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Liu H, Agar OT, Imran A, Barrow CJ, Dunshea FR, Suleria HAR. LC-ESI-QTOF-MS/MS characterization of phenolic compounds in Australian native passion fruits and their potential antioxidant activities. Food Sci Nutr 2024; 12:2455-2472. [PMID: 38628172 PMCID: PMC11016391 DOI: 10.1002/fsn3.3928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 12/14/2023] [Accepted: 12/15/2023] [Indexed: 04/19/2024] Open
Abstract
Passion fruits, renowned globally for their polyphenolic content and associated health benefits, have enjoyed growing attention from consumers and producers alike. While global cultivar development progresses, Australia has pioneered several native cultivars tailored for its distinct planting conditions. Despite their cultivation, comprehensive studies on the phenolic profiles and antioxidant capacities of these Australian-native passion fruits are notably lacking. This study aims to investigate and compare the polyphenolic content present in the by-products, which are peel (L), and consumable portions, which are the pulp and seeds (P), of four indigenous cultivars: 'Misty Gem' (MG), 'Flamengo' (FG), 'Sweetheart' (SW), and 'Panama' (SH). Employing LC-ESI-QTOF-MS/MS for profiling, a comprehensive list of polyphenols was curated. Additionally, various antioxidant assays-DPPH, FRAP, ABTS, RPA, FICA, and •OH-RSA-were performed to evaluate their antioxidant potential. A total of 61 polyphenols were identified, categorized into phenolic acid (19), flavonoids (33), and other phenolic substances (9). In the antioxidant assays, the SHP sample exhibited the highest •OH--RSA activity at 98.64 ± 1.45 mg AAE/g, while the FGL sample demonstrated prominent DPPH, FRAP, and ABTS activities with values of 32.47 ± 1.92 mg TE/g, 62.50 ± 3.70 mg TE/g, and 57.84 ± 1.22 mg AAE/g, respectively. Additionally, TPC and several antioxidant assays had a significant positive correlation, including DPPH, FRAP, and ABTS. The Australian-native passion fruits revealed distinct polyphenolic profiles and diverse antioxidant capacities, establishing a foundation for deeper health benefit analyses. This study accentuates the significance of understanding region-specific cultivars and their potential nutraceutical applications.
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Affiliation(s)
- Haoyao Liu
- School of Agriculture, Food and Ecosystem Sciences, Faculty of ScienceThe University of MelbourneParkvilleVictoriaAustralia
| | - Osman Tuncay Agar
- School of Agriculture, Food and Ecosystem Sciences, Faculty of ScienceThe University of MelbourneParkvilleVictoriaAustralia
- Department of Pharmacognosy, Faculty of PharmacySuleyman Demirel UniversityIspartaTurkey
| | - Ali Imran
- School of Agriculture, Food and Ecosystem Sciences, Faculty of ScienceThe University of MelbourneParkvilleVictoriaAustralia
- Department of Food Science, Faculty of Life ScienceGovernment College UniversityFaisalabadPakistan
| | - Colin J. Barrow
- Centre for Sustainable Bioproducts, School of Life and Environmental SciencesDeakin UniversityWaurn PondsVictoriaAustralia
| | - Frank R. Dunshea
- School of Agriculture, Food and Ecosystem Sciences, Faculty of ScienceThe University of MelbourneParkvilleVictoriaAustralia
- Faculty of Biological SciencesThe University of LeedsLeedsUK
| | - Hafiz A. R. Suleria
- School of Agriculture, Food and Ecosystem Sciences, Faculty of ScienceThe University of MelbourneParkvilleVictoriaAustralia
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Heffernan J, Garcia Gonzalez RA, Mahamkali V, McCubbin T, Daygon D, Liu L, Palfreyman R, Harris A, Koepke M, Valgepea K, Nielsen LK, Marcellin E. Adaptive laboratory evolution of Clostridium autoethanogenum to metabolize CO 2 and H 2 enhances growth rates in chemostat and unravels proteome and metabolome alterations. Microb Biotechnol 2024; 17:e14452. [PMID: 38568755 PMCID: PMC10990044 DOI: 10.1111/1751-7915.14452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Revised: 03/03/2024] [Accepted: 03/06/2024] [Indexed: 04/05/2024] Open
Abstract
Gas fermentation of CO2 and H2 is an attractive means to sustainably produce fuels and chemicals. Clostridium autoethanogenum is a model organism for industrial CO to ethanol and presents an opportunity for CO2-to-ethanol processes. As we have previously characterized its CO2/H2 chemostat growth, here we use adaptive laboratory evolution (ALE) with the aim of improving growth with CO2/H2. Seven ALE lineages were generated, all with improved specific growth rates. ALE conducted in the presence of 2% CO along with CO2/H2 generated Evolved lineage D, which showed the highest ethanol titres amongst all the ALE lineages during the fermentation of CO2/H2. Chemostat comparison against the parental strain shows no change in acetate or ethanol production, while Evolved D could achieve a higher maximum dilution rate. Multi-omics analyses at steady state revealed that Evolved D has widespread proteome and intracellular metabolome changes. However, the uptake and production rates and titres remain unaltered until investigating their maximum dilution rate. Yet, we provide numerous insights into CO2/H2 metabolism via these multi-omics data and link these results to mutations, suggesting novel targets for metabolic engineering in this bacterium.
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Affiliation(s)
- James Heffernan
- Australian Institute of Bioengineering and NanotechnologyThe University of QueenslandSt. LuciaQueenslandAustralia
- ARC Centre of Excellence in Synthetic BiologyThe University of QueenslandSt. LuciaQueenslandAustralia
| | - R. Axayactl Garcia Gonzalez
- Australian Institute of Bioengineering and NanotechnologyThe University of QueenslandSt. LuciaQueenslandAustralia
- ARC Centre of Excellence in Synthetic BiologyThe University of QueenslandSt. LuciaQueenslandAustralia
| | | | - Tim McCubbin
- Queensland Metabolomics and Proteomics Q‐MAPThe University of QueenslandSt. LuciaQueenslandAustralia
| | - Dara Daygon
- Queensland Metabolomics and Proteomics Q‐MAPThe University of QueenslandSt. LuciaQueenslandAustralia
| | - Lian Liu
- Queensland Metabolomics and Proteomics Q‐MAPThe University of QueenslandSt. LuciaQueenslandAustralia
| | - Robin Palfreyman
- Queensland Metabolomics and Proteomics Q‐MAPThe University of QueenslandSt. LuciaQueenslandAustralia
| | | | | | - Kaspar Valgepea
- ERA Chair in Gas Fermentation Technologies, Institute of TechnologyUniversity of TartuTartuEstonia
| | - Lars Keld Nielsen
- Australian Institute of Bioengineering and NanotechnologyThe University of QueenslandSt. LuciaQueenslandAustralia
- ARC Centre of Excellence in Synthetic BiologyThe University of QueenslandSt. LuciaQueenslandAustralia
- Queensland Metabolomics and Proteomics Q‐MAPThe University of QueenslandSt. LuciaQueenslandAustralia
- The Novo Nordisk Foundation Center for BiosustainabilityTechnical University of DenmarkKgs. LyngbyDenmark
| | - Esteban Marcellin
- Australian Institute of Bioengineering and NanotechnologyThe University of QueenslandSt. LuciaQueenslandAustralia
- ARC Centre of Excellence in Synthetic BiologyThe University of QueenslandSt. LuciaQueenslandAustralia
- Queensland Metabolomics and Proteomics Q‐MAPThe University of QueenslandSt. LuciaQueenslandAustralia
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Pavlova A, Schneller NM, Lintermans M, Beitzel M, Robledo‐Ruiz DA, Sunnucks P. Planning and implementing genetic rescue of an endangered freshwater fish population in a regulated river, where low flow reduces breeding opportunities and may trigger inbreeding depression. Evol Appl 2024; 17:e13679. [PMID: 38617824 PMCID: PMC11009430 DOI: 10.1111/eva.13679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 02/11/2024] [Accepted: 02/26/2024] [Indexed: 04/16/2024] Open
Abstract
Augmenting depleted genetic diversity can improve the fitness and evolutionary potential of wildlife populations, but developing effective management approaches requires genetically monitored test cases. One such case is the small, isolated and inbred Cotter River population of an endangered Australian freshwater fish, the Macquarie perch Macquaria australasica, which over 3 years (2017-2019) received 71 translocated migrants from a closely related, genetically more diverse population. We used genetic monitoring to test whether immigrants bred, interbred with local fish and augmented population genetic diversity. We also investigated whether levels of river flow affected recruitment, inbreeding depression and juvenile dispersal. Fish length was used to estimate the age, birth year cohort and growth of 524 individuals born between 2016 and 2020 under variable flow conditions. DArT genome-wide genotypes were used to assess individual ancestry, heterozygosity, short-term effective population size and identify parent-offspring and full-sibling families. Of 442 individuals born after translocations commenced, only two (0.45%) were of mixed ancestry; these were half-sibs with one translocated parent in common. Numbers of breeders and genetic diversity for five birth year cohorts of the Cotter River fish were low, especially in low-flow years. Additionally, individuals born in the year of lowest flow evidently suffered from inbreeding depression for juvenile growth. The year of highest flow was associated with the largest number of breeders, lowest inbreeding in the offspring and greatest juvenile dispersal distances. Genetic diversity decreased in the upstream direction, flagging restricted access of breeders to the most upstream breeding sites, exacerbated by low river flow. Our results suggest that the effectiveness of translocations could be increased by focussing on upstream sites and moving more individuals per year; using riverine sources should be considered. Our results indicate that river flow sufficient to facilitate fish movement through the system would increase the number of breeders, promote individuals' growth, reduce inbreeding depression and promote genetic rescue.
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Affiliation(s)
- Alexandra Pavlova
- School of Biological SciencesMonash UniversityMelbourneVictoriaAustralia
| | - Nadja M. Schneller
- School of Biological SciencesMonash UniversityMelbourneVictoriaAustralia
| | - Mark Lintermans
- Centre for Applied Water ScienceInstitute for Applied Ecology, University of CanberraCanberraAustralian Capital TerritoryAustralia
| | - Matt Beitzel
- Environment, Planning & Sustainable Development Directorate (ACT Government)CanberraAustralian Capital TerritoryAustralia
| | | | - Paul Sunnucks
- School of Biological SciencesMonash UniversityMelbourneVictoriaAustralia
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Ye X, Paul B, Mo J, Reynolds EC, Ghosal D, Veith PD. Ultrastructural and glycoproteomic characterization of Prevotella intermedia: Insights into O-glycosylation and outer membrane vesicles. Microbiologyopen 2024; 13:e1401. [PMID: 38409911 PMCID: PMC10897501 DOI: 10.1002/mbo3.1401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 02/08/2024] [Accepted: 02/16/2024] [Indexed: 02/28/2024] Open
Abstract
Prevotella intermedia, a Gram-negative bacterium from the Bacteroidota phylum, is associated with periodontitis. Other species within this phylum are known to possess the general O-glycosylation system. The O-glycoproteome has been characterized in several species, including Tannerella forsythia, Porphyromonas gingivalis, and Flavobacterium johnsoniae. In our study, we used electron cryotomography (cryoET) and glycoproteomics to reveal the ultrastructure of P. intermedia and characterize its O-glycoproteome. Our cryoET analysis unveiled the ultrastructural details of the cell envelope and outer membrane vesicles (OMVs) of P. intermedia. We observed an electron-dense surface layer surrounding both cells and OMVs. The OMVs were often large (>200 nm) and presented two types, with lumens being either electron-dense or translucent. LC-MS/MS analyses of P. intermedia fractions led to the identification of 1655 proteins, which included 62 predicted T9SS cargo proteins. Within the glycoproteome, we identified 443 unique O-glycosylation sites within 224 glycoproteins. Interestingly, the O-glycosylation motif exhibited a broader range than reported in other species, with O-glycosylation found at D(S/T)(A/I/L/M/T/V/S/C/G/F/N/E/Q/D/P). We identified a single O-glycan with a delta mass of 1531.48 Da. Its sequence was determined by MS2 and MS3 analyses using both collision-induced dissociation and high-energy collisional dissociation fragmentation modes. After partial deglycosylation with trifluoromethanesulfonic acid, the O-glycan sequence was confirmed to be dHex-dHex-HexNAc (HPO3 -C6 H12 O5 )-dHex-Hex-HexA-Hex(dHex). Bioinformatic analyses predicted the localization of O-glycoproteins, with 73 periplasmic proteins, 53 inner membrane proteins, 52 lipoproteins, 26 outer membrane proteins, and 14 proteins secreted by the T9SS.
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Affiliation(s)
- Xi Ye
- Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology InstituteThe University of MelbourneMelbourneVictoriaAustralia
- Oral Health Cooperative Research Centre, Melbourne Dental School, Bio21 InstituteThe University of MelbourneParkvilleVictoriaAustralia
| | - Bindusmita Paul
- Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology InstituteThe University of MelbourneMelbourneVictoriaAustralia
- Oral Health Cooperative Research Centre, Melbourne Dental School, Bio21 InstituteThe University of MelbourneParkvilleVictoriaAustralia
| | - Joyce Mo
- Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology InstituteThe University of MelbourneMelbourneVictoriaAustralia
- Oral Health Cooperative Research Centre, Melbourne Dental School, Bio21 InstituteThe University of MelbourneParkvilleVictoriaAustralia
| | - Eric C. Reynolds
- Oral Health Cooperative Research Centre, Melbourne Dental School, Bio21 InstituteThe University of MelbourneParkvilleVictoriaAustralia
| | - Debnath Ghosal
- Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology InstituteThe University of MelbourneMelbourneVictoriaAustralia
- ARC Centre for Cryo‐electron Microscopy of Membrane Proteins, Bio21 Molecular Science and Biotechnology InstituteUniversity of MelbourneParkvilleVictoriaAustralia
| | - Paul D. Veith
- Oral Health Cooperative Research Centre, Melbourne Dental School, Bio21 InstituteThe University of MelbourneParkvilleVictoriaAustralia
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Raven N, Klaassen M, Madsen T, Jones M, Hamilton DG, Ruiz-Aravena M, Thomas F, Hamede RK, Ujvari B. Complex associations between cancer progression and immune gene expression reveals early influence of transmissible cancer on Tasmanian devils. Front Immunol 2024; 15:1286352. [PMID: 38515744 PMCID: PMC10954821 DOI: 10.3389/fimmu.2024.1286352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Accepted: 01/29/2024] [Indexed: 03/23/2024] Open
Abstract
The world's largest extant carnivorous marsupial, the Tasmanian devil, is challenged by Devil Facial Tumor Disease (DFTD), a fatal, clonally transmitted cancer. In two decades, DFTD has spread across 95% of the species distributional range. A previous study has shown that factors such as season, geographic location, and infection with DFTD can impact the expression of immune genes in Tasmanian devils. To date, no study has investigated within-individual immune gene expression changes prior to and throughout the course of DFTD infection. To explore possible changes in immune response, we investigated four locations across Tasmania that differed in DFTD exposure history, ranging between 2 and >30 years. Our study demonstrated considerable complexity in the immune responses to DFTD. The same factors (sex, age, season, location and DFTD infection) affected immune gene expression both across and within devils, although seasonal and location specific variations were diminished in DFTD affected devils. We also found that expression of both adaptive and innate immune genes starts to alter early in DFTD infection and continues to change as DFTD progresses. A novel finding was that the lower expression of immune genes MHC-II, NKG2D and CD8 may predict susceptibility to earlier DFTD infection. A case study of a single devil with regressed tumor showed opposite/contrasting immune gene expression patterns compared to the general trends observed across devils with DFTD infection. Our study highlights the complexity of DFTD's interactions with the host immune system and the need for long-term studies to fully understand how DFTD alters the evolutionary trajectory of devil immunity.
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Affiliation(s)
- Nynke Raven
- Deakin University, School of Life and Environmental Sciences, Centre for Integrative Ecology, Geelong, VIC, Australia
| | - Marcel Klaassen
- Deakin University, School of Life and Environmental Sciences, Centre for Integrative Ecology, Geelong, VIC, Australia
| | - Thomas Madsen
- Deakin University, School of Life and Environmental Sciences, Centre for Integrative Ecology, Geelong, VIC, Australia
| | - Menna Jones
- School of Natural Sciences, University of Tasmania, Hobart, TAS, Australia
| | - David G. Hamilton
- School of Natural Sciences, University of Tasmania, Hobart, TAS, Australia
| | - Manuel Ruiz-Aravena
- Mississippi State University, Forest & Wildlife Research Center (FWRC)-Wildlife, Fisheries & Aquaculture, Starkville, MS, United States
| | - Frederic Thomas
- CREEC/CANECEV, CREES-MIVEGEC, Univ. Montpellier, CNRS, IRD, Montpellier, France
| | - Rodrigo K. Hamede
- School of Natural Sciences, University of Tasmania, Hobart, TAS, Australia
| | - Beata Ujvari
- Deakin University, School of Life and Environmental Sciences, Centre for Integrative Ecology, Geelong, VIC, Australia
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White TE. Deceptive pollinator lures benefit from physical and perceptual proximity to flowers. Ecol Evol 2024; 14:e11120. [PMID: 38450320 PMCID: PMC10917580 DOI: 10.1002/ece3.11120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2023] [Revised: 12/14/2023] [Accepted: 01/03/2024] [Indexed: 03/08/2024] Open
Abstract
Predators often use deception to exploit sensory and cognitive biases in prey. In pollinating insects, these include preferences for conspicuous colours associated with flowers, which predators such as orb-web spiders display as prey lures. Theory predicts that deceptive signal efficacy should covary with both their perceptual similarity and physical proximity to the resources-here, flowers-whose cues they are imitating. Here I used the colour-polymorphic jewelled spider Gasteracantha fornicata to test this prediction. I first examined spiders' capture success in the field, and found their visual resemblance and physical proximity to flowers interacted to mediate capture rates, with colour-similarity becoming increasingly important as the distance between spiders and flowers decreased. I then replicated this interaction experimentally. Spiders adjacent to colour-matched flowers enjoyed heightened capture success relative to those with nearby but colour-mismatched flowers. While spiders with flowers placed at a distance (irrespective of colour) recorded the fewest captures. These results support 'neighbourhood' effects in aggressive deception as receivers' vulnerability to exploitation is mediated by the local signalling community. More generally, they emphasise the importance of the broader information landscape in the ecology of communication, and suggest misinformation is most effective when physically and perceptually proximate to the truth.
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Affiliation(s)
- Thomas E. White
- School of Life and Environmental SciencesThe University of SydneySydneyNew South WalesAustralia
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Olah G, Waples RS, Stojanovic D. Influence of molecular marker type on estimating effective population size and other genetic parameters in a critically endangered parrot. Ecol Evol 2024; 14:e11102. [PMID: 38524913 PMCID: PMC10961163 DOI: 10.1002/ece3.11102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 02/15/2024] [Accepted: 02/20/2024] [Indexed: 03/26/2024] Open
Abstract
Genetics is a fast-moving field, and for conservation practitioners or ecologists, it can be bewildering. The choice of marker used in studies is fundamental; in the literature, preference has recently shifted from microsatellites to single nucleotide polymorphism (SNP) loci. Understanding how marker type affects estimates of population genetic parameters is important in the context of conservation, especially because the accuracy of estimates has a bearing on the actions taken to protect threatened species. We compare parameter estimates between seven microsatellites, 3761 SNP loci, and a random subset of 100 SNPs for the exact same 324 individual swift parrots, Lathamus discolor, and also use 457 additional samples from subsequent years to compare SNP estimates. Both marker types estimated a lower H O than H E. We show that microsatellites and SNPs mainly indicate a lack of spatial genetic structure, except when a priori collection locations were used on the SNP data in a discriminant analysis of principal components (DAPC). The 100-SNP subset gave comparable results to when the full dataset was used. Estimates of effective population size (N e) were comparable between markers when the same individuals were considered, but SNPs had narrower confidence intervals. This is reassuring because conservation assessments that rely on population genetic estimates based on a few microsatellites are unlikely to be nullified by the general shift toward SNPs in the literature. However, estimates between markers and datasets varied considerably when only adult samples were considered; hence, including samples of all age groups is recommended to be used when available. The estimated N e was higher for the full SNP dataset (2010-2019) than the smaller comparison data (2010-2015), which might be a better reflection of the species status. The lower precision of microsatellites may not necessarily be a barrier for most conservation applications; however, SNPs will improve confidence limits, which may be useful for practitioners.
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Affiliation(s)
- George Olah
- Fenner School of Environment and SocietyAustralian National UniversityCanberraAustralian Capital TerritoryAustralia
- King's Forensics, Department of Analytical, Environmental and Forensic Sciences, Faculty of Life Sciences and MedicineKing's College LondonLondonUK
| | - Robin S. Waples
- School of Aquatic and Fishery SciencesUniversity of WashingtonSeattleWashingtonUSA
| | - Dejan Stojanovic
- Fenner School of Environment and SocietyAustralian National UniversityCanberraAustralian Capital TerritoryAustralia
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Taylor GT, McQueen A, Eastwood JR, Dupoué A, Wong BBM, Verhulst S, Peters A. No effect of testosterone or sexual ornamentation on telomere dynamics: A case study and meta-analyses. Ecol Evol 2024; 14:e11088. [PMID: 38435019 PMCID: PMC10905238 DOI: 10.1002/ece3.11088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 02/11/2024] [Accepted: 02/16/2024] [Indexed: 03/05/2024] Open
Abstract
Life-history theory predicts that reproductive investments are traded-off against self-maintenance. Telomeres, the protective caps on the ends of chromosomes, offer a promising avenue for assessing life-history trade-offs, as they shorten in response to stressors and are predictive of the remaining lifespan. In males, testosterone frequently mediates life-history trade-offs, in part, through its effects on sexual ornamentation, which is an important aspect of reproductive investment. However, studies of within-individual associations between telomere dynamics and sexual ornamentation are limited in number and have produced mixed results. Furthermore, most such studies have been observational, making it difficult to discern the nature of any causal relationship. To address this, we used short-acting testosterone implants in free-living male superb fairy-wrens (Malurus cyaneus) to stimulate the production of a sexual ornament: early moult into a costly blue breeding plumage. We found no evidence that elevated testosterone, and the consequent earlier moult into breeding plumage, accelerated telomere shortening. We therefore followed up with a systematic review and two meta-analyses (28 studies, 54 effect sizes) exploring the associations between telomeres and (1) testosterone and (2) sexual ornamentation. In line with our experimental findings, neither meta-analysis showed an overall correlation of testosterone or sexual ornamentation with telomere length or telomere dynamics. However, meta-regression showed that experimental, compared to observational, studies reported greater evidence of trade-offs. Our meta-analyses highlight the need for further experimental studies to better understand potential responses of telomere length or telomere dynamics to testosterone or sexual ornamentation.
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Affiliation(s)
- Gregory T. Taylor
- School of Biological SciencesMonash UniversityClaytonVictoriaAustralia
| | - Alexandra McQueen
- School of Biological SciencesMonash UniversityClaytonVictoriaAustralia
- Present address:
Centre for Integrative EcologyDeakin UniversityBurwoodVictoriaAustralia
| | | | - Andréaz Dupoué
- School of Biological SciencesMonash UniversityClaytonVictoriaAustralia
- Present address:
CNRS Sorbonne Université, UMR 7618, iEES ParisUniversité Pierre et Marie CurieParisFrance
| | - Bob B. M. Wong
- School of Biological SciencesMonash UniversityClaytonVictoriaAustralia
| | - Simon Verhulst
- Groningen Institute for Evolutionary Life SciencesUniversity of GroningenGroningenThe Netherlands
| | - Anne Peters
- School of Biological SciencesMonash UniversityClaytonVictoriaAustralia
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Everingham SE, Offord CA, Sabot MEB, Moles AT. Leaf morphological traits show greater responses to changes in climate than leaf physiological traits and gas exchange variables. Ecol Evol 2024; 14:e10941. [PMID: 38510539 PMCID: PMC10951557 DOI: 10.1002/ece3.10941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 12/04/2023] [Accepted: 12/08/2023] [Indexed: 03/22/2024] Open
Abstract
Adaptation to changing conditions is one of the strategies plants may use to survive in the face of climate change. We aimed to determine whether plants' leaf morphological and physiological traits/gas exchange variables have changed in response to recent, anthropogenic climate change. We grew seedlings from resurrected historic seeds from ex-situ seed banks and paired modern seeds in a common-garden experiment. Species pairs were collected from regions that had undergone differing levels of climate change using an emerging framework-Climate Contrast Resurrection Ecology, allowing us to hypothesise that regions with greater changes in climate (including temperature, precipitation, climate variability and climatic extremes) would be greater trait responses in leaf morphology and physiology over time. Our study found that in regions where there were greater changes in climate, there were greater changes in average leaf area, leaf margin complexity, leaf thickness and leaf intrinsic water use efficiency. Changes in leaf roundness, photosynthetic rate, stomatal density and the leaf economic strategy of our species were not correlated with changes in climate. Our results show that leaves do have the ability to respond to changes in climate, however, there are greater inherited responses in morphological leaf traits than in physiological traits/variables and greater responses to extreme measures of climate than gradual changes in climatic means. It is vital for accurate predictions of species' responses to impending climate change to ensure that future climate change ecology studies utilise knowledge about the difference in both leaf trait and gas exchange responses and the climate variables that they respond to.
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Affiliation(s)
- Susan E. Everingham
- Evolution and Ecology Research Centre, School of Biological, Earth and Environmental SciencesUNSWSydneyNew South WalesAustralia
- The Australian Institute of Botanical Science, The Australian PlantBank, Royal Botanic Gardens and Domain Trust, Australian Botanic Garden Mount AnnanMount AnnanNew South WalesAustralia
- Institute of Plant SciencesUniversity of BernBernSwitzerland
- Oeschger Centre for Climate Change ResearchUniversity of BernBernSwitzerland
| | - Catherine A. Offord
- The Australian Institute of Botanical Science, The Australian PlantBank, Royal Botanic Gardens and Domain Trust, Australian Botanic Garden Mount AnnanMount AnnanNew South WalesAustralia
| | - Manon E. B. Sabot
- Climate Change Research CentreUNSWSydneyNew South WalesAustralia
- Australian Research Council Centre of Excellence for Climate ExtremesUNSWSydneyNew South WalesAustralia
| | - Angela T. Moles
- Evolution and Ecology Research Centre, School of Biological, Earth and Environmental SciencesUNSWSydneyNew South WalesAustralia
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Gérard A, Owen RS, Dujon AM, Roche B, Hamede R, Thomas F, Ujvari B, Siddle HV. In vitro competition between two transmissible cancers and potential implications for their host, the Tasmanian devil. Evol Appl 2024; 17:e13670. [PMID: 38468711 PMCID: PMC10925828 DOI: 10.1111/eva.13670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 02/02/2024] [Accepted: 02/09/2024] [Indexed: 03/13/2024] Open
Abstract
Since the emergence of a transmissible cancer, devil facial tumour disease (DFT1), in the 1980s, wild Tasmanian devil populations have been in decline. In 2016, a second, independently evolved transmissible cancer (DFT2) was discovered raising concerns for survival of the host species. Here, we applied experimental and modelling frameworks to examine competition dynamics between the two transmissible cancers in vitro. Using representative cell lines for DFT1 and DFT2, we have found that in monoculture, DFT2 grows twice as fast as DFT1 but reaches lower maximum cell densities. Using co-cultures, we demonstrate that DFT2 outcompetes DFT1: the number of DFT1 cells decreasing over time, never reaching exponential growth. This phenomenon could not be replicated when cells were grown separated by a semi-permeable membrane, consistent with exertion of mechanical stress on DFT1 cells by DFT2. A logistic model and a Lotka-Volterra competition model were used to interrogate monoculture and co-culture growth curves, respectively, suggesting DFT2 is a better competitor than DFT1, but also showing that competition outcomes might depend on the initial number of cells, at least in the laboratory. We provide theories how the in vitro results could be translated to observations in the wild and propose that these results may indicate that although DFT2 is currently in a smaller geographic area than DFT1, it could have the potential to outcompete DFT1. Furthermore, we provide a framework for improving the parameterization of epidemiological models applied to these cancer lineages, which will inform future disease management.
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Affiliation(s)
- Anne‐Lise Gérard
- School of Life and Environmental SciencesDeakin UniversityWaurn PondsVictoriaAustralia
- CREEC/MIVEGEC, CNRS, IRDUniversité de MontpellierMontpellierFrance
| | - Rachel S. Owen
- School of Biological SciencesUniversity of SouthamptonSouthamptonUK
- Institute for Life SciencesUniversity of SouthamptonSouthamptonUK
- The Roslin InstituteThe University of EdinburghEdinburghUK
| | - Antoine M. Dujon
- School of Life and Environmental SciencesDeakin UniversityWaurn PondsVictoriaAustralia
| | - Benjamin Roche
- CREEC/MIVEGEC, CNRS, IRDUniversité de MontpellierMontpellierFrance
| | - Rodrigo Hamede
- School of Natural SciencesUniversity of TasmaniaHobartTasmaniaAustralia
| | - Frédéric Thomas
- CREEC/MIVEGEC, CNRS, IRDUniversité de MontpellierMontpellierFrance
| | - Beata Ujvari
- School of Life and Environmental SciencesDeakin UniversityWaurn PondsVictoriaAustralia
| | - Hannah V. Siddle
- School of Biological SciencesUniversity of SouthamptonSouthamptonUK
- Institute for Life SciencesUniversity of SouthamptonSouthamptonUK
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11
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Cao T, Pang JC, Segal A, Chen Y, Aquino KM, Breakspear M, Fornito A. Mode-based morphometry: A multiscale approach to mapping human neuroanatomy. Hum Brain Mapp 2024; 45:e26640. [PMID: 38445545 PMCID: PMC10915742 DOI: 10.1002/hbm.26640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 02/06/2024] [Accepted: 02/18/2024] [Indexed: 03/07/2024] Open
Abstract
Voxel-based morphometry (VBM) and surface-based morphometry (SBM) are two widely used neuroimaging techniques for investigating brain anatomy. These techniques rely on statistical inferences at individual points (voxels or vertices), clusters of points, or a priori regions-of-interest. They are powerful tools for describing brain anatomy, but offer little insights into the generative processes that shape a particular set of findings. Moreover, they are restricted to a single spatial resolution scale, precluding the opportunity to distinguish anatomical variations that are expressed across multiple scales. Drawing on concepts from classical physics, here we develop an approach, called mode-based morphometry (MBM), that can describe any empirical map of anatomical variations in terms of the fundamental, resonant modes-eigenmodes-of brain anatomy, each tied to a specific spatial scale. Hence, MBM naturally yields a multiscale characterization of the empirical map, affording new opportunities for investigating the spatial frequency content of neuroanatomical variability. Using simulated and empirical data, we show that the validity and reliability of MBM are either comparable or superior to classical vertex-based SBM for capturing differences in cortical thickness maps between two experimental groups. Our approach thus offers a robust, accurate, and informative method for characterizing empirical maps of neuroanatomical variability that can be directly linked to a generative physical process.
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Affiliation(s)
- Trang Cao
- The Turner Institute for Brain and Mental HealthSchool of Psychological Sciences, and Monash Biomedical Imaging, Monash UniversityClaytonVictoriaAustralia
| | - James C. Pang
- The Turner Institute for Brain and Mental HealthSchool of Psychological Sciences, and Monash Biomedical Imaging, Monash UniversityClaytonVictoriaAustralia
| | - Ashlea Segal
- The Turner Institute for Brain and Mental HealthSchool of Psychological Sciences, and Monash Biomedical Imaging, Monash UniversityClaytonVictoriaAustralia
| | - Yu‐Chi Chen
- The Turner Institute for Brain and Mental HealthSchool of Psychological Sciences, and Monash Biomedical Imaging, Monash UniversityClaytonVictoriaAustralia
| | - Kevin M. Aquino
- School of PhysicsUniversity of SydneyCamperdownNew South WalesAustralia
| | - Michael Breakspear
- School of Psychological SciencesUniversity of NewcastleCallaghanNew South WalesAustralia
| | - Alex Fornito
- The Turner Institute for Brain and Mental HealthSchool of Psychological Sciences, and Monash Biomedical Imaging, Monash UniversityClaytonVictoriaAustralia
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12
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Hemingson CR, Cowman PF, Bellwood DR. Analysing biological colour patterns from digital images: An introduction to the current toolbox. Ecol Evol 2024; 14:e11045. [PMID: 38500859 PMCID: PMC10945235 DOI: 10.1002/ece3.11045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 02/02/2024] [Accepted: 02/03/2024] [Indexed: 03/20/2024] Open
Abstract
Understanding the numerous roles that colouration serves in the natural world has remained a central focus in many evolutionary and ecological studies. However, to accurately characterise and then compare colours or patterns among individuals or species has been historically challenging. In recent years, there have been a myriad of new resources developed that allow researchers to characterise biological colours and patterns, specifically from digital imagery. However, each resource has its own strengths and weaknesses, answers a specific question and requires a detailed understanding of how it functions to be used properly. These nuances can make navigating this emerging field rather difficult. Herein, we evaluate several new techniques for analysing biological colouration, with a specific focus on digital images. First, we introduce fundamental background knowledge about light and perception to be considered when designing and implementing a study of colouration. We then show how numerous modifications can be made to images to ensure consistent formatting prior to analysis. After, we describe many of the new image analysis approaches and their respective functions, highlighting the type of research questions that they can address. We demonstrate how these various techniques can be brought together to examine novel research questions and test specific hypotheses. Finally, we outline potential future directions in colour pattern studies. Our goal is to provide a starting point and pathway for researchers wanting to study biological colour patterns from digital imagery.
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Affiliation(s)
- Christopher R. Hemingson
- The Research Hub for Coral Reef Ecosystem FunctionsJames Cook UniversityTownsvilleQueenslandAustralia
- College of Science and EngineeringJames Cook UniversityTownsvilleQueenslandAustralia
| | - Peter F. Cowman
- Biodiversity and Geosciences Program, Queensland Museum TropicsTownsvilleQueenslandAustralia
| | - David R. Bellwood
- The Research Hub for Coral Reef Ecosystem FunctionsJames Cook UniversityTownsvilleQueenslandAustralia
- College of Science and EngineeringJames Cook UniversityTownsvilleQueenslandAustralia
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13
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Cheung K, Amos TG, Shine R, DeVore JL, Ducatez S, Edwards RJ, Rollins LA. Whole-mitogenome analysis unveils previously undescribed genetic diversity in cane toads across their invasion trajectory. Ecol Evol 2024; 14:e11115. [PMID: 38435005 PMCID: PMC10909579 DOI: 10.1002/ece3.11115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 02/16/2024] [Accepted: 02/22/2024] [Indexed: 03/05/2024] Open
Abstract
Invasive species offer insights into rapid adaptation to novel environments. The iconic cane toad (Rhinella marina) is an excellent model for studying rapid adaptation during invasion. Previous research using the mitochondrial NADH dehydrogenase 3 (ND3) gene in Hawai'ian and Australian invasive populations found a single haplotype, indicating an extreme genetic bottleneck following introduction. Nuclear genetic diversity also exhibited reductions across the genome in these two populations. Here, we investigated the mitochondrial genomics of cane toads across this invasion trajectory. We created the first reference mitochondrial genome for this species using long-read sequence data. We combined whole-genome resequencing data of 15 toads with published transcriptomic data of 125 individuals to construct nearly complete mitochondrial genomes from the native (French Guiana) and introduced (Hawai'i and Australia) ranges for population genomic analyses. In agreement with previous investigations of these populations, we identified genetic bottlenecks in both Hawai'ian and Australian introduced populations, alongside evidence of population expansion in the invasive ranges. Although mitochondrial genetic diversity in introduced populations was reduced, our results revealed that it had been underestimated: we identified 45 mitochondrial haplotypes in Hawai'ian and Australian samples, none of which were found in the native range. Additionally, we identified two distinct groups of haplotypes from the native range, separated by a minimum of 110 base pairs (0.6%). These findings enhance our understanding of how invasion has shaped the genetic landscape of this species.
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Affiliation(s)
- Kelton Cheung
- Evolution & Ecology Research Centre, School of Biological, Earth & Environmental SciencesUniversity of New South WalesSydneyNew South WalesAustralia
- School of Biotechnology & Biomolecular SciencesUniversity of New South WalesSydneyNew South WalesAustralia
| | - Timothy G. Amos
- School of Biotechnology & Biomolecular SciencesUniversity of New South WalesSydneyNew South WalesAustralia
- Garvan Institute of Medical ResearchSydneyNew South WalesAustralia
| | - Rick Shine
- Department of Biological SciencesMacquarie UniversitySydneyNew South WalesAustralia
| | - Jayna L. DeVore
- Univ. Polynésie FrancaiseUMR 241 EIO (UPF, IRD, IFREMER, ILM) BP 6570 Faa'aTahitiFrench Polynesia
| | - Simon Ducatez
- Institut de Recherche pour le Développement (IRD)UMR 241 EIO (UPF, IRD, IFREMER, ILM) BP 6570 Faa'aTahitiFrench Polynesia
| | - Richard J. Edwards
- School of Biotechnology & Biomolecular SciencesUniversity of New South WalesSydneyNew South WalesAustralia
- Minderoo OceanOmics Centre at UWA, Oceans InstituteThe University of Western AustraliaPerthWestern AustraliaAustralia
| | - Lee Ann Rollins
- Evolution & Ecology Research Centre, School of Biological, Earth & Environmental SciencesUniversity of New South WalesSydneyNew South WalesAustralia
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14
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Williams OR, Vander Schoor JK, Butler JB, Hecht VFG, Weller JL. Physical seed dormancy in pea is genetically separable from seed coat thickness and roughness. Front Plant Sci 2024; 15:1359226. [PMID: 38476691 PMCID: PMC10927720 DOI: 10.3389/fpls.2024.1359226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Accepted: 02/09/2024] [Indexed: 03/14/2024]
Abstract
Introduction The seeds of wild pea (Pisum) exhibit marked physical dormancy due to impermeability of the seed coat to water, and the loss of this dormancy is thought to have been critical for domestication. Wild pea seed coats are also notably thick and rough, traits that have also reduced during domestication and are anecdotally linked to increased permeability. However, how these traits specifically interact with permeability is unclear. Methods To investigate this, we examined the genetic control of differences in seed coat characteristics between wild P. sativum ssp. humile and a non-dormant domesticated P. s. sativum accession in a recombinant inbred population. QTL effects were confirmed and their locations refined in segregating F4/5 populations. Results In this population we found a moderate correlation between testa thickness and permeability, and identified loci that affect them independently, suggesting no close functional association. However, the major loci affecting both testa thickness and permeability collocated closely with Mendel's pigmentation locus A, suggesting flavonoid compounds under its control might contribute significantly to both traits. We also show that seed coat roughness is oligogenic in this population, with the major locus independent of both testa thickness and permeability, suggesting selection for smooth seed was unlikely to be due to effects on either of these traits. Discussion Results indicate loss of seed coat dormancy during domestication was not primarily driven by reduced testa thickness or smooth seededness. The close association between major permeability and thickness QTL and Mendel's 'A' warrant further study, particularly regarding the role of flavonoids.
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Affiliation(s)
- Owen R. Williams
- School of Natural Sciences, University of Tasmania, Hobart, TAS, Australia
| | - Jacqueline K. Vander Schoor
- School of Natural Sciences, University of Tasmania, Hobart, TAS, Australia
- ARC Centre of Excellence for Plant Success in Nature and Agriculture, University of Tasmania, Hobart, TAS, Australia
| | - Jakob B. Butler
- School of Natural Sciences, University of Tasmania, Hobart, TAS, Australia
- ARC Centre of Excellence for Plant Success in Nature and Agriculture, University of Tasmania, Hobart, TAS, Australia
| | | | - James L. Weller
- School of Natural Sciences, University of Tasmania, Hobart, TAS, Australia
- ARC Centre of Excellence for Plant Success in Nature and Agriculture, University of Tasmania, Hobart, TAS, Australia
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15
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Lu L, Kong WY, Zhang J, Firdaus F, Wells JW, Stephenson RJ, Toth I, Skwarczynski M, Cruz JLG. Utilizing murine dendritic cell line DC2.4 to evaluate the immunogenicity of subunit vaccines in vitro. Front Immunol 2024; 15:1298721. [PMID: 38469294 PMCID: PMC10925716 DOI: 10.3389/fimmu.2024.1298721] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Accepted: 02/07/2024] [Indexed: 03/13/2024] Open
Abstract
Subunit vaccines hold substantial promise in controlling infectious diseases, due to their superior safety profile, specific immunogenicity, simplified manufacturing processes, and well-defined chemical compositions. One of the most important end-targets of vaccines is a subset of lymphocytes originating from the thymus, known as T cells, which possess the ability to mount an antigen-specific immune response. Furthermore, vaccines confer long-term immunity through the generation of memory T cell pools. Dendritic cells are essential for the activation of T cells and the induction of adaptive immunity, making them key for the in vitro evaluation of vaccine efficacy. Upon internalization by dendritic cells, vaccine-bearing antigens are processed, and suitable fragments are presented to T cells by major histocompatibility complex (MHC) molecules. In addition, DCs can secrete various cytokines to crosstalk with T cells to coordinate subsequent immune responses. Here, we generated an in vitro model using the immortalized murine dendritic cell line, DC2.4, to recapitulate the process of antigen uptake and DC maturation, measured as the elevation of CD40, MHC-II, CD80 and CD86 on the cell surface. The levels of key DC cytokines, tumor necrosis alpha (TNF-α) and interleukin-10 (IL-10) were measured to better define DC activation. This information served as a cost-effective and rapid proxy for assessing the antigen presentation efficacy of various vaccine formulations, demonstrating a strong correlation with previously published in vivo study outcomes. Hence, our assay enables the selection of the lead vaccine candidates based on DC activation capacity prior to in vivo animal studies.
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Affiliation(s)
- Lantian Lu
- School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia
- Faculty of Medicine, Frazer Institute, The University of Queensland, Woolloongabba, QLD, Australia
| | - Wei Yang Kong
- Faculty of Medicine, Frazer Institute, The University of Queensland, Woolloongabba, QLD, Australia
| | - Jiahui Zhang
- School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia
- Faculty of Medicine, Frazer Institute, The University of Queensland, Woolloongabba, QLD, Australia
| | - Farrhana Firdaus
- School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia
| | - James W. Wells
- Faculty of Medicine, Frazer Institute, The University of Queensland, Woolloongabba, QLD, Australia
| | - Rachel J. Stephenson
- School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia
| | - Istvan Toth
- School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia
- Institute of Molecular Bioscience, The University of Queensland, St. Lucia, QLD, Australia
- School of Pharmacy, The University of Queensland, Woolloongabba, QLD, Australia
| | - Mariusz Skwarczynski
- School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia
| | - Jazmina L. Gonzalez Cruz
- Faculty of Medicine, Frazer Institute, The University of Queensland, Woolloongabba, QLD, Australia
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16
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Buckley SJ, Nguyen TV, Cummins SF, Elizur A, Fitzgibbon QP, Smith GS, Mykles DL, Ventura T. Evaluating conserved domains and motifs of decapod gonadotropin-releasing hormone G protein-coupled receptor superfamily. Front Endocrinol (Lausanne) 2024; 15:1348465. [PMID: 38444586 PMCID: PMC10912298 DOI: 10.3389/fendo.2024.1348465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/02/2023] [Accepted: 01/18/2024] [Indexed: 03/07/2024] Open
Abstract
G protein-coupled receptors (GPCRs) are an ancient family of signal transducers that are both abundant and consequential in metazoan endocrinology. The evolutionary history and function of the GPCRs of the decapod superfamilies of gonadotropin-releasing hormone (GnRH) are yet to be fully elucidated. As part of which, the use of traditional phylogenetics and the recycling of a diminutive set of mis-annotated databases has proven insufficient. To address this, we have collated and revised eight existing and three novel GPCR repertoires for GnRH of decapod species. We developed a novel bioinformatic workflow that included clustering analysis to capture likely GnRH receptor-like proteins, followed by phylogenetic analysis of the seven transmembrane-spanning domains. A high degree of conservation of the sequences and topology of the domains and motifs allowed the identification of species-specific variation (up to ~70%, especially in the extracellular loops) that is thought to be influential to ligand-binding and function. Given the key functional role of the DRY motif across GPCRs, the classification of receptors based on the variation of this motif can be universally applied to resolve cryptic GPCR families, as was achieved in this work. Our results contribute to the resolution of the evolutionary history of invertebrate GnRH receptors and inform the design of bioassays in their deorphanization and functional annotation.
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Affiliation(s)
- Sean J. Buckley
- Centre for Bioinnovation, University of the Sunshine Coast, Maroochydore, QLD, Australia
- School of Science, Technology and Engineering, University of the Sunshine Coast, Maroochydore, QLD, Australia
| | - Tuan Viet Nguyen
- Centre for AgriBioscience, Agriculture Victoria, Bundoora, VIC, Australia
| | - Scott F. Cummins
- Centre for Bioinnovation, University of the Sunshine Coast, Maroochydore, QLD, Australia
- School of Science, Technology and Engineering, University of the Sunshine Coast, Maroochydore, QLD, Australia
| | - Abigail Elizur
- Centre for Bioinnovation, University of the Sunshine Coast, Maroochydore, QLD, Australia
| | - Quinn P. Fitzgibbon
- Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, Hobart, TAS, Australia
| | - Gregory S. Smith
- Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, Hobart, TAS, Australia
| | - Donald L. Mykles
- Department of Biology, Colorado State University, Fort Collins, CO, United States
- University of California-Davis Bodega Marine Laboratory, Bodega Bay, CA, United States
| | - Tomer Ventura
- Centre for Bioinnovation, University of the Sunshine Coast, Maroochydore, QLD, Australia
- School of Science, Technology and Engineering, University of the Sunshine Coast, Maroochydore, QLD, Australia
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17
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Leong SL, Gras S, Grant EJ. Fighting flu: novel CD8 + T-cell targets are required for future influenza vaccines. Clin Transl Immunology 2024; 13:e1491. [PMID: 38362528 PMCID: PMC10867544 DOI: 10.1002/cti2.1491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 01/29/2024] [Accepted: 01/30/2024] [Indexed: 02/17/2024] Open
Abstract
Seasonal influenza viruses continue to cause severe medical and financial complications annually. Although there are many licenced influenza vaccines, there are billions of cases of influenza infection every year, resulting in the death of over half a million individuals. Furthermore, these figures can rise in the event of a pandemic, as seen throughout history, like the 1918 Spanish influenza pandemic (50 million deaths) and the 1968 Hong Kong influenza pandemic (~4 million deaths). In this review, we have summarised many of the currently licenced influenza vaccines available across the world and current vaccines in clinical trials. We then briefly discuss the important role of CD8+ T cells during influenza infection and why future influenza vaccines should consider targeting CD8+ T cells. Finally, we assess the current landscape of known immunogenic CD8+ T-cell epitopes and highlight the knowledge gaps required to be filled for the design of rational future influenza vaccines that incorporate CD8+ T cells.
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Affiliation(s)
- Samuel Liwei Leong
- Department of Biochemistry and Chemistry, La Trobe Institute for Molecular ScienceLa Trobe UniversityBundooraVICAustralia
| | - Stephanie Gras
- Department of Biochemistry and Chemistry, La Trobe Institute for Molecular ScienceLa Trobe UniversityBundooraVICAustralia
- Department of Biochemistry and Molecular Biology, Biomedicine Discovery InstituteMonash UniversityClaytonVICAustralia
| | - Emma J Grant
- Department of Biochemistry and Chemistry, La Trobe Institute for Molecular ScienceLa Trobe UniversityBundooraVICAustralia
- Department of Biochemistry and Molecular Biology, Biomedicine Discovery InstituteMonash UniversityClaytonVICAustralia
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18
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Margetts BM, Stuart‐Fox D, Franklin AM. Red vision in animals is broadly associated with lighting environment but not types of visual task. Ecol Evol 2024; 14:e10899. [PMID: 38304263 PMCID: PMC10828735 DOI: 10.1002/ece3.10899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 12/19/2023] [Accepted: 01/03/2024] [Indexed: 02/03/2024] Open
Abstract
Red sensitivity is the exception rather than the norm in most animal groups. Among species with red sensitivity, there is substantial variation in the peak wavelength sensitivity (λmax) of the long wavelength sensitive (LWS) photoreceptor. It is unclear whether this variation can be explained by visual tuning to the light environment or to visual tasks such as signalling or foraging. Here, we examine long wavelength sensitivity across a broad range of taxa showing diversity in LWS photoreceptor λmax: insects, crustaceans, arachnids, amphibians, reptiles, fish, sharks and rays. We collated a list of 161 species with physiological evidence for a photoreceptor sensitive to red wavelengths (i.e. λmax ≥ 550 nm) and for each species documented abiotic and biotic factors that may be associated with peak sensitivity of the LWS photoreceptor. We found evidence supporting visual tuning to the light environment: terrestrial species had longer λmax than aquatic species, and of these, species from turbid shallow waters had longer λmax than those from clear or deep waters. Of the terrestrial species, diurnal species had longer λmax than nocturnal species, but we did not detect any differences across terrestrial habitats (closed, intermediate or open). We found no association with proxies for visual tasks such as having red morphological features or utilising flowers or coral reefs. These results support the emerging consensus that, in general, visual systems are broadly adapted to the lighting environment and diverse visual tasks. Links between visual systems and specific visual tasks are commonly reported, but these likely vary among species and do not lead to general patterns across species.
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Affiliation(s)
- Bryony M. Margetts
- School of BioSciencesThe University of MelbourneParkvilleVictoriaAustralia
| | - Devi Stuart‐Fox
- School of BioSciencesThe University of MelbourneParkvilleVictoriaAustralia
| | - Amanda M. Franklin
- School of BioSciencesThe University of MelbourneParkvilleVictoriaAustralia
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19
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Xu R, Jap E, Gubbins B, Hagemeyer CE, Karas JA. Semisynthesis of A6-A11 lactam insulin. J Pept Sci 2024; 30:e3542. [PMID: 37697741 PMCID: PMC10909544 DOI: 10.1002/psc.3542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 08/22/2023] [Accepted: 08/23/2023] [Indexed: 09/13/2023]
Abstract
Insulin replacement therapy is essential for the management of diabetes. However, despite the relative success of this therapeutic strategy, there is still a need to improve glycaemic control and the overall quality of life of patients. This need has driven research into orally available, glucose-responsive and rapid-acting insulins. A key consideration during analogue development is formulation stability, which can be improved via the replacement of insulin's A6-A11 disulfide bond with stable mimetics. Unfortunately, analogues such as these require extensive chemical synthesis to incorporate the nonnative cross-links, which is not a scalable synthetic approach. To address this issue, we demonstrate proof of principle for the semisynthesis of insulin analogues bearing nonnative A6-A11 cystine isosteres. The key feature of our synthetic strategy involves the use of several biosynthetically derived peptide precursors which can be produced at scale cost-effectively and a small, chemically synthesised A6-A11 macrocyclic lactam fragment. Although the assembled A6-A11 lactam insulin possesses poor biological activity in vitro, our synthetic strategy can be applied to other disulfide mimetics that have been shown to improve thermal stability without significantly affecting activity and structure. Moreover, we envisage that this new semisynthetic approach will underpin a new generation of hyperstable proteomimetics.
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Affiliation(s)
- Rong Xu
- Australian Centre for Blood DiseasesMonash UniversityMelbourneVictoria3004Australia
| | - Edwina Jap
- Australian Centre for Blood DiseasesMonash UniversityMelbourneVictoria3004Australia
| | - Ben Gubbins
- School of ChemistryThe University of MelbourneMelbourneVictoria3010Australia
| | | | - John A. Karas
- School of ChemistryThe University of MelbourneMelbourneVictoria3010Australia
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20
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Rasool AE, Furlong T, Prasad AA. Microglia activity in the human basal ganglia is altered in alcohol use disorder and reversed with remission from alcohol. Addict Biol 2024; 29:e13374. [PMID: 38380734 PMCID: PMC10898843 DOI: 10.1111/adb.13374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2023] [Revised: 11/10/2023] [Accepted: 01/15/2024] [Indexed: 02/22/2024]
Abstract
Alcohol use disorder (AUD) is characterized by cycles of abuse, withdrawal, and relapse. Neuroadaptations in the basal ganglia are observed in AUD; specifically in the putamen, globus pallidus (GP), and ventral pallidum (VP). These regions are associated with habit formation, drug-seeking behaviors, and reward processing. While previous studies have shown the crucial role of glial cells in drug seeking, it remains unknown whether glial cells in the basal ganglia are altered in AUD. Glial cells in the putamen, GP, and VP were examined in human post-mortem tissue of AUD and alcohol remission cases. Immunohistochemistry was performed to analyze cell count, staining intensity, and morphology of microglia and astrocytes, using markers Iba-1 and GFAP. Morphological analysis revealed a significant decrease in microglia cell size and process retraction, indicating activation or a dystrophic microglia phenotype in individuals with AUD compared to controls. Microglia staining intensity was also higher in the GP and VP in AUD cases, whereas microglia staining intensity and cell size in remission cases were not different to control cases. In contrast, no astrocyte changes were observed in examined brain regions for both AUD and remission cases compared to controls. These results suggest alcohol exposure alters microglia, potentially contributing to dysfunctions in the basal ganglia that maintain addiction, and abstinence from alcohol may reverse microglia changes and associated dysfunctions. Overall, this study further characterizes AUD neuropathology and implicates microglia in the putamen, GP, and VP as a potential target for therapy.
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Affiliation(s)
- Ameer Elena Rasool
- School of Medical Sciences, Faculty of Medicine and HealthUniversity of SydneySydneyNew South WalesAustralia
| | - Teri Furlong
- School of MedicineUniversity of New SouthSydneyNew South WalesAustralia
| | - Asheeta A. Prasad
- School of Medical Sciences, Faculty of Medicine and HealthUniversity of SydneySydneyNew South WalesAustralia
- School of PsychologyUniversity of New SouthSydneyNew South WalesAustralia
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21
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Dewenter BS, Shah AA, Hughes J, Poff NL, Thompson R, Kefford BJ. The thermal breadth of temperate and tropical freshwater insects supports the climate variability hypothesis. Ecol Evol 2024; 14:e10937. [PMID: 38405410 PMCID: PMC10891360 DOI: 10.1002/ece3.10937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2023] [Revised: 12/13/2023] [Accepted: 01/04/2024] [Indexed: 02/27/2024] Open
Abstract
Climate change involves increases in mean temperature and changes in temperature variability at multiple temporal scales but research rarely considers these temporal scales. The climate variability hypothesis (CVH) provides a conceptual framework for exploring the potential effects of annual scale thermal variability across climatic zones. The CVH predicts ectotherms in temperate regions tolerate a wider range of temperatures than those in tropical regions in response to greater annual variability in temperate regions. However, various other aspects of thermal regimes (e.g. diel variability), organisms' size and taxonomic identity are also hypothesised to influence thermal tolerance. Indeed, high temperatures in the tropics have been proposed as constraining organisms' ability to tolerate a wide range of temperatures, implying that high annual maximum temperatures would be associated with tolerating a narrow range of temperatures. We measured thermal regimes and critical thermal limits (CTmax and CTmin) of freshwater insects in the orders Ephemeroptera (mayflies), Plecoptera (stoneflies) and Trichoptera (caddisflies) along elevation gradients in streams in temperate and tropical regions of eastern Australia and tested the CVH by determining which variables were most correlated with thermal breadth (T br = CTmax - CTmin). Consistent with the CVH, T br tended to increase with increasing annual temperature range. T br also increased with body size and T br was generally wider in Plecoptera than in Ephemeroptera or Trichoptera. We also find some support for a related hypothesis, the climate extreme hypothesis (CEH), particularly for predicting upper thermal limits. We found no evidence that higher annual maximum temperature constrained individuals' abilities to tolerate a wide range of temperatures. The support for the CVH we document suggests that temperate organisms may be able to tolerate wider ranges of temperatures than tropical organisms. There is an urgent need to investigate other aspects of thermal regimes, such as diel temperature cycling and minimum temperature.
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Affiliation(s)
- Beatrice S. Dewenter
- Centre for Applied Water Science, Institute for Applied EcologyUniversity of CanberraCanberraAustralian Capital TerritoryAustralia
| | - Alisha A. Shah
- W.K. Kellogg Biological Station, Department of Integrative BiologyMichigan State UniversityEast LansingMichiganUSA
| | - Jane Hughes
- School of Environment and ScienceGriffith UniversityNathanQueenslandAustralia
| | - N. LeRoy Poff
- Centre for Applied Water Science, Institute for Applied EcologyUniversity of CanberraCanberraAustralian Capital TerritoryAustralia
- Department of BiologyColorado State UniversityFort CollinsColoradoUSA
| | - Ross Thompson
- Centre for Applied Water Science, Institute for Applied EcologyUniversity of CanberraCanberraAustralian Capital TerritoryAustralia
| | - Ben J. Kefford
- Centre for Applied Water Science, Institute for Applied EcologyUniversity of CanberraCanberraAustralian Capital TerritoryAustralia
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22
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Smith AB, Ganguly DR, Moore M, Bowerman AF, Janapala Y, Shirokikh NE, Pogson BJ, Crisp PA. Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation. Plant J 2024; 117:818-839. [PMID: 37947266 PMCID: PMC10952913 DOI: 10.1111/tpj.16531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 09/20/2023] [Accepted: 10/23/2023] [Indexed: 11/12/2023]
Abstract
Transcript stability is an important determinant of its abundance and, consequently, translational output. Transcript destabilisation can be rapid and is well suited for modulating the cellular response. However, it is unclear the extent to which RNA stability is altered under changing environmental conditions in plants. We previously hypothesised that recovery-induced transcript destabilisation facilitated a phenomenon of rapid recovery gene downregulation (RRGD) in Arabidopsis thaliana (Arabidopsis) following light stress, based on mathematical calculations to account for ongoing transcription. Here, we test this hypothesis and investigate processes regulating transcript abundance and fate by quantifying changes in transcription, stability and translation before, during and after light stress. We adapt syringe infiltration to apply a transcriptional inhibitor to soil-grown plants in combination with stress treatments. Compared with measurements in juvenile plants and cell culture, we find reduced stability across a range of transcripts encoding proteins involved in RNA binding and processing. We also observe light-induced destabilisation of transcripts, followed by their stabilisation during recovery. We propose that this destabilisation facilitates RRGD, possibly in combination with transcriptional shut-off that was confirmed for HSP101, ROF1 and GOLS1. We also show that translation remains highly dynamic over the course of light stress and recovery, with a bias towards transcript-specific increases in ribosome association, independent of changes in total transcript abundance, after 30 min of light stress. Taken together, we provide evidence for the combinatorial regulation of transcription and stability that occurs to coordinate translation during light stress and recovery in Arabidopsis.
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Affiliation(s)
- Aaron B. Smith
- Research School of BiologyThe Australian National UniversityCanberraAustralian Capital Territory2601Australia
| | - Diep R. Ganguly
- CSIRO Synthetic Biology Future Science PlatformCanberraAustralian Capital Territory2601Australia
- Department of BiologyUniversity of PennsylvaniaPhiladelphiaPennsylvania19104USA
| | - Marten Moore
- Research School of BiologyThe Australian National UniversityCanberraAustralian Capital Territory2601Australia
| | - Andrew F. Bowerman
- Research School of BiologyThe Australian National UniversityCanberraAustralian Capital Territory2601Australia
| | - Yoshika Janapala
- Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery InstituteMonash UniversityClaytonVictoria3800Australia
| | - Nikolay E. Shirokikh
- The John Curtin School of Medical Research, The Shine‐Dalgarno Centre for RNA InnovationThe Australian National UniversityCanberraAustralian Capital Territory2601Australia
| | - Barry J. Pogson
- Research School of BiologyThe Australian National UniversityCanberraAustralian Capital Territory2601Australia
| | - Peter A. Crisp
- School of Agriculture and Food SciencesThe University of QueenslandBrisbaneQueensland4072Australia
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23
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Shishmarev D, Fontenelle CQ, Linclau B, Kuprov I, Kuchel PW. Quantitative Analysis of 2D EXSY NMR Spectra of Strongly Coupled Spin Systems in Transmembrane Exchange. Chembiochem 2024; 25:e202300597. [PMID: 37984465 PMCID: PMC10952724 DOI: 10.1002/cbic.202300597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2023] [Revised: 11/15/2023] [Accepted: 11/16/2023] [Indexed: 11/22/2023]
Abstract
Solute translocation by membrane transport proteins is a vital biological process that can be tracked, on the sub-second timescale, using nuclear magnetic resonance (NMR). Fluorinated substrate analogues facilitate such studies because of high sensitivity of 19 F NMR and absence of background signals. Accurate extraction of translocation rate constants requires precise quantification of NMR signal intensities. This becomes complicated in the presence of J-couplings, cross-correlations, and nuclear Overhauser effects (NOE) that alter signal integrals through mechanisms unrelated to translocation. Geminal difluorinated motifs introduce strong and hard-to-quantify contributions from non-exchange effects, the nuanced nature of which makes them hard to integrate into data analysis methodologies. With analytical expressions not being available, numerical least squares fitting of theoretical models to 2D spectra emerges as the preferred quantification approach. For large spin systems with simultaneous coherent evolution, cross-relaxation, cross-correlation, conformational exchange, and membrane translocation between compartments with different viscosities, the only available simulation framework is Spinach. In this study, we demonstrate GLUT-1 dependent membrane transport of two model sugars featuring CF2 and CF2 CF2 fluorination motifs, with precise determination of translocation rate constants enabled by numerical fitting of 2D EXSY spectra. For spin systems and kinetic networks of this complexity, this was not previously tractable.
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Affiliation(s)
- Dmitry Shishmarev
- The Australian National UniversityJohn Curtin School of Medical Research2601CanberraACTAustralia
- The Australian National UniversityResearch School of Biology2601CanberraACTAustralia
| | | | - Bruno Linclau
- University of SouthamptonDepartment of ChemistrySO17 1BJSouthamptonUK
- Department of Organic and Macromolecular ChemistryGhent UniversityCampus Sterre, Krijgslaan 281-S49000GhentBelgium
| | - Ilya Kuprov
- University of SouthamptonDepartment of ChemistrySO17 1BJSouthamptonUK
| | - Philip W. Kuchel
- The University of SydneySchool of Life and Environmental Sciences2006SydneyNSWAustralia
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24
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He Y, Goay ACY, Yuen ACY, Mishra D, Zhou Y, Lu T, Wang D, Liu Y, Boyer C, Wang CH, Zhang J. Bulk Schottky Junctions-Based Flexible Triboelectric Nanogenerators to Power Backscatter Communications in Green 6G Networks. Adv Sci (Weinh) 2024; 11:e2305829. [PMID: 38039442 PMCID: PMC10870046 DOI: 10.1002/advs.202305829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 10/21/2023] [Indexed: 12/03/2023]
Abstract
This work introduces a novel method to construct Schottky junctions to boost the output performance of triboelectric nanogenerators (TENGs). Perovskite barium zirconium titanate (BZT) core/metal silver shell nanoparticles are synthesized to be embedded into electrospun polyvinylidene fluoride-co-hexafluoropropylene (PVDF-HFP) nanofibers before they are used as tribo-negative layers. The output power of TENGs with composite fiber mat exhibited >600% increase compared to that with neat polymer fiber mat. The best TENG achieved 1339 V in open-circuit voltage, 40 µA in short-circuit current and 47.9 W m-2 in power density. The Schottky junctions increased charge carrier density in tribo-layers, ensuring a high charge transfer rate while keeping the content of conductive fillers low, thus avoiding charge loss and improving performance. These TENGs are utilized to power radio frequency identification (RFID) tags for backscatter communication (BackCom) systems, enabling ultra-massive connectivity in the 6G wireless networks and reducing information communications technology systems' carbon footprint. Specifically, TENGs are used to provide an additional energy source to the passive tags. Results show that TENGs can boost power for BackCom and increase the communication range by 386%. This timely contribution offers a novel route for sustainable 6G applications by exploiting the expanded communication range of BackCom tags.
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Affiliation(s)
- Yilin He
- School of Mechanical and Manufacturing EngineeringUniversity of New South WalesBuilding J17, KensingtonSydneyNSW2052Australia
| | - Amus Chee Yuen Goay
- School of Electrical Engineering and TelecommunicationsUniversity of New South Wales330 Anzac Parade, KensingtonSydneyNSW2033Australia
| | - Anthony Chun Yin Yuen
- Department of Building Environment and Energy EngineeringThe Hong Kong Polytechnic UniversityHung HomKowloonHong Kong SAR000China
| | - Deepak Mishra
- School of Electrical Engineering and TelecommunicationsUniversity of New South Wales330 Anzac Parade, KensingtonSydneyNSW2033Australia
| | - Yang Zhou
- School of Mechanical and Manufacturing EngineeringUniversity of New South WalesBuilding J17, KensingtonSydneyNSW2052Australia
| | - Teng Lu
- Research School of ChemistryAustralian National UniversityCollege of ScienceBuilding 137, Sullivans Creek RdActonACT2601Australia
| | - Danyang Wang
- School of Materials Science and EngineeringUniversity of New South WalesHilmer Building, KensingtonSydneyNSW2052Australia
| | - Yun Liu
- Research School of ChemistryAustralian National UniversityCollege of ScienceBuilding 137, Sullivans Creek RdActonACT2601Australia
| | - Cyrille Boyer
- School of Chemical EngineeringUniversity of New South WalesBuilding E8, KensingtonSydneyNSW2052Australia
| | - Chun H. Wang
- School of Mechanical and Manufacturing EngineeringUniversity of New South WalesBuilding J17, KensingtonSydneyNSW2052Australia
| | - Jin Zhang
- School of Mechanical and Manufacturing EngineeringUniversity of New South WalesBuilding J17, KensingtonSydneyNSW2052Australia
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25
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Borthwick Z, Quiring K, Griffith SC, Leu ST. Heat stress conditions affect the social network structure of free-ranging sheep. Ecol Evol 2024; 14:e10996. [PMID: 38352202 PMCID: PMC10862161 DOI: 10.1002/ece3.10996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Revised: 01/18/2024] [Accepted: 01/23/2024] [Indexed: 02/16/2024] Open
Abstract
Extreme weather conditions, like heatwave events, are becoming more frequent with climate change. Animals often modify their behaviour to cope with environmental changes and extremes. During heat stress conditions, individuals change their spatial behaviour and increase the use of shaded areas to assist with thermoregulation. Here, we suggest that for social species, these behavioural changes and ambient conditions have the potential to influence an individual's position in its social network, and the social network structure as a whole. We investigated whether heat stress conditions (quantified through the temperature humidity index) and the resulting use of shaded areas, influence the social network structure and an individual's connectivity in it. We studied this in free-ranging sheep in the arid zone of Australia, GPS-tracking all 48 individuals in a flock. When heat stress conditions worsened, individuals spent more time in the shade and the network was more connected (higher density) and less structured (lower modularity). Furthermore, we then identified the behavioural change that drove the altered network structure and showed that an individual's shade use behaviour affected its social connectivity. Interestingly, individuals with intermediate shade use were most strongly connected (degree, strength, betweenness), indicating their importance for the connectivity of the social network during heat stress conditions. Heat stress conditions, which are predicted to increase in severity and frequency due to climate change, influence resource use within the ecological environment. Importantly, our study shows that these heat stress conditions also affect the animal's social environment through the changed social network structure. Ultimately, this could have further flow on effects for social foraging and individual health since social structure drives information and disease transmission.
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Affiliation(s)
- Zachary Borthwick
- School of Animal and Veterinary SciencesThe University of AdelaideRoseworthySouth AustraliaAustralia
| | - Katrin Quiring
- School of Natural SciencesMacquarie UniversitySydneyNew South WalesAustralia
- Department of Behavioural EcologyUniversity of GöttingenGöttingenGermany
| | - Simon C. Griffith
- School of Natural SciencesMacquarie UniversitySydneyNew South WalesAustralia
- School of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyNew South WalesAustralia
| | - Stephan T. Leu
- School of Animal and Veterinary SciencesThe University of AdelaideRoseworthySouth AustraliaAustralia
- School of Natural SciencesMacquarie UniversitySydneyNew South WalesAustralia
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26
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Lau G, Mitra B, Gabbe BJ, Dietze PM, Reeder S, Cameron PA, Smit DV, Schneider HG, Symons E, Koolstra C, Stewart C, Beck B. Prevalence of alcohol and other drug detections in non-transport injury events. Emerg Med Australas 2024; 36:78-87. [PMID: 37717234 PMCID: PMC10952644 DOI: 10.1111/1742-6723.14312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Revised: 08/15/2023] [Accepted: 08/21/2023] [Indexed: 09/19/2023]
Abstract
OBJECTIVE To measure the prevalence of alcohol and/or other drug (AOD) detections in suspected major trauma patients with non-transport injuries who presented to an adult major trauma centre. METHODS This registry-based cohort study examined the prevalence of AOD detections in patients aged ≥18 years who: (i) sustained non-transport injuries; and (ii) met predefined trauma call-out criteria and were therefore managed by an interdisciplinary trauma team between 1 July 2021 and 31 December 2022. Prevalence was measured using routine in-hospital blood alcohol and urine drug screens. RESULTS A total of 1469 cases met the inclusion criteria. Of cases with a valid blood test (n = 1248, 85.0%), alcohol was detected in 313 (25.1%) patients. Of the 733 (49.9%) cases with urine drug screen results, cannabinoids were most commonly detected (n = 103, 14.1%), followed by benzodiazepines (n = 98, 13.4%), amphetamine-type substances (n = 80, 10.9%), opioids (n = 28, 3.8%) and cocaine (n = 17, 2.3%). Alcohol and/or at least one other drug was detected in 37.4% (n = 472) of cases with either a blood alcohol or urine drug test completed (n = 1263, 86.0%). Multiple substances were detected in 16.6% (n = 119) of cases with both blood alcohol and urine drug screens (n = 718, 48.9%). Detections were prevalent in cases of interpersonal violence (n = 123/179, 68.7%) and intentional self-harm (n = 50/106, 47.2%), and in those occurring on Friday and Saturday nights (n = 118/191, 61.8%). CONCLUSION AOD detections were common in trauma patients with non-transport injury causes. Population-level surveillance is needed to inform prevention strategies that address AOD use as a significant risk factor for serious injury.
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Affiliation(s)
- Georgina Lau
- School of Public Health and Preventive MedicineMonash UniversityMelbourneVictoriaAustralia
| | - Biswadev Mitra
- School of Public Health and Preventive MedicineMonash UniversityMelbourneVictoriaAustralia
- Emergency and Trauma CentreThe Alfred HospitalMelbourneVictoriaAustralia
| | - Belinda J Gabbe
- School of Public Health and Preventive MedicineMonash UniversityMelbourneVictoriaAustralia
- Health Data Research UK, Swansea University Medical SchoolSwansea UniversitySwanseaUK
| | - Paul M Dietze
- Disease Elimination Program, Burnet InstituteMelbourneVictoriaAustralia
- National Drug Research InstituteCurtin UniversityPerthWestern AustraliaAustralia
| | - Sandra Reeder
- School of Public Health and Preventive MedicineMonash UniversityMelbourneVictoriaAustralia
- Central Clinical SchoolMonash UniversityMelbourneVictoriaAustralia
| | - Peter A Cameron
- School of Public Health and Preventive MedicineMonash UniversityMelbourneVictoriaAustralia
- Emergency and Trauma CentreThe Alfred HospitalMelbourneVictoriaAustralia
| | - De Villiers Smit
- School of Public Health and Preventive MedicineMonash UniversityMelbourneVictoriaAustralia
- Emergency and Trauma CentreThe Alfred HospitalMelbourneVictoriaAustralia
- National Trauma Research InstituteThe Alfred HospitalMelbourneVictoriaAustralia
| | - Hans G Schneider
- School of Public Health and Preventive MedicineMonash UniversityMelbourneVictoriaAustralia
- Department of PathologyThe Alfred HospitalMelbourneVictoriaAustralia
| | - Evan Symons
- Alfred Mental and Addiction HealthThe Alfred HospitalMelbourneVictoriaAustralia
| | - Christine Koolstra
- School of Public Health and Preventive MedicineMonash UniversityMelbourneVictoriaAustralia
- Emergency and Trauma CentreThe Alfred HospitalMelbourneVictoriaAustralia
| | - Cara Stewart
- School of Public Health and Preventive MedicineMonash UniversityMelbourneVictoriaAustralia
- Emergency and Trauma CentreThe Alfred HospitalMelbourneVictoriaAustralia
| | - Ben Beck
- School of Public Health and Preventive MedicineMonash UniversityMelbourneVictoriaAustralia
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27
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Fickling NW, Abbott CA, Brame JE, Cando‐Dumancela C, Liddicoat C, Robinson JM, Breed MF. Light-dark cycles may influence in situ soil bacterial networks and diurnally-sensitive taxa. Ecol Evol 2024; 14:e11018. [PMID: 38357595 PMCID: PMC10864733 DOI: 10.1002/ece3.11018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Revised: 12/10/2023] [Accepted: 12/11/2023] [Indexed: 02/16/2024] Open
Abstract
Soil bacterial taxa have important functional roles in ecosystems (e.g. nutrient cycling, soil formation, plant health). Many factors influence their assembly and regulation, with land cover types (e.g. open woodlands, grasslands), land use types (e.g. nature reserves, urban green space) and plant-soil feedbacks being well-studied factors. However, changes in soil bacterial communities in situ over light-dark cycles have received little attention, despite many plants and some bacteria having endogenous circadian rhythms that could influence soil bacterial communities. We sampled surface soils in situ across 24-h light-dark cycles (at 00:00, 06:00, 12:00, 18:00) at two land cover types (remnant vegetation vs. cleared, grassy areas) and applied 16S rRNA amplicon sequencing to investigate changes in bacterial communities. We show that land cover type strongly affected soil bacterial diversity, with soils under native vegetation expressing 15.4%-16.4% lower alpha diversity but 4.9%-10.6% greater heterogeneity than soils under cleared vegetation. In addition, we report time-dependent and site-specific changes in bacterial network complexity and between 598-922 ASVs showing significant changes in relative abundance across times. Native site node degree (bacterial interactions) at the phylum level was 16.0% higher in the early morning than in the afternoon/evening. Our results demonstrate for the first time that light-dark cycles have subtle yet important effects on soil bacterial communities in situ and that land cover influences these dynamics. We provide a new view of soil microbial ecology and suggest that future studies should consider the time of day when sampling soil bacteria.
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Affiliation(s)
- Nicole W. Fickling
- College of Science and EngineeringFlinders UniversityBedford ParkSouth AustraliaAustralia
| | - Catherine A. Abbott
- College of Science and EngineeringFlinders UniversityBedford ParkSouth AustraliaAustralia
| | - Joel E. Brame
- College of Science and EngineeringFlinders UniversityBedford ParkSouth AustraliaAustralia
| | | | - Craig Liddicoat
- College of Science and EngineeringFlinders UniversityBedford ParkSouth AustraliaAustralia
| | - Jake M. Robinson
- College of Science and EngineeringFlinders UniversityBedford ParkSouth AustraliaAustralia
| | - Martin F. Breed
- College of Science and EngineeringFlinders UniversityBedford ParkSouth AustraliaAustralia
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28
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Chen Y, Palta JA. Editorial: Root structure and function adapting to climate change. Front Plant Sci 2024; 15:1365263. [PMID: 38322823 PMCID: PMC10844959 DOI: 10.3389/fpls.2024.1365263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Accepted: 01/15/2024] [Indexed: 02/08/2024]
Affiliation(s)
- Yinglong Chen
- School of Agriculture and Environment, and UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
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29
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Kuo A, Imam MZ, Li R, Lin L, Raboczyj A, Bohmer AE, Nicholson JR, Corradini L, Smith MT. J-2156, a small molecule somatostatin type 4 receptor agonist, alleviated hindpaw hypersensitivity in the streptozotocin-induced rat model of painful diabetic neuropathy but with a 2-fold decrease in potency at an advanced stage in the model, mimicking morphine. Front Pharmacol 2024; 15:1346801. [PMID: 38318132 PMCID: PMC10839067 DOI: 10.3389/fphar.2024.1346801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Accepted: 01/09/2024] [Indexed: 02/07/2024] Open
Abstract
There is a large unmet need for novel pain-killers to improve relief of painful diabetic neuropathy (PDN). Herein, we assessed the efficacy of the somatostatin type 4 (SST4) receptor agonist, J-2156, for relief of PDN in rats. Diabetes was induced with streptozotocin (STZ; 70 mg/kg) and bilateral hindpaw hypersensitivity was fully developed by 8-week post-STZ. In the intervals, 8-12-weeks (morphine-sensitive phase; Phase 1) and 16-18-weeks (morphine-hyposensitive phase; Phase 2) post-STZ, rats received a single dose of intraperitoneal (i.p.) J-2156 (10, 20, 30 mg/kg), gabapentin (100 mg/kg i.p.), subcutaneous morphine (1 mg/kg) or vehicle. Hindpaw withdrawal thresholds (PWTs) were assessed using von Frey filaments pre-dose and at regular intervals over 3-h post-dose. In Phase 1, J-2156 at 30 mg/kg evoked significant anti-allodynia in the hindpaws with maximal effect at 1.5 h compared with 1 h for gabapentin and morphine. The durations of action for all three compounds were greater than 3 h. The corresponding mean (±SEM) extent and duration of anti-allodynia (ΔPWT AUC) for gabapentin did not differ significantly from that for J-2156 (30 mg/kg) or morphine. However, in Phase 2, the ΔPWT AUC for morphine was reduced to approximately 25% of that in Phase 1, mirroring our previous work. Similarly, the mean (±SEM) ΔPWT AUC for J-2156 (30 mg/kg) in Phase 2 was approximately 45% of that for Phase 1 whereas for gabapentin the mean (±SEM) ΔPWT AUCs did not differ significantly (p > 0.05) between the two phases. Our findings further describe the preclinical pain relief profile of J-2156 and complement previous work in rat models of inflammatory pain, neuropathic pain and low back pain. SST4 receptor agonists hold promise as novel therapeutics for the relief of PDN, a type of peripheral neuropathic pain that is often intractable to relief with clinically used drug treatment options.
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Affiliation(s)
- A. Kuo
- School of Biomedical Sciences, Faculty of Medicine, The University of Queensland, St Lucia, QLD, Australia
| | - M. Z. Imam
- School of Biomedical Sciences, Faculty of Medicine, The University of Queensland, St Lucia, QLD, Australia
| | - R. Li
- School of Biomedical Sciences, Faculty of Medicine, The University of Queensland, St Lucia, QLD, Australia
| | - L. Lin
- School of Biomedical Sciences, Faculty of Medicine, The University of Queensland, St Lucia, QLD, Australia
| | - A. Raboczyj
- School of Biomedical Sciences, Faculty of Medicine, The University of Queensland, St Lucia, QLD, Australia
| | - A. E. Bohmer
- School of Biomedical Sciences, Faculty of Medicine, The University of Queensland, St Lucia, QLD, Australia
| | - J. R. Nicholson
- Boehringer Ingelheim Pharma GmbH & Co. KG, Biberach an der Riss, Germany
| | - L. Corradini
- Boehringer Ingelheim Pharma GmbH & Co. KG, Biberach an der Riss, Germany
| | - M. T. Smith
- School of Biomedical Sciences, Faculty of Medicine, The University of Queensland, St Lucia, QLD, Australia
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30
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Baldi BF, Vuong J, O’Donoghue SI. Assessing 2D visual encoding of 3D spatial connectivity. Front Bioinform 2024; 3:1232671. [PMID: 38323038 PMCID: PMC10845337 DOI: 10.3389/fbinf.2023.1232671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Accepted: 12/21/2023] [Indexed: 02/08/2024] Open
Abstract
Introduction: When visualizing complex data, the layout method chosen can greatly affect the ability to identify outliers, spot incorrect modeling assumptions, or recognize unexpected patterns. Additionally, visual layout can play a crucial role in communicating results to peers. Methods: In this paper, we compared the effectiveness of three visual layouts-the adjacency matrix, a half-matrix layout, and a circular layout-for visualizing spatial connectivity data, e.g., contacts derived from chromatin conformation capture experiments. To assess these visual layouts, we conducted a study comprising 150 participants from Amazon's Mechanical Turk, as well as a second expert study comprising 30 biomedical research scientists. Results: The Mechanical Turk study found that the circular layout was the most accurate and intuitive, while the expert study found that the circular and half-matrix layouts were more accurate than the matrix layout. Discussion: We concluded that the circular layout may be a good default choice for visualizing smaller datasets with relatively few spatial contacts, while, for larger datasets, the half- matrix layout may be a better choice. Our results also demonstrated how crowdsourcing methods could be used to determine which visual layouts are best for addressing specific data challenges in bioinformatics.
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Affiliation(s)
| | - Jenny Vuong
- The Garvan Institute of Medical Research, Darlinghurst, NSW, Australia
- CSIRO Data61, Eveleigh, NSW, Australia
| | - Seán I. O’Donoghue
- The Garvan Institute of Medical Research, Darlinghurst, NSW, Australia
- CSIRO Data61, Eveleigh, NSW, Australia
- School of Biotechnology and Biomolecular Sciences, University of New South Wales, Kennsington, NSW, Australia
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31
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Kim C, Goudeli E, Ercole F, Ju Y, Gu Y, Xu W, Quinn JF, Caruso F. Particle Engineering via Supramolecular Assembly of Macroscopic Hydrophobic Building Blocks. Angew Chem Int Ed Engl 2024; 63:e202315297. [PMID: 37945544 PMCID: PMC10953382 DOI: 10.1002/anie.202315297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 10/30/2023] [Accepted: 11/09/2023] [Indexed: 11/12/2023]
Abstract
Tailoring the hydrophobicity of supramolecular assembly building blocks enables the fabrication of well-defined functional materials. However, the selection of building blocks used in the assembly of metal-phenolic networks (MPNs), an emerging supramolecular assembly platform for particle engineering, has been essentially limited to hydrophilic molecules. Herein, we synthesized and applied biscatechol-functionalized hydrophobic polymers (poly(methyl acrylate) (PMA) and poly(butyl acrylate) (PBA)) as building blocks to engineer MPN particle systems (particles and capsules). Our method allowed control over the shell thickness (e.g., between 10 and 21 nm), stiffness (e.g., from 10 to 126 mN m-1 ), and permeability (e.g., 28-72 % capsules were permeable to 500 kDa fluorescein isothiocyanate-dextran) of the MPN capsules by selection of the hydrophobic polymer building blocks (PMA or PBA) and by controlling the polymer concentration in the MPN assembly solution (0.25-2.0 mM) without additional/engineered assembly processes. Molecular dynamics simulations provided insights into the structural states of the hydrophobic building blocks during assembly and mechanism of film formation. Furthermore, the hydrophobic MPNs facilitated the preparation of fluorescent-labeled and bioactive capsules through postfunctionalization and also particle-cell association engineering by controlling the hydrophobicity of the building blocks. Engineering MPN particle systems via building block hydrophobicity is expected to expand their use.
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Affiliation(s)
- Chan‐Jin Kim
- Department of Chemical EngineeringThe University of MelbourneParkvilleVictoria3010Australia
| | - Eirini Goudeli
- Department of Chemical EngineeringThe University of MelbourneParkvilleVictoria3010Australia
| | - Francesca Ercole
- Drug DeliveryDisposition and Dynamics ThemeMonash Institute of Pharmaceutical SciencesMonash UniversityParkvilleVictoria3052Australia
| | - Yi Ju
- Department of Chemical EngineeringThe University of MelbourneParkvilleVictoria3010Australia
- School of ScienceRMIT UniversityMelbourneVictoria3000Australia
| | - Yuang Gu
- Department of Chemical EngineeringThe University of MelbourneParkvilleVictoria3010Australia
| | - Wanjun Xu
- Department of Chemical EngineeringThe University of MelbourneParkvilleVictoria3010Australia
| | - John F. Quinn
- Drug DeliveryDisposition and Dynamics ThemeMonash Institute of Pharmaceutical SciencesMonash UniversityParkvilleVictoria3052Australia
- Department of Chemical EngineeringFaculty of EngineeringMonash UniversityClaytonVictoria3800Australia
| | - Frank Caruso
- Department of Chemical EngineeringThe University of MelbourneParkvilleVictoria3010Australia
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Li X, Tang S, Zhang Y, Zhu J, Forgham H, Zhao C, Zhang C, Davis TP, Qiao R. Tailored Fluorosurfactants through Controlled/Living Radical Polymerization for Highly Stable Microfluidic Droplet Generation. Angew Chem Int Ed Engl 2024; 63:e202315552. [PMID: 38038248 PMCID: PMC10952479 DOI: 10.1002/anie.202315552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 12/01/2023] [Accepted: 12/01/2023] [Indexed: 12/02/2023]
Abstract
Droplet-based microfluidics represents a disruptive technology in the field of chemistry and biology through the generation and manipulation of sub-microlitre droplets. To avoid droplet coalescence, fluoropolymer-based surfactants are commonly used to reduce the interfacial tension between two immiscible phases to stabilize droplet interfaces. However, the conventional preparation of fluorosurfactants involves multiple steps of conjugation reactions between fluorinated and hydrophilic segments to form multiple-block copolymers. In addition, synthesis of customized surfactants with tailored properties is challenging due to the complex synthesis process. Here, we report a highly efficient synthetic method that utilizes living radical polymerization (LRP) to produce fluorosurfactants with tailored functionalities. Compared to the commercialized surfactant, our surfactants outperform in thermal cycling for polymerase chain reaction (PCR) testing, and exhibit exceptional biocompatibility for cell and yeast culturing in a double-emulsion system. This breakthrough synthetic approach has the potential to revolutionize the field of droplet-based microfluidics by enabling the development of novel designs that generate droplets with superior stability and functionality for a wide range of applications.
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Affiliation(s)
- Xiangke Li
- Australian Institute of Bioengineering and NanotechnologyThe University of QueenslandBrisbane, Queensland4072Australia
| | - Shi‐Yang Tang
- School of Electronics and Computer ScienceUniversity of SouthamptonSouthamptonSO17 1BJUK
| | - Yang Zhang
- School of Engineering, Faculty of Science and EngineeringMacquarie UniversitySydney, NSW2109Australia
| | - Jiayuan Zhu
- Australian Institute of Bioengineering and NanotechnologyThe University of QueenslandBrisbane, Queensland4072Australia
| | - Helen Forgham
- Australian Institute of Bioengineering and NanotechnologyThe University of QueenslandBrisbane, Queensland4072Australia
| | - Chun‐Xia Zhao
- Australian Institute of Bioengineering and NanotechnologyThe University of QueenslandBrisbane, Queensland4072Australia
- School of Chemical Engineering and Advanced MaterialsThe University of AdelaideAdelaide, SA5005Australia
| | - Cheng Zhang
- Australian Institute of Bioengineering and NanotechnologyThe University of QueenslandBrisbane, Queensland4072Australia
| | - Thomas P. Davis
- Australian Institute of Bioengineering and NanotechnologyThe University of QueenslandBrisbane, Queensland4072Australia
| | - Ruirui Qiao
- Australian Institute of Bioengineering and NanotechnologyThe University of QueenslandBrisbane, Queensland4072Australia
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Ramanujam V, Crawford T, Cristofori‐Armstrong B, Deuis JR, Jia X, Maxwell MJ, Jami S, Ma L, Vetter I, Mobli M. Structural Basis of the Bivalency of the TRPV1 Agonist DkTx. Angew Chem Int Ed Engl 2024; 63:e202314621. [PMID: 37953402 PMCID: PMC10952689 DOI: 10.1002/anie.202314621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 11/08/2023] [Accepted: 11/10/2023] [Indexed: 11/14/2023]
Abstract
Bivalency is a prevalent natural mechanism to enhance receptor avidity. Various two-domain disulfide-rich peptides exhibiting bivalent action have been identified from animal venoms. A unique characteristic of these peptides is that they induce a pharmacological response different from that provoked by any of the constituent domains. The enhanced potency and avidity of such peptides is therefore a consequence of their domain fusion by a peptide linker. The role of the linker itself, beyond conjugation, remains unclear. Here, we investigate how the linker affects the bivalency of the capsaicin receptor (TRPV1) agonist DkTx. We recombinantly produced isotope labelled DkTx using a protein splicing approach, to solve the high-resolution solution structure of DkTx, revealing residual linker order stabilised by linker-domain interactions leading to biased domain orientations. The significance of this was studied using a combination of mutagenesis, spin relaxation studies and electrophysiology measurements. Our results reveal that disrupting the pre-organisation of the domains of DkTx is accompanied by reductions in potency and onset of avidity. Our findings support a model of pre-configured two-domain binding, in favour of the previously suggested sequential binding model. This highlights the significance of ordered elements in linker design and the natural evolution of these in bivalent toxins.
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Affiliation(s)
- Venkatraman Ramanujam
- Australian Institute for Bioengineering and NanotechnologyThe University of QueenslandSt Lucia4072QueenslandAustralia
| | - Theo Crawford
- Australian Institute for Bioengineering and NanotechnologyThe University of QueenslandSt Lucia4072QueenslandAustralia
| | - Ben Cristofori‐Armstrong
- Australian Institute for Bioengineering and NanotechnologyThe University of QueenslandSt Lucia4072QueenslandAustralia
| | - Jennifer R. Deuis
- Institute for Molecular BiosciencesSchool of PharmacyThe University of QueenslandSt Lucia4072QueenslandAustralia
| | - Xinying Jia
- Australian Institute for Bioengineering and NanotechnologyThe University of QueenslandSt Lucia4072QueenslandAustralia
| | - Michael J. Maxwell
- Australian Institute for Bioengineering and NanotechnologyThe University of QueenslandSt Lucia4072QueenslandAustralia
| | - Sina Jami
- Institute for Molecular BiosciencesSchool of PharmacyThe University of QueenslandSt Lucia4072QueenslandAustralia
| | - Linlin Ma
- Griffith Institute for Drug DiscoverySchool of Environment and ScienceGriffith UniversityNathan4111QueenslandAustralia
| | - Irina Vetter
- Institute for Molecular BiosciencesSchool of PharmacyThe University of QueenslandSt Lucia4072QueenslandAustralia
| | - Mehdi Mobli
- Australian Institute for Bioengineering and NanotechnologyThe University of QueenslandSt Lucia4072QueenslandAustralia
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Pitman EL, Counihan NA, Modak JK, Chowdury M, Gilson PR, Webb CT, de Koning-Ward TF. Dissecting EXP2 sequence requirements for protein export in malaria parasites. Front Cell Infect Microbiol 2024; 13:1332146. [PMID: 38282616 PMCID: PMC10811066 DOI: 10.3389/fcimb.2023.1332146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Accepted: 12/19/2023] [Indexed: 01/30/2024] Open
Abstract
Apicomplexan parasites that reside within a parasitophorous vacuole harbor a conserved pore-forming protein that enables small-molecule transfer across the parasitophorous vacuole membrane (PVM). In Plasmodium parasites that cause malaria, this nutrient pore is formed by EXP2 which can complement the function of GRA17, an orthologous protein in Toxoplasma gondii. EXP2, however, has an additional function in Plasmodium parasites, serving also as the pore-forming component of the protein export machinery PTEX. To examine how EXP2 can play this additional role, transgenes that encoded truncations of EXP2, GRA17, hybrid GRA17-EXP2, or EXP2 under the transcriptional control of different promoters were expressed in EXP2 knockdown parasites to determine which could complement EXP2 function. This revealed that EXP2 is a unique pore-forming protein, and its protein export role in P. falciparum cannot be complemented by T. gondii GRA17. This was despite the addition of the EXP2 assembly strand and part of the linker helix to GRA17, which are regions necessary for the interaction of EXP2 with the other core PTEX components. This indicates that the body region of EXP2 plays a critical role in PTEX assembly and/or that the absence of other T. gondii GRA proteins in P. falciparum leads to its reduced efficiency of insertion into the PVM and complementation potential. Altering the timing and abundance of EXP2 expression did not affect protein export but affected parasite viability, indicating that the unique transcriptional profile of EXP2 when compared to other PTEX components enables it to serve an additional role in nutrient exchange.
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Affiliation(s)
- Ethan L. Pitman
- School of Medicine, Deakin University, Geelong, VIC, Australia
- Institute for Mental and Physical Health and Clinical Translation (IMPACT), Deakin University, Geelong, VIC, Australia
| | - Natalie A. Counihan
- School of Medicine, Deakin University, Geelong, VIC, Australia
- Institute for Mental and Physical Health and Clinical Translation (IMPACT), Deakin University, Geelong, VIC, Australia
| | - Joyanta K. Modak
- School of Medicine, Deakin University, Geelong, VIC, Australia
- Institute for Mental and Physical Health and Clinical Translation (IMPACT), Deakin University, Geelong, VIC, Australia
| | - Mrittika Chowdury
- School of Medicine, Deakin University, Geelong, VIC, Australia
- Institute for Mental and Physical Health and Clinical Translation (IMPACT), Deakin University, Geelong, VIC, Australia
| | - Paul R. Gilson
- Burnet Institute, Melbourne, VIC, Australia
- Department of Microbiology and Immunology, University of Melbourne, Parkville, VIC, Australia
| | - Chaille T. Webb
- Biomedicine Discovery Institute and Department of Microbiology, Monash University, Clayton, VIC, Australia
- Centre to Impact AMR, Monash University, Clayton, VIC, Australia
| | - Tania F. de Koning-Ward
- School of Medicine, Deakin University, Geelong, VIC, Australia
- Institute for Mental and Physical Health and Clinical Translation (IMPACT), Deakin University, Geelong, VIC, Australia
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35
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Mahmood A, Zheng Z, Chen Y. Zinc-Bromine Batteries: Challenges, Prospective Solutions, and Future. Adv Sci (Weinh) 2024; 11:e2305561. [PMID: 37988707 PMCID: PMC10797452 DOI: 10.1002/advs.202305561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 09/22/2023] [Indexed: 11/23/2023]
Abstract
Zinc-bromine batteries (ZBBs) have recently gained significant attention as inexpensive and safer alternatives to potentially flammable lithium-ion batteries. Zn metal is relatively stable in aqueous electrolytes, making ZBBs safer and easier to handle. However, Zn metal anodes are still affected by several issues, including dendrite growth, Zn dissolution, and the crossover of Br species from cathodes to corrode anodes, resulting in self-discharge and fast performance fading. Similarly, Br2 undergoes sluggish redox reactions on cathodes, which brings several issues such as poor reaction kinetics, the highly corrosive nature of Br species leading to corrosion of separators and poisoning of anodes, and the volatile nature of Br species causing increased internal pressures, etc. These issues are compounded in flowless ZBB configuration as no fresh electrolyte is available to provide extra/fresh reaction species. In this review, the factors controlling the performance of ZBBs in flow and flowless configurations are thoroughly reviewed, along with the status of ZBBs in the commercial sector. The review also summarizes various novel methodologies to mitigate these challenges and presents research areas for future studies. In summary, this review will offer a perspective on the historical evolution, recent advancements, and prospects of ZBBs.
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Affiliation(s)
- Asif Mahmood
- School of Chemical and Biomolecular EngineeringThe University of SydneyDarlingtonNSW2006Australia
- Center for Clean Energy TechnologySchool of Mathematical and Physical ScienceFaculty of ScienceUniversity of Technology SydneySydney2007Australia
| | - Zhi Zheng
- School of Chemical and Biomolecular EngineeringThe University of SydneyDarlingtonNSW2006Australia
| | - Yuan Chen
- School of Chemical and Biomolecular EngineeringThe University of SydneyDarlingtonNSW2006Australia
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36
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Li X, Liu H, Lin Z, Richardson JJ, Xie W, Chen F, Lin W, Caruso F, Zhou J, Liu B. Cytoprotective Metal-Phenolic Network Sporulation to Modulate Microalgal Mobility and Division. Adv Sci (Weinh) 2024; 11:e2308026. [PMID: 38014599 PMCID: PMC10797472 DOI: 10.1002/advs.202308026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Indexed: 11/29/2023]
Abstract
Synthetic cell exoskeletons created from abiotic materials have attracted interest in materials science and biotechnology, as they can regulate cell behavior and create new functionalities. Here, a facile strategy is reported to mimic microalgal sporulation with on-demand germination and locomotion via responsive metal-phenolic networks (MPNs). Specifically, MPNs with tunable thickness and composition are deposited on the surface of microalgae cells via one-step coordination, without any loss of cell viability or intrinsic cell photosynthetic properties. The MPN coating keeps the cells in a dormant state, but can be disassembled on-demand in response to environmental pH or chemical stimulus, thereby reviving the microalgae within 1 min. Moreover, the artificial sporulation of microalgae resulted in resistance to environmental stresses (e.g., metal ions and antibiotics) akin to the function of natural sporulation. This strategy can regulate the life cycle of complex cells, providing a synthetic strategy for designing hybrid microorganisms.
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Affiliation(s)
- Xiaojie Li
- Shenzhen Key Laboratory of Marine Microbiome EngineeringShenzhen Key Laboratory of Food Nutrition and HealthInstitute for Advanced StudyCollege of Chemistry and Environmental EngineeringShenzhen UniversityShenzhen518060China
| | - Hai Liu
- College of Biomass Science and EngineeringKey Laboratory of Leather Chemistry and Engineering of Ministry of EducationNational Engineering Laboratory for Clean Technology of Leather ManufactureSichuan UniversityChengdu610065China
| | - Zhixing Lin
- Department of Chemical EngineeringThe University of MelbourneParkvilleVictoria3010Australia
| | - Joseph J. Richardson
- Department of Chemical and Environmental EngineeringRMIT UniversityMelbourneVictoria3000Australia
| | - Weiying Xie
- Shenzhen Key Laboratory of Marine Microbiome EngineeringShenzhen Key Laboratory of Food Nutrition and HealthInstitute for Advanced StudyCollege of Chemistry and Environmental EngineeringShenzhen UniversityShenzhen518060China
| | - Feng Chen
- Shenzhen Key Laboratory of Marine Microbiome EngineeringShenzhen Key Laboratory of Food Nutrition and HealthInstitute for Advanced StudyCollege of Chemistry and Environmental EngineeringShenzhen UniversityShenzhen518060China
| | - Wei Lin
- College of Biomass Science and EngineeringKey Laboratory of Leather Chemistry and Engineering of Ministry of EducationNational Engineering Laboratory for Clean Technology of Leather ManufactureSichuan UniversityChengdu610065China
| | - Frank Caruso
- Department of Chemical EngineeringThe University of MelbourneParkvilleVictoria3010Australia
| | - Jiajing Zhou
- College of Biomass Science and EngineeringKey Laboratory of Leather Chemistry and Engineering of Ministry of EducationNational Engineering Laboratory for Clean Technology of Leather ManufactureSichuan UniversityChengdu610065China
| | - Bin Liu
- Shenzhen Key Laboratory of Marine Microbiome EngineeringShenzhen Key Laboratory of Food Nutrition and HealthInstitute for Advanced StudyCollege of Chemistry and Environmental EngineeringShenzhen UniversityShenzhen518060China
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37
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Gabriela M, Barnes CBG, Leong D, Sleebs BE, Schneider MP, Littler DR, Crabb BS, de Koning‐Ward TF, Gilson PR. Sequence elements within the PEXEL motif and its downstream region modulate PTEX-dependent protein export in Plasmodium falciparum. Traffic 2024; 25:e12922. [PMID: 37926971 PMCID: PMC10952997 DOI: 10.1111/tra.12922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Revised: 08/23/2023] [Accepted: 10/15/2023] [Indexed: 11/07/2023]
Abstract
The parasite Plasmodium falciparum causes the most severe form of malaria and to invade and replicate in red blood cells (RBCs), it exports hundreds of proteins across the encasing parasitophorous vacuole membrane (PVM) into this host cell. The exported proteins help modify the RBC to support rapid parasite growth and avoidance of the human immune system. Most exported proteins possess a conserved Plasmodium export element (PEXEL) motif with the consensus RxLxE/D/Q amino acid sequence, which acts as a proteolytic cleavage recognition site within the parasite's endoplasmic reticulum (ER). Cleavage occurs after the P1 L residue and is thought to help release the protein from the ER so it can be putatively escorted by the HSP101 chaperone to the parasitophorous vacuole space surrounding the intraerythrocytic parasite. HSP101 and its cargo are then thought to assemble with the rest of a Plasmodium translocon for exported proteins (PTEX) complex, that then recognises the xE/D/Q capped N-terminus of the exported protein and translocates it across the vacuole membrane into the RBC compartment. Here, we present evidence that supports a dual role for the PEXEL's conserved P2 ' position E/Q/D residue, first, for plasmepsin V cleavage in the ER, and second, for efficient PTEX mediated export across the PVM into the RBC. We also present evidence that the downstream 'spacer' region separating the PEXEL motif from the folded functional region of the exported protein controls cargo interaction with PTEX as well. The spacer must be of a sufficient length and permissive amino acid composition to engage the HSP101 unfoldase component of PTEX to be efficiently translocated into the RBC compartment.
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Affiliation(s)
- Mikha Gabriela
- Malaria Virulence and Drug Discovery GroupBurnet InstituteMelbourneVictoriaAustralia
- School of MedicineDeakin UniversityGeelongVictoriaAustralia
| | - Claudia B. G. Barnes
- Malaria Virulence and Drug Discovery GroupBurnet InstituteMelbourneVictoriaAustralia
| | - Dickson Leong
- Malaria Virulence and Drug Discovery GroupBurnet InstituteMelbourneVictoriaAustralia
| | - Brad E. Sleebs
- The Walter and Eliza Hall Institute of Medical ResearchParkvilleVictoriaAustralia
- Department of Medical BiologyThe University of MelbourneParkvilleVictoriaAustralia
| | | | - Dene R. Littler
- Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery InstituteMonash UniversityClaytonVictoriaAustralia
| | - Brendan S. Crabb
- Malaria Virulence and Drug Discovery GroupBurnet InstituteMelbourneVictoriaAustralia
- Department of Medical BiologyThe University of MelbourneParkvilleVictoriaAustralia
- Department of Microbiology and ImmunologyUniversity of MelbourneParkvilleVictoriaAustralia
- Department of ImmunologyMonash UniversityMelbourneVictoriaAustralia
| | - Tania F. de Koning‐Ward
- School of MedicineDeakin UniversityGeelongVictoriaAustralia
- Institute for Mental and Physical Health and Clinical Translation (IMPACT)Deakin UniversityGeelongVictoriaAustralia
| | - Paul R. Gilson
- Malaria Virulence and Drug Discovery GroupBurnet InstituteMelbourneVictoriaAustralia
- Department of Microbiology and ImmunologyUniversity of MelbourneParkvilleVictoriaAustralia
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Turner KM, Balleine BW. Stimulus control of habits: Evidence for both stimulus specificity and devaluation insensitivity in a dual-response task. J Exp Anal Behav 2024; 121:52-61. [PMID: 38100179 PMCID: PMC10953355 DOI: 10.1002/jeab.898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 12/01/2023] [Indexed: 12/21/2023]
Abstract
Goal-directed and habitual actions are clearly defined by their associative relations. Whereas goal-directed control can be confirmed via tests of outcome devaluation and contingency-degradation sensitivity, a comparable criterion for positively detecting habits has not been established. To confirm habitual responding, a test of control by the stimulus-response association is required while also ruling out goal-directed control. Here we describe an approach to developing such a test in rats using two discriminative stimuli that set the occasion for two different responses that then earn the same outcome. Performance was insensitive to outcome devaluation and showed stimulus-response specificity, indicative of stimulus-controlled behavior. The reliance of stimulus-response associations was further supported by a lack of sensitivity during the single extinction test session used here. These results demonstrate that two concurrently trained responses can come under habitual control when they share a common outcome. By reducing the ability of one stimulus to signal its corresponding response-outcome association, we found evidence for goal-directed control that can be dissociated from habits. Overall, these experiments provide evidence that tests assessing specific stimulus-response associations can be used to investigate habits.
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Affiliation(s)
- K. M. Turner
- School of PsychologyUniversity of New South WalesSydneyAustralia
| | - B. W. Balleine
- School of PsychologyUniversity of New South WalesSydneyAustralia
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McIntosh JE, Opie J, Greenwood CJ, Booth A, Tan E, Painter F, Messer M, Macdonald JA, Letcher P, Olsson CA. Infant and preschool attachment, continuity and relationship to caregiving sensitivity: findings from a new population-based Australian cohort. J Child Psychol Psychiatry 2024; 65:64-76. [PMID: 37501531 PMCID: PMC10952519 DOI: 10.1111/jcpp.13865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 06/14/2023] [Indexed: 07/29/2023]
Abstract
BACKGROUND Here, we report new prevalence and temporal stability data for child attachment and parental caregiving behaviour, from infancy (1 year) to preschool (4 years). METHODS Attachment (SSP) and caregiving data (MBQS) were from observations of parents and their infants and preschoolers, who represent the third generation of participants within an Australian longitudinal cohort. RESULTS At 1 year (n = 314 dyads) and at 4 years (n = 368 dyads), proportions assessed secure were 59% and 71%, respectively. Proportions assessed avoidant were 15% and 11%; ambivalent 9% and 6%, and disorganised 17% and 12%, at 1 and 4 years. Continuity of attachment pattern was highest for the infant secure group. Of dyads initially classified disorganised in infancy, 36% remained so at the preschool assessment. Attachment and caregiving continuities across the infancy-preschool period were highest for the stable secure attachment group and lowest for the stable insecure attachment group. Loss of secure attachment to mother by age 4 years correlated with decreased maternal caregiving sensitivity, and acquisition of secure status by age 4 was associated with increased maternal sensitivity. We found no difference in caregiving sensitivity scores for mothers and fathers for female and male preschool children. CONCLUSIONS The contemporary infant and preschool attachment proportions we report here closely mirror the patterns of those reported in prior decades, with an inclination towards secure base relationships. Our findings alert practitioners anew to the responsiveness of early attachment status to change in caregiving responsiveness and support ongoing investment in early identification of disorganised attachment.
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Affiliation(s)
- Jennifer E. McIntosh
- The Bouverie Centre, School of Psychology and Public HealthLa Trobe UniversityBundooraVICAustralia
- Centre for Social and Early Emotional Development, School of Psychology, Faculty of HealthDeakin UniversityGeelongVICAustralia
| | - Jessica Opie
- The Bouverie Centre, School of Psychology and Public HealthLa Trobe UniversityBundooraVICAustralia
| | - Christopher J. Greenwood
- Centre for Social and Early Emotional Development, School of Psychology, Faculty of HealthDeakin UniversityGeelongVICAustralia
- Centre for Adolescent HealthMurdoch Children's Research InstituteParkvilleVICAustralia
- Department of Paediatrics, Royal Children's HospitalThe University of MelbourneParkvilleVICAustralia
| | - Anna Booth
- The Bouverie Centre, School of Psychology and Public HealthLa Trobe UniversityBundooraVICAustralia
| | - Evelyn Tan
- Centre for Evidence and Implementation – GlobalSingaporeSingapore
| | - Felicity Painter
- The Bouverie Centre, School of Psychology and Public HealthLa Trobe UniversityBundooraVICAustralia
| | - Mariel Messer
- Centre for Social and Early Emotional Development, School of Psychology, Faculty of HealthDeakin UniversityGeelongVICAustralia
| | - Jacqui A. Macdonald
- Centre for Social and Early Emotional Development, School of Psychology, Faculty of HealthDeakin UniversityGeelongVICAustralia
- Centre for Adolescent HealthMurdoch Children's Research InstituteParkvilleVICAustralia
- Department of Paediatrics, Royal Children's HospitalThe University of MelbourneParkvilleVICAustralia
| | - Primrose Letcher
- Centre for Social and Early Emotional Development, School of Psychology, Faculty of HealthDeakin UniversityGeelongVICAustralia
- Centre for Adolescent HealthMurdoch Children's Research InstituteParkvilleVICAustralia
- Department of Paediatrics, Royal Children's HospitalThe University of MelbourneParkvilleVICAustralia
| | - Craig A. Olsson
- Centre for Social and Early Emotional Development, School of Psychology, Faculty of HealthDeakin UniversityGeelongVICAustralia
- Centre for Adolescent HealthMurdoch Children's Research InstituteParkvilleVICAustralia
- Department of Paediatrics, Royal Children's HospitalThe University of MelbourneParkvilleVICAustralia
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40
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Heinzel S, Cheon H, Belz GT, Hodgkin PD. Survival and division fate programs are preserved but retuned during the naïve to memory CD8 + T-cell transition. Immunol Cell Biol 2024; 102:46-57. [PMID: 37840018 PMCID: PMC10952575 DOI: 10.1111/imcb.12699] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Revised: 09/20/2023] [Accepted: 09/21/2023] [Indexed: 10/17/2023]
Abstract
Memory T cells are generated from naïve precursors undergoing proliferation during the initial immune response. Both naïve and memory T cells are maintained in a resting, quiescent state and respond to activation with a controlled proliferative burst and differentiation into effector cells. This similarity in the maintenance and response dynamics points to the preservation of key cellular fate programs; however, whether memory T cells have acquired intrinsic changes in these programs that may contribute to the enhanced immune protection in a recall response is not fully understood. Here we used a quantitative model-based analysis of proliferation and survival kinetics of in vitro-stimulated murine naïve and memory CD8+ T cells in response to homeostatic and activating signals to establish intrinsic similarities or differences within these cell types. We show that resting memory T cells display heightened sensitivity to homeostatic cytokines, responding to interleukin (IL)-2 in addition to IL-7 and IL-15. The proliferative response to αCD3 was equal in size and kinetics, demonstrating that memory T cells undergo the same controlled division burst and automated return to quiescence as naïve T cells. However, perhaps surprisingly, we observed reduced expansion of αCD3-stimulated memory T cells in response to activating signals αCD28 and IL-2 compared with naïve T cells. Overall, we demonstrate that although sensitivities to cytokine and costimulatory signals have shifted, fate programs regulating the scale of the division burst are conserved in memory T cells.
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Affiliation(s)
- Susanne Heinzel
- Immunology DivisionWalter and Eliza Hall Institute of Medical ResearchParkvilleVICAustralia
- Department of Medical BiologyThe University of MelbourneParkvilleVICAustralia
| | - HoChan Cheon
- Immunology DivisionWalter and Eliza Hall Institute of Medical ResearchParkvilleVICAustralia
| | - Gabrielle T Belz
- Immunology DivisionWalter and Eliza Hall Institute of Medical ResearchParkvilleVICAustralia
- Department of Medical BiologyThe University of MelbourneParkvilleVICAustralia
- Frazer InstituteThe University of QueenslandBrisbaneQLDAustralia
| | - Philip D Hodgkin
- Immunology DivisionWalter and Eliza Hall Institute of Medical ResearchParkvilleVICAustralia
- Department of Medical BiologyThe University of MelbourneParkvilleVICAustralia
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41
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Robinson AH, Mahlberg J, Chong TT, Verdejo‐Garcia A. Model-based and model-free mechanisms in methamphetamine use disorder. Addict Biol 2024; 29:e13356. [PMID: 38221809 PMCID: PMC10898847 DOI: 10.1111/adb.13356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2022] [Revised: 09/15/2023] [Accepted: 10/24/2023] [Indexed: 01/16/2024]
Abstract
People with methamphetamine use disorder (MUD) struggle to shift their behaviour from methamphetamine-orientated habits to goal-oriented choices. The model-based/model-free framework is well suited to understand this difficulty by unpacking the computational mechanisms that support experienced-based (model-free) and goal-directed (model-based) choices. We aimed to examine whether 1) participants with MUD differed from controls on behavioural proxies and/or computational mechanisms of model-based/model-free choices; 2) model-based/model-free decision-making correlated with MUD symptoms; and 3) model-based/model-free deficits improved over six weeks in the group with MUD. Participants with MUD and controls with similar age, IQ and socioeconomic status completed the Two-Step Task at treatment commencement (MUD n = 30, Controls n = 31) and six weeks later (MUD n = 23, Controls n = 26). We examined behavioural proxies of model-based/model-free decisions using mixed logistic regression, and their underlying mechanisms using computational modelling. At a behavioural level, participants with MUD were more likely to switch their choices following rewarded actions, although this pattern improved at follow up. At a computational level, groups were similar in their use of model-based mechanisms, but participants with MUD were less likely to apply model-free mechanisms and less likely to repeat rewarded actions. We did not find evidence that individual differences in model-based or model-free parameters were associated with greater severity of methamphetamine dependence, nor did we find that group differences in computational parameters changed between baseline and follow-up assessment. Decision-making challenges in people with MUD are likely related to difficulties in pursuing choices previously associated with positive outcomes.
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Affiliation(s)
- Alex H. Robinson
- Turner Institute for Brain and Mental HealthSchool of Psychological SciencesMonash UniversityMelbourneAustralia
| | - Justin Mahlberg
- Turner Institute for Brain and Mental HealthSchool of Psychological SciencesMonash UniversityMelbourneAustralia
| | - Trevor T.‐J. Chong
- Turner Institute for Brain and Mental HealthSchool of Psychological SciencesMonash UniversityMelbourneAustralia
| | - Antonio Verdejo‐Garcia
- Turner Institute for Brain and Mental HealthSchool of Psychological SciencesMonash UniversityMelbourneAustralia
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Park HRP, Chilver MR, Quidé Y, Montalto A, Schofield PR, Williams LM, Gatt JM. Heritability of cognitive and emotion processing during functional MRI in a twin sample. Hum Brain Mapp 2024; 45:e26557. [PMID: 38224545 PMCID: PMC10785190 DOI: 10.1002/hbm.26557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 11/22/2023] [Accepted: 11/25/2023] [Indexed: 01/17/2024] Open
Abstract
Despite compelling evidence that brain structure is heritable, the evidence for the heritability of task-evoked brain function is less robust. Findings from previous studies are inconsistent possibly reflecting small samples and methodological variations. In a large national twin sample, we systematically evaluated heritability of task-evoked brain activity derived from functional magnetic resonance imaging. We used established standardised tasks to engage brain regions involved in cognitive and emotional functions. Heritability was evaluated across a conscious and nonconscious Facial Expressions of Emotion Task (FEET), selective attention Oddball Task, N-back task of working memory maintenance, and a Go-NoGo cognitive control task in a sample of Australian adult twins (N ranged from 136 to 226 participants depending on the task and pairs). Two methods for quantifying associations of heritability and brain activity were utilised; a multivariate independent component analysis (ICA) approach and a univariate brain region-of-interest (ROI) approach. Using ICA, we observed that a significant proportion of task-evoked brain activity was heritable, with estimates ranging from 23% to 26% for activity elicited by nonconscious facial emotion stimuli, 27% to 34% for N-back working memory maintenance and sustained attention, and 32% to 33% for selective attention in the Oddball task. Using the ROI approach, we found that activity of regions specifically implicated in emotion processing and selective attention showed significant heritability for three ROIs, including estimates of 33%-34% for the left and right amygdala in the nonconscious processing of sad faces and 29% in the medial superior prefrontal cortex for the Oddball task. Although both approaches show similar levels of heritability for the Nonconscious Faces and Oddball tasks, ICA results displayed a more extensive network of heritable brain function, including additional regions beyond the ROI analysis. Furthermore, multivariate twin modelling of both ICA networks and ROI activation suggested a mix of common genetic and unique environmental factors that contribute to the associations between networks/regions. Together, the results indicate a complex relationship between genetic factors and environmental interactions that ultimately give rise to neural activation underlying cognition and emotion.
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Affiliation(s)
- Haeme R. P. Park
- Neuroscience Research AustraliaSydneyNew South WalesAustralia
- School of PsychologyUniversity of New South WalesSydneyNew South WalesAustralia
| | - Miranda R. Chilver
- Neuroscience Research AustraliaSydneyNew South WalesAustralia
- School of PsychologyUniversity of New South WalesSydneyNew South WalesAustralia
| | - Yann Quidé
- Neuroscience Research AustraliaSydneyNew South WalesAustralia
- School of PsychologyUniversity of New South WalesSydneyNew South WalesAustralia
| | - Arthur Montalto
- Neuroscience Research AustraliaSydneyNew South WalesAustralia
- School of PsychologyUniversity of New South WalesSydneyNew South WalesAustralia
| | - Peter R. Schofield
- Neuroscience Research AustraliaSydneyNew South WalesAustralia
- School of Biomedical SciencesUniversity of New South WalesSydneyNew South WalesAustralia
| | - Leanne M. Williams
- Psychiatry and Behavioral Sciences, Stanford School of MedicineStanford UniversityCaliforniaUSA
| | - Justine M. Gatt
- Neuroscience Research AustraliaSydneyNew South WalesAustralia
- School of PsychologyUniversity of New South WalesSydneyNew South WalesAustralia
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43
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Levchenko L, Xu S, Baranov O, Bazaka K. How to Survive at Point Nemo? Fischer-Tropsch, Artificial Photosynthesis, and Plasma Catalysis for Sustainable Energy at Isolated Habitats. Glob Chall 2024; 8:2300086. [PMID: 38223892 PMCID: PMC10784207 DOI: 10.1002/gch2.202300086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Revised: 10/19/2023] [Indexed: 01/16/2024]
Abstract
Inhospitable, inaccessible, and extremely remote alike the famed pole of inaccessibility, aka Point Nemo, the isolated locations in deserts, at sea, or in outer space are difficult for humans to settle, let alone to thrive in. Yet, they present a unique set of opportunities for science, economy, and geopolitics that are difficult to ignore. One of the critical challenges for settlers is the stable supply of energy both to sustain a reasonable quality of life, as well as to take advantage of the local opportunities presented by the remote environment, e.g., abundance of a particular resource. The possible solutions to this challenge are heavily constrained by the difficulty and prohibitive cost of transportation to and from such a habitat (e.g., a lunar or Martian base). In this essay, the advantages and possible challenges of integrating Fischer-Tropsch, artificial photosynthesis, and plasma catalysis into a robust, scalable, and efficient self-contained system for energy harvesting, storage, and utilization are explored.
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Affiliation(s)
- lgor Levchenko
- School of Engineering, College of Engineering, Computing and CyberneticsThe Australian National UniversityCanberraACT2600Australia
- Plasma Sources and Application Centre, NIENanyang Technological UniversitySingapore637616Singapore
| | - Shuyan Xu
- Plasma Sources and Application Centre, NIENanyang Technological UniversitySingapore637616Singapore
| | - Oleg Baranov
- Department of Theoretical MechanicsEngineering and Robomechanical SystemsNational Aerospace UniversityKharkiv61070Ukraine
- Department of Gaseous ElectronicsJozef Stefan InstituteLjubljana1000Slovenia
| | - Kateryna Bazaka
- School of Engineering, College of Engineering, Computing and CyberneticsThe Australian National UniversityCanberraACT2600Australia
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Paschalis A, De Kauwe MG, Sabot M, Fatichi S. When do plant hydraulics matter in terrestrial biosphere modelling? Glob Chang Biol 2024; 30:e17022. [PMID: 37962234 PMCID: PMC10952296 DOI: 10.1111/gcb.17022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Accepted: 10/23/2023] [Indexed: 11/15/2023]
Abstract
The ascent of water from the soil to the leaves of vascular plants, described by the study of plant hydraulics, regulates ecosystem responses to environmental forcing and recovery from stress periods. Several approaches to model plant hydraulics have been proposed. In this study, we introduce four different versions of plant hydraulics representations in the terrestrial biosphere model T&C to understand the significance of plant hydraulics to ecosystem functioning. We tested representations of plant hydraulics, investigating plant water capacitance, and long-term xylem damages following drought. The four models we tested were a combination of representations including or neglecting capacitance and including or neglecting xylem damage legacies. Using the models at six case studies spanning semiarid to tropical ecosystems, we quantify how plant xylem flow, plant water storage and long-term xylem damage can modulate overall water and carbon dynamics across multiple time scales. We show that as drought develops, models with plant hydraulics predict a slower onset of plant water stress, and a diurnal variability of water and carbon fluxes closer to observations. Plant water storage was found to be particularly important for the diurnal dynamics of water and carbon fluxes, with models that include plant water capacitance yielding better results. Models including permanent damage to conducting plant tissues show an additional significant drought legacy effect, limiting plant productivity during the recovery phase following major droughts. However, when considering ecosystem responses to the observed climate variability, plant hydraulic modules alone cannot significantly improve the overall model performance, even though they reproduce more realistic water and carbon dynamics. This opens new avenues for model development, explicitly linking plant hydraulics with additional ecosystem processes, such as plant phenology and improved carbon allocation algorithms.
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Affiliation(s)
- Athanasios Paschalis
- Department of Civil and Environmental EngineeringImperial College LondonLondonUK
| | | | - Manon Sabot
- ARC Centre of Excellence for Climate Extremes and Climate Change Research CentreUniversity of New South WalesSydneyNew South WalesAustralia
| | - Simone Fatichi
- Department of Civil and Environmental EngineeringNational University of SingaporeSingaporeSingapore
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45
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Ferreira MFS, Brambilla G, Thévenaz L, Feng X, Zhang L, Sumetsky M, Jones C, Pedireddy S, Vollmer F, Dragic PD, Henderson-Sapir O, Ottaway DJ, Strupiechonski E, Hernandez-Cardoso GG, Hernandez-Serrano AI, González FJ, Castro Camus E, Méndez A, Saccomandi P, Quan Q, Xie Z, Reinhard BM, Diem M. Roadmap on optical sensors. J Opt 2024; 26:013001. [PMID: 38116399 PMCID: PMC10726224 DOI: 10.1088/2040-8986/ad0e85] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Revised: 06/09/2023] [Accepted: 11/21/2023] [Indexed: 12/21/2023]
Abstract
Optical sensors and sensing technologies are playing a more and more important role in our modern world. From micro-probes to large devices used in such diverse areas like medical diagnosis, defence, monitoring of industrial and environmental conditions, optics can be used in a variety of ways to achieve compact, low cost, stand-off sensing with extreme sensitivity and selectivity. Actually, the challenges to the design and functioning of an optical sensor for a particular application requires intimate knowledge of the optical, material, and environmental properties that can affect its performance. This roadmap on optical sensors addresses different technologies and application areas. It is constituted by twelve contributions authored by world-leading experts, providing insight into the current state-of-the-art and the challenges their respective fields face. Two articles address the area of optical fibre sensors, encompassing both conventional and specialty optical fibres. Several other articles are dedicated to laser-based sensors, micro- and nano-engineered sensors, whispering-gallery mode and plasmonic sensors. The use of optical sensors in chemical, biological and biomedical areas is discussed in some other papers. Different approaches required to satisfy applications at visible, infrared and THz spectral regions are also discussed.
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Affiliation(s)
| | | | | | - Xian Feng
- Jiangsu Normal University, People’s Republic of China
| | - Lei Zhang
- Zhejiang University, People’s Republic of China
| | - Misha Sumetsky
- Aston Institute of Photonic Technologies, Aston University, Birmingham, United Kingdom
| | - Callum Jones
- Department of Physics and Astronomy, Living Systems Institute, University of Exeter, United Kingdom
| | - Srikanth Pedireddy
- Department of Physics and Astronomy, Living Systems Institute, University of Exeter, United Kingdom
| | - Frank Vollmer
- Department of Physics and Astronomy, Living Systems Institute, University of Exeter, United Kingdom
| | - Peter D Dragic
- University of Illinois at Urbana-Champaign, United States of America
| | - Ori Henderson-Sapir
- Department of Physics and Institute of Photonics and Advanced Sensing, The University of Adelaide, SA, Australia
- OzGrav, University of Adelaide, Adelaide, SA, Australia
- Mirage Photonics, Oaklands Park, SA, Australia
| | - David J Ottaway
- Department of Physics and Institute of Photonics and Advanced Sensing, The University of Adelaide, SA, Australia
- OzGrav, University of Adelaide, Adelaide, SA, Australia
| | | | | | | | | | | | | | - Paola Saccomandi
- Department of Mechanical Engineering, Politecnico di Milano, Italy
| | - Qimin Quan
- NanoMosaic Inc., United States of America
| | - Zhongcong Xie
- Massachusetts General Hospital and Harvard Medical School, United States of America
| | - Björn M Reinhard
- Department of Chemistry and The Photonics Center, Boston University, United States of America
| | - Max Diem
- Northeastern University and CIRECA LLC, United States of America
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46
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Putra AR, Hodgins KA, Fournier‐Level A. Assessing the invasive potential of different source populations of ragweed ( Ambrosia artemisiifolia L.) through genomically informed species distribution modelling. Evol Appl 2024; 17:e13632. [PMID: 38283606 PMCID: PMC10810254 DOI: 10.1111/eva.13632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 12/05/2023] [Accepted: 12/06/2023] [Indexed: 01/30/2024] Open
Abstract
The genetic composition of founding populations is likely to play a key role in determining invasion success. Individual genotypes may differ in habitat preference and environmental tolerance, so their ability to colonize novel environments can be highly variable. Despite the importance of genetic variation on invasion success, its influence on the potential distribution of invaders is rarely investigated. Here, we integrate population genomics and ecological niche models (ENMs) into a single framework to predict the distribution of globally invasive common ragweed (Ambrosia artemisiifolia) in Australia. We identified three genetic clusters for ragweed and used these to construct cluster-specific ENMs and characterize within-species niche differentiation. The potential range of ragweed in Australia depended on the genetic composition and continent of origin of the introduced population. Invaders originating from warmer, wetter climates had a broader potential distribution than those from cooler, drier ones. By quantifying this change, we identified source populations most likely to expand the ragweed distribution. As prevention remains the most effective method of invasive species management, our work provides a valuable way of ranking the threat posed by different populations to better inform management decisions.
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Affiliation(s)
- Andhika R. Putra
- School of BioSciencesThe University of MelbourneParkvilleVictoriaAustralia
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47
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Henry A, Fried L, Nathan A, Dhamrait G, Boruff B, Schipperijn J, Cross D, Beck B, Trapp G, Christian H. The built environment and child obesity: A review of Australian policies. Obes Rev 2024; 25:e13650. [PMID: 37804083 PMCID: PMC10909561 DOI: 10.1111/obr.13650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Revised: 06/16/2023] [Accepted: 09/09/2023] [Indexed: 10/08/2023]
Abstract
Child obesity is a serious public health challenge affected by both individual choice and societal and environmental factors. The main modifiable risk factors for child obesity are unhealthy eating and low levels of physical activity, both influenced by aspects of the built environment. Coordinated government policy across jurisdictions, developed using strong research evidence, can enable built environments that better support healthy lifestyles. This study reviewed current Australian and Western Australian government policies to understand if and how they address the impact of the built environment on child obesity, physical activity, sedentary behavior, and diet. Current government policy documents related to the built environment and child health were analyzed using the Comprehensive Analysis of Policy on Physical Activity framework. Ten Australian and 31 Western Australian government policy documents were identified. Most referred to the role of the built environment in supporting physical activity. Very few policies mentioned the built environment's role in reducing sedentary behaviors, supporting healthy eating, and addressing obesity. Few recognized the needs of children, and none mentioned children in policy development. Future government policy development should include the voices of children and child-specific built environment features. Inter-organizational policies with transparent implementation and evaluation plans are recommended.
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Affiliation(s)
- Anna Henry
- Telethon Kids InstituteThe University of Western AustraliaPerthWestern AustraliaAustralia
| | - Leanne Fried
- Telethon Kids InstituteThe University of Western AustraliaPerthWestern AustraliaAustralia
| | - Andrea Nathan
- Telethon Kids InstituteThe University of Western AustraliaPerthWestern AustraliaAustralia
| | - Gursimran Dhamrait
- Telethon Kids InstituteThe University of Western AustraliaPerthWestern AustraliaAustralia
- School of Population and Global HealthThe University of Western AustraliaPerthWestern AustraliaAustralia
| | - Bryan Boruff
- School of Agriculture and EnvironmentThe University of Western AustraliaPerthWestern AustraliaAustralia
| | - Jasper Schipperijn
- Department of Sports Science and Clinical BiomechanicsUniversity of Southern DenmarkOdenseDenmark
| | - Donna Cross
- Telethon Kids InstituteThe University of Western AustraliaPerthWestern AustraliaAustralia
- School of Population and Global HealthThe University of Western AustraliaPerthWestern AustraliaAustralia
| | - Ben Beck
- School of Public Health and Preventive MedicineMonash UniversityMelbourneVictoriaAustralia
| | - Gina Trapp
- Telethon Kids InstituteThe University of Western AustraliaPerthWestern AustraliaAustralia
- School of Population and Global HealthThe University of Western AustraliaPerthWestern AustraliaAustralia
| | - Hayley Christian
- Telethon Kids InstituteThe University of Western AustraliaPerthWestern AustraliaAustralia
- School of Population and Global HealthThe University of Western AustraliaPerthWestern AustraliaAustralia
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48
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Walden SL, Carroll JA, Unterreiner A, Barner‐Kowollik C. Photochemical Action Plots Reveal the Fundamental Mismatch Between Absorptivity and Photochemical Reactivity. Adv Sci (Weinh) 2024; 11:e2306014. [PMID: 37937391 PMCID: PMC10797470 DOI: 10.1002/advs.202306014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Indexed: 11/09/2023]
Abstract
Over the last years, the authors' laboratory has employed monochromatic tuneable laser systems to reveal a fundamental mismatch between the absorptivity of a chromophore and its photochemical reactivity for the vast majority of covalent bond forming reactions as well as specific bond cleavage reactions. In the general chemistry community, however, the long-held assumption pervades that effective photochemical reactions are obtained in situations where there is strong overlap between the absorption spectrum and the excitation wavelength. The current Perspective illustrates that the absorption spectrum of a molecule only provides information about electronic excitations and remains entirely silent on other energy redistribution mechanisms that follow, which critically influence photochemical reactivity. Future avenues of enquiry on how action plots can be understood are proposed and the importance of action plots for tailoring photochemical applications with never-before-seen precision is explored.
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Affiliation(s)
- Sarah L. Walden
- School of Chemistry and Physics, Centre for Materials ScienceQueensland University of Technology (QUT)2 George StreetBrisbaneQLD4000Australia
- Institute of Solid State Physics and Institute of Applied PhysicsAbbe Centre of PhotonicsFriedrich Schiller University JenaHelmholtzweg 307743JenaGermany
| | - Joshua A. Carroll
- School of Chemistry and Physics, Centre for Materials ScienceQueensland University of Technology (QUT)2 George StreetBrisbaneQLD4000Australia
| | - Andreas‐Neil Unterreiner
- Institute of Physical ChemistryKarlsruhe Institute of Technology (KIT)Fritz‐Haber‐Weg 276131KarlsruheGermany
| | - Christopher Barner‐Kowollik
- School of Chemistry and Physics, Centre for Materials ScienceQueensland University of Technology (QUT)2 George StreetBrisbaneQLD4000Australia
- Institute of Nanotechnology (INT)Karlsruhe Institute of Technology (KIT)Hermann‐von‐Helmholtz‐Platz 176344Eggenstein‐LeopoldshafenGermany
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49
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Kenefick C, Livesley S, Farrell C. A systematic review of resprouting in woody plants and potential implications for the management of urban plantings. Ecol Evol 2024; 14:e10839. [PMID: 38235408 PMCID: PMC10794092 DOI: 10.1002/ece3.10839] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Revised: 09/25/2023] [Accepted: 12/22/2023] [Indexed: 01/19/2024] Open
Abstract
Naturalistic plantings, such as meadow-style plantings, can improve the quality of urban green spaces through aesthetic, biodiversity and low maintenance features. Species selection for, and maintenance of naturalistic plantings are key to their success. While herbaceous and grassy meadows can be mowed, naturalistic plantings with woody plants require more intense maintenance to remove biomass and promote resprouting. We aim to understand woody plant responses to diverse disturbance regimes to potentially inform the selection and management of woody species in urban plantings. We conducted a quantitative systematic literature review of 72 papers and investigated what main external (climate, disturbance regime) and internal (buds, life stage, storage reserves) factors influence the resprouting response of woody plants. We found resprouting literature is geographically widespread for woody plants, but studies are skewed towards Temperate climates in USA and Australia, with a focus on high severity and high frequency fire disturbance. Resprouting response was mostly defined as a continuous response to disturbance dependent on disturbance regime, climate and plant traits. Maintenance and management of naturalistic woody plantings, through hard pruning techniques such as coppicing, may be informed by analogous high severity and high frequency disturbance studies. However, the literature on woody plant resprouting has several knowledge gaps for lower severity and lower frequency disturbance regimes and in more arid climates. Future research should evaluate the response of naturalistic woody plantings to disturbance in specific urban contexts.
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Affiliation(s)
- Claire Kenefick
- Green Infrastructure Research Group, School of Agriculture, Food and Ecosystem SciencesThe University of MelbourneMelbourneVictoriaAustralia
| | - Stephen Livesley
- Green Infrastructure Research Group, School of Agriculture, Food and Ecosystem SciencesThe University of MelbourneMelbourneVictoriaAustralia
| | - Claire Farrell
- Green Infrastructure Research Group, School of Agriculture, Food and Ecosystem SciencesThe University of MelbourneMelbourneVictoriaAustralia
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50
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Hill AT, Bailey NW, Zomorrodi R, Hadas I, Kirkovski M, Das S, Lum JAG, Enticott PG. EEG microstates in early-to-middle childhood show associations with age, biological sex, and alpha power. Hum Brain Mapp 2023; 44:6484-6498. [PMID: 37873867 PMCID: PMC10681660 DOI: 10.1002/hbm.26525] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 10/04/2023] [Accepted: 10/06/2023] [Indexed: 10/25/2023] Open
Abstract
Electroencephalographic (EEG) microstates can provide a unique window into the temporal dynamics of large-scale brain networks across brief (millisecond) timescales. Here, we analysed fundamental temporal features of microstates extracted from the broadband EEG signal in a large (N = 139) cohort of children spanning early-to-middle childhood (4-12 years of age). Linear regression models were used to examine if participants' age and biological sex could predict the temporal parameters GEV, duration, coverage, and occurrence, for five microstate classes (A-E) across both eyes-closed and eyes-open resting-state recordings. We further explored associations between these microstate parameters and posterior alpha power after removal of the 1/f-like aperiodic signal. The microstates obtained from our neurodevelopmental EEG recordings broadly replicated the four canonical microstate classes (A to D) frequently reported in adults, with the addition of the more recently established microstate class E. Biological sex served as a significant predictor in the regression models for four of the five microstate classes (A, C, D, and E). In addition, duration and occurrence for microstate E were both found to be positively associated with age for the eyes-open recordings, while the temporal parameters of microstates C and E both exhibited associations with alpha band spectral power. Together, these findings highlight the influence of age and sex on large-scale functional brain networks during early-to-middle childhood, extending understanding of neural dynamics across this important period for brain development.
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Affiliation(s)
- Aron T. Hill
- Cognitive Neuroscience Unit, School of PsychologyDeakin UniversityGeelongAustralia
- Department of Psychiatry, Central Clinical SchoolMonash UniversityMelbourneAustralia
| | - Neil W. Bailey
- Monarch Research InstituteMonarch Mental Health GroupSydneyAustralia
- School of Medicine and PsychologyThe Australian National UniversityCanberraAustralia
| | - Reza Zomorrodi
- Temerty Centre for Therapeutic Brain Intervention, Centre for Addiction and Mental HealthUniversity of TorontoTorontoCanada
| | - Itay Hadas
- Department of Psychiatry, School of MedicineUniversity of California San DiegoLa JollaCaliforniaUSA
| | - Melissa Kirkovski
- Cognitive Neuroscience Unit, School of PsychologyDeakin UniversityGeelongAustralia
- Institute for Health and SportVictoria UniversityMelbourneAustralia
| | - Sushmit Das
- Azrieli Adult Neurodevelopmental CentreCentre for Addiction and Mental HealthTorontoCanada
| | - Jarrad A. G. Lum
- Cognitive Neuroscience Unit, School of PsychologyDeakin UniversityGeelongAustralia
| | - Peter G. Enticott
- Cognitive Neuroscience Unit, School of PsychologyDeakin UniversityGeelongAustralia
- Department of Psychiatry, Central Clinical SchoolMonash UniversityMelbourneAustralia
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