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Wen T, Li JH, Wang Q, Gao YY, Hao GF, Song BA. Thermal imaging: The digital eye facilitates high-throughput phenotyping traits of plant growth and stress responses. Sci Total Environ 2023; 899:165626. [PMID: 37481085 DOI: 10.1016/j.scitotenv.2023.165626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 07/13/2023] [Accepted: 07/16/2023] [Indexed: 07/24/2023]
Abstract
Plant phenotyping is important for plants to cope with environmental changes and ensure plant health. Imaging techniques are perceived as the most critical and reliable tools for studying plant phenotypes. Thermal imaging has opened up new opportunities for nondestructive imaging of plant phenotyping. However, a comprehensive summary of thermal imaging in plant phenotyping is still lacking. Here we discuss the progress and future prospects of thermal imaging for assessing plant growth and stress responses. First, we classify thermal imaging into ground-based and aerial platforms based on their adaptability to different experimental environments (including laboratory, greenhouse, and field). It is convenient to collect phenotypic information of different dimensions. Second, in order to enhance the efficiency of thermal image processing, automatic algorithms based on deep learning are employed instead of traditional manual methods, greatly reducing the time cost of experiments. Considering its ease of implementation, handling and instant response, thermal imaging has been widely used in research on environmental stress, crop yield, and seed vigor. We have found that thermal imaging can detect thermal energy dissipation caused by living organisms (e.g., pests, viruses, bacteria, fungi, and oomycetes), enabling early disease diagnosis. It also recognizes changes leaf surface temperatures resulting from reduced transpiration rates caused by nutrient deficiency, drought, salinity, or freezing. Furthermore, thermal imaging predicts crop yield under different water states and forecasts the viability of dormant seeds after water absorption by monitoring temperature changes in the seeds. This work will assist biologists and agronomists in studying plant phenotypes and serve a guide for breeders to develop high-yielding, stress-tolerant, and superior crops.
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Affiliation(s)
- Ting Wen
- National Key Laboratory of Green Pesticide, State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, Guizhou University, Guiyang 550025, PR China
| | - Jian-Hong Li
- National Key Laboratory of Green Pesticide, State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, Guizhou University, Guiyang 550025, PR China
| | - Qi Wang
- State Key Laboratory of Public Big Data, Guizhou University, Guiyang 550025, PR China.
| | - Yang-Yang Gao
- National Key Laboratory of Green Pesticide, State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, Guizhou University, Guiyang 550025, PR China.
| | - Ge-Fei Hao
- National Key Laboratory of Green Pesticide, State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, Guizhou University, Guiyang 550025, PR China; Key Laboratory of Pesticide & Chemical Biology, Ministry of Education, College of Chemistry, Central China Normal University, Wuhan 430079, China.
| | - Bao-An Song
- National Key Laboratory of Green Pesticide, State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, Guizhou University, Guiyang 550025, PR China
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You H, Zhou M, Zhang J, Peng W, Sun C. Sugarcane nitrogen nutrition estimation with digital images and machine learning methods. Sci Rep 2023; 13:14939. [PMID: 37697060 PMCID: PMC10495321 DOI: 10.1038/s41598-023-42190-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Accepted: 09/06/2023] [Indexed: 09/13/2023] Open
Abstract
The color and texture characteristics of crops can reflect their nitrogen (N) nutrient status and help optimize N fertilizer management. This study conducted a one-year field experiment to collect sugarcane leaf images at tillering and elongation stages using a commercial digital camera and extract leaf image color feature (CF) and texture feature (TF) parameters using digital image processing techniques. By analyzing the correlation between leaf N content and feature parameters, feature dimensionality reduction was performed using principal component analysis (PCA), and three regression methods (multiple linear regression; MLR, random forest regression; RF, stacking fusion model; SFM) were used to construct N content estimation models based on different image feature parameters. All models were built using five-fold cross-validation and grid search to verify the model performance and stability. The results showed that the models based on color-texture integrated principal component features (C-T-PCA) outperformed the single-feature models based on CF or TF. Among them, SFM had the highest accuracy for the validation dataset with the model coefficient of determination (R2) of 0.9264 for the tillering stage and 0.9111 for the elongation stage, with the maximum improvement of 9.85% and 8.91%, respectively, compared with the other tested models. In conclusion, the SFM framework based on C-T-PCA combines the advantages of multiple models to enhance the model performance while enhancing the anti-interference and generalization capabilities. Combining digital image processing techniques and machine learning facilitates fast and nondestructive estimation of crop N-substance nutrition.
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Affiliation(s)
- Hui You
- College of Mechanics, Guangxi University, 100 East University Road, Nanning, 530004, Guangxi, China
| | - Muchen Zhou
- College of Mechanics, Guangxi University, 100 East University Road, Nanning, 530004, Guangxi, China
| | - Junxiang Zhang
- Guangxi Vocational University of Agriculture, No. 249, East Daxue Road, Nanning City, 530007, Guangxi, China
| | - Wei Peng
- College of Mechanics, Guangxi University, 100 East University Road, Nanning, 530004, Guangxi, China
| | - Cuimin Sun
- College of Computer and Electronic Information, Guangxi University, 100 East University Road, Nanning, 530004, Guangxi, China.
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Lin Y, Li S, Duan S, Ye Y, Li B, Li G, Lyv D, Jin L, Bian C, Liu J. Methodological evolution of potato yield prediction: a comprehensive review. Front Plant Sci 2023; 14:1214006. [PMID: 37564384 PMCID: PMC10410453 DOI: 10.3389/fpls.2023.1214006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Accepted: 07/06/2023] [Indexed: 08/12/2023]
Abstract
Timely and accurate prediction of crop yield is essential for increasing crop production, estimating planting insurance, and improving trade benefits. Potato (Solanum tuberosum L.) is a staple food in many parts of the world and improving its yield is necessary to ensure food security and promote related industries. We conducted a comprehensive literature survey to demonstrate methodological evolution of predicting potato yield. Publications on predicting potato yield based on methods of remote sensing (RS), crop growth model (CGM), and yield limiting factor (LF) were reviewed. RS, especially satellite-based RS, is crucial in potato yield prediction and decision support over large farm areas. In contrast, CGM are often utilized to optimize management measures and address climate change. Currently, combined with the advantages of low cost and easy operation, unmanned aerial vehicle (UAV) RS combined with artificial intelligence (AI) show superior potential for predicting potato yield in precision management of large-scale farms. However, studies on potato yield prediction are still limited in the number of varieties and field sample size. In the future, it is critical to employ time-series data from multiple sources for a wider range of varieties and large field sample sizes. This study aims to provide a comprehensive review of the progress in potato yield prediction studies and to provide a theoretical reference for related research on potato.
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Affiliation(s)
- Yongxin Lin
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
- College of Agronomy and Biotechnology, Southwest University, Chongqing, China
| | - Shuang Li
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Shaoguang Duan
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Yanran Ye
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Bo Li
- Seeds Development, Syngenta Jealott’s Hill International Research Centre, Bracknell, United Kingdom
| | - Guangcun Li
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Dianqiu Lyv
- College of Agronomy and Biotechnology, Southwest University, Chongqing, China
| | - Liping Jin
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Chunsong Bian
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jiangang Liu
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
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Abebe AM, Kim Y, Kim J, Kim SL, Baek J. Image-Based High-Throughput Phenotyping in Horticultural Crops. Plants (Basel) 2023; 12:2061. [PMID: 37653978 PMCID: PMC10222289 DOI: 10.3390/plants12102061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 05/12/2023] [Accepted: 05/18/2023] [Indexed: 09/02/2023]
Abstract
Plant phenotyping is the primary task of any plant breeding program, and accurate measurement of plant traits is essential to select genotypes with better quality, high yield, and climate resilience. The majority of currently used phenotyping techniques are destructive and time-consuming. Recently, the development of various sensors and imaging platforms for rapid and efficient quantitative measurement of plant traits has become the mainstream approach in plant phenotyping studies. Here, we reviewed the trends of image-based high-throughput phenotyping methods applied to horticultural crops. High-throughput phenotyping is carried out using various types of imaging platforms developed for indoor or field conditions. We highlighted the applications of different imaging platforms in the horticulture sector with their advantages and limitations. Furthermore, the principles and applications of commonly used imaging techniques, visible light (RGB) imaging, thermal imaging, chlorophyll fluorescence, hyperspectral imaging, and tomographic imaging for high-throughput plant phenotyping, are discussed. High-throughput phenotyping has been widely used for phenotyping various horticultural traits, which can be morphological, physiological, biochemical, yield, biotic, and abiotic stress responses. Moreover, the ability of high-throughput phenotyping with the help of various optical sensors will lead to the discovery of new phenotypic traits which need to be explored in the future. We summarized the applications of image analysis for the quantitative evaluation of various traits with several examples of horticultural crops in the literature. Finally, we summarized the current trend of high-throughput phenotyping in horticultural crops and highlighted future perspectives.
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Affiliation(s)
| | | | | | | | - Jeongho Baek
- Department of Agricultural Biotechnology, National Institute of Agricultural Science, Rural Development Administration, Jeonju 54874, Republic of Korea
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Sun C, Zhou J, Ma Y, Xu Y, Pan B, Zhang Z. A review of remote sensing for potato traits characterization in precision agriculture. Front Plant Sci 2022; 13:871859. [PMID: 35923874 PMCID: PMC9339983 DOI: 10.3389/fpls.2022.871859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 06/29/2022] [Indexed: 06/15/2023]
Abstract
Potato is one of the most significant food crops globally due to its essential role in the human diet. The growing demand for potato, coupled with severe environmental losses caused by extensive farming activities, implies the need for better crop protection and management practices. Precision agriculture is being well recognized as the solution as it deals with the management of spatial and temporal variability to improve agricultural returns and reduce environmental impact. As the initial step in precision agriculture, the traditional methods of crop and field characterization require a large input in labor, time, and cost. Recent developments in remote sensing technologies have facilitated the process of monitoring crops and quantifying field variations. Successful applications have been witnessed in the area of precision potato farming. Thus, this review reports the current knowledge on the applications of remote sensing technologies in precision potato trait characterization. We reviewed the commonly used imaging sensors and remote sensing platforms with the comparisons of their strengths and limitations and summarized the main applications of the remote sensing technologies in potato. As a result, this review could update potato agronomists and farmers with the latest approaches and research outcomes, as well as provide a selective list for those who have the intentions to apply remote sensing technologies to characterize potato traits for precision agriculture.
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Affiliation(s)
- Chen Sun
- Biological Systems Engineering, University of Wisconsin-Madison, Madison, WI, United States
- Key Laboratory of Spectral Imaging Technology, Xi’an Institute of Optics and Precision Mechanics, Xi’an, China
| | - Jing Zhou
- Biological Systems Engineering, University of Wisconsin-Madison, Madison, WI, United States
| | - Yuchi Ma
- Biological Systems Engineering, University of Wisconsin-Madison, Madison, WI, United States
| | - Yijia Xu
- Biological Systems Engineering, University of Wisconsin-Madison, Madison, WI, United States
| | - Bin Pan
- School of Statistics and Data Science, Nankai University, Tianjin, China
| | - Zhou Zhang
- Biological Systems Engineering, University of Wisconsin-Madison, Madison, WI, United States
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Galal H, Elsayed S, Allam A, Farouk M. Indirect Quantitative Analysis of Biochemical Parameters in Banana Using Spectral Reflectance Indices Combined with Machine Learning Modeling. Horticulturae 2022; 8:438. [DOI: 10.3390/horticulturae8050438] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The primary issues in collecting biochemical information in a large area using chemical laboratory procedures are low throughput, hard work, time-consuming, and requiring several samples. Thus, real-time and precise estimation of biochemical variables of various fruits using a proximal remote sensing based on spectral reflectance is critical for harvest time, artificial ripening, and food processing, which might be beneficial economically and ecologically. The main goal of this study was to assess the biochemical parameters of banana fruits such as chlorophyll a (Chl a), chlorophyll b (Chl b), respiration rate, total soluble solids (TSS), and firmness using published and newly developed spectral reflectance indices (SRIs), integrated with machine learning modeling (Artificial Neural Networks; ANN and support vector machine regression; SVMR) at different ripening degrees. The results demonstrated that there were evident and significant differences in values of SRIs at different ripening degrees, which may be attributed to the large variations in values of biochemical parameters. The newly developed two-band SRIs are more effective at measuring different biochemical parameters. The SRIs that were extracted from the visible (VIS), near-infrared (NIR), and their combination showed better R2 with biochemical parameters. SRIs combined with ANN and SVMR would be an effective method for estimating five biochemical parameters in the calibration (Cal.) and validation (Val.) datasets with acceptable accuracy. The ANN-TSS-SRI-13 model was built to determine TSS with greater performance expectations (R2 = 1.00 and 0.97 for Cal. and Val., respectively). Furthermore, the model ANN-Firmness-SRI-15 was developed for determining firmness, and it performed better (R2 = 1.00 and 0.98 for Cal. and Val., respectively). In conclusion, this study revealed that SRIs and a combination approach of ANN and SVMR models would be a useful and excellent tool for estimating the biochemical characteristics of banana fruits.
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