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Gastineau R, Dąbek P, Mianowicz K, Stoyanova V, Krawcewicz A, Abramowski T. Complete mitochondrial genome of the abyssal coral Abyssoprimnoagemina Cairns, 2015 (Octocorallia, Primnoidae) from the Clarion-Clipperton Zone, Pacific Ocean. Zookeys 2023; 1183:81-98. [PMID: 37953748 PMCID: PMC10632777 DOI: 10.3897/zookeys.1183.109000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Accepted: 10/09/2023] [Indexed: 11/14/2023] Open
Abstract
The Clarion-Clipperton Zone (CCZ) in the tropical East Pacific is a region of interest for deep-sea mining due to its underwater deposits of polymetallic nodules containing economically important metals such as nickel, copper, and cobalt. It is also a region of extensive baseline studies aiming to describe the state of the environment, including the biodiversity of the benthic fauna. An abundant component of the abyssal plain ecosystem consists of sessile fauna which encrusts polymetallic nodules and are vulnerable to potential impacts arising from exploitation activities, particularly removal of substrate. Therefore, this fauna is often considered to have key species whose genetic connectivity should be studied to assess their ecological resilience. One such species is Abyssoprimnoagemina Cairns, 2015, a deep-sea coral from the CCZ whose presence in the Interoceanmetal Joint Organization (IOM) claim area has been confirmed during samplings. In this study, we used next-generation sequencing (NGS) to obtain the 18S nuclear rRNA gene and the complete mitochondrial genome of A.gemina from IOM exploration area. The mitogenome is 18,825 bp long and encodes for 14 protein coding genes, 2 rRNAs, and a single tRNA. The two phylogeny reconstructions derived from these data confirm previous studies and display A.gemina within a highly supported cluster of seven species whose mitogenomes are all colinear and of comparable size. This study also demonstrates the suitability of NGS for DNA barcoding of the benthic megafauna of the CCZ, which could become part of the IOM protocol for the assessment of population diversity and genetic connectivity in its claim area.
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Affiliation(s)
- Romain Gastineau
- Institute of Marine and Environmental Sciences, University of Szczecin, ul. Mickiewicza 16a, Szczecin, 70-383, PolandUniversity of SzczecinSzczecinPoland
| | - Przemysław Dąbek
- Institute of Marine and Environmental Sciences, University of Szczecin, ul. Mickiewicza 16a, Szczecin, 70-383, PolandUniversity of SzczecinSzczecinPoland
| | - Kamila Mianowicz
- Interoceanmetal Joint Organization, ul. Cyryla i Metodego 9-9A, Szczecin, 71-541, PolandInteroceanmetal Joint OrganizationSzczecinPoland
| | - Valcana Stoyanova
- Interoceanmetal Joint Organization, ul. Cyryla i Metodego 9-9A, Szczecin, 71-541, PolandInteroceanmetal Joint OrganizationSzczecinPoland
| | - Artur Krawcewicz
- Interoceanmetal Joint Organization, ul. Cyryla i Metodego 9-9A, Szczecin, 71-541, PolandInteroceanmetal Joint OrganizationSzczecinPoland
| | - Tomasz Abramowski
- Interoceanmetal Joint Organization, ul. Cyryla i Metodego 9-9A, Szczecin, 71-541, PolandInteroceanmetal Joint OrganizationSzczecinPoland
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Li B, Jia Y, Fan Z, Li K, Shi X. Impact of the Mining Process on the Near-Seabed Environment of a Polymetallic Nodule Area: A Field Simulation Experiment in a Western Pacific Area. SENSORS (BASEL, SWITZERLAND) 2023; 23:8110. [PMID: 37836940 PMCID: PMC10575461 DOI: 10.3390/s23198110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 09/22/2023] [Accepted: 09/26/2023] [Indexed: 10/15/2023]
Abstract
With the consumption of terrestrial metal resources, deep-sea polymetallic nodule minerals have been widely exploited around the world. Therefore, the environmental impact of deep-sea polymetallic nodule mining cannot be ignored. In this study, for the first time, a field disturbance and observation device, integrated with multiple sensors, is used to simulate the disturbance process of mining on seabed sediments in the polymetallic nodule area of the western Pacific Ocean at a depth of 5700 m. The impact of the process of stroking and lifting on the bottom sediment in the polymetallic nodule area is 30 times higher than that caused by the waves or the current. The time for turbidity to return to normal after the increase is about 30 min, and the influence distance of a disturbance to the bottom bed on turbidity is about 126 m. The time it takes for density to return to normal is about four hours, and the influence is about 1000 m. At the same time, the resuspension of the bottom sediment leads to an increase in density anomaly and salinity. Moreover, suspended sediments rich in metal ions may react with dissolved oxygen in water, resulting in a decrease in the dissolved oxygen content and an increase in ORP. During the observation period, the phenomenon of a deep-sea reciprocating current is found, which may cause the suspended sediment generated by the continuous operation of the mining vehicle to produce suspended sediment clouds in the water near the bottom of the mining area. This could lead to the continuous increase in nutrients in the water near the bottom of the mining area and the continuous reduction in dissolved oxygen, which will have a significant impact on the local ecological environment. Therefore, the way mining vehicles dig and wash in water bodies could have a marked impact on the marine environment. We suggest adopting the technology of suction and ore separation on mining ships, as well as bringing the separated sediment back to the land for comprehensive utilization.
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Affiliation(s)
- Bowen Li
- College of Oceanography and Space Information, China University of Petroleum, Qingdao 266580, China;
| | - Yonggang Jia
- Laboratory for Marine Geology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266100, China;
- Shandong Provincial Key Laboratory of Marine Environment and Geological Engineering, Ocean University of China, Qingdao 266100, China; (Z.F.); (K.L.)
| | - Zhihan Fan
- Shandong Provincial Key Laboratory of Marine Environment and Geological Engineering, Ocean University of China, Qingdao 266100, China; (Z.F.); (K.L.)
| | - Kai Li
- Shandong Provincial Key Laboratory of Marine Environment and Geological Engineering, Ocean University of China, Qingdao 266100, China; (Z.F.); (K.L.)
| | - Xuefa Shi
- First Institute of Oceanography, Ministry of Natural Resources (MNR), Qingdao 266061, China
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Pinheiro M, Martins I, Raimundo J, Caetano M, Neuparth T, Santos MM. Stressors of emerging concern in deep-sea environments: microplastics, pharmaceuticals, personal care products and deep-sea mining. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 876:162557. [PMID: 36898539 DOI: 10.1016/j.scitotenv.2023.162557] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2023] [Revised: 02/16/2023] [Accepted: 02/26/2023] [Indexed: 06/18/2023]
Abstract
Although most deep-sea areas are remote in comparison to coastal zones, a growing body of literature indicates that many sensitive ecosystems could be under increased stress from anthropogenic sources. Among the multiple potential stressors, microplastics (MPs), pharmaceuticals and personal care products (PPCPs/PCPs) and the imminent start of commercial deep-sea mining have received increased attention. Here we review recent literature on these emerging stressors in deep-sea environments and discuss cumulative effects with climate change associated variables. Importantly, MPs and PPCPs have been detected in deep-sea waters, organisms and sediments, in some locations in comparable levels to coastal areas. The Atlantic Ocean and the Mediterranean Sea are the most studied areas and where higher levels of MPs and PPCPs have been detected. The paucity of data for most other deep-sea ecosystems indicates that many more locations are likely to be contaminated by these emerging stressors, but the absence of studies hampers a better assessment of the potential risk. The main knowledge gaps in the field are identified and discussed, and future research priorities are highlighted to improve hazard and risk assessment.
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Affiliation(s)
- Marlene Pinheiro
- CIIMAR/CIMAR-LA - Interdisciplinary Centre of Marine and Environmental Research, Avenida General Norton de Matos S/N, 4450-208 Matosinhos, Portugal; FCUP - Department of Biology, Faculty of Sciences, University of Porto, Rua do Campo Alegre S/N, 4169-007 Porto, Portugal
| | - Irene Martins
- CIIMAR/CIMAR-LA - Interdisciplinary Centre of Marine and Environmental Research, Avenida General Norton de Matos S/N, 4450-208 Matosinhos, Portugal
| | - Joana Raimundo
- CIIMAR/CIMAR-LA - Interdisciplinary Centre of Marine and Environmental Research, Avenida General Norton de Matos S/N, 4450-208 Matosinhos, Portugal; IPMA - Portuguese Institute for Sea and Atmosphere, Avenida Alfredo Magalhães Ramalho 6, 1495-165 Algés, Portugal
| | - Miguel Caetano
- CIIMAR/CIMAR-LA - Interdisciplinary Centre of Marine and Environmental Research, Avenida General Norton de Matos S/N, 4450-208 Matosinhos, Portugal; IPMA - Portuguese Institute for Sea and Atmosphere, Avenida Alfredo Magalhães Ramalho 6, 1495-165 Algés, Portugal
| | - Teresa Neuparth
- CIIMAR/CIMAR-LA - Interdisciplinary Centre of Marine and Environmental Research, Avenida General Norton de Matos S/N, 4450-208 Matosinhos, Portugal.
| | - Miguel M Santos
- CIIMAR/CIMAR-LA - Interdisciplinary Centre of Marine and Environmental Research, Avenida General Norton de Matos S/N, 4450-208 Matosinhos, Portugal; FCUP - Department of Biology, Faculty of Sciences, University of Porto, Rua do Campo Alegre S/N, 4169-007 Porto, Portugal.
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Effects of Migration and Diffusion of Suspended Sediments on the Seabed Environment during Exploitation of Deep-Sea Polymetallic Nodules. WATER 2022. [DOI: 10.3390/w14132073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
With the increase in demand for metal resources, research on deep-sea polymetallic nodule mining has been reinvigorated, but the problem of its environmental impact cannot be ignored. No matter what method is used for mining, it will disturb the surface sediments of the seabed, thereby increasing the concentration of suspended solid particles and metal ions in the water body, changing the properties of the near-bottom water body and sediments, and affecting biological activity and the living environment. Focusing on the ecological and environmental impacts of deep-sea polymetallic nodule mining, taking as our main subject of focus the dynamic changes in sediments, we investigated the environmental impacts of nodule mining and their relationships with each other. On this basis, certain understandings are summarized relating to the ecological and environmental impacts of deep-sea polymetallic nodule mining, based on changes in the engineering geological properties of sediment, and solutions for current research problems are proposed.
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Brandt MI, Pradillon F, Trouche B, Henry N, Liautard-Haag C, Cambon-Bonavita MA, Cueff-Gauchard V, Wincker P, Belser C, Poulain J, Arnaud-Haond S, Zeppilli D. Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA. Sci Rep 2021; 11:7856. [PMID: 33846371 PMCID: PMC8041860 DOI: 10.1038/s41598-021-86396-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Accepted: 03/15/2021] [Indexed: 02/07/2023] Open
Abstract
Despite representing one of the largest biomes on earth, biodiversity of the deep seafloor is still poorly known. Environmental DNA metabarcoding offers prospects for fast inventories and surveys, yet requires standardized sampling approaches and careful choice of environmental substrate. Here, we aimed to optimize the genetic assessment of prokaryote (16S), protistan (18S V4), and metazoan (18S V1-V2, COI) communities, by evaluating sampling strategies for sediment and aboveground water, deployed simultaneously at one deep-sea site. For sediment, while size-class sorting through sieving had no significant effect on total detected alpha diversity and resolved similar taxonomic compositions at the phylum level for all markers studied, it effectively increased the detection of meiofauna phyla. For water, large volumes obtained from an in situ pump (~ 6000 L) detected significantly more metazoan diversity than 7.5 L collected in sampling boxes. However, the pump being limited by larger mesh sizes (> 20 µm), only captured a fraction of microbial diversity, while sampling boxes allowed access to the pico- and nanoplankton. More importantly, communities characterized by aboveground water samples significantly differed from those characterized by sediment, whatever volume used, and both sample types only shared between 3 and 8% of molecular units. Together, these results underline that sediment sieving may be recommended when targeting metazoans, and aboveground water does not represent an alternative to sediment sampling for inventories of benthic diversity.
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Affiliation(s)
- Miriam I. Brandt
- grid.121334.60000 0001 2097 0141MARBEC, IFREMER, IRD, CNRS, Univ Montpellier, Sète, France
| | - Florence Pradillon
- grid.4825.b0000 0004 0641 9240Centre Brest, Laboratoire Environnement Profond (REM/EEP/LEP), IFREMER, CS10070, 29280 Plouzané, France
| | - Blandine Trouche
- grid.4825.b0000 0004 0641 9240IFREMER, CNRS, Laboratoire de Microbiologie Des Environnements Extrêmes (LM2E), Univ Brest, Plouzané, France
| | - Nicolas Henry
- grid.462844.80000 0001 2308 1657CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, Sorbonne University, 29680 Roscoff, France
| | - Cathy Liautard-Haag
- grid.121334.60000 0001 2097 0141MARBEC, IFREMER, IRD, CNRS, Univ Montpellier, Sète, France
| | - Marie-Anne Cambon-Bonavita
- grid.4825.b0000 0004 0641 9240IFREMER, CNRS, Laboratoire de Microbiologie Des Environnements Extrêmes (LM2E), Univ Brest, Plouzané, France
| | - Valérie Cueff-Gauchard
- grid.4825.b0000 0004 0641 9240IFREMER, CNRS, Laboratoire de Microbiologie Des Environnements Extrêmes (LM2E), Univ Brest, Plouzané, France
| | - Patrick Wincker
- grid.434728.e0000 0004 0641 2997Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ of Évry, Paris-Saclay University, 91057 Evry, France
| | - Caroline Belser
- grid.434728.e0000 0004 0641 2997Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ of Évry, Paris-Saclay University, 91057 Evry, France
| | - Julie Poulain
- grid.434728.e0000 0004 0641 2997Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ of Évry, Paris-Saclay University, 91057 Evry, France
| | - Sophie Arnaud-Haond
- grid.121334.60000 0001 2097 0141MARBEC, IFREMER, IRD, CNRS, Univ Montpellier, Sète, France
| | - Daniela Zeppilli
- grid.4825.b0000 0004 0641 9240Centre Brest, Laboratoire Environnement Profond (REM/EEP/LEP), IFREMER, CS10070, 29280 Plouzané, France
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Laroche O, Kersten O, Smith CR, Goetze E. Environmental DNA surveys detect distinct metazoan communities across abyssal plains and seamounts in the western Clarion Clipperton Zone. Mol Ecol 2020; 29:4588-4604. [PMID: 32452072 PMCID: PMC7754508 DOI: 10.1111/mec.15484] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 05/08/2020] [Accepted: 05/18/2020] [Indexed: 01/13/2023]
Abstract
The deep seafloor serves as a reservoir of biodiversity in the global ocean, with >80% of invertebrates at abyssal depths still undescribed. These diverse and remote deep-sea communities are critically under-sampled and increasingly threatened by anthropogenic impacts, including future polymetallic nodule mining. Using a multigene environmental DNA (eDNA) metabarcoding approach, we characterized metazoan communities sampled from sediments, polymetallic nodules and seawater in the western Clarion Clipperton Zone (CCZ) to test the hypotheses that deep seamounts (a) are species richness hotspots in the abyss, (b) have structurally distinct communities in comparison to other deep-sea habitats, and (c) that seafloor particulate organic carbon (POC) flux and polymetallic nodule density are positively correlated with metazoan diversity. eDNA metabarcoding was effective at characterizing distinct biotas known to occur in association with different abyssal substrate types (e.g., nodule- and sediment-specific fauna), with distinct community composition and few taxa shared across substrates. Seamount faunas had higher overall taxonomic richness, and different community composition and biogeography than adjacent abyssal plains, with seamount communities displaying less connectivity between regions than comparable assemblages on the abyssal plains. Across an estimated gradient of low to moderate POC flux, we find lowest taxon richness at the lowest POC flux, as well as an effect of nodule size on community composition. Our results suggest that while abyssal seamounts are important reservoirs of metazoan diversity in the CCZ, given limited taxonomic overlap between seamount and plains fauna, conservation of seamount assemblages will be insufficient to protect biodiversity and ecosystem function in regions targeted for mining.
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Affiliation(s)
- Olivier Laroche
- Department of OceanographySchool of Ocean and Earth Science and TechnologyUniversity of Hawaii at MānoaHonoluluHIUSA
| | - Oliver Kersten
- Centre for Ecological and Evolutionary SynthesisUniversity of OsloOsloNorway
| | - Craig R. Smith
- Department of OceanographySchool of Ocean and Earth Science and TechnologyUniversity of Hawaii at MānoaHonoluluHIUSA
| | - Erica Goetze
- Department of OceanographySchool of Ocean and Earth Science and TechnologyUniversity of Hawaii at MānoaHonoluluHIUSA
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7
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Laroche O, Kersten O, Smith CR, Goetze E. Environmental DNA surveys detect distinct metazoan communities across abyssal plains and seamounts in the western Clarion Clipperton Zone. Mol Ecol 2020. [PMID: 32452072 DOI: 10.1111/mec.15484[epub] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The deep seafloor serves as a reservoir of biodiversity in the global ocean, with >80% of invertebrates at abyssal depths still undescribed. These diverse and remote deep-sea communities are critically under-sampled and increasingly threatened by anthropogenic impacts, including future polymetallic nodule mining. Using a multigene environmental DNA (eDNA) metabarcoding approach, we characterized metazoan communities sampled from sediments, polymetallic nodules and seawater in the western Clarion Clipperton Zone (CCZ) to test the hypotheses that deep seamounts (a) are species richness hotspots in the abyss, (b) have structurally distinct communities in comparison to other deep-sea habitats, and (c) that seafloor particulate organic carbon (POC) flux and polymetallic nodule density are positively correlated with metazoan diversity. eDNA metabarcoding was effective at characterizing distinct biotas known to occur in association with different abyssal substrate types (e.g., nodule- and sediment-specific fauna), with distinct community composition and few taxa shared across substrates. Seamount faunas had higher overall taxonomic richness, and different community composition and biogeography than adjacent abyssal plains, with seamount communities displaying less connectivity between regions than comparable assemblages on the abyssal plains. Across an estimated gradient of low to moderate POC flux, we find lowest taxon richness at the lowest POC flux, as well as an effect of nodule size on community composition. Our results suggest that while abyssal seamounts are important reservoirs of metazoan diversity in the CCZ, given limited taxonomic overlap between seamount and plains fauna, conservation of seamount assemblages will be insufficient to protect biodiversity and ecosystem function in regions targeted for mining.
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Affiliation(s)
- Olivier Laroche
- Department of Oceanography, School of Ocean and Earth Science and Technology, University of Hawaii at Mānoa, Honolulu, HI, USA
| | - Oliver Kersten
- Centre for Ecological and Evolutionary Synthesis, University of Oslo, Oslo, Norway
| | - Craig R Smith
- Department of Oceanography, School of Ocean and Earth Science and Technology, University of Hawaii at Mānoa, Honolulu, HI, USA
| | - Erica Goetze
- Department of Oceanography, School of Ocean and Earth Science and Technology, University of Hawaii at Mānoa, Honolulu, HI, USA
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