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Affiliation(s)
- Mark A Anthony
- Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland.
- Swiss Federal Institute for Forests, Snow, and the Landscape Research (WSL), Birmensdorf, Switzerland.
- Center for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria.
| | - Leho Tedersoo
- Mycology and Microbiology Center, University of Tartu, Tartu, Estonia
| | - Bruno De Vos
- Environment & Climate Unit, Research Institute for Nature and Forest, Geraardsbergen, Belgium
| | - Luc Croisé
- French National Forest Office, Fontainebleau, France
| | | | - Markus Wagner
- Northwest German Forest Research Institute, Göttingen, Germany
| | | | - Frank Jacob
- Sachsenforst State Forest, Pirna OT Graupa, Germany
| | - Paweł Lech
- Forest Research Institute, Sękocin Stary, Poland
| | | | - Martin Greve
- Research Institute for Forest Ecology and Forestry, Trippstadt, Germany
| | - Genoveva Popova
- Executive Environmental Agency at the Ministry of Environment and Water, Sofia, Bulgaria
| | - Beat Frey
- Swiss Federal Institute for Forests, Snow, and the Landscape Research (WSL), Birmensdorf, Switzerland
| | - Arthur Gessler
- Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland
- Swiss Federal Institute for Forests, Snow, and the Landscape Research (WSL), Birmensdorf, Switzerland
| | - Marcus Schaub
- Swiss Federal Institute for Forests, Snow, and the Landscape Research (WSL), Birmensdorf, Switzerland
| | - Marco Ferretti
- Swiss Federal Institute for Forests, Snow, and the Landscape Research (WSL), Birmensdorf, Switzerland
| | - Peter Waldner
- Swiss Federal Institute for Forests, Snow, and the Landscape Research (WSL), Birmensdorf, Switzerland
| | | | - Roberto Canullo
- Department of Plant Diversity and Ecosystem Management, University of Camerino, Camerino, Italy
| | - Giancarlo Papitto
- Arma dei Carabinieri Forestry Environmental and Agri-food protection Units, Rome, Italy
| | | | - Morten Ingerslev
- Department of Geosciences and Natural Resource Management, University of Copenhagen, Frederiksberg C, Denmark
| | - Lars Vesterdal
- Department of Geosciences and Natural Resource Management, University of Copenhagen, Frederiksberg C, Denmark
| | - Pasi Rautio
- Natural Resources Institute Finland, Rovaniemi, Finland
| | - Helge Meissner
- Division of Forest and Forest Resources, Norwegian Institute of Bioeconomy Research, Ås, Norway
| | - Volkmar Timmermann
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research, Ås, Norway
| | - Mike Dettwiler
- Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland
| | - Nadine Eickenscheidt
- State Agency for Nature, Environment and Consumer Protection of North Rhine-Westphalia, Recklinghausen, Germany
| | - Andreas Schmitz
- State Agency for Nature, Environment and Consumer Protection of North Rhine-Westphalia, Recklinghausen, Germany
- Thuenen Institut of Forest Ecosystems, 16225, Eberswalde, Germany
| | - Nina Van Tiel
- Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland
- Environmetnal Computational Science and Earth Observation Laboratory, EPFL, Lausanne, Switzerland
| | - Thomas W Crowther
- Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland
| | - Colin Averill
- Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland
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Zhang Y, Yan Y, Huang JG, Wang M. Interguild fungal competition in litter and soil inversely modulate microbial necromass accumulation during Loess Plateau forest succession. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 916:170259. [PMID: 38253096 DOI: 10.1016/j.scitotenv.2024.170259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 01/16/2024] [Accepted: 01/16/2024] [Indexed: 01/24/2024]
Abstract
Microbial interactions determine ecosystem carbon (C) and nutrient cycling, yet it remains unclear how interguild fungal interactions modulate microbial residue contribution to soil C pools (SOC) during forest succession. Here, we present a region-wide investigation of the relative dominance of saprophytic versus symbiotic fungi in litter and soil compartments, exploring their linkages to soil microbial residue pools and potential drivers along a chronosequence of secondary Chinese pine (Pinus tabulaeformis) forests on the Loess Plateau. Despite minor changes in C and nitrogen (N) stocks in the litter or soil layers across successional stages, we found significantly lower soil phosphorus (P) stocks, higher ratios of soil C: N, soil N: P and soil C: P but lower ratios of litter C: N and litter C: P in old (>75 years) than young stands (<30 years). Pine stand development altered the saprotroph: symbiotroph ratios of fungal communities to favor the soil symbiotrophs versus the litter saprotrophs. The dominance of saprotrophs in litter is positively related to microbial necromass contribution to SOC, which is negatively related to the dominance of symbiotrophs in soils. Antagonistic interguild fungal competition in litter and soil layers, in conjunction with increased fungal but decreased bacterial necromass contribution to SOC, jointly contribute to unchanged total necromass contribution to SOC with stand development. The saprotroph: symbiotroph ratios in litter and soil layers are mainly driven by soil P stocks and stand parameters (e.g., stand age and slope), respectively, while substrate stoichiometries primarily regulate microbial necromass accumulation and fungal: bacterial necromass ratios. These results provide novel insights into how microbial interactions at local spatial scales modulate temporal changes in SOC pools, with management implications for mitigating regional land degradation.
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Affiliation(s)
- Yaling Zhang
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, 723 Xingke Road, Tianhe District, Guangzhou 510650, China
| | - Yuqi Yan
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, 723 Xingke Road, Tianhe District, Guangzhou 510650, China; University of Chinese Academy of Sciences, Yanqihu East Road, Huairou District, Beijing 101400, China
| | - Jian-Guo Huang
- Key Laboratory of Conservation Biology for Endangered Wildlife of the Ministry of Education, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Minhuang Wang
- School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China.
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29
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Op De Beeck M, Troein C, Peterson C, Tunlid A, Persson P. Elucidating fungal decomposition of organic matter at sub-micrometer spatial scales using optical photothermal infrared (O-PTIR) microspectroscopy. Appl Environ Microbiol 2024; 90:e0148923. [PMID: 38289133 PMCID: PMC10880621 DOI: 10.1128/aem.01489-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Accepted: 12/11/2023] [Indexed: 02/22/2024] Open
Abstract
In microbiological studies, a common goal is to link environmental factors to microbial activities. Both environmental factors and microbial activities are typically derived from bulk samples. It is becoming increasingly clear that such bulk environmental parameters poorly represent the microscale environments microorganisms experience. Using infrared (IR) microspectroscopy, the spatial distribution of chemical compound classes can be visualized, making it a useful tool for studying the interactions between microbial cells and their microenvironments. The spatial resolution of conventional IR microspectroscopy has been limited by the diffraction limit of IR light. The recent development of optical photothermal infrared (O-PTIR) microspectroscopy has pushed the spatial resolution of IR microspectroscopy beyond this diffraction limit, allowing the distribution of chemical compound classes to be visualized at sub-micrometer spatial scales. To examine the potential and limitations of O-PTIR microspectroscopy to probe the interactions between fungal cells and their immediate environments, we imaged the decomposition of cellulose films by cells of the ectomycorrhizal fungus Paxillus involutus and compared O-PTIR results using conventional IR microspectroscopy. Whereas the data collected with conventional IR microspectroscopy indicated that P. involutus has only a very limited ability to decompose cellulose films, O-PTIR data suggested that the ability of P. involutus to decompose cellulose was substantial. Moreover, the O-PTIR method enabled the identification of a zone located outside the fungal hyphae where the cellulose was decomposed by oxidation. We conclude that O-PTIR can provide valuable new insights into the abilities and mechanisms by which microorganisms interact with their surrounding environments.IMPORTANCEInfrared (IR) microspectroscopy allows the spatial distribution of chemical compound classes to be visualized. The use of conventional IR microspectroscopy in microbiological studies has been restricted by limited spatial resolution. Recent developments in laser technology have enabled a new class of IR microspectroscopy instruments to be developed, pushing the spatial resolution beyond the diffraction limit of IR light to approximately 500 nm. This improved spatial resolution now allows microscopic observations of changes in chemical compounds to be made, making IR microspectroscopy a useful tool to investigate microscale changes in chemistry that are caused by microbial activity. We show these new possibilities using optical photothermal infrared microspectroscopy to visualize the changes in cellulose substrates caused by oxidation by the ectomycorrhizal fungus Paxillus involutus at the interface between individual fungal hyphae and cellulose substrates.
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Affiliation(s)
| | - Carl Troein
- Centre for Environmental and Climate Science, Lund University, Lund, Sweden
| | - Carsten Peterson
- Centre for Environmental and Climate Science, Lund University, Lund, Sweden
| | - Anders Tunlid
- Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
| | - Per Persson
- Centre for Environmental and Climate Science, Lund University, Lund, Sweden
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Burak K, Yanardağ İH, Gómez-López MD, Faz Á, Yalçin H, Sakin E, Ramazanoğlu E, Orak AB, Yanardağ A. The effect of arbuscular mycorrhizal fungi on biological activity and biochemical properties of soil under vetch growing conditions in calcareous soils. Heliyon 2024; 10:e24820. [PMID: 38352785 PMCID: PMC10861976 DOI: 10.1016/j.heliyon.2024.e24820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2023] [Revised: 01/14/2024] [Accepted: 01/15/2024] [Indexed: 02/16/2024] Open
Abstract
Due to soils from arid regions with high lime and low organic matter content, farmers receive low yields along with high costs of agricultural inputs, which causes them to look for a solution. In this context, Arbuscular mycorrhizal fungi (AMF) have great potential to reduce fertilizer use by mediating soil nutrient cycles. However, little is known about studies of AMF inoculum on microbial biomass carbon (C), nitrogen (N), and phosphorus (P) cycling during vetch plant vegetation in calcareous areas. In this study, changes in soil biogeochemical properties related to soil C, N, and P cycling were investigated with five different AMF inoculations under vetch (common Vetch (CV; Vicia sativa L.) and Narbonne Vetch (NV; Vicia narbonensis L.) growing conditions. For the field study, a total of five different mycorrhizae were used in the experiment with the random plots design. AMF inoculation decreased the lime content of the soil, and the highest decrease was observed in NV with Glomus (G.) intraradices + G. constrictum + G. microcarpum inoculation (24.41 %). The highest MBC content was recorded in CV vetch G. intraradices (1176.3 mg C kg-1) and the highest MBN content in NV vetch G. intraradices + G. constrictum + G. microcarpum (1356.9 mg C kg-1). CAT activity of soils was highest in CV vetch G. intraradices (31.43 %) and lowest in NV vetch G. intraradices + G. constrictum + G. microcarpum (72.88 %), urease enzyme activity decreased in all treatments except G. constrictum + Gigaspora sp. and G. mosseae inoculations in CV. The highest DHG activity was detected in GF (15.72 %) AMFs in CV and GI (21.99 %) in NV. APA activity was highest in Glomus constrictum + Gigaspora sp. (23.33 %) in CV and Glomus fasciculatum (10.08 %) in NV. In CV plots, G. intraradices + G. constrictum + G. microcarpum (91.67 %) isolates had the highest and G. intraradices community had the lowest RC% (97.33 %) in mixed mycorrhiza species, while in NV plots G. fasciculatum inoculum had the highest and G. intraradices community had the lowest RC%. This study has important implications for the application of AMF for sustainable agriculture. When the results of the study were evaluated, the most effective AMF isolates in terms of C, N, and P cycles were G. constrictum + G. fasciculatum + Gigaspora sp. in Common vetch variety, and G. intraradices in Narbonne vetch variety.
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Affiliation(s)
- Kader Burak
- Department of Soil Science and Plant Nutrition, Agriculture Faculty, Harran University, Sanliurfa, Turkey
| | - İbrahim Halil Yanardağ
- Soil Science and Plant Nutrition Department, Malatya Turgut Ozal University, Battalgazi, Malatya, Turkey
| | - María Dolores Gómez-López
- Sustainable Use, Management and Reclamation of Soil and Water Research Group, ETSIA, Universidad Politécnica de Cartagena, Paseo Alfonso XIII, 48, 30203 Cartagena, Spain
| | - Ángel Faz
- Sustainable Use, Management and Reclamation of Soil and Water Research Group, ETSIA, Universidad Politécnica de Cartagena, Paseo Alfonso XIII, 48, 30203 Cartagena, Spain
| | - Hamza Yalçin
- Department of Soil Science and Plant Nutrition, Agriculture Faculty, Harran University, Sanliurfa, Turkey
| | - Erdal Sakin
- Department of Soil Science and Plant Nutrition, Agriculture Faculty, Harran University, Sanliurfa, Turkey
| | - Emrah Ramazanoğlu
- Department of Soil Science and Plant Nutrition, Agriculture Faculty, Harran University, Sanliurfa, Turkey
| | - Aysel Bars Orak
- Republic of Türkiye Ministry of Agriculture and Forestry Directorate of Plant Protection Central Research Institute, Diyarbakır, Turkey
| | - Asuman Yanardağ
- Soil Science and Plant Nutrition Department, Malatya Turgut Ozal University, Battalgazi, Malatya, Turkey
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31
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Wu H, Cui H, Fu C, Li R, Qi F, Liu Z, Yang G, Xiao K, Qiao M. Unveiling the crucial role of soil microorganisms in carbon cycling: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 909:168627. [PMID: 37977383 DOI: 10.1016/j.scitotenv.2023.168627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 11/13/2023] [Accepted: 11/14/2023] [Indexed: 11/19/2023]
Abstract
Soil microorganisms, by actively participating in the decomposition and transformation of organic matter through diverse metabolic pathways, play a pivotal role in carbon cycling within soil systems and contribute to the stabilization of organic carbon, thereby influencing soil carbon storage and turnover. Investigating the processes, mechanisms, and driving factors of soil microbial carbon cycling is crucial for understanding the functionality of terrestrial carbon sinks and effectively addressing climate change. This review comprehensively discusses the role of soil microorganisms in soil carbon cycling from three perspectives: metabolic pathways, microbial communities, and environmental influences. It elucidates the roles of different microbial species in carbon cycling and highlights the impact of microbial interactions and environmental factors on carbon cycling. Through the synthesis of 2171 relevant papers in the Web of Science Core database, we elucidated the ecological community structure, activity, and assembly mechanisms of soil microorganisms crucial to the soil carbon cycle that have been widely analyzed. The integration of soil microbial carbon cycle and its driving factors are vital for accurately predicting and modeling biogeochemical cycles and effectively addressing the challenges posed by global climate change. Such integration is vital for accurately predicting and modeling biogeochemical cycles and effectively addressing the challenges posed by global climate change.
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Affiliation(s)
- Haowei Wu
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Huiling Cui
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Chenxi Fu
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Ran Li
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Fengyuan Qi
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Zhelun Liu
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Guang Yang
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Keqing Xiao
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China.
| | - Min Qiao
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China.
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32
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Piñeiro J, Dang C, Walkup JGV, Kuzniar T, Winslett R, Blazewicz SJ, Freedman ZB, Brzostek E, Morrissey EM. Shifts in bacterial traits under chronic nitrogen deposition align with soil processes in arbuscular, but not ectomycorrhizal-associated trees. GLOBAL CHANGE BIOLOGY 2024; 30:e17030. [PMID: 38010627 DOI: 10.1111/gcb.17030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 10/13/2023] [Accepted: 10/19/2023] [Indexed: 11/29/2023]
Abstract
Nitrogen (N) deposition increases soil carbon (C) storage by reducing microbial activity. These effects vary in soil beneath trees that associate with arbuscular (AM) and ectomycorrhizal (ECM) fungi. Variation in carbon C and N uptake traits among microbes may explain differences in soil nutrient cycling between mycorrhizal associations in response to high N loads, a mechanism not previously examined due to methodological limitations. Here, we used quantitative Stable Isotope Probing (qSIP) to measure bacterial C and N assimilation rates from an added organic compound, which we conceptualize as functional traits. As such, we applied a trait-based approach to explore whether variation in assimilation rates of bacterial taxa can inform shifts in soil function under chronic N deposition. We show taxon-specific and community-wide declines of bacterial C and N uptake under chronic N deposition in both AM and ECM soils. N deposition-induced reductions in microbial activity were mirrored by declines in soil organic matter mineralization rates in AM but not ECM soils. Our findings suggest C and N uptake traits of bacterial communities can predict C cycling feedbacks to N deposition in AM soils, but additional data, for instance on the traits of fungi, may be needed to connect microbial traits with soil C and N cycling in ECM systems. Our study also highlights the potential of employing qSIP in conjunction with trait-based analytical approaches to inform how ecological processes of microbial communities influence soil functioning.
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Affiliation(s)
- Juan Piñeiro
- Division of Plant and Soil Sciences, West Virginia University, Morgantown, West Virginia, USA
- School of Forest Engineering and Natural Resources, Polytechnic University of Madrid, Madrid, Spain
| | - Chansotheary Dang
- Division of Plant and Soil Sciences, West Virginia University, Morgantown, West Virginia, USA
| | - Jeth G V Walkup
- Division of Plant and Soil Sciences, West Virginia University, Morgantown, West Virginia, USA
| | - Teagan Kuzniar
- Division of Plant and Soil Sciences, West Virginia University, Morgantown, West Virginia, USA
| | - Rachel Winslett
- Division of Plant and Soil Sciences, West Virginia University, Morgantown, West Virginia, USA
| | | | - Zachary B Freedman
- Department of Soil Science, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Edward Brzostek
- Department of Biology, West Virginia University, Morgantown, West Virginia, USA
| | - Ember M Morrissey
- Division of Plant and Soil Sciences, West Virginia University, Morgantown, West Virginia, USA
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33
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Verrone V, Gupta A, Laloo AE, Dubey RK, Hamid NAA, Swarup S. Organic matter stability and lability in terrestrial and aquatic ecosystems: A chemical and microbial perspective. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167757. [PMID: 37852479 DOI: 10.1016/j.scitotenv.2023.167757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 10/06/2023] [Accepted: 10/10/2023] [Indexed: 10/20/2023]
Abstract
Terrestrial and aquatic ecosystems have specific carbon fingerprints and sequestration potential, due to the intrinsic properties of the organic matter (OM), mineral content, environmental conditions, and microbial community composition and functions. A small variation in the OM pool can imbalance the carbon dynamics that ultimately affect the climate and functionality of each ecosystem, at regional and global scales. Here, we review the factors that continuously contribute to carbon stability and lability, with particular attention to the OM formation and nature, as well as the microbial activities that drive OM aggregation, degradation and eventually greenhouse gas emissions. We identified that in both aquatic and terrestrial ecosystems, microbial attributes (i.e., carbon metabolism, carbon use efficiency, necromass, enzymatic activities) play a pivotal role in transforming the carbon stock and yet they are far from being completely characterised and not often included in carbon estimations. Therefore, future research must focus on the integration of microbial components into carbon mapping and models, as well as on translating molecular-scaled studies into practical approaches. These strategies will improve carbon management and restoration across ecosystems and contribute to overcome current climate challenges.
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Affiliation(s)
- Valeria Verrone
- National University of Singapore Environmental Research Institute, National University of Singapore,117411, Singapore
| | - Abhishek Gupta
- Singapore Centre of Environmental Engineering and Life Sciences, National University of Singapore, Singapore.
| | - Andrew Elohim Laloo
- National University of Singapore Environmental Research Institute, National University of Singapore,117411, Singapore; Singapore Centre of Environmental Engineering and Life Sciences, National University of Singapore, Singapore
| | - Rama Kant Dubey
- National University of Singapore Environmental Research Institute, National University of Singapore,117411, Singapore; Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore; Department of Biotechnology, GLA University, Mathura, Uttar Pradesh 281406, India
| | - Nur Ashikin Abdul Hamid
- National University of Singapore Environmental Research Institute, National University of Singapore,117411, Singapore
| | - Sanjay Swarup
- National University of Singapore Environmental Research Institute, National University of Singapore,117411, Singapore; Singapore Centre of Environmental Engineering and Life Sciences, National University of Singapore, Singapore; Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore
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34
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Carrell AA, Clark M, Jawdy S, Muchero W, Alexandre G, Labbé JL, Rush TA. Interactions with microbial consortia have variable effects in organic carbon and production of exometabolites among genotypes of Populus trichocarpa. PLANT DIRECT 2023; 7:e544. [PMID: 38028650 PMCID: PMC10660807 DOI: 10.1002/pld3.544] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Revised: 10/11/2023] [Accepted: 10/13/2023] [Indexed: 12/01/2023]
Abstract
Poplar is a short-rotation woody crop frequently studied for its significance as a sustainable bioenergy source. The successful establishment of a poplar plantation partially depends on its rhizosphere-a dynamic zone governed by complex interactions between plant roots and a plethora of commensal, mutualistic, symbiotic, or pathogenic microbes that shape plant fitness. In an exploratory endeavor, we investigated the effects of a consortium consisting of ectomycorrhizal fungi and a beneficial Pseudomonas sp. strain GM41 on plant growth (including height, stem girth, leaf, and root growth) and as well as growth rate over time, across four Populus trichocarpa genotypes. Additionally, we compared the level of total organic carbon and plant exometabolite profiles across different poplar genotypes in the presence of the microbial consortium. These data revealed no significant difference in plant growth parameters between the treatments and the control across four different poplar genotypes at 7 weeks post-inoculation. However, total organic carbon and exometabolite profiles were significantly different between the genotypes and the treatments. These findings suggest that this microbial consortium has the potential to trigger early signaling responses in poplar, influencing its metabolism in ways crucial for later developmental processes and stress tolerance.
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Affiliation(s)
- Alyssa A. Carrell
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTennesseeUSA
| | - Miranda Clark
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTennesseeUSA
| | - Sara Jawdy
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTennesseeUSA
| | | | - Gladys Alexandre
- Department of Biochemistry and Cellular and Molecular BiologyUniversity of Tennessee‐KnoxvilleKnoxvilleTennesseeUSA
| | - Jesse L. Labbé
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTennesseeUSA
- Present address:
Technology HoldingSalt Lake CityUtahUSA
| | - Tomás A. Rush
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTennesseeUSA
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35
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de Souza TAF, de Lucena EO, Nascimento GDS, da Silva LJR. Biochemical characterization and mycorrhizal fungal community of plant species in the Brazilian seasonal dry forest. J Basic Microbiol 2023; 63:1242-1253. [PMID: 37507826 DOI: 10.1002/jobm.202300269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 07/03/2023] [Accepted: 07/12/2023] [Indexed: 07/30/2023]
Abstract
Invasive alien plant species (IAPS) have the ability to change the biochemical properties and the arbuscular mycorrhizal fungal (AMF) community structure in their rhizosphere. Organic acids, microbial activity, and AMF play a key role in the invader's spread and also has interactions with the soil chemical factors. Our aim here was to assess the rhizosphere's biochemical factors, AMF community composition, and soil chemical properties associated with Cryptostegia madagascariensis (IAPS) and Mimosa tenuiflora (endemic plant species) from the Brazilian Seasonal Dry Forest. The highest values of total glomalin (5.87 mg g-1 soil), root colonization (54.5%), oxalic and malic acids (84.21 and 3.01 μmol g-1 , respectively), microbial biomass C (mg kg-1 ), Na+ (0.080 cmolc kg-1 ), Ca2+ (7.04 cmolc kg-1 ), and soil organic carbon (4.59 g kg-1 ) were found in the rhizosphere of C. madagascariensis. We found dissimilarities on AMF community structure considering the studied plant species: (i) Racocetra coralloidea, Dentiscutata heterogama, Dentiscutata cerradensis, Gigaspora decipiens, and AMF's richness were highly correlated with the rhizosphere of M. tenuiflora; and (ii). The rhizosphere of C. madagascariensis was highly correlated with the abundance of Claroideoglomus etunicatum, Rhizoglomus aggregatum, Funneliformis mosseae, and Funneliformis geosporum. The results of our study highlight the importance of considering C. madagascariensis as potential hosts for AMF species from Glomerales, and a potential plant species that increase the bioavailability of exchangeable Na and Ca at semi-arid conditions.
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Affiliation(s)
- Tancredo Augusto Feitosa de Souza
- Postgraduate Program in Soil Science, Department of Soils and Rural Engineering, Federal University of Paraiba, Areia, Paraiba, Brazil
- Department of Life Sciences, Centre for Functional Ecology, University of Coimbra, Coimbra, Portugal
| | - Edjane Oliveira de Lucena
- Postgraduate Program in Soil Science, Department of Soils and Rural Engineering, Federal University of Paraiba, Areia, Paraiba, Brazil
| | - Gislaine Dos Santos Nascimento
- Postgraduate Program in Soil and Water Management, Federal Rural University of the Semi-Arid, Mossoró, Rio Grande do Norte, Brazil
| | - Lucas Jónatan Rodrigues da Silva
- Postgraduate Program in Agronomy, Department of Soil and Environment Resources, College of Agronomic Sciences, São Paulo State University, Botucatu, São Paulo, Brazil
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Raza T, Qadir MF, Khan KS, Eash NS, Yousuf M, Chatterjee S, Manzoor R, Rehman SU, Oetting JN. Unrevealing the potential of microbes in decomposition of organic matter and release of carbon in the ecosystem. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 344:118529. [PMID: 37418912 DOI: 10.1016/j.jenvman.2023.118529] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Revised: 06/13/2023] [Accepted: 06/25/2023] [Indexed: 07/09/2023]
Abstract
Organic matter decomposition is a biochemical process with consequences affecting climate change and ecosystem productivity. Once decomposition begins, C is lost as CO2 or sequestered into more recalcitrant carbon difficult to further degradation. As microbial respiration releases carbon dioxide into the atmosphere, microbes act as gatekeepers in the whole process. Microbial activities were found to be the second largest CO2 emission source in the environment after human activities (industrialization), and research investigations suggest that this may have affected climate change over the past few decades. It is crucial to note that microbes are major contributors in the whole C cycle (decomposition, transformation, and stabilization). Therefore, imbalances in the C cycle might be causing changes in the entire carbon content of the ecosystem. The significance of microbes, especially soil bacteria in the terrestrial carbon cycle requires more attention. This review focuses on the factors that affect microorganism behavior during the breakdown of organic materials. The key factors affecting the microbial degradation processes are the quality of the input material, nitrogen, temperature, and moisture content. In this review, we suggest that to address global climate change and its effects on agricultural systems and vice versa, there is a need to double-up on efforts and conduct new research studies to further evaluate the potential of microbial communities to reduce their contribution to terrestrial carbon emission.
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Affiliation(s)
- Taqi Raza
- The Biosystems Engineering & Soil Science, University of Tennessee, Knoxville, USA.
| | - Muhammad Farhan Qadir
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad 38040, Pakistan
| | - Khuram Shehzad Khan
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, China Agricultural University, Beijing 100193, China
| | - Neal S Eash
- The Biosystems Engineering & Soil Science, University of Tennessee, Knoxville, USA
| | - Muhammad Yousuf
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad 38040, Pakistan
| | - Sumanta Chatterjee
- USDA ARS, Hydrology and Remote Sensing Laboratory, 10300 Baltimore Avenue, Beltsville, MD 20705, USA; ICAR-National Rice Research Institute, Cuttack 753006, India
| | - Rabia Manzoor
- Land Resources Research Institute, National Agricultural Research Centre, Islamabad, Pakistan
| | - Sana Ur Rehman
- National Research Center of Intercropping, The Islamia University of Bahawalpur, Pakistan
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Tibihenda C, Zhong H, Liu K, Dai J, Lin X, Motelica-Heino M, Hou S, Zhang M, Lu Y, Xiao L, Zhang C. Ecologically different earthworm species are the driving force of microbial hotspots influencing Pb uptake by the leafy vegetable Brassica campestris. Front Microbiol 2023; 14:1240707. [PMID: 37860140 PMCID: PMC10582336 DOI: 10.3389/fmicb.2023.1240707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 09/11/2023] [Indexed: 10/21/2023] Open
Abstract
Food chain contamination by soil lead (Pb), beginning with Pb uptake by leafy vegetables, is a threat to food safety and poses a potential risk to human health. This study highlights the importance of two ecologically different earthworm species (the anecic species Amynthas aspergillum and the epigeic species Eisenia fetida) as the driving force of microbial hotspots to enhance Pb accumulation in the leafy vegetable Brassica campestris at different Pb contamination levels (0, 100, 500, and 1,000 mg·kg-1). The fingerprints of phospholipid fatty acids (PLFAs) were employed to reveal the microbial mechanism of Pb accumulation involving earthworm-plant interaction, as PLFAs provide a general profile of soil microbial biomass and community structure. The results showed that Gram-positive (G+) bacteria dominated the microbial community. At 0 mg·kg-1 Pb, the presence of earthworms significantly reduced the total PLFAs. The maximum total of PLFAs was found at 100 mg·kg-1 Pb with E. fetida inoculation. A significant shift in the bacterial community was observed in the treatments with E. fetida inoculation at 500 and 1,000 mg·kg-1 Pb, where the G+/G- bacteria ratio was significantly decreased compared to no earthworm inoculation. Principal component analysis (PCA) showed that E. fetida had a greater effect on soil microbial hotspots than A. aspergillum, thus having a greater effect on the Pb uptake by B. campestris. Redundancy analysis (RDA) showed that soil microbial biomass and structure explained 43.0% (R2 = 0.53) of the total variation in Pb uptake by B. campestris, compared to 9.51% of microbial activity. G- bacteria explained 23.2% of the total variation in the Pb uptake by B. campestris, significantly higher than the other microbes. The Mantel test showed that microbial properties significantly influenced Pb uptake by B. campestris under the driving force of earthworms. E. fetida inoculation was favorable for the G- bacterial community, whereas A. aspergillum inoculation was favorable for the fungal community. Both microbial communities facilitated the entry of Pb into the vegetable food chain system. This study delivers novel evidence and meaningful insights into how earthworms prime the microbial mechanism of Pb uptake by leafy vegetables by influencing soil microbial biomass and community composition. Comprehensive metagenomics analysis can be employed in future studies to identify the microbial strains promoting Pb migration and develop effective strategies to mitigate Pb contamination in food chains.
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Affiliation(s)
- Cevin Tibihenda
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
- Tanzania Agricultural Research Institute, Dodoma, Tanzania
| | - Hesen Zhong
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
| | - Kexue Liu
- School of Resources and Planning, Guangzhou Xinhua University, Guangzhou, China
| | - Jun Dai
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
| | - Xiaoqin Lin
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
| | | | - Shuyu Hou
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
| | - Menghao Zhang
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
| | - Ying Lu
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
| | - Ling Xiao
- Department of Civil and Environmental Engineering, Shantou University, Shantou, China
| | - Chi Zhang
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
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Cha L, Feng H, Wu M, Xing J, Li J, Chen Q. Effects of extracellular enzymes secreted by wild edible fungi mycelia on the surface properties of local soil colloids. ENVIRONMENTAL TECHNOLOGY 2023; 44:3721-3730. [PMID: 35481458 DOI: 10.1080/09593330.2022.2071639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 04/14/2022] [Indexed: 06/14/2023]
Abstract
The extracellular enzymes secreted by wild edible fungi mycelia participate in a series of physiochemical reactions in soil, thereby changing the surface properties of local soil colloids irreversibly. However, the reaction process and mechanism were generally ignored, leading to a misunderstanding of local soil functions. In this work, the soil samples collected from areas where growing wild edible fungi were selected as model substances, and the effects of extracellular enzymes (α-amylase, β-glucosidase, and peroxidase) secreted by wild edible fungi mycelia on the physicochemical properties of soil colloids were explored. After adding extracellular enzymes, the pores and fissures between the lamellar sheets were observed more obviously and the surface heights decreased significantly, especially after adding α-amylase. The addition of extracellular enzymes increased the electronegativity and the suspension stability of soil colloids owing to the decrease in their polarity and water solubility. The added extracellular enzymes might be adsorbed on the organic and inorganic components in soil colloids and could promote the decomposition of soil organic matter, thereby changing the physicochemical properties of soil colloids and improving the soil quality. The results will lay a theoretical foundation for understanding the soil function in the areas where growing wild edible fungi.
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Affiliation(s)
- Lijuan Cha
- Yunnan Provincial Key Lab of Soil Carbon Sequestration and Pollution Control, Faculty of Environmental Science & Engineering, Kunming University of Science & Technology, Kunming, Yunnan, People's Republic of China
| | - Hongjuan Feng
- Yunnan Provincial Key Lab of Soil Carbon Sequestration and Pollution Control, Faculty of Environmental Science & Engineering, Kunming University of Science & Technology, Kunming, Yunnan, People's Republic of China
| | - Min Wu
- Yunnan Provincial Key Lab of Soil Carbon Sequestration and Pollution Control, Faculty of Environmental Science & Engineering, Kunming University of Science & Technology, Kunming, Yunnan, People's Republic of China
| | - Jing Xing
- Yunnan Provincial Key Lab of Soil Carbon Sequestration and Pollution Control, Faculty of Environmental Science & Engineering, Kunming University of Science & Technology, Kunming, Yunnan, People's Republic of China
| | - Jing Li
- Yunnan Provincial Key Lab of Soil Carbon Sequestration and Pollution Control, Faculty of Environmental Science & Engineering, Kunming University of Science & Technology, Kunming, Yunnan, People's Republic of China
| | - Quan Chen
- Yunnan Provincial Key Lab of Soil Carbon Sequestration and Pollution Control, Faculty of Environmental Science & Engineering, Kunming University of Science & Technology, Kunming, Yunnan, People's Republic of China
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Wang X, Yan G, Liu W, Chen H, Yuan Q, Wang Z, Liu H. Endophytic Beauveria bassiana of Tomato Resisted the Damage from Whitefly Bemisia tabaci by Mediating the Accumulation of Plant-Specialized Metabolites. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:13244-13254. [PMID: 37646319 PMCID: PMC10510379 DOI: 10.1021/acs.jafc.3c03679] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 08/16/2023] [Accepted: 08/22/2023] [Indexed: 09/01/2023]
Abstract
Beauveria bassiana acts as an endophytic fungus that controls herbivorous pests by stimulating plant defenses and inducing systemic resistance. Through multiomics analysis, 325 differential metabolites and 1739 differential expressed genes were observed in tomatoes treated with B. bassiana by root irrigation; meanwhile, 152 differential metabolites and 1002 differential genes were observed in tomatoes treated by local leaf spraying. Among the upregulated metabolites were α-solanine, 5-O-caffeoylshikimic acid, clerodendrin A, and peucedanin, which demonstrated anti-insect activity. These differential metabolites were primarily associated with alkaloid biosynthesis, flavonoid biosynthesis, and tryptophan metabolism pathways. Furthermore, the gene silencing of UDP-glucose:sterol glucosyltransferase, a gene involved in α-solanine synthesis, indicated that B. bassiana could inhibit the reproduction of whiteflies by regulating α-solanine. This study highlighted the ability of B. bassiana to modulate plant secondary metabolites and emphasized the significance of understanding and harnessing multitrophic interactions of endophytic B. bassiana for sustainable agriculture.
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Affiliation(s)
- Xian Wang
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
| | - Ganwei Yan
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
| | - Wenjie Liu
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
| | - Haolin Chen
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
| | - Qian Yuan
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
| | - Ziying Wang
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
| | - Huai Liu
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
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Yang L, Xu R, Joardar A, Amponsah M, Sharifi N, Dong B, Qin Z. Design and build a green tent environment for growing and charactering mycelium growth in lab. LAB ON A CHIP 2023; 23:4044-4051. [PMID: 37606082 DOI: 10.1039/d3lc00336a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/23/2023]
Abstract
Mycelium-based materials have seen a surge in popularity in the manufacturing industry in recent years. This study aims to build a lab-scale experimental facility to investigate mycelium growth under a well-controlled temperature and humidity environment and explore how substrates of very different chemical and mechanical properties can affect the microscopic morphology of the mycelium fibers during growth. Here, we design and build a customized green tent with good thermal and humidity insulation for controlling the temperature and humidity and monitor the environmental data with an Arduino chip. We develop our procedure to grow mycelium from spores to fibrous networks. It is shown that a hydrogel substrate with soluble nutrition is more favorite for mycelium growth than a hardwood board and leads to higher growing speed. We take many microscopic images of the mycelium fibers on the hardwood board and the hydrogel substrate and found no significant difference in diameter (∼3 μm). This research provides a foundation to explore the mechanism of mycelium growth and explore the environmentally friendly and time-efficient method of its growth.
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Affiliation(s)
- Libin Yang
- Laboratory for Multiscale Material Modelling, Syracuse University, 151L Link Hall, Syracuse University, Syracuse, NY 13244, USA.
- Department of Civil and Environmental Engineering, Syracuse University, 151L Link Hall, Syracuse University, Syracuse, NY 13244, USA
| | - Ruohan Xu
- Laboratory for Multiscale Material Modelling, Syracuse University, 151L Link Hall, Syracuse University, Syracuse, NY 13244, USA.
- Department of Civil and Environmental Engineering, Syracuse University, 151L Link Hall, Syracuse University, Syracuse, NY 13244, USA
- Department of Mechanical and Aerospace Engineering, Syracuse University, 263 Link Hall, Syracuse University, Syracuse, NY 13244, USA
| | - Anushka Joardar
- Laboratory for Multiscale Material Modelling, Syracuse University, 151L Link Hall, Syracuse University, Syracuse, NY 13244, USA.
- Jamesville DeWitt Highschool, 6845 Edinger Dr, Dewitt, NY 13214, USA
| | - Michael Amponsah
- Laboratory for Multiscale Material Modelling, Syracuse University, 151L Link Hall, Syracuse University, Syracuse, NY 13244, USA.
- Liverpool High School, 4338 Wetzel Rd, Liverpool, NY 13090, USA
| | - Nina Sharifi
- Syracuse University School of Architecture, Slocum Hall, Syracuse, NY 13244, USA
- Applied Sciences and Technology Research in Architecture Lab, Syracuse Center of Excellence, Syracuse, NY, USA
| | - Bing Dong
- Department of Mechanical and Aerospace Engineering, Syracuse University, 263 Link Hall, Syracuse University, Syracuse, NY 13244, USA
- Built Environment Science and Technology (BEST) Lab, Syracuse University, 403 SyracuseCoE, Syracuse, NY 13244, USA
| | - Zhao Qin
- Laboratory for Multiscale Material Modelling, Syracuse University, 151L Link Hall, Syracuse University, Syracuse, NY 13244, USA.
- Department of Civil and Environmental Engineering, Syracuse University, 151L Link Hall, Syracuse University, Syracuse, NY 13244, USA
- The BioInspired Institute, Syracuse University, NY 13244, USA
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Akbar M, Chohan SA, Yasin NA, Ahmad A, Akram W, Nazir A. Mycorrhizal inoculation enhanced tillering in field grown wheat, nutritional enrichment and soil properties. PeerJ 2023; 11:e15686. [PMID: 37719109 PMCID: PMC10504892 DOI: 10.7717/peerj.15686] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Accepted: 06/14/2023] [Indexed: 09/19/2023] Open
Abstract
To meet food security, commercial fertilizers are available to boost wheat yield, but there are serious ill effects associated with these fertilizers. Amongst various organic alternatives, inoculating crop fields with mycorrhizal species is the most promising option. Although, mycorrhizae are known to enhance wheat yield, but how the mycorrhizae influence different yield and quality parameters of wheat, is not clear. Therefore, this study was undertaken to investigate the influence of indigenous mycorrhizal species on the growth of wheat, its nutritional status and soil properties, in repeated set of field experiments. In total 11 species of mycorrhizae were isolated from the experimental sites with Claroideoglomus, being the most dominant one. Five different treatments were employed during the present study, keeping plot size for each replicate as 6 × 2 m. Introduction of consortia of mycorrhizae displayed a significant increase in number of tillers/plant (49.5%), dry biomass (17.4%), grain yield (21.2%) and hay weight (16.7%). However, there was non-significant effect of mycorrhizal inoculation on 1,000 grains weight. Moreover, protein contents were increased to 24.2%. Zinc, iron, phosphorus and potassium concentrations were also increased to 24%, 21%, 30.9% and 14.8%, respectively, in wheat grains. Enhancement effects were also noted on soil fertility such as soil organic carbon % age, available phosphorus and potassium were increased up to 64.7%, 35.8% and 23.9%, respectively. Herein, we concluded that mycorrhizal introduction in wheat fields significantly increased tillering in wheat and this increased tillering resulted in overall increase in wheat biomass/yield. Mycorrhizae also enhanced nutritional attributes of wheat grains as well as soil fertility. The use of mycorrhizae will help to reduce our dependance on synthetic fertilizers in sustainable agriculture.
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Affiliation(s)
- Muhammad Akbar
- Department of Botany, University of Gujrat, Gujrat, Punjab, Pakistan
| | - Safeer A Chohan
- Department of Botany, University of Gujrat, Gujrat, Punjab, Pakistan
| | - Nasim A Yasin
- SSG, RO-II Department, University of the Punjab, Lahore, Punjab, Pakistan
| | - Aqeel Ahmad
- University of Chinese Academy of Sciences, Beijing, Beijing, China
| | - Waheed Akram
- Department of Plant Pathology, University of the Punjab, Lahore, Punjab, Pakistan
| | - Abdul Nazir
- Department of Environmental Sciences, COMSATS University Islamabad, Abbottabad, Pakistan
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Wahab A, Muhammad M, Munir A, Abdi G, Zaman W, Ayaz A, Khizar C, Reddy SPP. Role of Arbuscular Mycorrhizal Fungi in Regulating Growth, Enhancing Productivity, and Potentially Influencing Ecosystems under Abiotic and Biotic Stresses. PLANTS (BASEL, SWITZERLAND) 2023; 12:3102. [PMID: 37687353 PMCID: PMC10489935 DOI: 10.3390/plants12173102] [Citation(s) in RCA: 17] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 08/24/2023] [Accepted: 08/26/2023] [Indexed: 09/10/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) form symbiotic relationships with the roots of nearly all land-dwelling plants, increasing growth and productivity, especially during abiotic stress. AMF improves plant development by improving nutrient acquisition, such as phosphorus, water, and mineral uptake. AMF improves plant tolerance and resilience to abiotic stressors such as drought, salt, and heavy metal toxicity. These benefits come from the arbuscular mycorrhizal interface, which lets fungal and plant partners exchange nutrients, signalling molecules, and protective chemical compounds. Plants' antioxidant defence systems, osmotic adjustment, and hormone regulation are also affected by AMF infestation. These responses promote plant performance, photosynthetic efficiency, and biomass production in abiotic stress conditions. As a result of its positive effects on soil structure, nutrient cycling, and carbon sequestration, AMF contributes to the maintenance of resilient ecosystems. The effects of AMFs on plant growth and ecological stability are species- and environment-specific. AMF's growth-regulating, productivity-enhancing role in abiotic stress alleviation under abiotic stress is reviewed. More research is needed to understand the molecular mechanisms that drive AMF-plant interactions and their responses to abiotic stresses. AMF triggers plants' morphological, physiological, and molecular responses to abiotic stress. Water and nutrient acquisition, plant development, and abiotic stress tolerance are improved by arbuscular mycorrhizal symbiosis. In plants, AMF colonization modulates antioxidant defense mechanisms, osmotic adjustment, and hormonal regulation. These responses promote plant performance, photosynthetic efficiency, and biomass production in abiotic stress circumstances. AMF-mediated effects are also enhanced by essential oils (EOs), superoxide dismutase (SOD), peroxidase (POD), ascorbate peroxidase (APX), hydrogen peroxide (H2O2), malondialdehyde (MDA), and phosphorus (P). Understanding how AMF increases plant adaptation and reduces abiotic stress will help sustain agriculture, ecosystem management, and climate change mitigation. Arbuscular mycorrhizal fungi (AMF) have gained prominence in agriculture due to their multifaceted roles in promoting plant health and productivity. This review delves into how AMF influences plant growth and nutrient absorption, especially under challenging environmental conditions. We further explore the extent to which AMF bolsters plant resilience and growth during stress.
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Affiliation(s)
- Abdul Wahab
- Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
- University of Chinese Academy of Sciences, Beijing 100049, China;
| | - Murad Muhammad
- University of Chinese Academy of Sciences, Beijing 100049, China;
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China
| | - Asma Munir
- Department of Chemistry, Government College Women University, Faisalabad 38000, Pakistan;
| | - Gholamreza Abdi
- Department of Biotechnology, Persian Gulf Research Institute, Persian Gulf University, Bushehr 75169, Iran;
| | - Wajid Zaman
- Department of Life Sciences, Yeungnam University, Gyeongsan 38541, Gyeongbuk, Republic of Korea
| | - Asma Ayaz
- Faculty of Sports Science, Ningbo University, Ningbo 315211, China;
| | - Chandni Khizar
- Institute of Molecular Biology and Biochemistry, University of the Lahore, Lahore 51000, Pakistan;
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Hoosein S, Neuenkamp L, Trivedi P, Paschke MW. AM fungal-bacterial relationships: what can they tell us about ecosystem sustainability and soil functioning? FRONTIERS IN FUNGAL BIOLOGY 2023; 4:1141963. [PMID: 37746131 PMCID: PMC10512368 DOI: 10.3389/ffunb.2023.1141963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Accepted: 07/05/2023] [Indexed: 09/26/2023]
Abstract
Considering our growing population and our continuous degradation of soil environments, understanding the fundamental ecology of soil biota and plant microbiomes will be imperative to sustaining soil systems. Arbuscular mycorrhizal (AM) fungi extend their hyphae beyond plant root zones, creating microhabitats with bacterial symbionts for nutrient acquisition through a tripartite symbiotic relationship along with plants. Nonetheless, it is unclear what drives these AM fungal-bacterial relationships and how AM fungal functional traits contribute to these relationships. By delving into the literature, we look at the drivers and complexity behind AM fungal-bacterial relationships, describe the shift needed in AM fungal research towards the inclusion of interdisciplinary tools, and discuss the utilization of bacterial datasets to provide contextual evidence behind these complex relationships, bringing insights and new hypotheses to AM fungal functional traits. From this synthesis, we gather that interdependent microbial relationships are at the foundation of understanding microbiome functionality and deciphering microbial functional traits. We suggest using pattern-based inference tools along with machine learning to elucidate AM fungal-bacterial relationship trends, along with the utilization of synthetic communities, functional gene analyses, and metabolomics to understand how AM fungal and bacterial communities facilitate communication for the survival of host plant communities. These suggestions could result in improving microbial inocula and products, as well as a better understanding of complex relationships in terrestrial ecosystems that contribute to plant-soil feedbacks.
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Affiliation(s)
- Shabana Hoosein
- Department of Forest and Rangeland Stewardship/Graduate Degree Program in Ecology, Colorado State University, Fort Collins, CO, United States
| | - Lena Neuenkamp
- Institute of Landscape Ecology, Münster University, Münster, Germany
- Department of Ecology and Multidisciplinary Institute for Environment Studies “Ramon Margalef,” University of Alicante, Alicante, Spain
| | - Pankaj Trivedi
- Microbiome Network, Department of Agricultural Biology, Graduate Degree Program in Ecology, Colorado State University, Fort Collins, CO, United States
| | - Mark W. Paschke
- Department of Forest and Rangeland Stewardship/Graduate Degree Program in Ecology, Colorado State University, Fort Collins, CO, United States
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Schlatter DC, Gamble JD, Castle S, Rogers J, Wilson M. Abiotic and Biotic Drivers of Soil Fungal Communities in Response to Dairy Manure Amendment. Appl Environ Microbiol 2023; 89:e0193122. [PMID: 37212685 PMCID: PMC10304672 DOI: 10.1128/aem.01931-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Accepted: 04/24/2023] [Indexed: 05/23/2023] Open
Abstract
Modern agriculture often relies on large inputs of synthetic fertilizers to maximize crop yield potential, yet their intensive use has led to nutrient losses and impaired soil health. Alternatively, manure amendments provide plant available nutrients, build organic carbon, and enhance soil health. However, we lack a clear understanding of how consistently manure impacts fungal communities, the mechanisms via which manure impacts soil fungi, and the fate of manure-borne fungi in soils. We assembled soil microcosms using five soils to investigate how manure amendments impact fungal communities over a 60-day incubation. Further, we used autoclaving treatments of soils and manure to determine if observed changes in soil fungal communities were due to abiotic or biotic properties, and if indigenous soil communities constrained colonization of manure-borne fungi. We found that manure amended soil fungal communities diverged from nonamended communities over time, often in concert with a reduction in diversity. Fungal communities responded to live and autoclaved manure in a similar manner, suggesting that abiotic forces are primarily responsible for the observed dynamics. Finally, manure-borne fungi declined quickly in both live and autoclaved soil, indicating that the soil environment is unsuitable for their survival. IMPORTANCE Manure amendments in agricultural systems can impact soil microbial communities via supplying growth substrates for indigenous microbes or by introducing manure-borne taxa. This study explores the consistency of these impacts on soil fungal communities and the relative importance of abiotic and biotic drivers across distinct soils. Different fungal taxa responded to manure among distinct soils, and shifts in soil fungal communities were driven largely by abiotic factors, rather than introduced microbes. This work demonstrates that manure may have inconsistent impacts on indigenous soil fungi, and that abiotic properties of soils render them largely resistant to invasion by manure-borne fungi.
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Affiliation(s)
| | - Joshua D. Gamble
- USDA-ARS Plant Science Research Unit, Saint Paul, Minnesota, USA
| | - Sarah Castle
- USDA-ARS Plant Science Research Unit, Saint Paul, Minnesota, USA
| | - Julia Rogers
- Department of Soil, Water, and Climate, University of Minnesota, Saint Paul, Minnesota, USA
| | - Melissa Wilson
- Department of Soil, Water, and Climate, University of Minnesota, Saint Paul, Minnesota, USA
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45
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Angst G, Mueller KE, Castellano MJ, Vogel C, Wiesmeier M, Mueller CW. Unlocking complex soil systems as carbon sinks: multi-pool management as the key. Nat Commun 2023; 14:2967. [PMID: 37322013 DOI: 10.1038/s41467-023-38700-5] [Citation(s) in RCA: 21] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Accepted: 05/09/2023] [Indexed: 06/17/2023] Open
Abstract
Much research focuses on increasing carbon storage in mineral-associated organic matter (MAOM), in which carbon may persist for centuries to millennia. However, MAOM-targeted management is insufficient because the formation pathways of persistent soil organic matter are diverse and vary with environmental conditions. Effective management must also consider particulate organic matter (POM). In many soils, there is potential for enlarging POM pools, POM can persist over long time scales, and POM can be a direct precursor of MAOM. We present a framework for context-dependent management strategies that recognizes soils as complex systems in which environmental conditions constrain POM and MAOM formation.
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Affiliation(s)
- Gerrit Angst
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.
- Institute of Biology, Leipzig University, Leipzig, Germany.
- Biology Centre of the Czech Academy of Sciences, Institute of Soil Biology & Biogeochemistry, České Budějovice, Czech Republic.
| | - Kevin E Mueller
- Department of Biological, Geological and Environmental Sciences, Cleveland State University, Cleveland, OH, USA
| | | | - Cordula Vogel
- Soil Resources and Land Use, Institute of Soil Science and Site Ecology, TU Dresden, Dresden, Germany
| | - Martin Wiesmeier
- Institute for Organic Farming, Soil and Resource Management, Bavarian State Research Center for Agriculture, 85354, Freising, Germany
- Chair of Soil Science, TUM School of Life Sciences Weihenstephan, Technical University of Munich, 85354, Freising, Germany
| | - Carsten W Mueller
- Department of Geosciences and Natural Resource Management, University of Copenhagen, Copenhagen, Denmark
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46
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Hawkins HJ, Cargill RIM, Van Nuland ME, Hagen SC, Field KJ, Sheldrake M, Soudzilovskaia NA, Kiers ET. Mycorrhizal mycelium as a global carbon pool. Curr Biol 2023; 33:R560-R573. [PMID: 37279689 DOI: 10.1016/j.cub.2023.02.027] [Citation(s) in RCA: 35] [Impact Index Per Article: 35.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
For more than 400 million years, mycorrhizal fungi and plants have formed partnerships that are crucial to the emergence and functioning of global ecosystems. The importance of these symbiotic fungi for plant nutrition is well established. However, the role of mycorrhizal fungi in transporting carbon into soil systems on a global scale remains under-explored. This is surprising given that ∼75% of terrestrial carbon is stored belowground and mycorrhizal fungi are stationed at a key entry point of carbon into soil food webs. Here, we analyze nearly 200 datasets to provide the first global quantitative estimates of carbon allocation from plants to the mycelium of mycorrhizal fungi. We estimate that global plant communities allocate 3.93 Gt CO2e per year to arbuscular mycorrhizal fungi, 9.07 Gt CO2e per year to ectomycorrhizal fungi, and 0.12 Gt CO2e per year to ericoid mycorrhizal fungi. Based on this estimate, 13.12 Gt of CO2e fixed by terrestrial plants is, at least temporarily, allocated to the underground mycelium of mycorrhizal fungi per year, equating to ∼36% of current annual CO2 emissions from fossil fuels. We explore the mechanisms by which mycorrhizal fungi affect soil carbon pools and identify approaches to increase our understanding of global carbon fluxes via plant-fungal pathways. Our estimates, although based on the best available evidence, are imperfect and should be interpreted with caution. Nonetheless, our estimations are conservative, and we argue that this work confirms the significant contribution made by mycorrhizal associations to global carbon dynamics. Our findings should motivate their inclusion both within global climate and carbon cycling models, and within conservation policy and practice.
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Affiliation(s)
- Heidi-Jayne Hawkins
- Department of Biological Sciences, University of Cape Town, Cape Town 7701, South Africa; Conservation International, Forrest House, Belmont Park, Cape Town 7700, South Africa.
| | - Rachael I M Cargill
- Amsterdam Institute for Life and Environment, Vrije Universiteit, De Boelelaan 1085, NL-1081 HV Amsterdam, The Netherlands; AMOLF, Science Park 102, Amsterdam, The Netherlands
| | - Michael E Van Nuland
- Amsterdam Institute for Life and Environment, Vrije Universiteit, De Boelelaan 1085, NL-1081 HV Amsterdam, The Netherlands; Society for the Protection of Underground Networks, SPUN, 3500 South DuPont Highway, Dover, DE 19901, USA
| | | | - Katie J Field
- Plants, Photosynthesis and Soil, School of Biosciences, The University of Sheffield, Western Bank, Sheffield S10 2TN, UK
| | - Merlin Sheldrake
- Amsterdam Institute for Life and Environment, Vrije Universiteit, De Boelelaan 1085, NL-1081 HV Amsterdam, The Netherlands; Society for the Protection of Underground Networks, SPUN, 3500 South DuPont Highway, Dover, DE 19901, USA
| | | | - E Toby Kiers
- Amsterdam Institute for Life and Environment, Vrije Universiteit, De Boelelaan 1085, NL-1081 HV Amsterdam, The Netherlands; Society for the Protection of Underground Networks, SPUN, 3500 South DuPont Highway, Dover, DE 19901, USA
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47
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Wang B, McCormack ML, Ricciuto DM, Yang X, Iversen CM. Embracing fine-root system complexity in terrestrial ecosystem modeling. GLOBAL CHANGE BIOLOGY 2023; 29:2871-2885. [PMID: 36861355 DOI: 10.1111/gcb.16659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Accepted: 02/15/2023] [Indexed: 05/03/2023]
Abstract
Projecting the dynamics and functioning of the biosphere requires a holistic consideration of whole-ecosystem processes. However, biases toward leaf, canopy, and soil modeling since the 1970s have constantly left fine-root systems being rudimentarily treated. As accelerated empirical advances in the last two decades establish clearly functional differentiation conferred by the hierarchical structure of fine-root orders and associations with mycorrhizal fungi, a need emerges to embrace this complexity to bridge the data-model gap in still extremely uncertain models. Here, we propose a three-pool structure comprising transport and absorptive fine roots with mycorrhizal fungi (TAM) to model vertically resolved fine-root systems across organizational and spatial-temporal scales. Emerging from a conceptual shift away from arbitrary homogenization, TAM builds upon theoretical and empirical foundations as an effective and efficient approximation that balances realism and simplicity. A proof-of-concept demonstration of TAM in a big-leaf model both conservatively and radically shows robust impacts of differentiation within fine-root systems on simulating carbon cycling in temperate forests. Theoretical and quantitative support warrants exploiting its rich potentials across ecosystems and models to confront uncertainties and challenges for a predictive understanding of the biosphere. Echoing a broad trend of embracing ecological complexity in integrative ecosystem modeling, TAM may offer a consistent framework where modelers and empiricists can work together toward this grand goal.
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Affiliation(s)
- Bin Wang
- Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
| | | | - Daniel M Ricciuto
- Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
| | - Xiaojuan Yang
- Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
| | - Colleen M Iversen
- Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
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48
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Basiru S, Ait Si Mhand K, Hijri M. Disentangling arbuscular mycorrhizal fungi and bacteria at the soil-root interface. MYCORRHIZA 2023; 33:119-137. [PMID: 36961605 DOI: 10.1007/s00572-023-01107-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 02/21/2023] [Indexed: 06/08/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) are essential components of the plant root mycobiome and are found in approximately 80% of land plants. As obligate plant symbionts, AMF harbor their own microbiota, both inside and outside the plant root system. AMF-associated bacteria (AAB) possess various functional traits, including nitrogen fixation, organic and inorganic phosphate mobilization, growth hormone production, biofilm production, enzymatic capabilities, and biocontrol against pathogen attacks, which not only contribute to the health of the arbuscular mycorrhizal symbiosis but also promote plant growth. Because of this, there is increasing interest in the diversity, functioning, and mechanisms that underlie the complex interactions between AMF, AAB, and plant hosts. This review critically examines AMF-associated bacteria, focusing on AAB diversity, the factors driving richness and community composition of these bacteria across various ecosystems, along with the physical, chemical, and biological connections that enable AMF to select and recruit beneficial bacterial symbionts on and within their structures and hyphospheres. Additionally, potential applications of these bacteria in agriculture are discussed, emphasizing the potential importance of AMF fungal highways in engineering plant rhizosphere and endophyte bacteria communities, and the importance of a functional core of AAB taxa as a promising tool to improve plant and soil productivity. Thus, AMF and their highly diverse bacterial taxa represent important tools that could be efficiently explored in sustainable agriculture, carbon sequestration, and reduction of greenhouse gas emissions related to nitrogen fertilizer applications. Nevertheless, future studies adopting integrated multidisciplinary approaches are crucial to better understand AAB functional diversity and the mechanisms that govern these tripartite relationships.
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Affiliation(s)
- Sulaimon Basiru
- African Genome Center, Mohammed VI Polytechnic University (UM6P), Lot 660, Hay Moulay Rachid, Ben Guerir, 43150, Morocco
| | - Khadija Ait Si Mhand
- African Genome Center, Mohammed VI Polytechnic University (UM6P), Lot 660, Hay Moulay Rachid, Ben Guerir, 43150, Morocco
| | - Mohamed Hijri
- African Genome Center, Mohammed VI Polytechnic University (UM6P), Lot 660, Hay Moulay Rachid, Ben Guerir, 43150, Morocco.
- Institut de recherche en biologie végétale (IRBV), Département de Sciences Biologiques, Université de Montréal, QC, Montréal, Canada.
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49
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Guo C, Zhang Y, Han J, Liu S, Wang L. A practice study of land and water comprehensive remediation in urban-rural fringe-with Sichuan River Shaanxi Province, Northwest China, as an example. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023:10.1007/s11356-023-27095-x. [PMID: 37198365 DOI: 10.1007/s11356-023-27095-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Accepted: 04/13/2023] [Indexed: 05/19/2023]
Abstract
Urban-rural fringe area (URFa) is an active and expansive region, and its environment is complex and frangible. Previous studies have focused on the landscape spatial pattern changes, the spatial-temporal variability of soil pollutants and the land management and policy issues, etc., but it is lack of the practice study of land and water comprehensive remediation in URFa. This article is taking the Sichuan River, a typical URFa, as an example. Based on field investigation and lab tests, the main characteristic form of the URFa and land and water comprehensive remediation measures are summarized in this paper. The results show that it is feasible to turn wasteland, low-efficiency land, and old deserted beach into farm land, residential land, and ecological land by comprehensive land improvement. For the farm land reconstruction, the texture is an important indicator. The content of soil organic matter (SOM), carbon, nitrogen, and phosphorus has increased after remediation. For the SOM, 58.3% are more than 10.0 g·kg-1, and 79.2% are more than 8.0 g·kg-1. For the frequent dry-off and polluted low flow river channels in URFa, the river bottom consolidation and water purification is the important measures. The water quality meets IV standard of the "Environmental Quality Standards for Surface Water" (GB3838-2002) (State EPA of China, 2002) by pollution treatment after remediation, and water volume keeps balance. The findings of this study are expected to provide support for better construction practices in arid and semiarid area in China and for the improvement of the ecological environment in URFa.
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Affiliation(s)
- Chao Guo
- Shaanxi Provincial Land Engineering Construction Group, Key Laboratory of Degraded and Unused Land Consolidation Engineering, Ministry of Natural Resources, Xi'an, 710071, China.
- Shaanxi Engineering Research Center of Land Consolidation, Shaanxi Provincial Land Consolidation Engineering Technology Research Center, Xi'an, 710071, China.
- Shaanxi Provincial Land Engineering Construction Group, Land Engineering Technology Innovation Center, Ministry of Natural Resources, Xi'an, 710071, China.
| | - Yang Zhang
- Shaanxi Provincial Land Engineering Construction Group, Key Laboratory of Degraded and Unused Land Consolidation Engineering, Ministry of Natural Resources, Xi'an, 710071, China
- Shaanxi Engineering Research Center of Land Consolidation, Shaanxi Provincial Land Consolidation Engineering Technology Research Center, Xi'an, 710071, China
- Shaanxi Provincial Land Engineering Construction Group, Land Engineering Technology Innovation Center, Ministry of Natural Resources, Xi'an, 710071, China
| | - Jichang Han
- Shaanxi Provincial Land Engineering Construction Group, Key Laboratory of Degraded and Unused Land Consolidation Engineering, Ministry of Natural Resources, Xi'an, 710071, China
- Shaanxi Engineering Research Center of Land Consolidation, Shaanxi Provincial Land Consolidation Engineering Technology Research Center, Xi'an, 710071, China
- Shaanxi Provincial Land Engineering Construction Group, Land Engineering Technology Innovation Center, Ministry of Natural Resources, Xi'an, 710071, China
| | - Siqi Liu
- Shaanxi Provincial Land Engineering Construction Group, Key Laboratory of Degraded and Unused Land Consolidation Engineering, Ministry of Natural Resources, Xi'an, 710071, China
- Shaanxi Engineering Research Center of Land Consolidation, Shaanxi Provincial Land Consolidation Engineering Technology Research Center, Xi'an, 710071, China
- Shaanxi Provincial Land Engineering Construction Group, Land Engineering Technology Innovation Center, Ministry of Natural Resources, Xi'an, 710071, China
| | - Luyao Wang
- Shaanxi Provincial Land Engineering Construction Group, Key Laboratory of Degraded and Unused Land Consolidation Engineering, Ministry of Natural Resources, Xi'an, 710071, China
- Shaanxi Engineering Research Center of Land Consolidation, Shaanxi Provincial Land Consolidation Engineering Technology Research Center, Xi'an, 710071, China
- Shaanxi Provincial Land Engineering Construction Group, Land Engineering Technology Innovation Center, Ministry of Natural Resources, Xi'an, 710071, China
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50
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Mayer M, Matthews B, Sandén H, Katzensteiner K, Hagedorn F, Gorfer M, Berger H, Berger TW, Godbold DL, Rewald B. Soil fertility determines whether ectomycorrhizal fungi accelerate or decelerate decomposition in a temperate forest. THE NEW PHYTOLOGIST 2023. [PMID: 37084070 DOI: 10.1111/nph.18930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Accepted: 04/03/2023] [Indexed: 05/03/2023]
Abstract
Ectomycorrhizal (ECM) fungi can both accelerate and decelerate decomposition of organic matter in forest soils, but a mechanistic understanding of this differential influence is limited. Here, we tested how ECM fungi affect decomposition along a natural fertility gradient in a temperate forest of European beech. Trees were girdled to reduce belowground carbon supply to the soil. Girdling shifted soil fungal community composition and decreased hyphal biomass production and soil CO2 efflux, indicating a reduced ECM fungal activity. Girdling also affected decomposition processes, but the effects depended on fertility. Our results indicate that ECM fungi decelerate decomposition under conditions of low fertility while under conditions of high fertility ECM fungi and their host roots have an accelerating effect. We conclude that both acceleration and deceleration of decomposition of organic matter by ECM fungi can occur within a forest, with soil fertility determining the direction and magnitude of these effects. We suggest a positive feedback between fertility, stand productivity and soil carbon and nitrogen dynamics that is mediated to a large extent by ECM fungi.
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Affiliation(s)
- Mathias Mayer
- Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Zürcherstrasse 111, Birmensdorf, 8903, Switzerland
- Forest Ecology, Institute of Terrestrial Ecosystems (ITES), ETH Zurich, Universitätsstrasse 16, Zürich, 8092, Switzerland
- Department of Forest and Soil Sciences, Institute of Forest Ecology, University of Natural Resources and Life Sciences (BOKU), Peter-Jordan Straße 82, Vienna, 1190, Austria
| | - Bradley Matthews
- Department of Forest and Soil Sciences, Institute of Forest Ecology, University of Natural Resources and Life Sciences (BOKU), Peter-Jordan Straße 82, Vienna, 1190, Austria
- Environment Agency Austria, Spittelauer Lände 5, Vienna, 1090, Austria
| | - Hans Sandén
- Department of Forest and Soil Sciences, Institute of Forest Ecology, University of Natural Resources and Life Sciences (BOKU), Peter-Jordan Straße 82, Vienna, 1190, Austria
| | - Klaus Katzensteiner
- Department of Forest and Soil Sciences, Institute of Forest Ecology, University of Natural Resources and Life Sciences (BOKU), Peter-Jordan Straße 82, Vienna, 1190, Austria
| | - Frank Hagedorn
- Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Zürcherstrasse 111, Birmensdorf, 8903, Switzerland
| | - Markus Gorfer
- Center for Health and Bioresources, Austrian Institute of Technology GmbH (AIT), Konrad-Lorenz-Straße 24, Tulln, 3430, Austria
| | - Harald Berger
- Center for Health and Bioresources, Austrian Institute of Technology GmbH (AIT), Konrad-Lorenz-Straße 24, Tulln, 3430, Austria
- Symbiocyte, Konrad-Lorenz-Straße 24, Tulln, 3430, Austria
| | - Torsten W Berger
- Department of Forest and Soil Sciences, Institute of Forest Ecology, University of Natural Resources and Life Sciences (BOKU), Peter-Jordan Straße 82, Vienna, 1190, Austria
| | - Douglas L Godbold
- Department of Forest and Soil Sciences, Institute of Forest Ecology, University of Natural Resources and Life Sciences (BOKU), Peter-Jordan Straße 82, Vienna, 1190, Austria
- Department of Forest Protection and Wildlife Management, Faculty of Forestry and Wood Technology, Mendel University in Brno, Zemědělská 3, Brno, 613 00, Czech Republic
| | - Boris Rewald
- Department of Forest and Soil Sciences, Institute of Forest Ecology, University of Natural Resources and Life Sciences (BOKU), Peter-Jordan Straße 82, Vienna, 1190, Austria
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