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Machado DDN, Costa EC, Guedes JVC, Barbosa LR, Martínez G, Mayorga SI, Ramos SO, Branco M, Garcia A, Vanegas-Rico JM, Jiménez-Quiroz E, Laudonia S, Novoselsky T, Hodel DR, Arakelian G, Silva H, Perini CR, Valmorbida I, Ugalde GA, Arnemann JA. One maternal lineage leads the expansion of Thaumastocoris peregrinus (Hemiptera: Thaumastocoridae) in the New and Old Worlds. Sci Rep 2020; 10:3487. [PMID: 32103053 PMCID: PMC7044308 DOI: 10.1038/s41598-020-60236-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2019] [Accepted: 02/05/2020] [Indexed: 11/09/2022] Open
Abstract
The bronze bug, Thaumastocoris peregrinus, an Australian native insect, has become a nearly worldwide invasive pest in the last 16 years and has been causing significant damage to eucalypts (Myrtaceae), including Eucalyptus spp. and Corymbia spp. Its rapid expansion leads to new questions about pathways and routes that T. peregrinus used to invade other continents and countries. We used mtDNA to characterize specimens of T. peregrinus collected from 10 countries where this species has become established, including six recently invaded countries: Chile, Israel, Mexico, Paraguay, Portugal, and the United States of America. We then combined our mtDNA data with previous data available from South Africa, Australia, and Europe to construct a world mtDNA network of haplotypes. Haplotype A was the most common present in all specimens of sites sampled in the New World, Europe, and Israel, however from Australia second more frequently. Haplotype D was the most common one from native populations in Australia. Haplotype A differs from the two major haplotypes found in South Africa (D and G), confirming that at least two independent invasions occurred, one from Australia to South Africa, and the other one from Australia to South America (A). In conclusion, Haplotype A has an invasion success over many countries in the World. Additionally, analyzing data from our work and previous reports, it is possible to suggest some invasive routes of T. peregrinus to predict such events and support preventive control measures.
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Affiliation(s)
- Dayanna do N Machado
- Doutoranda pelo Programa de Pós-Graduação em Engenharia Florestal, Universidade Federal de Santa Maria, Santa Maria, Brasil.
- Departamento de Defesa Fitossanitária, Avenida Roraima n. 1000, prédio 42, sala 3223, 97105-900, Santa Maria, Rio Grande do Sul, Brasil.
| | - Ervandil C Costa
- Departamento de Defesa Fitossanitária, Avenida Roraima n. 1000, prédio 42, sala 3223, 97105-900, Santa Maria, Rio Grande do Sul, Brasil
| | - Jerson V C Guedes
- Departamento de Defesa Fitossanitária, Avenida Roraima n. 1000, prédio 42, sala 3223, 97105-900, Santa Maria, Rio Grande do Sul, Brasil
| | - Leonardo R Barbosa
- Empresa Brasileira de Pesquisa Agropecuária - Embrapa Florestas, Colombo, Paraná, 83411-000, Brazil
| | - Gonzalo Martínez
- Instituto Nacional de Investigación Agropecuaria (INIA), Ruta 5 Km 386, Tacuarembó, Uruguay
| | - Sandra I Mayorga
- Servicio Agrícola y Ganadero (SAG), Av. Presidente Bulnes 140, Santiago, Chile
| | - Sergio O Ramos
- Instituto Nacional de Tecnología Agropecuaria (INTA), Estación Yuquerí, Ruta Provincial 22 y vías del Ferrocarril 3200, Concordia, Entre Ríos, Argentina
| | - Manuela Branco
- Centro de Estudos Florestais, Instituto Superior de Agronomia, Universidade de Lisboa, Lisboa, Portugal
| | - André Garcia
- Centro de Estudos Florestais, Instituto Superior de Agronomia, Universidade de Lisboa, Lisboa, Portugal
| | - Juan Manuel Vanegas-Rico
- Laboratorio de Control de Plagas, Unidad de Morfología y Función (UMF), Facultad de Estudios Superiores Iztacala, UNAM. Av. de los barrios #1. Los Reyes Iztacala, Tlalnepantla de Baz, 54090, Mexico
| | - Eduardo Jiménez-Quiroz
- Laboratorio de Análisis y Referencia en Sanidad Forestal, Av. Progreso 3, 04100, Coyoacán, Ciudad de México, Mexico
| | - Stefania Laudonia
- Dipartimento di Agraria, Università degli Studi di Napoli Federico II, Portici, Italy
| | - Tania Novoselsky
- The Steinhardt Museum of Natural History, Israel National Center for Biodiversity Studies, Tel Aviv University, Tel Aviv, 69978, Israel
| | - Donald R Hodel
- University of California, Cooperative Extension, 700 W. Main Street, Alhambra, California, 91801, United States of America
| | - Gevork Arakelian
- Entomologist, Los Angeles County Agricultural Commissioner, 11012 S. Garfield Ave, South Gate, CA, 90280, United States of America
| | - Horacio Silva
- Faculdad de Agronomía Universidad de la República Uruguay, Ruta 3 km 363, 60000, Paysandú, Uruguay
| | - Clérison R Perini
- Departamento de Defesa Fitossanitária, Avenida Roraima n. 1000, prédio 42, sala 3223, 97105-900, Santa Maria, Rio Grande do Sul, Brasil
| | - Ivair Valmorbida
- Department of Entomology, Iowa State University, Ames, Iowa, USA
| | - Gustavo A Ugalde
- Departamento de Defesa Fitossanitária, Avenida Roraima n. 1000, prédio 42, sala 3223, 97105-900, Santa Maria, Rio Grande do Sul, Brasil
| | - Jonas A Arnemann
- Departamento de Defesa Fitossanitária, Avenida Roraima n. 1000, prédio 42, sala 3223, 97105-900, Santa Maria, Rio Grande do Sul, Brasil
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Xiang HT, Wen FQ, Wang GL. The complete nucleotide sequence of the mitochondrial genome of Dorcadia ioffi (Siphonaptera: Vermipsyllidae). MITOCHONDRIAL DNA PART B-RESOURCES 2017; 2:389-390. [PMID: 33473836 PMCID: PMC7800861 DOI: 10.1080/23802359.2017.1347901] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
In this study, the complete mitochondrial genome of Dorcadia ioffi was determined. The mitogenome is 16,785 bp in length and contains 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 1 control region. The nucleotide composition of the D. ioffi mitogenome was A: 40.10%, T: 40.61%, G: 7.74%, C: 11.55%. The A + T content is 80.71%, showing strong AT skew. Phylogenetic analysis indicated that Siphonapteran may have sister relationship with Dipteran.
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Affiliation(s)
- Hai-Tao Xiang
- College of Veterinary Medicine, Gansu Agricultural University, Lanzhou, China
| | - Feng-Qin Wen
- College of Veterinary Medicine, Gansu Agricultural University, Lanzhou, China
| | - Guo-Li Wang
- College of Plant Protection, Gansu Agricultural University, Lanzhou, China
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4
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Tay WT, Walsh TK, Downes S, Anderson C, Jermiin LS, Wong TKF, Piper MC, Chang ES, Macedo IB, Czepak C, Behere GT, Silvie P, Soria MF, Frayssinet M, Gordon KHJ. Mitochondrial DNA and trade data support multiple origins of Helicoverpa armigera (Lepidoptera, Noctuidae) in Brazil. Sci Rep 2017; 7:45302. [PMID: 28350004 PMCID: PMC5368605 DOI: 10.1038/srep45302] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2016] [Accepted: 02/23/2017] [Indexed: 01/31/2023] Open
Abstract
The Old World bollworm Helicoverpa armigera is now established in Brazil but efforts to identify incursion origin(s) and pathway(s) have met with limited success due to the patchiness of available data. Using international agricultural/horticultural commodity trade data and mitochondrial DNA (mtDNA) cytochrome oxidase I (COI) and cytochrome b (Cyt b) gene markers, we inferred the origins and incursion pathways into Brazil. We detected 20 mtDNA haplotypes from six Brazilian states, eight of which were new to our 97 global COI-Cyt b haplotype database. Direct sequence matches indicated five Brazilian haplotypes had Asian, African, and European origins. We identified 45 parsimoniously informative sites and multiple substitutions per site within the concatenated (945 bp) nucleotide dataset, implying that probabilistic phylogenetic analysis methods are needed. High diversity and signatures of uniquely shared haplotypes with diverse localities combined with the trade data suggested multiple incursions and introduction origins in Brazil. Increasing agricultural/horticultural trade activities between the Old and New Worlds represents a significant biosecurity risk factor. Identifying pest origins will enable resistance profiling that reflects countries of origin to be included when developing a resistance management strategy, while identifying incursion pathways will improve biosecurity protocols and risk analysis at biosecurity hotspots including national ports.
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Affiliation(s)
- Wee Tek Tay
- CSIRO, Black Mountain Laboratories, Clunies Ross Street, ACT 2601, Australia
| | - Thomas K. Walsh
- CSIRO, Black Mountain Laboratories, Clunies Ross Street, ACT 2601, Australia
| | - Sharon Downes
- CSIRO, Myall Vale Laboratories, Kamilaroi Highway, Narrabri, NSW 2390, Australia
| | - Craig Anderson
- CSIRO, Black Mountain Laboratories, Clunies Ross Street, ACT 2601, Australia
- Biological and Environmental Sciences, University of Stirling, Stirling, FK9 4LA, UK
| | - Lars S. Jermiin
- CSIRO, Black Mountain Laboratories, Clunies Ross Street, ACT 2601, Australia
- Research School of Biology, Australian National University, Acton, ACT 2601, Australia
| | - Thomas K. F. Wong
- CSIRO, Black Mountain Laboratories, Clunies Ross Street, ACT 2601, Australia
- Research School of Biology, Australian National University, Acton, ACT 2601, Australia
| | - Melissa C. Piper
- CSIRO, Black Mountain Laboratories, Clunies Ross Street, ACT 2601, Australia
| | - Ester Silva Chang
- CSIRO, Black Mountain Laboratories, Clunies Ross Street, ACT 2601, Australia
- Universidade de São Paulo, Instituto de Biociências, São Paulo, SP, 05508-090, Brazil
| | - Isabella Barony Macedo
- CSIRO, Black Mountain Laboratories, Clunies Ross Street, ACT 2601, Australia
- Universidade Federal de Minas Gerais, Faculdade de Farmácia, Belo Horizonte, MG, 31270-901, Brazil
| | - Cecilia Czepak
- Universidade Federal de Goiás, Escola de Agronomia, Goiânia, GO, 75804-020, Brazil
| | - Gajanan T. Behere
- Division of Crop Protection, ICAR Research Complex for North East Hill Region, Umroi Road, Umiam, Meghalaya, 793103, India
| | - Pierre Silvie
- IRD, UMR EGCE, FR-91198 Gif-sur-Yvette Cedex, France
- CIRAD, UPR AÏDA, F-34398 Montpellier Cedex 05, France
| | - Miguel F. Soria
- Bayer S.A., Crop Science Division, São Paulo, SP, 04779-900, Brazil
| | | | - Karl H. J. Gordon
- CSIRO, Black Mountain Laboratories, Clunies Ross Street, ACT 2601, Australia
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Novel molecular approach to define pest species status and tritrophic interactions from historical Bemisia specimens. Sci Rep 2017; 7:429. [PMID: 28348369 PMCID: PMC5428565 DOI: 10.1038/s41598-017-00528-7] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2016] [Accepted: 03/01/2017] [Indexed: 11/23/2022] Open
Abstract
Museum specimens represent valuable genomic resources for understanding host-endosymbiont/parasitoid evolutionary relationships, resolving species complexes and nomenclatural problems. However, museum collections suffer DNA degradation, making them challenging for molecular-based studies. Here, the mitogenomes of a single 1912 Sri Lankan Bemisia emiliae cotype puparium, and of a 1942 Japanese Bemisia puparium are characterised using a Next-Generation Sequencing approach. Whiteflies are small sap-sucking insects including B. tabaci pest species complex. Bemisia emiliae’s draft mitogenome showed a high degree of homology with published B. tabaci mitogenomes, and exhibited 98–100% partial mitochondrial DNA Cytochrome Oxidase I (mtCOI) gene identity with the B. tabaci species known as Asia II-7. The partial mtCOI gene of the Japanese specimen shared 99% sequence identity with the Bemisia ‘JpL’ genetic group. Metagenomic analysis identified bacterial sequences in both Bemisia specimens, while hymenopteran sequences were also identified in the Japanese Bemisia puparium, including complete mtCOI and rRNA genes, and various partial mtDNA genes. At 88–90% mtCOI sequence identity to Aphelinidae wasps, we concluded that the 1942 Bemisia nymph was parasitized by an Eretmocerus parasitoid wasp. Our approach enables the characterisation of genomes and associated metagenomic communities of museum specimens using 1.5 ng gDNA, and to infer historical tritrophic relationships in Bemisia whiteflies.
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