1
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Mu M, Li D, Lin S, Bi H, Liu X, Wang Z, Qian C, Ji J. Insights into the individual and combined effects of Cu(Ⅱ) and Ni(Ⅱ) on anammox: Nitrogen removal performance, enzyme activity and microbial community. CHEMOSPHERE 2024; 365:143308. [PMID: 39265735 DOI: 10.1016/j.chemosphere.2024.143308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2024] [Revised: 09/03/2024] [Accepted: 09/09/2024] [Indexed: 09/14/2024]
Abstract
Anaerobic ammonium oxidation (anammox) is an efficient and economical nitrogen removal process for treating ammonium-rich industrial wastewaters. However, Cu(Ⅱ) and Ni(Ⅱ) present in industrial wastewaters are toxic to anaerobic ammonium-oxidizing bacteria (AnAOB). Unfortunately, the effects of Cu(Ⅱ) and Ni(Ⅱ) on anammox have not been thoroughly investigated, especially when Cu(Ⅱ) and Ni(Ⅱ) coexist. This work comprehensively investigated the individual and combined effects of Cu(Ⅱ) and Ni(Ⅱ) on anammox and revealed the inhibitory mechanisms. With the influent NH4+-N and NO2--N concentration of 230 and 250 mg L-1, the inhibition thresholds on anammox are 2.00 mg L-1 Cu(Ⅱ), 1.00 mg L-1 Ni(Ⅱ) and 1.00 mg L-1 Cu(Ⅱ) + 1.00 mg L-1 Ni(Ⅱ), and higher Cu(Ⅱ) or Ni(Ⅱ) concentrations resulted in sharp deteriorations of nitrogen removal performance. The inhibition of Ni(Ⅱ) on anammox was mainly attributed to the adverse effect on NiR activity, while the inhibition mechanism of Cu(Ⅱ) seemed to be unrelated to the four functional enzymes, but associated with disruption of cellular and organellar membranes. The behavior of extracellular polymeric substances (EPS) contributed to the antagonistic effect between Cu(Ⅱ) and Ni(Ⅱ) on anammox. In addition, the niche of Candidatus Brocadia and Candidatus Jettenia shifted under the Cu(II) and Ni(II) stress, and Candidatus Jettenia displayed greater tolerance to Cu(II) and Ni(II) stress. In conclusion, this research clarified the combined effect and the inhibitory mechanism of multiple heavy metals on anammox, and provide the guidances for anammox process application in treating high-ammonium industrial wastewaters containing heavy metals.
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Affiliation(s)
- Minghao Mu
- Innovation Research Institute, Shandong Hi-speed Group, Jinan, 250001, China
| | - Dengzhi Li
- Key Lab of Marine Environment and Ecology of Ministry of Education, Ocean University of China, Qingdao, 266100, China
| | - Shilin Lin
- Key Lab of Marine Environment and Ecology of Ministry of Education, Ocean University of China, Qingdao, 266100, China
| | - Haisong Bi
- Innovation Research Institute, Shandong Hi-speed Group, Jinan, 250001, China
| | - Xinqiang Liu
- Innovation Research Institute, Shandong Hi-speed Group, Jinan, 250001, China
| | - Zheng Wang
- Innovation Research Institute, Shandong Hi-speed Group, Jinan, 250001, China
| | - Chengduo Qian
- Innovation Research Institute, Shandong Hi-speed Group, Jinan, 250001, China
| | - Junyuan Ji
- Key Lab of Marine Environment and Ecology of Ministry of Education, Ocean University of China, Qingdao, 266100, China.
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2
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White C, Antell E, Schwartz SL, Lawrence JE, Keren R, Zhou L, Yu K, Zhuang W, Alvarez-Cohen L. Synergistic interactions between anammox and dissimilatory nitrate reducing bacteria sustains reactor performance across variable nitrogen loading ratios. Front Microbiol 2023; 14:1243410. [PMID: 37637134 PMCID: PMC10450351 DOI: 10.3389/fmicb.2023.1243410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 07/13/2023] [Indexed: 08/29/2023] Open
Abstract
Anaerobic ammonium oxidizing (anammox) bacteria are utilized for high efficiency nitrogen removal from nitrogen-laden sidestreams in wastewater treatment plants. The anammox bacteria form a variety of competitive and mutualistic interactions with heterotrophic bacteria that often employ denitrification or dissimilatory nitrate reduction to ammonium (DNRA) for energy generation. These interactions can be heavily influenced by the influent ratio of ammonium to nitrite, NH4+:NO2-, where deviations from the widely acknowledged stoichiometric ratio (1:1.32) have been demonstrated to have deleterious effects on anammox efficiency. Thus, it is important to understand how variable NH4+:NO2- ratios impact the microbial ecology of anammox reactors. We observed the response of the microbial community in a lab scale anammox membrane bioreactor (MBR) to changes in the influent NH4+:NO2- ratio using both 16S rRNA gene and shotgun metagenomic sequencing. Ammonium removal efficiency decreased from 99.77 ± 0.04% when the ratio was 1:1.32 (prior to day 89) to 90.85 ± 0.29% when the ratio was decreased to 1:1.1 (day 89-202) and 90.14 ± 0.09% when the ratio was changed to 1:1.13 (day 169-200). Over this same timespan, the overall nitrogen removal efficiency (NRE) remained relatively unchanged (85.26 ± 0.01% from day 0-89, compared to 85.49 ± 0.01% from day 89-169, and 83.04 ± 0.01% from day 169-200). When the ratio was slightly increased to 1:1.17-1:1.2 (day 202-253), the ammonium removal efficiency increased to 97.28 ± 0.45% and the NRE increased to 88.21 ± 0.01%. Analysis of 16 S rRNA gene sequences demonstrated increased relative abundance of taxa belonging to Bacteroidetes, Chloroflexi, and Ignavibacteriae over the course of the experiment. The relative abundance of Planctomycetes, the phylum to which anammox bacteria belong, decreased from 77.19% at the beginning of the experiment to 12.24% by the end of the experiment. Analysis of metagenome assembled genomes (MAGs) indicated increased abundance of bacteria with nrfAH genes used for DNRA after the introduction of lower influent NH4+:NO2- ratios. The high relative abundance of DNRA bacteria coinciding with sustained bioreactor performance indicates a mutualistic relationship between the anammox and DNRA bacteria. Understanding these interactions could support more robust bioreactor operation at variable nitrogen loading ratios.
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Affiliation(s)
- Christian White
- Department of Civil & Environmental Engineering, University of California, Berkeley, Berkeley, CA, United States
| | - Edmund Antell
- Department of Civil & Environmental Engineering, University of California, Berkeley, Berkeley, CA, United States
| | - Sarah L. Schwartz
- Department of Civil & Environmental Engineering, University of California, Berkeley, Berkeley, CA, United States
| | | | - Ray Keren
- Department of Civil & Environmental Engineering, University of California, Berkeley, Berkeley, CA, United States
| | - Lijie Zhou
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, China
| | - Ke Yu
- School of Environment and Energy, Shenzhen Graduate School, Peking University, Shenzhen, China
| | - Weiqin Zhuang
- Department of Civil & Environmental Engineering, University of Auckland, Auckland, New Zealand
| | - Lisa Alvarez-Cohen
- Department of Civil & Environmental Engineering, University of California, Berkeley, Berkeley, CA, United States
- Earth and Environmental Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
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3
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Liu Y, Han Y, Guo T, Guo J, Hou Y, Song Y, Li H, Zhang X. Insights to Fe(II) on the fate of humic acid and humic acid Fe complex with biogeobattery effect in simultaneous partial nitritation, anammox and denitrification (SNAD) system. BIORESOURCE TECHNOLOGY 2023; 374:128782. [PMID: 36828222 DOI: 10.1016/j.biortech.2023.128782] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 02/15/2023] [Accepted: 02/19/2023] [Indexed: 06/18/2023]
Abstract
The role of Fe(II) on the humic acid (HA) transformation and the effects of humic acid Fe (HA-Fe) on simultaneous partial nitrification, anammox and denitrification (SNAD) system were investigated. After adding Fe(II), the HA content decreased and the HA inhibition on the SNAD system was released. Results showed that Fe(II) and HA formed the lower water-soluble HA-Fe, promoting the HA removal. HA-Fe with stronger electron transfer capacity constituted the interface with microorganisms to forming the biogeobattery effect. This accelerated the microbial electron transfer, as well as improved the key enzymes and ATP, indicating that HA-Fe stimulated the microbial activity of the SNAD system. Microbial community and quorum sensing analysis further demonstrated that HA-Fe enhanced the mutual symbiosis between electroactive and nitrogen removal bacteria, to ensure the stability of the SNAD system. The study provided references for efficient HA removal and revealed the biogeobattery effect of HA-Fe in the SNAD system.
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Affiliation(s)
- Yinuo Liu
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China
| | - Yi Han
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China
| | - Tingting Guo
- School of Civil Engineering and Architecture, Taizhou University, Taizhou 318000, Zhejiang, China
| | - Jianbo Guo
- School of Civil Engineering and Architecture, Taizhou University, Taizhou 318000, Zhejiang, China.
| | - Yanan Hou
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China
| | - Yuanyuan Song
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China
| | - Haibo Li
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China
| | - Xu Zhang
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China
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4
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Lu Y, Natarajan G, Nguyen TQN, Thi SS, Arumugam K, Seviour T, Williams RBH, Wuertz S, Law Y. Controlling anammox speciation and biofilm attachment strategy using N-biotransformation intermediates and organic carbon levels. Sci Rep 2022; 12:21720. [PMID: 36522527 PMCID: PMC9755228 DOI: 10.1038/s41598-022-26069-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Accepted: 12/08/2022] [Indexed: 12/23/2022] Open
Abstract
Conventional nitrogen removal in wastewater treatment requires a high oxygen and energy input. Anaerobic ammonium oxidation (anammox), the single-step conversion of ammonium and nitrite to nitrogen gas, is a more energy and cost effective alternative applied extensively to sidestream wastewater treatment. It would also be a mainstream treatment option if species diversity and physiology were better understood. Anammox bacteria were enriched up to 80%, 90% and 50% relative abundance, from a single inoculum, under standard enrichment conditions with either stepwise-nitrite and ammonia concentration increases (R1), nitric oxide supplementation (R2), or complex organic carbon from mainstream wastewater (R3), respectively. Candidatus Brocadia caroliniensis predominated in all reactors, but a shift towards Ca. Brocadia sinica occurred at ammonium and nitrite concentrations > 270 mg NH4-N L-1 and 340 mg NO2-N L-1 respectively. With NO present, heterotrophic growth was inhibited, and Ca. Jettenia coexisted with Ca. B. caroliniensis before diminishing as nitrite increased to 160 mg NO2-N L-1. Organic carbon supplementation led to the emergence of heterotrophic communities that coevolved with Ca. B. caroliniensis. Ca. B. caroliniensis and Ca. Jettenia preferentially formed biofilms on surfaces, whereas Ca. Brocadia sinica formed granules in suspension. Our results indicate that multiple anammox bacteria species co-exist and occupy sub-niches in anammox reactors, and that the dominant population can be reversibly shifted by, for example, changing nitrogen load (i.e. high nitrite concentration favors Ca. Brocadia caroliniensis). Speciation has implications for wastewater process design, where the optimum cell immobilization strategy (i.e. carriers vs granules) depends on which species dominates.
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Affiliation(s)
- Yang Lu
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore ,grid.1003.20000 0000 9320 7537Present Address: The Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD 4072 Australia
| | - Gayathri Natarajan
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore
| | - Thi Quynh Ngoc Nguyen
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore ,grid.185448.40000 0004 0637 0221Present Address: Agency for Science, Technology and Research, Singapore, 138632 Singapore
| | - Sara Swa Thi
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore
| | - Krithika Arumugam
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore
| | - Thomas Seviour
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore ,grid.7048.b0000 0001 1956 2722Centre for Water Technology (WATEC) & Department of Biological and Chemical Engineering, Aarhus University, Universitetsbyen 36, 8000 Aarhus C, Denmark
| | - Rohan B. H. Williams
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, National University of Singapore, Singapore, 119077 Singapore
| | - Stefan Wuertz
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore ,grid.59025.3b0000 0001 2224 0361School of Civil and Environmental Engineering, Nanyang Technological University, Singapore, 639798 Singapore
| | - Yingyu Law
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore
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5
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Yang Y, Lu Z, Azari M, Kartal B, Du H, Cai M, Herbold CW, Ding X, Denecke M, Li X, Li M, Gu JD. Discovery of a new genus of anaerobic ammonium oxidizing bacteria with a mechanism for oxygen tolerance. WATER RESEARCH 2022; 226:119165. [PMID: 36257158 DOI: 10.1016/j.watres.2022.119165] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2022] [Revised: 09/15/2022] [Accepted: 09/23/2022] [Indexed: 06/16/2023]
Abstract
In the past 20 years, there has been a major stride in understanding the core mechanism of anaerobic ammonium-oxidizing (anammox) bacteria, but there are still several discussion points on their survival strategies. Here, we discovered a new genus of anammox bacteria in a full-scale wastewater-treating biofilm system, tentatively named "Candidatus Loosdrechtia aerotolerans". Next to genes of all core anammox metabolisms, it encoded and transcribed genes involved in the dissimilatory nitrate reduction to ammonium (DNRA), which coupled to oxidation of small organic acids, could be used to replenish ammonium and sustain their metabolism. Surprisingly, it uniquely harbored a new ferredoxin-dependent nitrate reductase, which has not yet been found in any other anammox genome and might confer a selective advantage to it in nitrate assimilation. Similar to many other microorganisms, superoxide dismutase and catalase related to oxidative stress resistance were encoded and transcribed by "Ca. Loosdrechtia aerotolerans". Interestingly, bilirubin oxidase (BOD), likely involved in oxygen resistance of anammox bacteria under fluctuating oxygen concentrations, was identified in "Ca. Loosdrechtia aerotolerans" and four Ca. Brocadia genomes, and its activity was demonstrated using purified heterologously expressed proteins. A following survey of oxygen-active proteins in anammox bacteria revealed the presence of other previously undetected oxygen defense systems. The novel cbb3-type cytochrome c oxidase and bifunctional catalase-peroxidase may confer a selective advantage to Ca. Kuenenia and Ca. Scalindua that face frequent changes in oxygen concentrations. The discovery of this new genus significantly broadens our understanding of the ecophysiology of anammox bacteria. Furthermore, the diverse oxygen tolerance strategies employed by distinct anammox bacteria advance our understanding of their niche adaptability and provide valuable insight for the operation of anammox-based wastewater treatment systems.
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Affiliation(s)
- Yuchun Yang
- State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-Sen University, Guangzhou 510275, People's Republic of China
| | - Zhongyi Lu
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen 518060, People's Republic of China; Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen 518060, People's Republic of China
| | - Mohammad Azari
- Department of Aquatic Environmental Engineering, Institute for Water and River Basin Management, Karlsruhe Institute of Technology (KIT), Gotthard-Franz-Str. 3, Karlsruhe 76131, Germany
| | - Boran Kartal
- Microbial Physiology Group, Max Planck Institute for Marine Microbiology, Celsiusstraße 1, Bremen 28359, Germany
| | - Huan Du
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen 518060, People's Republic of China
| | - Mingwei Cai
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen 518060, People's Republic of China
| | - Craig W Herbold
- Centre for Microbiology and Environmental Systems Science, Division of Microbial Ecology, University of Vienna, Althanstrasse 14, Vienna 1090, Austria
| | - Xinghua Ding
- Laboratory of Environmental Microbiology and Toxicology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, People's Republic of China
| | - Martin Denecke
- Department of Urban Water- and Waste Management, University of Duisburg-Essen, Universitätsstraße 15, Essen 45141, Germany
| | - Xiaoyan Li
- Department of Civil Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong, People's Republic of China
| | - Meng Li
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen 518060, People's Republic of China
| | - Ji-Dong Gu
- Environmental Science and Engineering Research Group, Guangdong Technion - Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong 515063, People's Republic of China; Southern Laboratory of Ocean Science and Engineering (Guangdong, Zhuhai), Zhuhai, Guangdong 519082, People's Republic of China; Guangdong Provincial Key Laboratory of Materials and Technologies for Energy Conversion, Guangdong Technion - Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong 515063, People's Republic of China.
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6
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Bryson SJ, Hunt KA, Stahl DA, Winkler MKH. Metagenomic Insights Into Competition Between Denitrification and Dissimilatory Nitrate Reduction to Ammonia Within One-Stage and Two-Stage Partial-Nitritation Anammox Bioreactor Configurations. Front Microbiol 2022; 13:825104. [PMID: 35547121 PMCID: PMC9083452 DOI: 10.3389/fmicb.2022.825104] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 03/30/2022] [Indexed: 11/13/2022] Open
Abstract
Anaerobic ammonia oxidizing bacteria (Anammox) are implemented in high-efficiency wastewater treatment systems operated in two general configurations; one-stage systems combine aerobic ammonia oxidizing bacteria (AOB) and Anammox within a single aerated reactor, whereas two-stage configurations separate these processes into discrete tanks. Within both configurations heterotrophic populations that perform denitrification or dissimilatory nitrate reduction to ammonia (DNRA) compete for carbon and nitrate or nitrite and can impact reactor performance because DNRA retains nitrogen in the system. Therefore, it is important to understand how selective pressures imposed by one-stage and two-stage reactor configurations impact the microbial community structure and associated nitrogen transforming functions. We performed 16S rRNA gene and metagenomic sequencing on different biomass fractions (granules, flocs, and suspended biomass) sampled from two facilities treating sludge dewatering centrate: a one-stage treatment facility (Chambers Creek, Tacoma, WA) and a two-stage system (Rotterdam, Netherlands). Similar microbial populations were identified across the different samples, but relative abundances differed between reactor configurations and biomass sources. Analysis of metagenome assembled genomes (MAGs) indicated different lifestyles for abundant heterotrophic populations. Acidobacteria, Bacteroidetes, and Chloroflexi MAGs had varying capacity for DNRA and denitrification. Acidobacteria MAGs possessed high numbers of glycosyl hydrolases and glycosyl transferases indicating a role in biomass degradation. Ignavibacteria and Phycosphaerae MAGs contributed to the greater relative abundance of DNRA associated nrf genes in the two-stage granules and contained genomic features suggesting a preference for an anoxic or microoxic niche. In the one-stage granules a MAG assigned to Burkholderiales accounted for much of the abundant denitrification genes and had genomic features, including the potential for autotrophic denitrification using reduced sulfur, that indicate an ability to adapt its physiology to varying redox conditions. Overall, the competition for carbon substrates between denitrifying and DNRA performing heterotrophs may be impacted by configuration specific selective pressures. In one-stage systems oxygen availability in the bulk liquid and the oxygen gradient within granules would provide a greater niche space for heterotrophic populations capable of utilizing both oxygen and nitrate or nitrite as terminal electron acceptors, compared to two-stage systems where a homogeneous anoxic environment would favor heterotrophic populations primarily adapted to anaerobic metabolism.
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Affiliation(s)
- Samuel J Bryson
- Department of Civil and Environmental Engineering, University of Washington, Seattle, WA, United States
| | - Kristopher A Hunt
- Department of Civil and Environmental Engineering, University of Washington, Seattle, WA, United States
| | - David A Stahl
- Department of Civil and Environmental Engineering, University of Washington, Seattle, WA, United States
| | - Mari-Karoliina H Winkler
- Department of Civil and Environmental Engineering, University of Washington, Seattle, WA, United States
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7
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Liu Y, Han Y, Guo J, Zhang J, Hou Y, Song Y, Lu C, Li H, Zhong Y. New insights of simultaneous partial nitritation, anammox and denitrification (SNAD) system to Zn(II) exposure: Focus on affecting the regulation of quorum sensing on extracellular electron transfer and microbial metabolism. BIORESOURCE TECHNOLOGY 2022; 346:126602. [PMID: 34953995 DOI: 10.1016/j.biortech.2021.126602] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 12/13/2021] [Accepted: 12/17/2021] [Indexed: 06/14/2023]
Abstract
Here, the toxicity responses mechanism of the simultaneous partial nitritation, anammox and denitrification (SNAD) system to Zn(II) exposure were explored with emphasis on the repressed quorum sensing (QS) regulation on extracellular electron transfer and microbial metabolism. Results showed that Zn(II) accumulated in cells and induced oxidative stress, which led to microbial structure destruction. The increased electron transfer impedance and reduced redox substances (flavin/Cytochrome c) implied that Zn(II) affected electron transfer. The decreased ATP level, dehydrogenase and nitrogen related enzymatic activities showed Zn(II) affected organic matter and nitrogen metabolism. Furthermore, combined with Pearson network analysis, Zn(II) exposure disturbed the QS to decrease Acyl Homoserine Lactones (AHLs) secretion responsible for regulating extracellular electron transfer and microbial metabolism, thereby disturbing the performance of the SNAD system. This study provided new insights into the toxicity responses mechanism of the SNAD system to HM exposure.
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Affiliation(s)
- Yinuo Liu
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China
| | - Yi Han
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China.
| | - Jianbo Guo
- School of Civil Engineering and Architecture, Taizhou University, Taizhou 318000, Zhejiang, China; School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China.
| | - Jianbing Zhang
- Tianjin Municipal Engineering Design & Research Institute Co.,Ltd., Tianjin 300051, China
| | - Yanan Hou
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China
| | - Yuanyuan Song
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China
| | - Caicai Lu
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China
| | - Haibo Li
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China
| | - Yuan Zhong
- School of Environmental and Municipal Engineering, Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China
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8
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Jia F, Peng Y, Li J, Li X, Yao H. Metagenomic prediction analysis of microbial aggregation in anammox-dominated community. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2021; 93:2549-2558. [PMID: 33539607 DOI: 10.1002/wer.1529] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 01/24/2021] [Accepted: 01/27/2021] [Indexed: 06/12/2023]
Abstract
Aggregation of anammox bacteria is essential to maintain high biomass concentrations and prevent the loss of biomass in anammox processes. PICRUSt (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) was used in this study to predict the metagenomic potentials and characterize the microbial community structure and functional features in anammox aggregates (e.g., sludge flocs, biofilms, and granules). The results showed that Candidatus Brocadia was the most dominant anammox genera in all aggregates (38.0% in flocs, 69.4% in biofilm, and 52.0% in granules) and the functional gene involved in the anammox process was detected in the highest amount in biofilms, followed by granules and flocs. Furthermore, the anammox microbial aggregation pathway was explored that anammox bacteria have strong motility and high capability for early attachment. Anammox bacteria could produce large amounts of EPS (extracellular polymeric substances) regulated by quinolone and transport to extracellular environment through type II secretion system. The strong ability of c-di-GMP (bis-(3'-5')-cyclic dimeric guanosine monophosphate) synthesis enabled a stable architectural structure of aggregation. This study elucidated the aggregation mechanism of anammox microorganisms at the genetic level to enhance the stability of anammox processes. PRACTITIONER POINTS: Candidatus Brocadia was the most dominant anammox genera in aggregates. Anammox bacteria have strong motility and high attachment capability. Anammox bacteria possess strong EPS synthesis regulated by quinolone. c-di-GMP synthesis enables a stable structure of aggregation.
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Affiliation(s)
- Fangxu Jia
- Beijing International Scientific and Technological Cooperation Base of Water Pollution Control Techniques for Antibiotics and Resistance Genes, School of Civil Engineering, Beijing Jiaotong University, Beijing, China
| | - Yongzhen Peng
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Engineering Research Center of Beijing, Key Laboratory of Beijing for Water Quality Science and Water Environment Recovery Engineering, Beijing University of Technology, Beijing, China
| | - Jianwei Li
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Engineering Research Center of Beijing, Key Laboratory of Beijing for Water Quality Science and Water Environment Recovery Engineering, Beijing University of Technology, Beijing, China
| | - Xiyao Li
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Engineering Research Center of Beijing, Key Laboratory of Beijing for Water Quality Science and Water Environment Recovery Engineering, Beijing University of Technology, Beijing, China
| | - Hong Yao
- Beijing International Scientific and Technological Cooperation Base of Water Pollution Control Techniques for Antibiotics and Resistance Genes, School of Civil Engineering, Beijing Jiaotong University, Beijing, China
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9
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Yang Y, Azari M, Herbold CW, Li M, Chen H, Ding X, Denecke M, Gu JD. Activities and metabolic versatility of distinct anammox bacteria in a full-scale wastewater treatment system. WATER RESEARCH 2021; 206:117763. [PMID: 34700143 DOI: 10.1016/j.watres.2021.117763] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2021] [Revised: 09/16/2021] [Accepted: 10/10/2021] [Indexed: 05/05/2023]
Abstract
Anaerobic ammonium oxidation (anammox) is a key N2-producing process in the global nitrogen cycle. Major progress in understanding the core mechanism of anammox bacteria has been made, but our knowledge of the survival strategies of anammox bacteria in complex ecosystems, such as full-scale wastewater treatment plants (WWTPs), remains limited. Here, by combining metagenomics with in situ metatranscriptomics, complex anammox-driven nitrogen cycles in an anoxic tank and a granular activated carbon (GAC) biofilm module of a full-scale WWTP treating landfill leachate were constructed. Four distinct anammox metagenome-assembled genomes (MAGs), representing a new genus named Ca. Loosdrechtii, a new species in Ca. Kuenenia, a new species in Ca. Brocadia, and a new strain in "Ca. Kuenenia stuttgartiensis", were simultaneously retrieved from the GAC biofilm. Metabolic reconstruction revealed that all anammox organisms highly expressed the core metabolic enzymes and showed a high metabolic versatility. Pathways for dissimilatory nitrate reduction to ammonium (DNRA) coupled to volatile fatty acids (VFAs) oxidation likely assist anammox bacteria to survive unfavorable conditions and facilitate switches between lifestyles in oxygen fluctuating environments. The new Ca. Kuenenia species dominated the anammox community of the GAC biofilm, specifically may be enhanced by the uniquely encoded flexible ammonium and iron acquisition strategies. The new Ca. Brocadia species likely has an extensive niche distribution that is simultaneously established in the anoxic tank and the GAC biofilm, the two distinct niches. The highly diverse and impressive metabolic versatility of anammox bacteria revealed in this study advance our understanding of the survival and application of anammox bacteria in the full-scale wastewater treatment system.
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Affiliation(s)
- Yuchun Yang
- State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen University, Guangzhou, Guangdong 510275, People's Republic of China
| | - Mohammad Azari
- Department of Urban Water- and Waste Management, University of Duisburg-Essen, Universitätsstraße 15, Essen 45141, Germany; Department of Aquatic Environmental Engineering, Institute for Water and River Basin Management, Karlsruhe Institute of Technology (KIT), Gotthard-Franz-Str. 3, Karlsruhe 76131, Germany
| | - Craig W Herbold
- Center for Microbiology and Environmental Systems Science, Division of Microbial Ecology, University of Vienna, Althanstrasse 14, Vienna 1090, Austria
| | - Meng Li
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong 518060, People's Republic of China
| | - Huaihai Chen
- State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen University, Guangzhou, Guangdong 510275, People's Republic of China
| | - Xinghua Ding
- Laboratory of Environmental Microbiology and Toxicology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, People's Republic of China
| | - Martin Denecke
- Department of Urban Water- and Waste Management, University of Duisburg-Essen, Universitätsstraße 15, Essen 45141, Germany
| | - Ji-Dong Gu
- Environmental Science and Engineering Research Group, Guangdong Technion Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong 515063, The People's Republic of China; Southern Laboratory of Ocean Science and Engineering (Guangdong, Zhuhai), Zhuhai, Guangdong, The People's Republic of China.
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10
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Zhang S, Zhang Z, Xia S, Ding N, Liao X, Yang R, Chen M, Chen S. The potential contributions to organic carbon utilization in a stable acetate-fed Anammox process under low nitrogen-loading rates. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 784:147150. [PMID: 33894611 DOI: 10.1016/j.scitotenv.2021.147150] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Revised: 04/11/2021] [Accepted: 04/11/2021] [Indexed: 06/12/2023]
Abstract
The unique ability of Anammox bacteria to metabolize short-chain fatty acids have been demonstrated. However, the potential contributions of active Anammox species to carbon utilization in a mixotrophic Anammox-denitrification process are less well understood. In this study, we combined genome-resolved metagenomics and DNA stable isotope probing (DNA-SIP) to characterize an Anammox process fed with acetate under COD/TN ratios of around 0.30-0.40 and low nitrogen-loading rates. A draft genome of "Candidatus Jettenia caeni" and a novel species that was phylogenetically close to "Candidatus Brocadia sinica" were recovered. Essential genes encoding the key enzymes for acetate metabolism and dissimilatory nitrate reduction to ammonium were identified in the two Anammox draft genomes. The DNA-SIP revealed that Ignavibacterium, "Candidatus Jettenia caeni," Thauera, Denitratisoma, and Calorithrix predominantly contributed to organic carbon utilization in the acetate-fed Anammox process. In particular, the "Candidatus Jettenia caeni" accounted for a higher proportion of 13C-DNA communities than "Candidatus Brocadia sinica." This result well confirmed the theory of maintenance energy between the interspecies competition of the two Anammox species under low nitrogen-loading rates. Our study revealed its potential important role of the Anammox genus "Candidatus Jettenia" in the treatment of wastewater containing low organic matter and ammonia.
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Affiliation(s)
- Shici Zhang
- Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; School of Chemical and Environmental Engineering, Jianghan University, Wuhan 430056, China; School of Resources and Environmental Engineering, Wuhan University of Technology, Wuhan 430070, China
| | - Zhaoji Zhang
- Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.
| | - Shibin Xia
- School of Resources and Environmental Engineering, Wuhan University of Technology, Wuhan 430070, China
| | - Ningning Ding
- Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Xinrui Liao
- School of Environmental Science and Engineering, Ocean University of China, Qingdao 266000, China
| | - Ruili Yang
- Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Minquan Chen
- Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Shaohua Chen
- Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
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11
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Yin X, Rahaman MH, Liu W, Mąkinia J, Zhai J. Comparison of nitrogen and VFA removal pathways in autotrophic and organotrophic anammox reactors. ENVIRONMENTAL RESEARCH 2021; 197:111065. [PMID: 33831412 DOI: 10.1016/j.envres.2021.111065] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 02/20/2021] [Accepted: 03/18/2021] [Indexed: 06/12/2023]
Abstract
Organotrophic anammox is a promising process for treating both nitrogen and organic containing wastewater than that of the traditional autotrophic anammox for sole nitrogen removal. However pathways of nitrogen removal particularly at metagenomic level in both processes are still unknown. Here we report, metabolic pathways of nitrogen removal in two lab-scale sequencing batch reactors (SBR), one autotrophic and another organotrophic (TOC/TN = 0.1) anammox bacteria incubated over 220 days. Both reactors showed satisfactory nitrogen removal with 840.31 mg N/L.d and 786.81 mg N/L.d for autotrophic and organotrophic anammox reactors respectively. Four anammox species namely Candidatus B. fulgida, B. sinica, J. caeni and Candidatus K. stuttgartiensis were identified in both reactors. The Candidatus K. stuttgartiensis (4%) was dominant in autotrophic reactor whereas Candidatus J. caeni (10%) in the organotrophic reactor. The supply of organic promoted the growth of anammox bacteria more than three times higher than that of the autotrophic anammox reactor. The functional genes related to the DNRA pathway was obtained in all anammox species except for Candidatus K. stuttgartiensis. The co-existence of other DNRA (Armatimonadetes and Thauera) and partial denitrifying bacteria (Chloroflexi) was also found in both reactors. Moreover, functional genes related to acetate metabolism by acetyl-CoA way were obtained in all anammox bacteria except Candidatus B. fulgida which showed alternative ackA/Pac-t pathways in organic anammox reactor. Overall current results suggest that the anammox, DNRA and partial denitrification were the key nitrogen transformation pathways, particularly in organotrophic anammox reactor. Our findings will improve understanding of the practical application of organotrophic anammox for wider wastewater treatment.
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Affiliation(s)
- Xuejiao Yin
- Chongqing University, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Chongqing, 400045, China
| | - Md Hasibur Rahaman
- Chongqing University, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Chongqing, 400045, China; Department of Environmental Science and Technology, Jashore University of Science and Technology, Jashore, 7408, Bangladesh
| | - Wenbo Liu
- Chongqing University, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Chongqing, 400045, China
| | - Jacek Mąkinia
- Department of Sanitary Engineering, Gdańsk University of Technology, 80-233, Gdansk, Poland
| | - Jun Zhai
- Chongqing University, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Chongqing, 400045, China.
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12
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Wu G, Zhang T, Gu M, Chen Z, Yin Q. Review of characteristics of anammox bacteria and strategies for anammox start-up for sustainable wastewater resource management. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2020; 82:1742-1757. [PMID: 33201840 DOI: 10.2166/wst.2020.443] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Wastewater management has experienced different stages, including pollutant removal, resource recovery, and water nexus. Within these stages, anaerobic ammonia oxidation-based biotechnology can be incorporated for nitrogen removal, which can help achieve sustainable wastewater management, such as reclamation and ecologization of wastewater. Here, the physiology, metabolism, reaction kinetics and microbial interactions of anammox bacteria are discussed, and strategies to start-up the anammox system are presented. Anammox bacteria are slow growers with a high doubling time and a low reaction rate. Although most anammox bacteria grow autotrophically, some types can grow mixotrophically. The reaction stoichiometric coefficients can be affected by loading rates and other biological reactions. Microbial interactions also contribute to enhanced biological nitrogen removal and promote activities of anammox bacteria. The start-up of the anammox process is the key aspect for its practical application, which can be realized through seed selection, system stimulation, and biomass concentration enhancement.
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Affiliation(s)
- Guangxue Wu
- Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, Guangdong, China E-mail:
| | - Tianqi Zhang
- Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, Guangdong, China E-mail:
| | - Mengqi Gu
- Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, Guangdong, China E-mail:
| | - Zhuo Chen
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Qidong Yin
- Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, Guangdong, China E-mail:
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13
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Yang Y, Li M, Li H, Li XY, Lin JG, Denecke M, Gu JD. Specific and effective detection of anammox bacteria using PCR primers targeting the 16S rRNA gene and functional genes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 734:139387. [PMID: 32460079 DOI: 10.1016/j.scitotenv.2020.139387] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Revised: 05/09/2020] [Accepted: 05/10/2020] [Indexed: 05/05/2023]
Abstract
Anaerobic ammonium-oxidizing (anammox) bacteria play an important role in the nitrogen cycle by coupling ammonium and nitrite to produce dinitrogen gas (N2). Polymerase chain reaction (PCR) is a fast, simple, and sensitive method that is widely used to assess the diversity, abundance, and activity of the slow-growing bacteria. In this review, we summarize and evaluate the wide variety of PCR primers targeting the 16S rRNA gene and functional genes (hzo, nir, and hzs) of anammox bacteria for their effectiveness and efficiencies in detecting this group of bacteria in different sample types. Furthermore, the efficiencies of different universal high-throughput sequencing 16S rRNA gene primers in anammox bacteria investigations were also evaluated to provide a reference for primer selection. Based on our in silico evaluation results, none of the 16S rRNA gene primers could recover all of the known anammox bacteria, but multiple hzo and hzs gene primers could accomplish this task. However, uncertain copies (1-3 copies) of hzo genes were identified in the genomes, and the hydrazine oxidation reaction catalyzed by hydrazine oxidoreductases (HZOs) can also be catalyzed by other hydroxylamine oxidoreductases (HAOs) in anammox bacteria, which can potentially result in large deviations in hzo-based qPCR and RT-qPCR analyses and results. Therefore, the use of optimal primers targeting unique hzs genes are recommended, although the efficiencies of these newly designed primers need further verification in practical applications. This article provides comprehensive information for the effective and specific detection of anammox bacteria using specific primers targeting the 16S rRNA gene and functional genes and serves as a basis for future high-quality primer design.
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Affiliation(s)
- Yuchun Yang
- Laboratory of Environmental Microbiology and Toxicology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, Hong Kong, People's Republic of China; Environmental Engineering, Guangdong Technion Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong 515063, People's Republic of China
| | - Meng Li
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen 518060, People's Republic of China.
| | - Hui Li
- School of Resource and Environmental Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, People's Republic of China
| | - Xiao-Yan Li
- Department of Civil and Environmental Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong, People's Republic of China
| | - Jih-Gaw Lin
- Institute of Environmental Engineering, National Chiao Tung University, 1001 University Road, Hsinchu City 30010, Taiwan
| | - Martin Denecke
- Department of Urban Water- and Waste Management, University of Duisburg-Essen, Universitätsstraße 15, 45141 Essen, Germany
| | - Ji-Dong Gu
- School of Food and Biotechnology, Guangdong Industry Polytechnic, Guangzhou, Guangdong 510300, People's Republic of China; Environmental Engineering, Guangdong Technion Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong 515063, People's Republic of China.
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14
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Li N, Wan Y, Wang X. Nutrient conversion and recovery from wastewater using electroactive bacteria. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 706:135690. [PMID: 31784166 DOI: 10.1016/j.scitotenv.2019.135690] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Revised: 11/20/2019] [Accepted: 11/20/2019] [Indexed: 06/10/2023]
Abstract
Wastewater is widely recognized as a sink of active nitrogen and phosphorus, and the recovery of both nutrients as fertilizers is widely studied in recent years. Electroactive bacteria increasingly attract attentions in this area because they are able to produce an electric field in microbial electrochemical systems to concentrate ammonium and phosphate for recovery. Importantly, these unique bacteria are able to convert nitrate and nitrite directly to ammonium, maximizing the active nitrogen species capable of recovery. Ferric ions produced by electroactive bacteria can be precipitated with phosphate to recover as vivianite in neutral wastewaters. All these processes employed electroactive bacteria as both nitrate and iron reducer and bioelectric field generator. The mechanism as well as technologies are summarized, and the challenges to further improve their performance are discussed.
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Affiliation(s)
- Nan Li
- School of Environmental Science and Engineering, Tianjin University, No. 92 Weijin Road, Nankai District, Tianjin 300072, China
| | - Yuxuan Wan
- MOE Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, No. 38 Tongyan Road, Jinnan District, Tianjin 300350, China
| | - Xin Wang
- MOE Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, No. 38 Tongyan Road, Jinnan District, Tianjin 300350, China.
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15
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Zhou Z, Chen J, Gu W, Gu JD. Biogeographic pattern of the nirS gene-targeted anammox bacterial community and composition in the northern South China Sea and a coastal Mai Po mangrove wetland. Appl Microbiol Biotechnol 2020; 104:3167-3181. [PMID: 32036435 DOI: 10.1007/s00253-020-10415-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Revised: 01/19/2020] [Accepted: 01/24/2020] [Indexed: 11/29/2022]
Abstract
Functional genes, namely hzo/hao, nirS, hzs, and ccs gene, are efficient with high specificity for detecting anammox bacteria. Sc-nirS and An-nirS primer sets were proposed for targeting Scalindua/non-Scalindua anammox bacterial groups; previously, they have not been assessed for biogeographic study on marine-terrestrial transitional systems, specifically marine and terrestrial ecosystems. Here, we report phylogenetic distribution pattern of anammox bacteria in both northern South China Sea (nSCS) and Mai Po wetland (a coastal mangrove) using nirS gene-based primers. A well-delineated biogeographic distribution pattern from ocean to continental shelf was evident by combining both gene-based analyses as previously depicted using 16S rRNA as the biomarker. Furthermore, factors affecting the abundance and composition of An-nirS genes in Mai Po wetland were identified as substrate (NO3-/NO2- concentration) and anoxic/oxic condition in association to depth. An-nirS gene abundance was from 2.6 × 103 to 1.2-1.4 × 104 copies/g dry sediment in nSCS; and it was around 5 × 103 and 1-2 × 104 copies/g dry sediment in surface and subsurface sediments of Mai Po wetland, respectively. In addition, nirS gene abundance and distribution pattern of denitrifiers and anammox bacteria in the wetland indicates a competition relationship between them. Mangrove vegetation affected the community composition of An-nirS gene considerably, and a more homogeneous distribution pattern was observed in the mangrove forest than intertidal mudflats. Sc/An-nirS gene-based biogeographic insights on anammox bacteria have shed lights on the compositional and potential functional dynamics and emphasized the importance of molecular tools on refining the current microbial ecological patterns.
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Affiliation(s)
- Zhichao Zhou
- Laboratory of Environmental Microbiology and Toxicology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, SAR, People's Republic of China
| | - Jing Chen
- School of Chemical Engineering, Sichuan University, No.24 South Section 1, Yihuan Road, Chengdu, 610065, Sichuan Province, People's Republic of China
| | - Wenjie Gu
- Guangdong Academy of Agricultural Sciences, 29 Jinying Road, Guangzhou, 510000, Guangdong Province, People's Republic of China
| | - Ji-Dong Gu
- Laboratory of Environmental Microbiology and Toxicology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, SAR, People's Republic of China.
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16
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Evaluating the effects of micro-zones of granular sludge on one-stage partial nitritation–anammox nitrogen removal. Bioprocess Biosyst Eng 2020; 43:1037-1049. [DOI: 10.1007/s00449-020-02302-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Accepted: 01/21/2020] [Indexed: 10/25/2022]
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17
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Yang Y, Pan J, Zhou Z, Wu J, Liu Y, Lin JG, Hong Y, Li X, Li M, Gu JD. Complex microbial nitrogen-cycling networks in three distinct anammox-inoculated wastewater treatment systems. WATER RESEARCH 2020; 168:115142. [PMID: 31605831 DOI: 10.1016/j.watres.2019.115142] [Citation(s) in RCA: 68] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2019] [Revised: 08/02/2019] [Accepted: 09/29/2019] [Indexed: 05/05/2023]
Abstract
Microbial nitrogen removal mediated by anaerobic ammonium oxidation (anammox) are cost-effective, yet it is time-consuming to accumulate the slow-growing anammox bacteria in conventional wastewater treatment plants (WWTPs). Inoculation of anammox enriched pellets is an effective way to establish anammox and achieve shortcut nitrogen removal in full-scale WWTPs. However, little is known about the complex microbial nitrogen-cycling networks in these anammox-inoculated WWTPs. Here, we applied metagenomic and metatranscriptomic tools to study the microbial nitrogen removal in three conventional WWTPs, which have been inoculated exogenous anammox pellets, representing partial-nitrification anammox (PNA) and nitrification-denitrification nitrogen removal processes. In the PNA system of Bali (BL), ammonia was partially oxidized by ammonia-oxidizing bacteria (AOB) Nitrosomonas and the oxidized nitrite and the remaining ammonium were directly converted to N2 by anammox bacteria Ca. Brocadia and Ca. Kuenenia. In the nitrification-denitrification system of Wenshan (WS), ammonia-oxidizing archaea (AOA) Thaumarchaeota unexpectedly dominated the nitrifying community in the presence of AOB Nitrosomonas. Meanwhile, the biomass yield of Ca. Brocadia was likely inhibited by the high biodegradable organic compound input and limited by substrate competitions from AOA, AOB, complete ammonia oxidizers (comammox) Nitrospira, nitrite-oxidizing bacteria (NOB) Nitrospira, and heterotrophic denitrifiers. Unexpectedly, comammox Nitrospira was the predominant nitrifier in the presence of AOB Nitrosomonas in the organic carbon-rich nitrification-denitrification system of Linkou (LK). These results clearly showed that distinct active groups were working in concert for an effective nitrogen removal in different WWTPs. This study confirmed the feasibility of anammox application in ammonium-rich systems by direct inoculation of the exogenous anammox pellets and improved our understanding of microbial nitrogen cycling in anammox-driven conventional WWTPs from both physiochemical and omics perspectives.
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Affiliation(s)
- Yuchun Yang
- Laboratory of Environmental Microbiology and Toxicology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Jie Pan
- Institute for Advanced Study, Shenzhen University, Shenzhen, 518060, People's Republic of China
| | - Zhichao Zhou
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA
| | - Jiapeng Wu
- Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, Institute of Environmental Research at Greater Bay, Guangzhou University, Guangzhou, 510006, People's Republic of China; School of Environmental Science and Engineering, Guangzhou University, Guangzhou, 510006, People's Republic of China
| | - Yang Liu
- Institute for Advanced Study, Shenzhen University, Shenzhen, 518060, People's Republic of China
| | - Jih-Gaw Lin
- Institute of Environmental Engineering, National Chiao Tung University, 1001 University Road, Hsinchu City, 30010, Taiwan
| | - Yiguo Hong
- Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, Institute of Environmental Research at Greater Bay, Guangzhou University, Guangzhou, 510006, People's Republic of China; School of Environmental Science and Engineering, Guangzhou University, Guangzhou, 510006, People's Republic of China
| | - Xiaoyan Li
- Department of Civil and Environmental Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Meng Li
- Institute for Advanced Study, Shenzhen University, Shenzhen, 518060, People's Republic of China.
| | - Ji-Dong Gu
- Laboratory of Environmental Microbiology and Toxicology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China.
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18
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Zhang M, Dai P, Lin X, Lin L, Hetharua B, Zhang Y, Tian Y. Nitrogen loss by anaerobic ammonium oxidation in a mangrove wetland of the Zhangjiang Estuary, China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 698:134291. [PMID: 31783447 DOI: 10.1016/j.scitotenv.2019.134291] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2019] [Revised: 08/22/2019] [Accepted: 09/03/2019] [Indexed: 05/05/2023]
Abstract
Anaerobic ammonium oxidation (anammox), a microbial process in which NH4+ is oxidized to N2 gas, is considered a significant nitrogen cycle process, but its significance in mangrove wetland sediments, particularly its depth- and genus-specific distribution and activity have remained uncertain. Here we report the vertical distribution, abundance, activity and role of anammox bacteria in mangrove sediments of Zhangjiang Estuary, China. We used stable isotope-tracer techniques, 16S rRNA and anammox bacterial functional gene (Hydrazine synthase B: hzsB) clone libraries and quantitative polymerase chain reaction (qPCR) assays, along with an assessment of nutrient profiles of sediment core samples. We observed a widespread occurrence of anammox bacteria at different depths of mangrove sediments. The abundance of anammox bacterial 16S rRNA and hzsB genes ranged from 0.41×107 to 9.74×107 and from 0.42×106 to 6.44×106 copies per gram of dry soil and peaked in the upper layer of mangrove sediments. We also verified the co-occurrence of different genera of anammox microorganisms in mangrove sediments, with Candidatus Scalindua and Candidatus Kuenenia being the dominant genera. Potential anammox rates ranged from 4.83 to 277.36 nmolN2·g-1·d-1 at different depths of sediment cores, and the highest rates were found in the deeper layer (70-100cm) of mangrove sediments. Scaling our findings up to the entire mangrove system, we estimated that anammox hotspots accounted for a loss of 751 gN·m-2·y-1, and contributed to over 12% of the nitrogen lost from the deeper layer of mangrove sediments in this region.
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Affiliation(s)
- Manping Zhang
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen 361102, China
| | - Peiliang Dai
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen 361102, China
| | - Xiaolan Lin
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen 361102, China
| | - Li'an Lin
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen 361102, China
| | - Buce Hetharua
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen 361102, China
| | - Yangmei Zhang
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen 361102, China
| | - Yun Tian
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, School of Life Sciences, Xiamen University, Xiamen 361102, China; State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361102, China.
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19
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Mardanov AV, Beletsky AV, Ravin NV, Botchkova EA, Litti YV, Nozhevnikova AN. Genome of a Novel Bacterium " Candidatus Jettenia ecosi" Reconstructed From the Metagenome of an Anammox Bioreactor. Front Microbiol 2019; 10:2442. [PMID: 31736891 PMCID: PMC6828613 DOI: 10.3389/fmicb.2019.02442] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Accepted: 10/10/2019] [Indexed: 11/13/2022] Open
Abstract
The microbial community of a laboratory-scale bioreactor based on the anammox process was investigated by using metagenomic approaches and fluorescent in situ hybridization (FISH). The bioreactor was initially inoculated with activated sludge from the denitrifying bioreactor of a municipal wastewater treatment station. By constantly increasing the ammonium and nitrite load, a microbial community containing the novel species of anammox bacteria "Candidatus Jettenia ecosi" developed in the bioreactor after 5 years when the maximal daily nitrogen removal rate reached 8.5 g/L. Sequencing of the metagenome of anammox granules and the binning of the contigs obtained, allowed a high quality draft genome of the dominant anammox bacterium, "Candidatus Jettenia ecosi" to be assembled. Annotation of the 3.9 Mbp long genome revealed 3970 putative protein-coding genes, 45 tRNA genes, and genes for 16S/23S rRNAs. Analysis of the genome of "Candidatus Jettenia ecosi" revealed genes involved in anammox metabolism, including nitrite and ammonium transporters, copper-containing nitrite reductase, a nitrate reductase complex, hydrazine synthase, and hydrazine dehydrogenase. Autotrophic carbon fixation could be accomplished through the Wood Ljungdahl pathway. The composition of the community was investigated through a search of 16S rRNA sequences in the metagenome and FISH analysis of the anammox granules. The presence of the members of Ignavibacteriae, Betaproteobacteria, Chloroflexi and other microbial lineages reflected the complexity of the microbial processes in the studied bioreactor performed by anammox Planctomycetes, fermentative bacteria, and denitrifiers.
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Affiliation(s)
- Andrey V. Mardanov
- Institute of Bioengineering, Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia
| | - Alexey V. Beletsky
- Institute of Bioengineering, Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia
| | - Nikolai V. Ravin
- Institute of Bioengineering, Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia
| | - Ekaterina A. Botchkova
- Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia
| | - Yuriy V. Litti
- Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia
| | - Alla N. Nozhevnikova
- Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia
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20
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Yang S, Guo B, Shao Y, Mohammed A, Vincent S, Ashbolt NJ, Liu Y. The value of floc and biofilm bacteria for anammox stability when treating ammonia-rich digester sludge thickening lagoon supernatant. CHEMOSPHERE 2019; 233:472-481. [PMID: 31181494 DOI: 10.1016/j.chemosphere.2019.05.287] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Revised: 05/29/2019] [Accepted: 05/30/2019] [Indexed: 06/09/2023]
Abstract
Ammonia-rich lagoon supernatant was treated using anammox process in an integrated fixed-film activated sludge (IFAS) laboratory reactor. Effective anammox activities were demonstrated over 259 days of operation. The ammonium removal efficiency reached 94% in Phase I with influent concentrations of NH4+, NO2- and chemical oxygen demand (COD) at 250 mg-N/L, 325 mg-N/L, and 145 mg-COD/L, and reached 88% in Phase II at 420 mg-N/L, 525 mg-N/L, and 305 mg-COD/L. When supplemented with nitritation effluent for nitrite sources in Phase III, the influent COD concentration increased to 583 mg-COD/L without loss of ammonia removal efficiency (87%). The specific anammox activity was higher in biofilm than in the suspended flocs (P < 0.05), increased from Phase I to II (P < 0.05), and decreased in Phase III. Ammonia removal related genes were quantified using qPCR. Results showed higher anammox gene (AMX nirS) prevalence in biofilm, while denitrification genes (nosZ and narG) were higher in flocs (P < 0.05). Microbial community analysis showed that the seeded anammox bacteria Candidatus Brocadia was maintained at 19% in the biofilm and only 0.3% in the flocs. The major taxa in the flocs were related to denitrifiers. The floc community was affected largely under high COD conditions, but the biofilm community was not. These results suggest that the anammox activity in biofilm is resilient to high COD loadings, due to the existence of flocs with denitrification activity. The segregation of bacterial communities between biofilm and flocs in the anammox IFAS system resulted in high ammonia removal efficiency and resistance to high organic loadings.
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Affiliation(s)
- Sen Yang
- University of Alberta, Department of Civil and Environmental Engineering, Edmonton, Alberta, T6G 1H9, Canada
| | - Bing Guo
- University of Alberta, Department of Civil and Environmental Engineering, Edmonton, Alberta, T6G 1H9, Canada
| | - Yanxi Shao
- University of Alberta, Department of Civil and Environmental Engineering, Edmonton, Alberta, T6G 1H9, Canada
| | | | - Simon Vincent
- Veolia Water Technologies Canada Inc., Montreal, Quebec, H4S 2B3, Canada
| | - Nicholas J Ashbolt
- University of Alberta, School of Public Health, Edmonton, Alberta, T6G 2R3, Canada
| | - Yang Liu
- University of Alberta, Department of Civil and Environmental Engineering, Edmonton, Alberta, T6G 1H9, Canada.
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21
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Chini A, Bolsan AC, Hollas CE, Antes FG, Fongaro G, Treichel H, Kunz A. Evaluation of deammonification reactor performance and microrganisms community during treatment of digestate from swine sludge CSTR biodigester. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2019; 246:19-26. [PMID: 31174028 DOI: 10.1016/j.jenvman.2019.05.113] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2019] [Revised: 05/21/2019] [Accepted: 05/25/2019] [Indexed: 06/09/2023]
Abstract
Digestate from anaerobic processes still contains relatively high amount of total organic carbon (TOC) that can inhibit deammonification. In this sense, the present study investigated the interference of TOC in a lab-scale expanded granular sludge bed (EGSB) deammonification reactor treating digestate from a continuous stirred tank reactor (CSTR) swine sludge biodigester. Additionally, the microorganisms community was analyzed when the process was submitted to different operational conditions. The study was divided into three phases according to the C/N ratio (0, 0.5 and 1 for phase I, phase II and phase III, respectively). At phase I the average nitrogen removal efficiency (NRE) was 65 ± 1.6%. With the increase of TOC in phase II (156 ± 8.15 mg L-1) the average NRE was 61 ± 9.8% which is statically equivalent to phase I (p < 0.05). On the other hand, at phase III (TOC was increased to 255 ± 3.50 mg L-1) the NRE decreased to 50 ± 3.9% which was 22% lower than in phase II. Stoichiometric coefficients of N2 was close to theoretical values during all experimental phases, while stoichiometric coefficient of N-NO3- was lower than theoretical values specially during phase III. Ca. Jettenia was favored when the reactor was fed with digestate although its proportion decreased in phase III. Thus, at the conditions employed in the present study it is recommended to use a C/N ratio of 0.5 (TOC concentration around 156 mg L-1) to treat digestate by deammonification process, in order to not diminish anammox microorganisms abundance. Thereby, the microorganisms community can be modulated based on carbon and nitrogen loading rates of a deammonification reactor for swine manure treatment purpose.
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Affiliation(s)
- Angélica Chini
- Western Paraná State University, 85819-110, Cascavel, PR, Brazil
| | | | | | | | - Gislaine Fongaro
- Santa Catarina Federal University, 88040-900, Florianópolis, SC, Brazil
| | - Helen Treichel
- Federal University of Fronteira Sul, 99700-000, Erechim, RS, Brazil
| | - Airton Kunz
- Western Paraná State University, 85819-110, Cascavel, PR, Brazil; Embrapa Suínos e Aves, 89715-899, Concórdia, SC, Brazil; Federal University of Fronteira Sul, 99700-000, Erechim, RS, Brazil.
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22
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Tao Y, Huang X, Gao D, Wang X, Chen C, Liang H, van Loosdrecht MCM. NanoSIMS reveals unusual enrichment of acetate and propionate by an anammox consortium dominated by Jettenia asiatica. WATER RESEARCH 2019; 159:223-232. [PMID: 31100576 DOI: 10.1016/j.watres.2019.05.006] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Revised: 05/02/2019] [Accepted: 05/03/2019] [Indexed: 06/09/2023]
Abstract
Anaerobic ammonium-oxidizing (anammox) bacteria convert ammonium and nitrite into N2 in a chemolithoautotrophic way, meaning that they utilize CO2/HCO3 solely as their carbon sources. Such autotrophic behavior limits their competitiveness with heterotrophic microorganisms in both natural environments and engineered systems. Recently, environmental metagenomic results have indicated the capability of anammox bacteria to metabolize short-chain fatty acids, further confirmed by limited experimental evidence based on highly enriched cultures. However, clear evidence is difficult to get because of the limits of traditional methodologies which rely on the availability of a pure anammox culture. In this study, we identified and quantified the uptake of acetate and propionate, on a single-cell level, by an anammox consortium that was dominated by Candidatus Jettenia asiatica (relative abundance of 96%). The consortium, growing in granular form with an average relative abundance of anammox bacteria of 96.0%, was firstly incubated in a13C-labelled acetate or propionate medium; then microtome sections were scanned by a nanometer-scale secondary ion mass spectrometer (NanoSIMS). The NanoSIMS scannings revealed that the consortium enriched acetate and propionate at a >10 times higher efficiency than bicarbonate incorporation. Our results also suggest that acetate or propionate was likely not assimilated by J. asiatica directly, but firstly oxidized to CO2, which then served as carbon sources for the follow-up autotrophy in J. asiatica cells. Furthermore, more [15N]ammonium was enriched by the propionate-fed consortium than the acetate-fed consortium despite that exactly the same amount of 13C atoms were supplied. Our study strongly indicates an alternative lifestyle, namely organotrophy, in addition to chemolithoautotrophy of anammox bacteria, making it more versatile than often expected. It suggests that the niche of anammox bacteria in both natural and engineered ecosystems can be much broader than usual assumed. Recognising this is important for their role in wastewater treatment and the global nitrogen turn-over rates.
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Affiliation(s)
- Yu Tao
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Xiaoli Huang
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Dawen Gao
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China; School of Environment, Harbin Institute of Technology, Harbin, 150090, China.
| | - Xiaolong Wang
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Chunhong Chen
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Hong Liang
- School of Environment, Harbin Institute of Technology, Harbin, 150090, China
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23
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Wu ZY, Liu Y, Wang SY, Peng P, Li XY, Xu J, Li WH. A novel integrated system of three-dimensional electrochemical reactors (3DERs) and three-dimensional biofilm electrode reactors (3DBERs) for coking wastewater treatment. BIORESOURCE TECHNOLOGY 2019; 284:222-230. [PMID: 30939384 DOI: 10.1016/j.biortech.2019.03.123] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Revised: 03/22/2019] [Accepted: 03/25/2019] [Indexed: 06/09/2023]
Abstract
Treatment of coking wastewater is a great challenge due to their instinct characteristics of high concentration, complex composition and biological toxicity. In this work, a novel integrated system comprising three-dimensional electrochemical reactors (3DERs) and three-dimensional biofilm electrode reactors (3DBERs) in series is developed for coking wastewater treatment. Results indicate that 79.63% of COD as well as 76.30% of total nitrogen could be removed at the low energy consumption of 15.6 kWh/m3. 3DERs mainly contribute to COD and nitrogen removal through electrochemical oxidation/reduction, while 3DBERs are responsible for nitrification process by enriched functional microbes. After treating by the integrated system, only long-chain alkanes are left in the wastewater and the toxicity of effluent is significantly reduced. This integrated 3DERs-3DBERs system exhibits capability of simultaneously eliminating carbonaceous and nitrogenous contaminants in coking wastewater, and greatly saves the energy with synergy of electricity and biofilm.
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Affiliation(s)
- Zhen-Yu Wu
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Yang Liu
- School of Environment and Energy Engineering, Anhui Jianzhu University, Hefei, China
| | - Si-Yuan Wang
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Pin Peng
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Xiu-Yan Li
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Juan Xu
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China; Institute of Eco-Chongming, East China Normal University, Shanghai, China.
| | - Wei-Hua Li
- School of Environment and Energy Engineering, Anhui Jianzhu University, Hefei, China
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24
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Abstract
Nitric oxide (NO) has important functions in biology and atmospheric chemistry as a toxin, signaling molecule, ozone depleting agent and the precursor of the greenhouse gas nitrous oxide (N2O). Although NO is a potent oxidant, and was available on Earth earlier than oxygen, it is unclear whether NO can be used by microorganisms for growth. Anaerobic ammonium-oxidizing (anammox) bacteria couple nitrite reduction to ammonium oxidation with NO and hydrazine as intermediates, and produce N2 and nitrate. Here, we show that the anammox bacterium Kuenenia stuttgartiensis is able to grow in the absence of nitrite by coupling ammonium oxidation to NO reduction, and produce only N2. Under these growth conditions, the transcription of proteins necessary for NO generation is downregulated. Our work has potential implications in the control of N2O and NO emissions from natural and manmade ecosystems, where anammox bacteria contribute significantly to N2 release to the atmosphere. We hypothesize that microbial NO-dependent ammonium oxidation may have existed on early Earth.
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25
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Metagenomics Response of Anaerobic Ammonium Oxidation (anammox) Bacteria to Bio-Refractory Humic Substances in Wastewater. WATER 2019. [DOI: 10.3390/w11020365] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Anammox-based processes have been widely applied for the treatment of wastewater (e.g., wastewater irrigation systems and constructed wetland) which consists of bio-refractory humic substances. Nonetheless, the impacts of bio-refractory humic substances on anammox consortia are rarely reported. In the present study, three identical lab-scale anammox reactors (i.e., HS0, HS1 and HS10), two of which were dosed with humic substances at 1 and 10 mg·L−1, respectively, were operated for nearly one year. The long-term operation of the reactors showed that the presence of humic substances in influent had no significant influence on nitrogen removal rates. Despite this, comparative metagenomics showed changes in anammox microbiota structure during the exposure to humic substance; e.g., the relative abundance of Candidatus Kuenenia was lower in HS10 (18.5%) than that in HS0 (22.8%) and HS1 (21.7%). More specifically, a lower level of humic substances (1 mg·L−1) in influent led to an increase of genes responsible for signal transduction, likely due to the role of humic substances as electron shuttles. In contrast, a high level of humic substances (10 mg·L−1) resulted in a slight decrease of functional genes associated with anammox metabolism. This may partially be due to the biodegradation of the humic substances. In addition, the lower dosage of humic substances (1 mg·L−1) also stimulated the abundance of hzs and hdh, which encode two important enzymes in anammox reaction. Overall, this study indicated that the anammox system could work stably over a long period under humic substances, and that the process was feasible for leachate treatment.
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26
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Qin H, Ji B, Zhang S, Kong Z. Study on the bacterial and archaeal community structure and diversity of activated sludge from three wastewater treatment plants. MARINE POLLUTION BULLETIN 2018; 135:801-807. [PMID: 30301100 DOI: 10.1016/j.marpolbul.2018.08.010] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2017] [Revised: 07/31/2018] [Accepted: 08/02/2018] [Indexed: 06/08/2023]
Abstract
In this study, the bacterial and archaeal communities along with their functions of activated sludge from three wastewater treatment plants were investigated by Illumina MiSeq Platform. The treatment processes were modified A/A/O, DE oxidation ditch and pre-anaerobic carrousel oxidation ditch, respectively. The taxonomic analyses showed that Proteobacteria was the predominant bacterial phylum, and Nitrosospira was the dominant nitrification genus. Candidatus Accumulibacter was abundant in DE oxidation ditch process, and the main archaea communities were methanosaeta-like species which had the capability to anaerobic ammonia oxidation. The results illustrated that anaerobic ammonium oxidation played an important role in the nitrogen metabolism and there might be other unknown phosphate-accumulating organisms (PAOs) performing phosphorus removal in activated sludge. The predicted function analyses indicated that both bacteria and archaea were involved in nitrification, denitrification, ammonification and phosphorus removal processes, and their relative abundance varied metabolic modules differed from each other.
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Affiliation(s)
- Hui Qin
- School of Urban Construction, Wuhan University of Science and Technology, Wuhan 430065, China
| | - Bin Ji
- School of Urban Construction, Wuhan University of Science and Technology, Wuhan 430065, China.
| | - Shufei Zhang
- Guangdong Provincial Key Laboratory of Fishery Ecology and Environment, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510300, China
| | - Zehua Kong
- Department of Civil and Structural Engineering, Sir Frederick Mappin Building, Mappin Street, Sheffield S1 3JD, UK
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27
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Lin X, Wang Y, Ma X, Yan Y, Wu M, Bond PL, Guo J. Evidence of differential adaptation to decreased temperature by anammox bacteria. Environ Microbiol 2018; 20:3514-3528. [PMID: 30051608 DOI: 10.1111/1462-2920.14306] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2017] [Accepted: 06/05/2018] [Indexed: 11/27/2022]
Abstract
Low temperature is recognized as one of the major barriers for the application of the anaerobic ammonium oxidation (anammox) process to treat mainstream wastewater. Studies are yet to reveal the underlying biological limitations and molecular mechanisms associated with the inhibition of low temperature on the anammox process. In this study, metaproteomics was used to examine proteome modulation patterns of the anammox community occurring at different temperatures. The anammox community remarkably altered their proteomes when the temperature decreased from 35 °C to 20 °C. This was especially for proteins involved in energy conversion, transcription and translation and inorganic ion transport. However, at 15 °C the anammox activities became distinctly inhibited, and there was evidence of energy limitations and severe stress in Candidatus Kuenenia and to a lesser degree in Candidatus Brocadia. Candidatus Jettenia exhibited more changes in its proteome at 15 °C. From the proteomes, at the lower temperatures there was evidence of stress caused by toxic nitrogen compounds or reactive oxygen species in the anammox bacteria. Hydroxylamine oxidoreductase (HAO)-like proteins and an oxidative stress response protein (a catalase) were in high abundance to potentially ameliorate these inhibitory effects. This study offers metaproteomic insight into the anammox community-based physiological response to decreasing temperatures.
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Affiliation(s)
- Ximao Lin
- State Key Laboratory of Pollution Control and Resources Reuse, Shanghai Institute of Pollution Control and Ecological Security, College of Environmental Science and Engineering, Tongji University, Siping Road, Shanghai, 200092, People's Republic of China
| | - Yayi Wang
- State Key Laboratory of Pollution Control and Resources Reuse, Shanghai Institute of Pollution Control and Ecological Security, College of Environmental Science and Engineering, Tongji University, Siping Road, Shanghai, 200092, People's Republic of China
| | - Xiao Ma
- State Key Laboratory of Pollution Control and Resources Reuse, Shanghai Institute of Pollution Control and Ecological Security, College of Environmental Science and Engineering, Tongji University, Siping Road, Shanghai, 200092, People's Republic of China
| | - Yuan Yan
- State Key Laboratory of Pollution Control and Resources Reuse, Shanghai Institute of Pollution Control and Ecological Security, College of Environmental Science and Engineering, Tongji University, Siping Road, Shanghai, 200092, People's Republic of China
| | - Min Wu
- State Key Laboratory of Pollution Control and Resources Reuse, Shanghai Institute of Pollution Control and Ecological Security, College of Environmental Science and Engineering, Tongji University, Siping Road, Shanghai, 200092, People's Republic of China
| | - Philip L Bond
- Advanced Water Management Centre (AWMC), The University of Queensland, QLD, St. Lucia, 4072, Australia
| | - Jianhua Guo
- Advanced Water Management Centre (AWMC), The University of Queensland, QLD, St. Lucia, 4072, Australia
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28
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Zhu G, Wang S, Li Y, Zhuang L, Zhao S, Wang C, Kuypers MMM, Jetten MSM, Zhu Y. Microbial pathways for nitrogen loss in an upland soil. Environ Microbiol 2018. [PMID: 29528547 DOI: 10.1111/1462-2920.14098] [Citation(s) in RCA: 52] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
The distribution and importance of anaerobic ammonium oxidation (anammox) and nitrite-dependent anaerobic methane oxidation (n-damo) have been identified in aquatic ecosystems; their role in agricultural upland soils however has not yet been well investigated. In this study, we examined spatio-temporal distributions of anammox and n-damo bacteria in soil profiles (300 cm depth) from an agricultural upland. Monitoring nitrogen (N) conversion activity using isotope-tracing techniques over the course of one year showed denitrification (99.0% N-loss in the winter and 85.0% N-loss in the summer) predominated over anammox (1.0% N-loss in the winter and 14.4% N-loss in the summer) and n-damo (0.6% N-loss in the winter) in surface soils (0-20 cm). While below 20 cm depth, N-loss was dominated by anammox (79.4 ± 14.3% in the winter and 65.4 ± 12.5% in the summer) and n-damo was not detected. Phylogenetic analysis showed that Candidatus Brocadia anammoxidans dominated the anammox community in the surface soil and Candidatus Brocadia fulgida dominated below 20 cm depth. Dissimilatory nitrate reduction to ammonium (DNRA), another nitrite reduction process, was found to play a limited role (4.9 ± 3.5%) in the surface soil compared with denitrification; below 80 cm DNRA rates were much higher than rates of anammox and denitrification. Ammonium oxidation was the main source of NO2- above 80 cm (70.9 ± 23.3%), the key influencing factor on anammox rates, and nitrate reduction (100%) was the main NO2- source below 80 cm. Considering the anammox, n-damo and denitrification rates as a whole in the sampled soil profile, denitrification is still the main N-loss process in upland soils.
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Affiliation(s)
- Guibing Zhu
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, People's Republic of China.,Department of Biogeochemistry, Max Planck Institute for Marine Microbiology, Bremen, Germany.,University of Chinese Academy of Sciences, Beijing 100049, People's Republic of China
| | - Shanyun Wang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, People's Republic of China
| | - Yixiao Li
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, People's Republic of China
| | - Linjie Zhuang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, People's Republic of China
| | - Siyan Zhao
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, People's Republic of China.,University of Chinese Academy of Sciences, Beijing 100049, People's Republic of China
| | - Cheng Wang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, People's Republic of China.,University of Chinese Academy of Sciences, Beijing 100049, People's Republic of China
| | - Marcel M M Kuypers
- Department of Biogeochemistry, Max Planck Institute for Marine Microbiology, Bremen, Germany
| | - Mike S M Jetten
- Department of Microbiology, Radboud University, Nijmegen, the Netherlands
| | - Yongguan Zhu
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, People's Republic of China
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29
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van Kessel MA, Stultiens K, Slegers MF, Guerrero Cruz S, Jetten MS, Kartal B, Op den Camp HJ. Current perspectives on the application of N-damo and anammox in wastewater treatment. Curr Opin Biotechnol 2018; 50:222-227. [PMID: 29477927 DOI: 10.1016/j.copbio.2018.01.031] [Citation(s) in RCA: 57] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2017] [Revised: 01/29/2018] [Accepted: 01/31/2018] [Indexed: 10/18/2022]
Abstract
The efficient treatment of wastewater for the removal of nitrogen is of key importance to prevent eutrophication and deoxygenation of receiving water bodies. In addition, ineffective wastewater treatment can be a source of greenhouse gasses. The application of newly discovered microbial processes, such as nitrite/nitrate-dependent methane oxidation (N-damo), can make wastewater treatment systems more sustainable; especially when they are combined with anaerobic ammonium oxidation (anammox). A treatment system based on these microbial processes will need oxygen supply for the production of nitrite. This oxygen may inhibit N-damo and anammox and careful regulation of the oxygen supply is of key importance for the success of the application of N-damo in wastewater treatment.
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Affiliation(s)
- Maartje Ahj van Kessel
- Department of Microbiology, IWWR, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands.
| | - Karin Stultiens
- Department of Microbiology, IWWR, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Monique Fw Slegers
- Department of Microbiology, IWWR, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Simon Guerrero Cruz
- Department of Microbiology, IWWR, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Mike Sm Jetten
- Department of Microbiology, IWWR, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands; Department of Biotechnology, TU Delft, Julianalaan 67, 2628 BC Delft, The Netherlands
| | - Boran Kartal
- Department of Microbiology, IWWR, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands; Microbial Physiology Group, MPI for Marine Microbiology, Celsiusstraβe 1, D-28359 Bremen, Germany
| | - Huub Jm Op den Camp
- Department of Microbiology, IWWR, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
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30
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Tang X, Guo Y, Wu S, Chen L, Tao H, Liu S. Metabolomics Uncovers the Regulatory Pathway of Acyl-homoserine Lactones Based Quorum Sensing in Anammox Consortia. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:2206-2216. [PMID: 29378137 DOI: 10.1021/acs.est.7b05699] [Citation(s) in RCA: 106] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Acyl-homoserine lactones (AHLs)-mediated quorum sensing in bacterial communities have been extensively observed. However, the metabolic pathways regulated by AHLs in bacteria remain elusive. Here, we combined long-term reactor operation with microbiological and metabolomics analyses to explore the regulatory pathways for different AHLs in anammox consortia, which perform promising nitrogen removal for wastewater treatment. The results showed that no obvious shifts induced by exogenous AHLs occurred in the microbial community and, mainly, dosing AHLs induced changes in the metabolites. 3OC6-HSL, C6-HSL, and C8-HSL controlled the electron transport carriers that influence the bacterial activity. In contrast, only 3OC6-HSL regulated LysoPC(20:0) metabolism, which affected bacterial growth. AHLs mainly regulated the synthesis of the amino acids Ala, Val, and Glu and selectively regulated Asp and Leu to affect extracellular proteins. Simultaneously, all the AHLs regulated the ManNAc biosynthetic pathways, while OC6-HSL, OC8-HSL, and C6-HSL particularly enriched the UDP-GlcNAc pathway to promote exopolysaccharides, resulting in different aggregation levels of the anammox consortia. Our results not only provide the first metabolic insights into the means by which AHLs affect anammox consortia but also hint at potential strategies for overcoming the limitations of the long start-up period required for wastewater treatment by anammox processing.
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Affiliation(s)
- Xi Tang
- Key Laboratory of Water and Sediment Sciences, Ministry of Education of China , Beijing 100871, China
- College of Environmental Sciences and Engineering, Peking University , Beijing 100871, China
| | - Yongzhao Guo
- Key Laboratory of Water and Sediment Sciences, Ministry of Education of China , Beijing 100871, China
- School of Environment and Energy, Shenzhen Graduate School, Peking University , Shenzhen 518055, China
| | - Shanshan Wu
- Key Laboratory of Water and Sediment Sciences, Ministry of Education of China , Beijing 100871, China
- College of Environmental Sciences and Engineering, Peking University , Beijing 100871, China
| | - Liming Chen
- Key Laboratory of Water and Sediment Sciences, Ministry of Education of China , Beijing 100871, China
- College of Environmental Sciences and Engineering, Peking University , Beijing 100871, China
| | - Huchun Tao
- School of Environment and Energy, Shenzhen Graduate School, Peking University , Shenzhen 518055, China
| | - Sitong Liu
- Key Laboratory of Water and Sediment Sciences, Ministry of Education of China , Beijing 100871, China
- College of Environmental Sciences and Engineering, Peking University , Beijing 100871, China
- School of Environment and Energy, Shenzhen Graduate School, Peking University , Shenzhen 518055, China
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Ciesielski S, Czerwionka K, Sobotka D, Dulski T, Makinia J. The metagenomic approach to characterization of the microbial community shift during the long-term cultivation of anammox-enriched granular sludge. J Appl Genet 2017; 59:109-117. [PMID: 29230681 PMCID: PMC5799322 DOI: 10.1007/s13353-017-0418-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2017] [Revised: 11/02/2017] [Accepted: 11/21/2017] [Indexed: 11/17/2022]
Abstract
A metagenomic approach was used to investigate how the microbial community composition changes when an anammox-based granular sludge reactor is seeded with nitritation-anammox biomass from a wastewater treatment plant. In the seed sample, the abundance of Candidatus Kuenenia stuttgartiensis was similar to Candidatus Jettenia caeni (12.63 vs. 11.68%). This biomass was typical in terms of microbial nitrogen conversion; both ammonia (Nitrosomonas sp.) and nitrite (Nitrospira sp.) oxidizing bacteria were detected. In the lab-scale reactor, Candidatus Kuenenia stuttgartiensis and Candidatus Jettenia caeni bacteria were also present in equal proportions (18.57 vs. 20.89%). On the contrary, Candidatus Nitrospira defluvii bacteria were highly abundant in this reactor, but no known ammonia-oxidizing bacteria were detected. In light of recent studies showing that Nitrospira sp. are capable of complete nitrification, the results presented here may well indicate that both stages of nitrification in the anammox-based granular sludge reactor were performed by this bacteria.
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Affiliation(s)
- Slawomir Ciesielski
- Department of Environmental Biotechnology, University of Warmia and Mazury in Olsztyn, Sloneczna 45G, 10-917, Olsztyn, Poland.
| | - Krzysztof Czerwionka
- Faculty of Civil and Environmental Engineering, Gdansk University of Technology, Narutowicza 11/12, 80-233, Gdansk, Poland
| | - Dominika Sobotka
- Faculty of Civil and Environmental Engineering, Gdansk University of Technology, Narutowicza 11/12, 80-233, Gdansk, Poland
| | - Tomasz Dulski
- Department of Environmental Biotechnology, University of Warmia and Mazury in Olsztyn, Sloneczna 45G, 10-917, Olsztyn, Poland
| | - Jacek Makinia
- Faculty of Civil and Environmental Engineering, Gdansk University of Technology, Narutowicza 11/12, 80-233, Gdansk, Poland
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Viancelli A, Pra MC, Scussiato LA, Cantão M, Ibelli AMG, Kunz A. Preservation and reactivation of Candidatus Jettenia asiatica and Anammoxoglobus propionicus using different preservative agents. CHEMOSPHERE 2017; 186:453-458. [PMID: 28806673 DOI: 10.1016/j.chemosphere.2017.07.053] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2017] [Revised: 07/10/2017] [Accepted: 07/11/2017] [Indexed: 06/07/2023]
Abstract
Anaerobic ammonium oxidation (anammox) bacteria have peculiar characteristics that make them difficult to cultivate. The conservation of these microorganisms in culture collections or laboratories requires successful preservation and reactivation techniques. Furthermore, studies have shown that successful reactivation may be preservative dependent. Considering this, the present study aimed to evaluate the preservation and reactivation of anammox consortia enriched from swine manure treatment lagoons, by using different preservative agents at different temperatures: KNO3 (at 4 °C), glycerol (-20 °C, -80 °C), and skimmed cow milk (-20 °C, -80 °C, -200 °C). After 4 months, the biomass was thawed (except for KNO3), and the reestablishment of anammox activity was evaluated by stoichiometric coefficients. Microbial community transformation during the reactivation process was also studied by 16S rDNA sequence analysis. The results showed that the anammox biomass preserved with glycerol or skimmed cow milk at -80 °C recovered activity, while the biomass preserved with other methodologies did not reestablish activity during the studied time (90 days). The bacterial community from the biomass with anammox activity was characterized and showed the presence of Candidatus Brocadia anammoxidans, Candidatus Jettenia asiatica, and Candidatus Anammoxoglobus propionicus. Preservation with skimmed cow milk at -80 °C favored the selection of Candidatus Anammoxoglobus propionicus, while preservation with glycerol at -80 °C was successful for Candidatus Jettenia asiatica. The present study was effective on anammox sludge preservation and reactivation using low-cost processes for anammox cultures preservation, which is important for biomass transport and deammonification reactor start up.
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Affiliation(s)
- A Viancelli
- Complexo de Desenvolvimento Científico - Universidade do Contestado, 89700-000, Concórdia, SC, Brazil
| | - M C Pra
- Embrapa Suínos e Aves, 89700-000, Concórdia, SC, Brazil
| | | | - M Cantão
- Embrapa Suínos e Aves, 89700-000, Concórdia, SC, Brazil
| | - A M G Ibelli
- Embrapa Suínos e Aves, 89700-000, Concórdia, SC, Brazil
| | - A Kunz
- Embrapa Suínos e Aves, 89700-000, Concórdia, SC, Brazil; PGEAGRI/CCET, UNIOESTE, Cascavel, PR, Brazil.
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Assessment of molecular detection of anaerobic ammonium-oxidizing (anammox) bacteria in different environmental samples using PCR primers based on 16S rRNA and functional genes. Appl Microbiol Biotechnol 2017; 101:7689-7702. [PMID: 28932888 DOI: 10.1007/s00253-017-8502-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Revised: 08/10/2017] [Accepted: 08/26/2017] [Indexed: 10/18/2022]
Abstract
Eleven published PCR primer sets for detecting genes encoding 16S ribosomal RNA (rRNA), hydrazine oxidoreductase (HZO), cytochrome cd 1-containing nitrite reductase (NirS), and hydrazine synthase subunit A (HzsA) of anaerobic ammonium-oxidizing (anammox) bacteria were assessed for the diversity and abundance of anammox bacteria in samples of three environments: wastewater treatment plant (WWTP), wetland of Mai Po Nature Reserve (MP), and the South China Sea (SCS). Consistent phylogenetic results of three biomarkers (16S rRNA, hzo, and hzsA) of anammox bacteria were obtained from all samples. WWTP had the lowest diversity with Candidatus Kuenenia dominating while the SCS was dominated by Candidatus Scalindua. MP showed the highest diversity of anammox bacteria including C. Scalindua, C. Kuenenia, and Candidatus Brocadia. Comparing different primer sets, no significant differences in specificity for 16S rRNA gene could be distinguished. Primer set CL1 showed relatively high efficiency in detecting the anammox bacterium hzo gene from all samples, while CL2 showed greater selectivity for WWTP samples. The recently reported primer sets of the hzsA gene resulted in high efficiencies in detecting anammox bacteria while nirS primer sets were more selective for specific samples. Results collectively indicate that the distribution of anammox bacteria is niche-specific within different ecosystems and primer specificity may cause biases on the diversity detected.
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Bhattacharjee AS, Wu S, Lawson CE, Jetten MSM, Kapoor V, Domingo JWS, McMahon KD, Noguera DR, Goel R. Whole-Community Metagenomics in Two Different Anammox Configurations: Process Performance and Community Structure. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2017; 51:4317-4327. [PMID: 28306234 PMCID: PMC6540106 DOI: 10.1021/acs.est.6b05855] [Citation(s) in RCA: 66] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Anaerobic ammonia oxidation (anammox) combined with partial nitritation (PN) is an innovative treatment process for energy-efficient nitrogen removal from wastewater. In this study, we used genome-based metagenomics to investigate the overall community structure and anammox species enriched in suspended growth (SGR) and attached growth packed-bed (AGR) anammox reactors after 220 days of operation. Both reactors removed more than 85% of the total inorganic nitrogen. Metagenomic binning and phylogenetic analysis revealed that two anammox population genomes, affiliated with the genus Candidatus Brocadia, were differentially abundant between the SGR and AGR. Both of the genomes shared an average nucleotide identify of 83%, suggesting the presence of two different species enriched in both of the reactors. Metabolic reconstruction of both population genomes revealed key aspects of their metabolism in comparison to known anammox species. The community composition of both the reactors was also investigated to identify the presence of flanking community members. Metagenomics and 16S rRNA gene amplicon sequencing revealed the dominant flanking community members in both reactors were affiliated with the phyla Anaerolinea, Ignavibacteria, and Proteobacteria. Findings from this research adds two new species, Ca. Brocadia sp. 1 and Ca. Brocadia sp. 2, to the genus Ca. Brocadia and sheds light on their metabolism in engineered ecosystems.
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Affiliation(s)
- Ananda S Bhattacharjee
- Department of Civil and Environmental Engineering, University of Utah , Salt Lake City, Utah 84112, United States
| | - Sha Wu
- Department of Civil and Environmental Engineering, University of Utah , Salt Lake City, Utah 84112, United States
| | - Christopher E Lawson
- Department of Civil and Environmental Engineering, University of Wisconsin-Madison , 1415 Engineering Drive, Madison, Wisconsin 53706, United States
| | - Mike S M Jetten
- Department of Microbiology, Radboud University , Nijmegen 6525 HP, The Netherlands
| | - Vikram Kapoor
- Department of Civil and Environmental Engineering, University of Texas at San Antonio , 1 UTSA Circle, San Antonio, Texas 78249, United States
| | - Jorge W Santo Domingo
- Office of Research and Development, National Risk Management Research Laboratory, U.S. Environmental Protection Agency , Cincinnati, Ohio 45268, United States
| | - Katherine D McMahon
- Department of Civil and Environmental Engineering, University of Wisconsin-Madison , 1415 Engineering Drive, Madison, Wisconsin 53706, United States
- Department of Bacteriology, University of Wisconsin-Madison , 1550 Linden Drive, Madison, Wisconsin 53706, United States
| | - Daniel R Noguera
- Department of Civil and Environmental Engineering, University of Wisconsin-Madison , 1415 Engineering Drive, Madison, Wisconsin 53706, United States
| | - Ramesh Goel
- Department of Civil and Environmental Engineering, University of Utah , Salt Lake City, Utah 84112, United States
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Sobotka D, Tuszynska A, Kowal P, Ciesielski S, Czerwionka K, Makinia J. Long-term performance and microbial characteristics of the anammox-enriched granular sludge cultivated in a bench-scale sequencing batch reactor. Biochem Eng J 2017. [DOI: 10.1016/j.bej.2017.01.007] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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36
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Park H, Brotto AC, van Loosdrecht MCM, Chandran K. Discovery and metagenomic analysis of an anammox bacterial enrichment related to Candidatus "Brocadia caroliniensis" in a full-scale glycerol-fed nitritation-denitritation separate centrate treatment process. WATER RESEARCH 2017; 111:265-273. [PMID: 28088723 DOI: 10.1016/j.watres.2017.01.011] [Citation(s) in RCA: 72] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2016] [Revised: 01/03/2017] [Accepted: 01/04/2017] [Indexed: 06/06/2023]
Abstract
A distinctive red biofilm was observed in a glycerol-fed digester liquid effluent treatment process coupling partial nitrification (nitritation) and partial denitrification (denitritation) processes. Based on initial phylogenetic screening using 16S rRNA clone libraries and quantitative polymerase chain reaction, the biofilm was enriched in novel anaerobic ammonium oxidizing bacteria (AMX/anammox) closely related to Candidatus "Brocadia caroliniensis". The metabolic functionality of the C. "Brocadia caroliniensis" enrichment was further explored using high-throughput sequencing and de novo metagenome assembly. The population anammox genome that was binned from the metagenome consisted of 209 contigs with a total of 3.73 Mbp consensus sequences having 43.3% GC content, and 27.4 average coverage depth. The assembled metagenome bin was comprised of 3582 open reading frames (ORFs). Based on 16S rRNA similarity the binned metagenome was closely related with Candidatus "Brocadia caroliniensis", Candidatus "Brocadia fulgida", planctomycete KSU-1, and Candidatus "Kuenenia stuttgartiensis" with 99%, 96%, 92% and 93% similarity, respectively. Essential genes in anammox metabolic functions including ammonium and nitrite transport, hydrazine synthesis, electron transfer for catabolism, and inorganic carbon fixation, among several other anabolic pathways, were also observed in the population genome of the C. "Brocadia caroliniensis" related enrichment. Our results demonstrate the wider profusion of anammox bacteria in engineered nitrogen removal systems than expected. The utility of metagenomics approaches to deciphering such novel functionality in these systems is also highlighted.
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Affiliation(s)
- Hongkeun Park
- Department of Earth and Environmental Engineering, Columbia University, New York, NY 10027, USA
| | - Ariane C Brotto
- Department of Earth and Environmental Engineering, Columbia University, New York, NY 10027, USA
| | - Mark C M van Loosdrecht
- Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628BC Delft, The Netherlands
| | - Kartik Chandran
- Department of Earth and Environmental Engineering, Columbia University, New York, NY 10027, USA.
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Gonzalez-Silva BM, Rønning AJ, Andreassen IK, Bakke I, Cervantes FJ, Østgaard K, Vadstein O. Changes in the microbial community of an anammox consortium during adaptation to marine conditions revealed by 454 pyrosequencing. Appl Microbiol Biotechnol 2017; 101:5149-5162. [DOI: 10.1007/s00253-017-8160-5] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2016] [Revised: 01/22/2017] [Accepted: 01/26/2017] [Indexed: 12/22/2022]
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Matassi G. Horizontal gene transfer drives the evolution of Rh50 permeases in prokaryotes. BMC Evol Biol 2017; 17:2. [PMID: 28049420 PMCID: PMC5209957 DOI: 10.1186/s12862-016-0850-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2016] [Accepted: 12/09/2016] [Indexed: 01/22/2023] Open
Abstract
Background Rh50 proteins belong to the family of ammonia permeases together with their Amt/MEP homologs. Ammonia permeases increase the permeability of NH3/NH4+ across cell membranes and are believed to be involved in excretion of toxic ammonia and in the maintenance of pH homeostasis. RH50 genes are widespread in eukaryotes but absent in land plants and fungi, and remarkably rare in prokaryotes. The evolutionary history of RH50 genes in prokaryotes is just beginning to be unveiled. Results Here, a molecular phylogenetic approach suggests horizontal gene transfer (HGT) as a primary force driving the evolution and spread of RH50 among prokaryotes. In addition, the taxonomic distribution of the RH50 gene among prokaryotes turned out to be very narrow; a single-copy RH50 is present in the genome of only a small proportion of Bacteria, and, first evidence to date, in only three methanogens among Euryarchaea. The coexistence of RH50 and AMT in prokaryotes seems also a rare event. Finally, phylogenetic analyses were used to reconstruct the HGT network along which prokaryotic RH50 evolution has taken place. Conclusions The eukaryotic or bacterial “origin” of the RH50 gene remains unsolved. The RH50 prokaryotic HGT network suggests a preferential directionality of transfer from aerobic to anaerobic organisms. The observed HGT events between archaeal methanogens, anaerobic and aerobic ammonia-oxidizing bacteria suggest that syntrophic relationships play a major role in the structuring of the network, and point to oxygen minimum zones as an ecological niche that might be of crucial importance for HGT-driven evolution. Electronic supplementary material The online version of this article (doi:10.1186/s12862-016-0850-6) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Giorgio Matassi
- Dipartimento di Scienze Agro-alimentari, Ambientali e Animali (DI4A), Università di Udine, Via delle Scienze, 206-33100, Udine, Italy.
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New PCR primers targeting hydrazine synthase and cytochrome c biogenesis proteins in anammox bacteria. Appl Microbiol Biotechnol 2016; 101:1267-1287. [PMID: 28032194 DOI: 10.1007/s00253-016-8013-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2016] [Revised: 11/12/2016] [Accepted: 11/14/2016] [Indexed: 01/13/2023]
Abstract
PCR primers targeting genes encoding the two proteins of anammox bacteria, hydrazine synthase and cytochrome c biogenesis protein, were designed and tested in this study. Three different ecotypes of samples, namely ocean sediments, coastal wetland sediments, and wastewater treatment plant (WWTP) samples, were used to assess the primer efficiency and the community structures of anammox bacteria retrieved by 16S ribosomal RNA (rRNA) and the functional genes. Abundances of hzsB gene of anammox bacteria in South China Sea (SCS) samples were significantly correlated with 16S rRNA gene by qPCR method. And hzsB and hzsC gene primer pair hzsB364f-hzsB640r and hzsC745f-hzsC862r in combination with anammox bacterial 16S rRNA gene primers were recommended for quantifying anammox bacteria. Congruent with 16S rRNA gene-based community study, functional gene hzsB could also delineate the coastal-ocean distributing pattern, and seawater depth was positively associated with the diversity and abundance of anammox bacteria from shallow- to deep-sea. Both hzsC and ccsA genes could differentiate marine samples between deep and shallow groups of the Scalindua sp. clades. As for WWTP samples, non-Scalindua anammox bacteria reflected by hzsB, hzsC, ccsA, and ccsB gene-based libraries showed a similar distribution pattern with that by 16S rRNA gene. NH4+ and NH4+/Σ(NO3- + NO2-) positively correlated with anammox bacteria gene diversity, but organic matter contents correlated negatively with anammox bacteria gene diversity in SCS. Salinity was positively associated with diversity indices of hzsC and ccsB gene-harboring anammox bacteria communities and could potentially differentiate the distribution patterns between shallow- and deep-sea sediment samples. SCS surface sediments harbored considerably diverse community of Scalindua. A new Mai Po clade representing coastal estuary wetland anammox bacteria group based on 16S rRNA gene phylogeny is proposed. Existence of anammox bacteria within wider coverage of genera in Mai Po wetland indicates this unique niche is very complex, and species of anammox bacteria are niche-specific with different physiological properties towards substrates competing and chemical tolerance capability.
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40
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Membrane-bound electron transport systems of an anammox bacterium: A complexome analysis. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2016; 1857:1694-704. [DOI: 10.1016/j.bbabio.2016.07.006] [Citation(s) in RCA: 61] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2016] [Revised: 07/14/2016] [Accepted: 07/19/2016] [Indexed: 11/24/2022]
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Achberger AM, Christner BC, Michaud AB, Priscu JC, Skidmore ML, Vick-Majors TJ. Microbial Community Structure of Subglacial Lake Whillans, West Antarctica. Front Microbiol 2016; 7:1457. [PMID: 27713727 PMCID: PMC5032586 DOI: 10.3389/fmicb.2016.01457] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Accepted: 08/31/2016] [Indexed: 11/13/2022] Open
Abstract
Subglacial Lake Whillans (SLW) is located beneath ∼800 m of ice on the Whillans Ice Stream in West Antarctica and was sampled in January of 2013, providing the first opportunity to directly examine water and sediments from an Antarctic subglacial lake. To minimize the introduction of surface contaminants to SLW during its exploration, an access borehole was created using a microbiologically clean hot water drill designed to reduce the number and viability of microorganisms in the drilling water. Analysis of 16S rRNA genes (rDNA) amplified from samples of the drilling and borehole water allowed an evaluation of the efficacy of this approach and enabled a confident assessment of the SLW ecosystem inhabitants. Based on an analysis of 16S rDNA and rRNA (i.e., reverse-transcribed rRNA molecules) data, the SLW community was found to be bacterially dominated and compositionally distinct from the assemblages identified in the drill system. The abundance of bacteria (e.g., Candidatus Nitrotoga, Sideroxydans, Thiobacillus, and Albidiferax) and archaea (Candidatus Nitrosoarchaeum) related to chemolithoautotrophs was consistent with the oxidation of reduced iron, sulfur, and nitrogen compounds having important roles as pathways for primary production in this permanently dark ecosystem. Further, the prevalence of Methylobacter in surficial lake sediments combined with the detection of methanogenic taxa in the deepest sediment horizons analyzed (34–36 cm) supported the hypothesis that methane cycling occurs beneath the West Antarctic Ice Sheet. Large ratios of rRNA to rDNA were observed for several operational taxonomic units abundant in the water column and sediments (e.g., Albidiferax, Methylobacter, Candidatus Nitrotoga, Sideroxydans, and Smithella), suggesting a potentially active role for these taxa in the SLW ecosystem. Our findings are consistent with chemosynthetic microorganisms serving as the ecological foundation in this dark subsurface environment, providing new organic matter that sustains a microbial ecosystem beneath the West Antarctic Ice Sheet.
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Affiliation(s)
- Amanda M Achberger
- Department of Biological Sciences, Louisiana State University, Baton Rouge LA, USA
| | - Brent C Christner
- Department of Biological Sciences, Louisiana State University, Baton RougeLA, USA; Department of Microbiology and Cell Science, University of Florida, GainesvilleFL, USA; Biodiversity Institute, University of Florida, GainesvilleFL, USA
| | - Alexander B Michaud
- Department of Land Resources and Environmental Science, Montana State University, Bozeman MT, USA
| | - John C Priscu
- Department of Land Resources and Environmental Science, Montana State University, Bozeman MT, USA
| | - Mark L Skidmore
- Department of Earth Sciences, Montana State University, Bozeman MT, USA
| | - Trista J Vick-Majors
- Department of Land Resources and Environmental Science, Montana State University, Bozeman MT, USA
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Metatranscriptomics reveals the molecular mechanism of large granule formation in granular anammox reactor. Sci Rep 2016; 6:28327. [PMID: 27319320 PMCID: PMC4913261 DOI: 10.1038/srep28327] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2015] [Accepted: 06/02/2016] [Indexed: 11/09/2022] Open
Abstract
Granules enriched with anammox bacteria are essential in enhancing the treatment of ammonia-rich wastewater, but little is known about how anammox bacteria grow and multiply inside granules. Here, we combined metatranscriptomics, quantitative PCR and 16S rRNA gene sequencing to study the changes in community composition, metabolic gene content and gene expression in a granular anammox reactor with the objective of understanding the molecular mechanism of anammox growth and multiplication that led to formation of large granules. Size distribution analysis revealed the spatial distribution of granules in which large granules having higher abundance of anammox bacteria (genus Brocadia) dominated the bottom biomass. Metatranscriptomics analysis detected all the essential transcripts for anammox metabolism. During the later stage of reactor operation, higher expression of ammonia and nitrite transport proteins and key metabolic enzymes mainly in the bottom large granules facilitated anammox bacteria activity. The high activity resulted in higher growth and multiplication of anammox bacteria and expanded the size of the granules. This conceptual model for large granule formation proposed here may assist in the future design of anammox processes for mainstream wastewater treatment.
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43
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Oshiki M, Ali M, Shinyako-Hata K, Satoh H, Okabe S. Hydroxylamine-dependent anaerobic ammonium oxidation (anammox) by “Candidatus
Brocadia sinica”. Environ Microbiol 2016; 18:3133-43. [DOI: 10.1111/1462-2920.13355] [Citation(s) in RCA: 78] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2014] [Accepted: 04/21/2016] [Indexed: 12/01/2022]
Affiliation(s)
- Mamoru Oshiki
- Department of Civil Engineering; National Institute of Technology, Nagaoka College; Nagaoka Niigata 940-8532 Japan
| | - Muhammad Ali
- Division of Environmental Engineering, Faculty of Engineering; Hokkaido University; North-13, West-8 Sapporo Hokkaido 060-8628 Japan
- Water Desalination and Reuse Center (WDRC), Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology (KAUST),Thuwal; 23955-6900 Saudi Arabia
| | - Kaori Shinyako-Hata
- Tokyo Engineering Consultants Co., Ltd., Kasumigaseki, Chioyadaku, Tokyo 100-0013, Japan
| | - Hisashi Satoh
- Division of Environmental Engineering, Faculty of Engineering; Hokkaido University; North-13, West-8 Sapporo Hokkaido 060-8628 Japan
| | - Satoshi Okabe
- Division of Environmental Engineering, Faculty of Engineering; Hokkaido University; North-13, West-8 Sapporo Hokkaido 060-8628 Japan
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Perez-Garcia O, Lear G, Singhal N. Metabolic Network Modeling of Microbial Interactions in Natural and Engineered Environmental Systems. Front Microbiol 2016; 7:673. [PMID: 27242701 PMCID: PMC4870247 DOI: 10.3389/fmicb.2016.00673] [Citation(s) in RCA: 76] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2016] [Accepted: 04/25/2016] [Indexed: 12/14/2022] Open
Abstract
We review approaches to characterize metabolic interactions within microbial communities using Stoichiometric Metabolic Network (SMN) models for applications in environmental and industrial biotechnology. SMN models are computational tools used to evaluate the metabolic engineering potential of various organisms. They have successfully been applied to design and optimize the microbial production of antibiotics, alcohols and amino acids by single strains. To date however, such models have been rarely applied to analyze and control the metabolism of more complex microbial communities. This is largely attributed to the diversity of microbial community functions, metabolisms, and interactions. Here, we firstly review different types of microbial interaction and describe their relevance for natural and engineered environmental processes. Next, we provide a general description of the essential methods of the SMN modeling workflow including the steps of network reconstruction, simulation through Flux Balance Analysis (FBA), experimental data gathering, and model calibration. Then we broadly describe and compare four approaches to model microbial interactions using metabolic networks, i.e., (i) lumped networks, (ii) compartment per guild networks, (iii) bi-level optimization simulations, and (iv) dynamic-SMN methods. These approaches can be used to integrate and analyze diverse microbial physiology, ecology and molecular community data. All of them (except the lumped approach) are suitable for incorporating species abundance data but so far they have been used only to model simple communities of two to eight different species. Interactions based on substrate exchange and competition can be directly modeled using the above approaches. However, interactions based on metabolic feedbacks, such as product inhibition and synthropy require extensions to current models, incorporating gene regulation and compounding accumulation mechanisms. SMN models of microbial interactions can be used to analyze complex “omics” data and to infer and optimize metabolic processes. Thereby, SMN models are suitable to capitalize on advances in high-throughput molecular and metabolic data generation. SMN models are starting to be applied to describe microbial interactions during wastewater treatment, in-situ bioremediation, microalgae blooms methanogenic fermentation, and bioplastic production. Despite their current challenges, we envisage that SMN models have future potential for the design and development of novel growth media, biochemical pathways and synthetic microbial associations.
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Affiliation(s)
- Octavio Perez-Garcia
- Department of Civil and Environmental Engineering, University of Auckland Auckland, New Zealand
| | - Gavin Lear
- School of Biological Sciences, The University of Auckland Auckland, New Zealand
| | - Naresh Singhal
- Department of Civil and Environmental Engineering, University of Auckland Auckland, New Zealand
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Guo J, Peng Y, Fan L, Zhang L, Ni BJ, Kartal B, Feng X, Jetten MSM, Yuan Z. Metagenomic analysis of anammox communities in three different microbial aggregates. Environ Microbiol 2016; 18:2979-93. [DOI: 10.1111/1462-2920.13132] [Citation(s) in RCA: 102] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2015] [Revised: 11/07/2015] [Accepted: 11/11/2015] [Indexed: 01/16/2023]
Affiliation(s)
- Jianhua Guo
- Key Laboratory of Beijing for Water Quality Science and Water Environmental Recovery Engineering; Engineering Research Center of Beijing; Beijing University of Technology; Beijing 100124 China
- Advanced Water Management Centre (AWMC); The University of Queensland; St Lucia Brisbane QLD 4072 Australia
| | - Yongzhen Peng
- Key Laboratory of Beijing for Water Quality Science and Water Environmental Recovery Engineering; Engineering Research Center of Beijing; Beijing University of Technology; Beijing 100124 China
| | - Lu Fan
- Advanced Water Management Centre (AWMC); The University of Queensland; St Lucia Brisbane QLD 4072 Australia
| | - Liang Zhang
- Key Laboratory of Beijing for Water Quality Science and Water Environmental Recovery Engineering; Engineering Research Center of Beijing; Beijing University of Technology; Beijing 100124 China
| | - Bing-Jie Ni
- Advanced Water Management Centre (AWMC); The University of Queensland; St Lucia Brisbane QLD 4072 Australia
| | - Boran Kartal
- Microbiology, IWWR; Faculty of Science; Radboud University Nijmegen; Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
- Department of Biochemistry and Microbiology; Laboratory of Microbiology; Gent University; Gent 9000 Belgium
| | - Xin Feng
- Research Department of Microbiology; Beijing Genomics Institute (BGI)-Shenzhen; Shenzhen China
| | - Mike S. M. Jetten
- Microbiology, IWWR; Faculty of Science; Radboud University Nijmegen; Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Zhiguo Yuan
- Key Laboratory of Beijing for Water Quality Science and Water Environmental Recovery Engineering; Engineering Research Center of Beijing; Beijing University of Technology; Beijing 100124 China
- Advanced Water Management Centre (AWMC); The University of Queensland; St Lucia Brisbane QLD 4072 Australia
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Oshiki M, Satoh H, Okabe S. Ecology and physiology of anaerobic ammonium oxidizing bacteria. Environ Microbiol 2016; 18:2784-96. [DOI: 10.1111/1462-2920.13134] [Citation(s) in RCA: 235] [Impact Index Per Article: 29.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2014] [Revised: 11/08/2015] [Accepted: 11/13/2015] [Indexed: 11/28/2022]
Affiliation(s)
- Mamoru Oshiki
- Department of Civil Engineering National Institute of Technology Nagaoka College 888 Nishikatakaimachi Nagaoka Niigata 940‐0834 Japan
| | - Hisashi Satoh
- Division of Environmental Engineering Faculty of Engineering Hokkaido University North 13, West‐8 Sapporo Hokkaido 060‐8628 Japan
| | - Satoshi Okabe
- Division of Environmental Engineering Faculty of Engineering Hokkaido University North 13, West‐8 Sapporo Hokkaido 060‐8628 Japan
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Shen LD, Wu HS, Gao ZQ, Ruan YJ, Xu XH, Li J, Ma SJ, Zheng PH. Evidence for anaerobic ammonium oxidation process in freshwater sediments of aquaculture ponds. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2016; 23:1344-1352. [PMID: 26362637 DOI: 10.1007/s11356-015-5356-z] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2015] [Accepted: 09/01/2015] [Indexed: 06/05/2023]
Abstract
The anaerobic ammonium oxidation (anammox) process, which can simultaneously remove ammonium and nitrite, both toxic to aquatic animals, can be very important to the aquaculture industry. Here, the presence and activity of anammox bacteria in the sediments of four different freshwater aquaculture ponds were investigated by using Illumina-based 16S rRNA gene sequencing, quantitative PCR assays and (15)N stable isotope measurements. Different genera of anammox bacteria were detected in the examined pond sediments, including Candidatus Brocadia, Candidatus Kuenenia and Candidatus Anammoxoglobus, with Candidatus Brocadia being the dominant anammox genus. Quantitative PCR of hydrazine synthase genes showed that the abundance of anammox bacteria ranged from 5.6 × 10(4) to 2.1 × 10(5) copies g(-1) sediment in the examined ponds. The potential anammox rates ranged between 3.7 and 19.4 nmol N2 g(-1) sediment day(-1), and the potential denitrification rates varied from 107.1 to 300.3 nmol N2 g(-1) sediment day(-1). The anammox process contributed 1.2-15.3% to sediment dinitrogen gas production, while the remainder would be due to denitrification. It is estimated that a total loss of 2.1-10.9 g N m(-2) per year could be attributed to the anammox process in the examined ponds, suggesting that this process could contribute to nitrogen removal in freshwater aquaculture ponds.
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Affiliation(s)
- Li-dong Shen
- Jiangsu Key Laboratory of Agricultural Meteorology, Collaborative Innovation Center on Forecast and Evaluation of Meteorological Disasters, College of Applied Meteorology, Nanjing University of Information Science and Technology, Nanjing, 210044, China
- Department of Agricultural Resource and Environment, College of Applied Meteorology, Nanjing University of Information Science and Technology, Nanjing, 210044, China
| | - Hong-sheng Wu
- Jiangsu Key Laboratory of Agricultural Meteorology, Collaborative Innovation Center on Forecast and Evaluation of Meteorological Disasters, College of Applied Meteorology, Nanjing University of Information Science and Technology, Nanjing, 210044, China
- Department of Agricultural Resource and Environment, College of Applied Meteorology, Nanjing University of Information Science and Technology, Nanjing, 210044, China
| | - Zhi-qiu Gao
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Science, Beijing, China.
- College of Geophysics and Remote Sensing, Nanjing University of Information Science and Technology, Nanjing, 210044, China.
| | - Yun-jie Ruan
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-systems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China
| | - Xiang-hua Xu
- Jiangsu Key Laboratory of Agricultural Meteorology, Collaborative Innovation Center on Forecast and Evaluation of Meteorological Disasters, College of Applied Meteorology, Nanjing University of Information Science and Technology, Nanjing, 210044, China
- Department of Agricultural Resource and Environment, College of Applied Meteorology, Nanjing University of Information Science and Technology, Nanjing, 210044, China
| | - Ji Li
- Department of Agricultural Resource and Environment, College of Applied Meteorology, Nanjing University of Information Science and Technology, Nanjing, 210044, China
| | - Shi-jie Ma
- Department of Agricultural Resource and Environment, College of Applied Meteorology, Nanjing University of Information Science and Technology, Nanjing, 210044, China
| | - Pei-hui Zheng
- Department of Agricultural Resource and Environment, College of Applied Meteorology, Nanjing University of Information Science and Technology, Nanjing, 210044, China
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454-Pyrosequencing Analysis of Bacterial Communities from Autotrophic Nitrogen Removal Bioreactors Utilizing Universal Primers: Effect of Annealing Temperature. BIOMED RESEARCH INTERNATIONAL 2015; 2015:892013. [PMID: 26421306 PMCID: PMC4573432 DOI: 10.1155/2015/892013] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Accepted: 02/26/2015] [Indexed: 02/03/2023]
Abstract
Identification of anaerobic ammonium oxidizing (anammox) bacteria by molecular tools aimed at the evaluation of bacterial diversity in autotrophic nitrogen removal systems is limited by the difficulty to design universal primers for the Bacteria domain able to amplify the anammox 16S rRNA genes. A metagenomic analysis (pyrosequencing) of total bacterial diversity including anammox population in five autotrophic nitrogen removal technologies, two bench-scale models (MBR and Low Temperature CANON) and three full-scale bioreactors (anammox, CANON, and DEMON), was successfully carried out by optimization of primer selection and PCR conditions (annealing temperature). The universal primer 530F was identified as the best candidate for total bacteria and anammox bacteria diversity coverage. Salt-adjusted optimum annealing temperature of primer 530F was calculated (47°C) and hence a range of annealing temperatures of 44–49°C was tested. Pyrosequencing data showed that annealing temperature of 45°C yielded the best results in terms of species richness and diversity for all bioreactors analyzed.
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Gonzalez-Gil G, Sougrat R, Behzad AR, Lens PNL, Saikaly PE. Microbial community composition and ultrastructure of granules from a full-scale anammox reactor. MICROBIAL ECOLOGY 2015; 70:118-31. [PMID: 25501888 DOI: 10.1007/s00248-014-0546-7] [Citation(s) in RCA: 76] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2014] [Accepted: 11/27/2014] [Indexed: 05/10/2023]
Abstract
Granules in anammox reactors contain besides anammox bacteria other microbial communities whose identity and relationship with the anammox bacteria are not well understood. High calcium concentrations are often supplied to anammox reactors to obtain sufficient bacterial aggregation and biomass retention. The aim of this study was to provide the first characterization of bacterial and archaeal communities in anammox granules from a full-scale anammox reactor and to explore on the possible role of calcium in such aggregates. High magnification imaging using backscattered electrons revealed that anammox bacteria may be embedded in calcium phosphate precipitates. Pyrosequencing of 16S rRNA gene fragments showed, besides anammox bacteria (Brocadiacea, 32%), substantial numbers of heterotrophic bacteria Ignavibacteriacea (18%) and Anaerolinea (7%) along with heterotrophic denitrifiers Rhodocyclacea (9%), Comamonadacea (3%), and Shewanellacea (3%) in the granules. It is hypothesized that these bacteria may form a network in which heterotrophic denitrifiers cooperate to achieve a well-functioning denitrification system as they can utilize the nitrate intrinsically produced by the anammox reaction. This network may provide a niche for the proliferation of archaea. Hydrogenotrophic methananogens, which scavenge the key fermentation product H2, were the most abundant archaea detected. Cells resembling the polygon-shaped denitrifying methanotroph Candidatus Methylomirabilis oxyfera were observed by electron microscopy. It is hypothesized that the anammox process in a full-scale reactor triggers various reactions overall leading to efficient denitrification and a sink of carbon as biomass in anammox granules.
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Affiliation(s)
- Graciela Gonzalez-Gil
- Water Desalination and Reuse Center, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia,
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Draft Genome Sequence of an Anaerobic Ammonium-Oxidizing Bacterium, "Candidatus Brocadia sinica". GENOME ANNOUNCEMENTS 2015; 3:3/2/e00267-15. [PMID: 25883286 PMCID: PMC4400429 DOI: 10.1128/genomea.00267-15] [Citation(s) in RCA: 66] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
A draft genome sequence of an anaerobic ammonium-oxidizing (anammox) bacterium, “Candidatus Brocadia sinica,” was determined by pyrosequencing and by screening a fosmid library. A 4.07-Mb genome sequence comprising 3 contigs was assembled, in which 3,912 gene-coding regions, 47 tRNAs, and a single rrn operon were annotated.
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