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Orzeł Ł, Rutkowska-Zbik D, Świrski M, Stochel G. Have photosynthetic pigments been formulated for chemical stability? A cursory insight into the reactivity of magnesium porphyrinoids. J COORD CHEM 2018. [DOI: 10.1080/00958972.2018.1484915] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Affiliation(s)
- Łukasz Orzeł
- Faculty of Chemistry, Jagiellonian University, Kraków, Poland
| | - Dorota Rutkowska-Zbik
- Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Kraków, Poland
| | - Mateusz Świrski
- Faculty of Chemistry, Jagiellonian University, Kraków, Poland
| | - Grażyna Stochel
- Faculty of Chemistry, Jagiellonian University, Kraków, Poland
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Orzeł Ł, Waś J, Kania A, Susz A, Rutkowska-Zbik D, Staroń J, Witko M, Stochel G, Fiedor L. Factors controlling the reactivity of divalent metal ions towards pheophytin a. J Biol Inorg Chem 2017. [PMID: 28639057 PMCID: PMC5517585 DOI: 10.1007/s00775-017-1472-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
In this study, we evaluate the factors which determine the reactivity of divalent metal ions in the spontaneous formation of metallochlorophylls, using experimental and computational approaches. Kinetic studies were carried out using pheophytin a in reactions with various divalent metal ions combined with non- or weakly-coordinative counter ions in a series of organic solvents. To obtain detailed insights into the solvent effect, the metalations with the whole set of cations were investigated in three solvents and with Zn2+ in seven solvents. The reactions were monitored using electronic absorption spectroscopy and the stopped-flow technique. DFT calculations were employed to shed light on the role of solvent in activating the metal ions towards porphyrinoids. This experimental and computational analysis gives detailed information regarding how the solvent and the counter ion assist/hinder the metalation reaction as activators/inhibitors. The metalation course is dictated to a large extent by the reaction medium, via either the activation or deactivation of the incoming metal ion. The solvent may affect the metalation in several ways, mainly via H-bonding with pyrrolenine nitrogens and the activation/deactivation of the incoming cation. It also seems to affect the activation enthalpy by causing slight conformational changes in the macrocyclic ligand. These new mechanistic insights contribute to a better understanding of the “metal–counterion–solvent” interplay in the metalation of porphyrinoids. In addition, they are highly relevant to the mechanisms of metalation reactions catalyzed by chelatases and explain the differences between the insertion of Mg2+ and other divalent cations.
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Affiliation(s)
- Ł Orzeł
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060, Kraków, Poland.
| | - J Waś
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060, Kraków, Poland
- Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 30-387, Kraków, Poland
| | - A Kania
- Institute of Biology, Pedagogical University of Cracow, Podchorążych 2, 30-084, Kraków, Poland
| | - A Susz
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060, Kraków, Poland
- Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 30-387, Kraków, Poland
| | - D Rutkowska-Zbik
- Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Niezapominajek 8, 30-239, Kraków, Poland
| | - J Staroń
- Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 30-387, Kraków, Poland
- Institute of Pharmacology, Polish Academy of Sciences, Smętna 12, 31-343, Kraków, Poland
| | - M Witko
- Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Niezapominajek 8, 30-239, Kraków, Poland
| | - G Stochel
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060, Kraków, Poland
| | - L Fiedor
- Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 30-387, Kraków, Poland.
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Chen CY, Sun E, Fan D, Taniguchi M, McDowell BE, Yang E, Diers JR, Bocian DF, Holten D, Lindsey JS. Synthesis and Physicochemical Properties of Metallobacteriochlorins. Inorg Chem 2012; 51:9443-64. [DOI: 10.1021/ic301262k] [Citation(s) in RCA: 77] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Chih-Yuan Chen
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204,
United States
| | - Erjun Sun
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204,
United States
| | - Dazhong Fan
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204,
United States
| | - Masahiko Taniguchi
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204,
United States
| | - Brian E. McDowell
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204,
United States
| | - Eunkyung Yang
- Department
of Chemistry, Washington University, St.
Louis, Missouri 63130-4889, United States
| | - James R. Diers
- Department of Chemistry, University of California, Riverside, California 92521-0403, United
States
| | - David F. Bocian
- Department of Chemistry, University of California, Riverside, California 92521-0403, United
States
| | - Dewey Holten
- Department
of Chemistry, Washington University, St.
Louis, Missouri 63130-4889, United States
| | - Jonathan S. Lindsey
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204,
United States
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Saga Y, Miura R, Sadaoka K, Hirai Y. Kinetic Analysis of Demetalation of Synthetic Zinc Cyclic Tetrapyrroles Possessing an Acetyl Group at the 3-Position: Effects of Tetrapyrrole Structures and Peripheral Substitution. J Phys Chem B 2011; 115:11757-62. [DOI: 10.1021/jp206534x] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yoshitaka Saga
- Department of Chemistry, Faculty of Science and Engineering, Kinki University, Higashi-Osaka, Osaka 577-8502, Japan
| | - Ryosuke Miura
- Department of Chemistry, Faculty of Science and Engineering, Kinki University, Higashi-Osaka, Osaka 577-8502, Japan
| | - Kana Sadaoka
- Department of Chemistry, Faculty of Science and Engineering, Kinki University, Higashi-Osaka, Osaka 577-8502, Japan
| | - Yuki Hirai
- Department of Chemistry, Faculty of Science and Engineering, Kinki University, Higashi-Osaka, Osaka 577-8502, Japan
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Hirai Y, Sasaki SI, Tamiaki H, Kashimura S, Saga Y. Substitution Effects in the A- and B-Rings of the Chlorin Macrocycle on Demetalation Properties of Zinc Chlorophyll Derivatives. J Phys Chem B 2011; 115:3240-4. [DOI: 10.1021/jp1117486] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yuki Hirai
- Department of Chemistry, Faculty of Science and Engineering, Kinki University, Higashi-Osaka, Osaka 577-8502, Japan
| | - Shin-ichi Sasaki
- Department of Bioscience and Biotechnology, Faculty of Science and Engineering, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan
- Nagahama Institute of Bio-Science and Technology, Nagahama, Shiga 526-0829, Japan
| | - Hitoshi Tamiaki
- Department of Bioscience and Biotechnology, Faculty of Science and Engineering, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan
| | - Shigenori Kashimura
- Department of Chemistry, Faculty of Science and Engineering, Kinki University, Higashi-Osaka, Osaka 577-8502, Japan
| | - Yoshitaka Saga
- Department of Chemistry, Faculty of Science and Engineering, Kinki University, Higashi-Osaka, Osaka 577-8502, Japan
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Kobayashi M, Ohashi S, Iwamoto K, Shiraiwa Y, Kato Y, Watanabe T. Redox potential of chlorophyll d in vitro. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2007; 1767:596-602. [PMID: 17418087 DOI: 10.1016/j.bbabio.2007.02.015] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2006] [Revised: 02/14/2007] [Accepted: 02/23/2007] [Indexed: 11/20/2022]
Abstract
Chlorophyll (Chl) d is a major chlorophyll in a novel oxygenic prokaryote Acaryochloris marina. Here we first report the redox potential of Chl d in vitro. The oxidation potential of Chl d was +0.88 V vs. SHE in acetonitrile; the value was higher than that of Chl a (+0.81 V) and lower than that of Chl b (+0.94 V). The oxidation potential order, Chl b>Chl d>Chl a, can be explained by inductive effect of substituent groups on the conjugated pi-electron system on the macrocycle. Corresponding pheophytins showed the same order; Phe b (+1.25 V)>Phe d (+1.21 V)>Phe a (+1.14 V), but the values were significantly higher than those of Chls, which are rationalized in terms of an electron density decrease in the pi-system by the replacement of magnesium with more electronegative hydrogen. Consequently, oxidation potential of Chl a was found to be the lowest among Chls and Phes. The results will help us to broaden our views on photosystems in A. marina.
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Affiliation(s)
- Masami Kobayashi
- Institute of Materials Science, University of Tsukuba, Tsukuba 305-8573, Japan.
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Chen M, Cai ZL. Theoretical study on the thermodynamic properties of chlorophyll d-peptides coordinating ligand. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2007; 1767:603-9. [PMID: 17306215 DOI: 10.1016/j.bbabio.2007.01.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2006] [Revised: 12/26/2006] [Accepted: 01/08/2007] [Indexed: 10/23/2022]
Abstract
The chlorophyll d containing cyanobacterium, Acaryochloris marina has provided a model system for the study of chlorophyll replacement in the function of oxygenic photosynthesis. Chlorophyll d replaces most functions of chlorophyll a in Acaryochloris marina. It not only functions as the major light-harvesting pigment, but also acts as an electron transfer cofactor in the primary charge separation reaction in the two photosystems. The Mg-chlorophyll d-peptide coordinating interaction between the amino acid residues and chlorophylls using the latest semi-empirical PM5 method were examined. It is suggested that chlorophyll d possesses similar coordination ligand properties to chlorophyll a, but chlorophyll b possesses different ligand properties. Compared with other studies involving theoretical correlation and our prior experiments, this study suggests that the chlorophyll a-bound proteins will bind chlorophyll d without difficulty when chlorophyll d is available.
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Affiliation(s)
- Min Chen
- School of Biological Sciences, The University of Sydney, NSW 2006, Australia.
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Tomi T, Shibata Y, Ikeda Y, Taniguchi S, Haik C, Mataga N, Shimada K, Itoh S. Energy and electron transfer in the photosynthetic reaction center complex of Acidiphilium rubrum containing Zn-bacteriochlorophyll a studied by femtosecond up-conversion spectroscopy. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2007; 1767:22-30. [PMID: 17169326 DOI: 10.1016/j.bbabio.2006.10.008] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2006] [Revised: 10/11/2006] [Accepted: 10/27/2006] [Indexed: 11/21/2022]
Abstract
A photosynthetic reaction center (RC) complex was isolated from a purple bacterium, Acidiphilium rubrum. The RC contains bacteriochlorophyll a containing Zn as a central metal (Zn-BChl a) and bacteriopheophytin a (BPhe a) but no Mg-BChl a. The absorption peaks of the Zn-BChl a dimer (P(Zn)), the accessory Zn-BChl a (B(Zn)), and BPhe a (H) at 4 K in the RC showed peaks at 875, 792, and 753 nm, respectively. These peaks were shorter than the corresponding peaks in Rhodobacter sphaeroides RC that has Mg-BChl a. The kinetics of fluorescence from P(Zn)(*), measured by fluorescence up-conversion, showed the rise and the major decay with time constants of 0.16 and 3.3 ps, respectively. The former represents the energy transfer from B(Zn)(*) to P(Zn), and the latter, the electron transfer from P(Zn) to H. The angle between the transition dipoles of B(Zn) and P(Zn) was estimated to be 36 degrees based on the fluorescence anisotropy. The time constants and the angle are almost equal to those in the Rb. sphaeroides RC. The high efficiency of A. rubrum RC seems to be enabled by the chemical property of Zn-BChl a and by the L168HE modification of the RC protein that modifies P(Zn).
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Affiliation(s)
- Tetsuo Tomi
- Department of Material Science (Physics), Graduate School of Science, Nagoya University, Furocho, Chikusa, Nagoya 464-8602, Japan
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Drzewiecka-Matuszek A, Skalna A, Karocki A, Stochel G, Fiedor L. Effects of heavy central metal on the ground and excited states of chlorophyll. J Biol Inorg Chem 2005; 10:453-62. [PMID: 15918033 DOI: 10.1007/s00775-005-0652-6] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2004] [Accepted: 04/15/2005] [Indexed: 10/25/2022]
Abstract
Chlorophylls, owing to their adjustable pi-electron system and intense, well-separated electronic transitions, can serve as convenient intrinsic spectroscopic probes of ligand-metal center interactions. They are also interesting for their photosensitizing properties. In order to examine the heavy-atom effects on the chlorophyll triplet state, a key intermediate in chlorophyll-photosensitized reactions, the synthesis of a novel Pt(II)-substituted chlorophyll a was carried out, and the effects of the substitution on steady-state and transient photophysical properties of chlorophyll were studied by absorption and fluorescence spectroscopies, and by laser flash photolysis. The presence of highly electronegative platinum as the central ion increases the energies of the chlorophyll main absorption transitions. As laser flash photolysis experiments show, in air-equilibrated solutions, chlorophyll triplets are efficiently quenched by molecular oxygen. Interestingly, this quenching by oxygen is more effective with metal-containing pigments, in spite of the increased spin-orbit coupling, introduced with the central metals. This points to occurrence of nonspecific interactions of molecular oxygen with metallochlorophylls. The differences in the effects exerted on the pigment triplet by the central metal become distinct after the removal of oxygen. The lifetime of a Pt-chlorophyll triplet remains very short, in the range of only a few microseconds, unlike in the free-base and Mg- and Zn-substituted chlorophylls. Such drastic shortening of the triplet lifetime can be attributed to a large heavy-atom effect, implying that strong interactions must occur between the central Pt(II) ion and the chlorophyll macrocycle, which lead to a more efficient spin-orbit coupling in Pt-chlorophyll than in Pt-porphyrins.
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Ikegami I, Nemoto A, Sakashita K. The Formation of Zn-Chl a in Chlorella Heterotrophically Grown in the Dark with an Excessive Amount of Zn2+. ACTA ACUST UNITED AC 2005; 46:729-35. [PMID: 15753102 DOI: 10.1093/pcp/pci079] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Chlorella, when heterotrophically cultivated in the dark, is able to grow with Zn2+ at 10-40 mM, which is 10 times the concentration lethal to autotrophically grown cells. However, the lag phase is prolonged with increasing concentrations of Zn2+; for example, in this study, 1 d of the control lag phase was prolonged to about 16 d with Zn2+ at 16.7 mM (x2,000 of the control). Once the cells started to grow, the log phase was finished within 4-6 d regardless of Zn concentration, which was almost the same as that of the control. The photosysystem I reaction center chlorophyll, P700, and the far-red fluorescence were detected only after the late log phase of the growth curve, suggesting that chlorophyll-protein complexes can be organized after cell division has ceased. Interestingly, at more than 16.7 mM of Zn2+, Zn-chlorophyll a was accumulated and finally accounted for about 25% of the total chlorophyll a in the late stationary phase. We found that the Zn-chlorophyll a was present in the thylakoid membranes and not in the soluble fractions of the cells. The rather low fluorescence yield at around 680 nm in the stationary phase suggests that Zn-chlorophyll a can transfer its excitation energy to other chlorophylls. Before accumulation of Zn-chlorophyll a, a marked amount of pheophytin a was temporally accumulated, suggesting that Zn-chlorophyll a could be chemically synthesized via pheophytin a.
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Affiliation(s)
- Isamu Ikegami
- Faculty of Pharmaceutical Sciences, Teikyo University, Sagamiko, Kanagawa, 199-0195 Japan.
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Hiraishi A, Shimada K. Aerobic anoxygenic photosynthetic bacteria with zinc-bacteriochlorophyll. J GEN APPL MICROBIOL 2001; 47:161-180. [PMID: 12483616 DOI: 10.2323/jgam.47.161] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Naturally occurring chlorophyllous pigments, which function as the cofactor in the early photochemical reaction of photosynthesis, have been proven beyond question to be magnesium-complexed porphyrin derivatives. Phototrophic organisms that use (bacterio)chlorophylls ([B]Chls) containing metals other than Mg were unknown for a long time. This common knowledge of natural photosynthesis has recently been modified by the striking finding that a novel purple pigment, zinc-chelated-BChl (Zn-BChl) a, is present as the major and functional pigment in species of the genus Acidiphilium. Acidiphilium species are obligately acidophilic chemoorganotrophic bacteria that grow and produce photopigments only under aerobic conditions. Although the mechanism of photosynthesis with Zn-BChl a in Acidiphilium species is similar to that seen in common purple bacteria, some characteristic photosynthetic features of the acidophilic bacteria are also found. The discovery of natural photosynthesis with Zn-BChl has not only provided a new insight into our understanding of bacterial photosynthesis but also raised some interesting questions to be clarified. The major questions are why the acidophilic bacteria have selected Zn-BChl for their photosynthesis and how they synthesize Zn-BChl and express photosynthetic activity with it in their natural habitats. In this article we review the current knowledge of the biology of Acidiphilium as aerobic photosynthetic bacteria with Zn-BChl a and discuss the interesting topics noted above.
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Affiliation(s)
- Akira Hiraishi
- Department of Ecological Engineering, Toyohashi University of Technology, Toyohashi 441-8580, Japan
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