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Zhou X, Ouyang S, Saurer M, Feng M, Bose AK, Duan H, Tie L, Shen W, Gessler A. Species-specific responses of C and N allocation to N addition: evidence from dual 13C and 15N labeling in three tree species. Sci Total Environ 2024; 927:172164. [PMID: 38580112 DOI: 10.1016/j.scitotenv.2024.172164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 03/29/2024] [Accepted: 03/31/2024] [Indexed: 04/07/2024]
Abstract
Soil nitrogen (N) availability affects plant carbon (C) utilization. However, it is unclear how various tree functional types respond to N addition in terms of C assimilation, allocation, and storage. Here, a microcosm experiment with dual 13C and 15N labeling was conducted to study the effects of N addition (i.e., control, 0 g N kg-1; moderate N addition, 1.68 g N kg-1; and high N addition, 3.36 g N kg-1 soil) on morphological traits, on changes in nonstructural carbohydrates (NSC) in different organs, as well as on C and N uptake and allocation in three European temperate forest tree species (i.e., Acer pseudoplatanus, Picea abies and Abies alba). Our results demonstrated that root N uptake rates of the three tree species increased by N addition. In A. pseudoplatanus, N uptake by roots, N allocation to aboveground organs, and aboveground biomass allocation significantly improved by moderate and high N addition. In A. alba, only the high N addition treatment considerably raised aboveground N and C allocation. In contrast, biomass as well as C and N allocation between above and belowground tissues were not altered by N addition in P. abies. Meanwhile, NSC content as well as C and N coupling (represented by the ratio of relative 13C and 15N allocation rates in organs) were affected by N addition in A. pseudoplantanus and P. abies but not in A. alba. Overall, A. pseudoplatanus displayed the highest sensitivity to N addition and the highest N requirement among the three species, while P. abies had a lower N demand than A. alba. Our findings highlight that the responses of C and N allocation to soil N availability are species-specific and vary with the amount of N addition.
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Affiliation(s)
- Xiaoqian Zhou
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang 550025, China
| | - Shengnan Ouyang
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang 550025, China; Swiss Federal Institute for Forest, Snow and Landscape Research, Birmensdorf 8903, Switzerland.
| | - Matthias Saurer
- Swiss Federal Institute for Forest, Snow and Landscape Research, Birmensdorf 8903, Switzerland
| | - Mei Feng
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang 550025, China
| | - Arun K Bose
- Swiss Federal Institute for Forest, Snow and Landscape Research, Birmensdorf 8903, Switzerland; Forestry and Wood Technology Discipline, Khulna University, Khulna 9208, Bangladesh
| | - Honglang Duan
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang 550025, China
| | - Liehua Tie
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang 550025, China
| | - Weijun Shen
- Guangxi Key Laboratory of Forest Ecology and Conservation, State Key Laboratory for Conservation and Utilization of Agro-bioresources, College of Forestry, Guangxi University, Nanning, Guangxi 530004, China
| | - Arthur Gessler
- Swiss Federal Institute for Forest, Snow and Landscape Research, Birmensdorf 8903, Switzerland; Institute of Terrestrial Ecosystems, ETH Zurich, Zurich 8902, Switzerland
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Abstract
Macropods belong to the marsupial family Macropodidae, which includes animals such as kangaroos and wallabies. Macropod offspring are highly altricial at birth and require specialized care and environmental conditions for healthy development. The care and management of pediatric macropods poses a challenge due to the unique physiology and reproductive strategy of macropods. In order to successfully work with pediatric macropods, clinical veterinarians should have knowledge of species-specific husbandry, normal postnatal development, and common medical conditions/treatments. With limited information available on macropod pediatric medicine, further research is warranted to improve the care and management of these animals in human care.
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Affiliation(s)
- Jon Romano
- Department of Veterinary Clinical Sciences, Exotics and Lab Animal Medicine, Long Island University College of Veterinary Medicine, 720 Northern Boulevard, Brookville, NY 11548, USA.
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3
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Mouginot M, Wilson ML, Desai N, Surbeck M. Differences in expression of male aggression between wild bonobos and chimpanzees. Curr Biol 2024; 34:1780-1785.e4. [PMID: 38614078 DOI: 10.1016/j.cub.2024.02.071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 01/22/2024] [Accepted: 02/28/2024] [Indexed: 04/15/2024]
Abstract
Researchers investigating the evolution of human aggression look to our closest living relatives, bonobos (Pan paniscus) and chimpanzees (Pan troglodytes), as valuable sources of comparative data.1,2 Males in the two species exhibit contrasting patterns: male chimpanzees sexually coerce females3,4,5,6,7,8 and sometimes kill conspecifics,9,10,11,12 whereas male bonobos exhibit less sexual coercion13,14 and no reported killing.13 Among the various attempts to explain these species differences, the self-domestication hypothesis proposes negative fitness consequences of male aggression in bonobos.2,15,16 Nonetheless, the extent to which these species differ in overall rates of aggression remains unclear due to insufficiently comparable observation methods.17,18,19,20,21,22,23 We used 14 community-years of focal follow data-the gold standard for observational studies24-to compare rates of male aggression in 3 bonobo communities at the Kokolopori Bonobo Reserve, Democratic Republic of Congo, and 2 chimpanzee communities at Gombe National Park, Tanzania. As expected, given that females commonly outrank males, we found that bonobos exhibited lower rates of male-female aggression and higher rates of female-male aggression than chimpanzees. Surprisingly, we found higher rates of male-male aggression among bonobos than chimpanzees even when limiting analyses to contact aggression. In both species, more aggressive males obtained higher mating success. Although our findings indicate that the frequency of male-male aggression does not parallel species difference in its intensity, they support the view that contrary to male chimpanzees, whose reproductive success depends on strong coalitions, male bonobos have more individualistic reproductive strategies.25.
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Affiliation(s)
- Maud Mouginot
- Institute for Advanced Study in Toulouse (IAST), Toulouse School of Economics, Université Toulouse Capitole, 31000 Toulouse, France; Department of Anthropology, University of Minnesota, Minneapolis, MN 55455, USA.
| | - Michael L Wilson
- Department of Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, MN 55108, USA; Institute on the Environment, University of Minnesota, Saint Paul, MN 55108, USA
| | - Nisarg Desai
- Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA
| | - Martin Surbeck
- Department of Human Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
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Matsubayashi M, Tsuchida S, Shibahara T, Ushida K, Fuglei E, Pedersen ÅØ, Nielsen ÓK, Duszynski DW, Skírnisson K. Comparative molecular analyses of Eimeria Schneider (Apicomplexa: Eimeriidae) species from rock ptarmigan in Iceland, Svalbard-Norway, and Japan. Syst Parasitol 2024; 101:31. [PMID: 38642205 DOI: 10.1007/s11230-024-10159-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2023] [Accepted: 03/07/2024] [Indexed: 04/22/2024]
Abstract
The rock ptarmigan (Lagopus muta) has a Holarctic breeding distribution and is found in arctic and sub-arctic regions. Isolated populations and glacial relicts occur in alpine areas south of the main range, like the Pyrenees in Europe, the Pamir mountains in Central Asia, and the Japanese Alps. In recent decades considerable effort has been made to clarify parasite infections in the rock ptarmigan. Seven Eimeria spp. have been reported parasitizing rock ptarmigan. Two of those species, E. uekii and E. raichoi parasitizing rock ptarmigan (L. m. japonica) in Japan, have been identified genetically. Here we compare partial sequences of nuclear (18S rRNA) and mitochondrial (COI) genes and we detail the morphology of sporulated oocysts of E. uekii and E. raichoi from Japan, E. muta and E. rjupa, from the rock ptarmigan (L. m. islandorum) in Iceland, and two undescribed eimerian morphotypes, Eimeria sp. A, and Eimeria sp. B, from rock ptarmigan (L. m. hyperborea) in Norway (Svalbard in the Norwegian Archipelago). Two morphotypes, ellipsoidal and spheroidal, are recognized for each of the three host subspecies. Our phylogenetic analysis suggests that the ellipsoidal oocyst types, E. uekii, E. muta, and Eimeria sp. A (Svalbard-Norway) are identical and infects rock ptarmigan in Japan, Iceland, and Svalbard-Norway, respectively. Eimeria uekii was first described in Japan in 1981 so that E. muta, described in Iceland in 2007, and Eimeria sp. A in Svalbard-Norway are junior synonyms of E. uekii. Also, phylogenetic analysis shows that the spheroidal oocyst types, E. rjupa and Eimeria sp. B (Svalbard-Norway), are identical, indicating that rock ptarmigan in Iceland and Svalbard-Norway are infected by the same Eimeria species and differ from E. raichoi in Japan.
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Affiliation(s)
- Makoto Matsubayashi
- Graduate School of Veterinary Sciences, Osaka Metropolitan University, 1-58 Rinku oraikita, Izumisano, Osaka, 598-8531, Japan.
- Department of Veterinary Parasitology, Faculty of Veterinary Medicine, Airlangga University, Surabaya, 60115, Indonesia.
| | - Sayaka Tsuchida
- College of Bioscience and Biotechnology, Chubu University, 1200 Matsumoto-cho, Kasugai, Aichi, 487-8501, Japan
| | - Tomoyuki Shibahara
- Graduate School of Veterinary Sciences, Osaka Metropolitan University, 1-58 Rinku oraikita, Izumisano, Osaka, 598-8531, Japan
- Kagoshima Research Station, National Institute of Animal Health, National Agriculture and Food Research Organization, 2702 Chuzan, Kagoshima, Kagoshima, 891-0105, Japan
| | - Kazunari Ushida
- College of Bioscience and Biotechnology, Chubu University, 1200 Matsumoto-cho, Kasugai, Aichi, 487-8501, Japan
| | - Eva Fuglei
- Fram Centre, Norwegian Polar Institute, Hjalmar Johansens gate 14, 9296, Tromsø, Norway
| | - Åshild Ø Pedersen
- Fram Centre, Norwegian Polar Institute, Hjalmar Johansens gate 14, 9296, Tromsø, Norway
| | - Ólafur K Nielsen
- Icelandic Institute of Natural History, Urriðaholtsstræti 6-8, 210, Garðabær, Iceland
| | - Donald W Duszynski
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Karl Skírnisson
- Laboratory of Parasitology, Institute for Experimental Pathology, Keldur, University of Iceland, Keldnavegur 3, 112, Reykjavík, Iceland
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Bedin LC, Alves PV, da Silva RJ. Evolutionary affinities and morphological characterization of the enigmatic Zonocotyle bicaecata (Trematoda: Paramphistomoidea: Zonocotylidae) from the Upper Paraná River basin. Syst Parasitol 2024; 101:30. [PMID: 38635136 DOI: 10.1007/s11230-024-10158-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2024] [Accepted: 03/04/2024] [Indexed: 04/19/2024]
Abstract
Neotropical fish amphistomes represent a highly diverse group within the Paramphistomoidea, with wide distribution across major South American hydrological drainages. However, the limited molecular characterization of these taxa has impeded a comprehensive assessment of their evolutionary relationships and the systematic relevance of morphological features in classification schemes. Our study, based on the critical evaluation of the type material of both nominal species of Zonocotyle (type genus of the monotypic Zonocotylidae), and newly collected specimens of Zonocotyle bicaecata from Steindachnerina insculpta (Curimatidae) in the Upper Paraná River basin, Brazil, presents a morphological reappraisal of Z. bicaecata and provides molecular data (28S rDNA, ITS1-5.8S-ITS2 region, and COI mtDNA) to assess its phylogenetic relationships. Our phylogenetic analyses confirm this species belongs to the Paramphistomoidea. The most comprehensive analyses (based on 28S and COI) further indicate a close relationship with other fish amphistomes from the Neotropical region. Additionally, we emphasized the necessity for a new classification within Paramphistomoidea and briefly discussed the host range of Zonocotyle among curimatid fish hosts.
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Affiliation(s)
- Letícia C Bedin
- Instituto de Biociências, Setor de Parasitologia, Universidade Estadual Paulista "Júlio de Mesquita Filho" (UNESP), Rua Prof. Dr. Antônio Celso Wagner Zanin, s/n, Botucatu, São Paulo, 18616-689, Brazil
| | - Philippe V Alves
- Instituto de Biociências, Setor de Parasitologia, Universidade Estadual Paulista "Júlio de Mesquita Filho" (UNESP), Rua Prof. Dr. Antônio Celso Wagner Zanin, s/n, Botucatu, São Paulo, 18616-689, Brazil.
| | - Reinaldo J da Silva
- Instituto de Biociências, Setor de Parasitologia, Universidade Estadual Paulista "Júlio de Mesquita Filho" (UNESP), Rua Prof. Dr. Antônio Celso Wagner Zanin, s/n, Botucatu, São Paulo, 18616-689, Brazil
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6
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Adams SA, Gurajapu A, Qiang A, Gerbaulet M, Schulz S, Tsutsui ND, Ramirez SR, Gillespie RG. Chemical species recognition in an adaptive radiation of Hawaiian Tetragnatha spiders (Araneae: Tetragnathidae). Proc Biol Sci 2024; 291:20232340. [PMID: 38593845 PMCID: PMC11003775 DOI: 10.1098/rspb.2023.2340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Accepted: 03/05/2024] [Indexed: 04/11/2024] Open
Abstract
Studies of adaptive radiations have played a central role in our understanding of reproductive isolation. Yet the focus has been on human-biased visual and auditory signals, leaving gaps in our knowledge of other modalities. To date, studies on chemical signals in adaptive radiations have focused on systems with multimodal signalling, making it difficult to isolate the role chemicals play in reproductive isolation. In this study we examine the use of chemical signals in the species recognition and adaptive radiation of Hawaiian Tetragnatha spiders by focusing on entire communities of co-occurring species, and conducting behavioural assays in conjunction with chemical analysis of their silks using gas chromatography-mass spectrometry. Male spiders significantly preferred the silk extracts of conspecific mates over those of sympatric heterospecifics. The compounds found in the silk extracts, long chain alkyl methyl ethers, were remarkably species-specific in the combination and quantity. The differences in the profile were greatest between co-occurring species and between closely related sibling species. Lastly, there were significant differences in the chemical profile between two populations of a particular species. These findings provide key insights into the role chemical signals play in the attainment and maintenance of reproductive barriers between closely related co-occurring species.
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Affiliation(s)
- Seira A. Adams
- Department of Environmental Science, Policy, and Management, University of California, 130 Mulford Hall, #3114, Berkeley, CA 94720, USA
- Center for Population Biology, University of California, 2320 Storer Hall, Davis, CA 95616, USA
- Department of Evolution and Ecology, University of California, 2320 Storer Hall, Davis, CA 95616, USA
| | - Anjali Gurajapu
- Department of Environmental Science, Policy, and Management, University of California, 130 Mulford Hall, #3114, Berkeley, CA 94720, USA
| | - Albert Qiang
- Department of Environmental Science, Policy, and Management, University of California, 130 Mulford Hall, #3114, Berkeley, CA 94720, USA
| | - Moritz Gerbaulet
- Institute of Organic Chemistry, Technische Universität Braunschweig, Hagenring 30, Braunschweig 38106, Germany
| | - Stefan Schulz
- Institute of Organic Chemistry, Technische Universität Braunschweig, Hagenring 30, Braunschweig 38106, Germany
| | - Neil D. Tsutsui
- Department of Environmental Science, Policy, and Management, University of California, 130 Mulford Hall, #3114, Berkeley, CA 94720, USA
| | - Santiago R. Ramirez
- Center for Population Biology, University of California, 2320 Storer Hall, Davis, CA 95616, USA
- Department of Evolution and Ecology, University of California, 2320 Storer Hall, Davis, CA 95616, USA
| | - Rosemary G. Gillespie
- Department of Environmental Science, Policy, and Management, University of California, 130 Mulford Hall, #3114, Berkeley, CA 94720, USA
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Peyhardi J, Laroche F, Mortier F. Pólya-splitting distributions as stationary solutions of multivariate birth-death processes under extended neutral theory. J Theor Biol 2024; 582:111755. [PMID: 38354766 DOI: 10.1016/j.jtbi.2024.111755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 11/17/2023] [Accepted: 01/28/2024] [Indexed: 02/16/2024]
Abstract
Multivariate count distributions are crucial for the inference of ecological processes underpinning biodiversity. In particular, neutral theory provides useful null distributions allowing the evaluation of adaptation or natural selection. In this paper, we build a broader family of multivariate distributions: the Polya-splitting distributions. We show that they emerge naturally as stationary distributions of a multivariate birth-death process. This family of distributions is a consistent extension of non-zero sum neutral models based on a master equation approach. It allows considering both total abundance of the community and relative abundances of species. We emphasize that this family is large enough to encompass various dependence structures among species. We also introduce the strong closure under addition property that can be useful to generate nested multi-level dependence structures. Although all Pólya splitting distributions do not share this property, we provide numerous example verifying it. They include the previously known example with independent species, and also new ones with alternative dependence structures. Overall, we advocate that Polya-splitting distribution should become a part of the classic toolbox for the analysis of multivariate count data in ecology, providing alternative approaches to joint species distribution framework. Comparatively, our approach allows to model dependencies between species at the observation level, while the classical JSDM's model dependencies at the latent process strata.
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Affiliation(s)
- Jean Peyhardi
- IMAG, University of Montpellier, CNRS, Montpellier, France.
| | - Fabien Laroche
- MR DYNAFOR, INP de Toulouse, INRAE, Auzeville Tolosane, France
| | - Frédéric Mortier
- CIRAD, UPR Forêts et Sociétés, F-34398 Montpellier, France; Environmental Justice Program, Georgetown University, Washington D.C., United States of America
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Soriano-Vargas E, García-Albarrán MA, Salgado-Miranda C. Eimeria atricillae n. sp. (Apicomplexa: Eimeriidae) from the laughing gull Leucophaeus atricilla (Linnaeus) (Aves: Charadriiformes: Laridae) in Port Isabel, Texas. Syst Parasitol 2024; 101:29. [PMID: 38568282 DOI: 10.1007/s11230-024-10153-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Accepted: 02/05/2024] [Indexed: 04/05/2024]
Abstract
A new coccidian species, Eimeria atricillae n. sp. (Apicomplexa: Eimeriidae) collected from the laughing gull Leucophaeus atricilla, is reported from Port Isabel, Texas, USA. Sporulated oöcysts of the new species are spherical to subspherical, 16.0-18.1 × 14.4-16.6 (17.1 × 15.4) μm, with a length/width (L/W) ratio of 1.0-1.1; polar granules are present, but micropyle and oöcyst residuum are absent. Sporocysts are ovoid, 9.1-9.7 × 6.1-7.1 (9.4 × 6.6) μm, with a L/W ratio of 1.3-1.5; Stieda body present, but sub-Stieda and para-Stieda bodies are absent; sporocyst residuum diffuse.
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Affiliation(s)
- Edgardo Soriano-Vargas
- Centro de Investigación y Estudios Avanzados en Salud Animal, Facultad de Medicina Veterinaria y Zootecnia, Universidad Autónoma del Estado de México, Carretera Toluca-Atlacomulco km 15.5, 50295, Toluca, Estado de México, México
| | - Marco Antonio García-Albarrán
- Institute for Biodiversity Research, Development and Sustainability (iBIRDS, A. C.), San Agustín Berros s/n, 50960, Villa Victoria, State of Mexico, Mexico
| | - Celene Salgado-Miranda
- Centro de Investigación y Estudios Avanzados en Salud Animal, Facultad de Medicina Veterinaria y Zootecnia, Universidad Autónoma del Estado de México, Carretera Toluca-Atlacomulco km 15.5, 50295, Toluca, Estado de México, México.
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9
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Walde MG, Wenden B, Chuine I, Gessler A, Saurer M, Vitasse Y. Stable water isotopes reveal the onset of bud dormancy in temperate trees, whereas water content is a better proxy for dormancy release. Tree Physiol 2024; 44:tpae028. [PMID: 38417929 PMCID: PMC11016847 DOI: 10.1093/treephys/tpae028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Accepted: 02/20/2024] [Indexed: 03/01/2024]
Abstract
Earlier spring growth onset in temperate forests is a visible effect of global warming that alters global water and carbon cycling. Consequently, it becomes crucial to accurately predict the future spring phenological shifts in vegetation under different climate warming scenarios. However, current phenological models suffer from a lack of physiological insights of tree dormancy and are rarely experimentally validated. Here, we sampled twig cuttings of five deciduous tree species at two climatically different locations (270 and 750 m a.s.l., ~ 2.3 °C difference) throughout the winter of 2019-20. Twig budburst success, thermal time to budburst, bud water content and short-term 2H-labelled water uptake into buds were quantified to link bud dormancy status with vascular water transport efficacy, with the objective of establishing connections between the dormancy status of buds and their effectiveness in vascular water transport. We found large differences in the dormancy status between species throughout the entire investigation period, likely reflecting species-specific environmental requirements to initiate and release dormancy, whereas only small differences in the dormancy status were found between the two studied sites. We found strong 2H-labelled water uptake into buds during leaf senescence, followed by a sharp decrease, which we ascribed to the initiation of endodormancy. However, surprisingly, we did not find a progressive increase in 2H-labelled water uptake into buds as winter advanced. Nonetheless, all examined tree species exhibited a consistent relationship between bud water content and dormancy status. Our results suggest that short-term 2H-labelled water uptake may not be a robust indicator of dormancy release, yet it holds promise as a method for tracking the induction of dormancy in deciduous trees. By contrast, bud water content emerges as a cost-effective and more reliable indicator of dormancy release.
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Affiliation(s)
- Manuel G Walde
- Ecosystem Ecology, Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Bénédicte Wenden
- INRAE, Univ. Bordeaux, UMR Biologie du Fruit et Pathologie, 71 av. Edouard Bourlaux, 33140 Villenave d'Ornon, France
| | - Isabelle Chuine
- CEFE, Univ. Montpellier, CNRS, EPHE, IRD, 1919 route de Mende, 34293 Montpellier, France
| | - Arthur Gessler
- Ecosystem Ecology, Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
- Institute of Terrestrial Ecosystems, ETH Zurich (Swiss Federal Institute of Technology), Universitätsstrasse 16, 8092 Zurich, Switzerland
| | - Matthias Saurer
- Ecosystem Ecology, Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Yann Vitasse
- Ecosystem Ecology, Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
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10
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Sim SB, Congrains C, Velasco-Cuervo SM, Corpuz RL, Kauwe AN, Scheffler B, Geib SM. Genome report: chromosome-scale genome assembly of the West Indian fruit fly Anastrepha obliqua (Diptera: Tephritidae). G3 (Bethesda) 2024; 14:jkae024. [PMID: 38301265 PMCID: PMC10989853 DOI: 10.1093/g3journal/jkae024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 09/21/2023] [Accepted: 01/11/2024] [Indexed: 02/03/2024]
Abstract
The West Indian fruit fly, Anastrepha obliqua, is a major pest of mango in Central and South America and attacks more than 60 species of host fruits. To support current genetic and genomic research on A. obliqua, we sequenced the genome using high-fidelity long-read sequencing. This resulted in a highly contiguous contig assembly with 90% of the genome in 10 contigs. The contig assembly was placed in a chromosomal context using synteny with a closely related species, Anastrepha ludens, as both are members of the Anastrepha fraterculus group. The resulting assembly represents the five autosomes and the X chromosome which represents 95.9% of the genome, and 199 unplaced contigs representing the remaining 4.1%. Orthology analysis across the structural annotation sets of high quality tephritid genomes demonstrates the gene annotations are robust, and identified genes unique to Anastrepha species that may help define their pestiferous nature that can be used as a starting point for comparative genomics. This genome assembly represents the first of this species and will serve as a foundation for future genetic and genomic research in support of its management as an agricultural pest.
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Affiliation(s)
- Sheina B Sim
- USDA-ARS Daniel K. Inouye US Pacific Basin Agricultural Research Center, Tropical Pest Genetics and Molecular Biology Research Unit, Hilo, HI 96720, USA
| | - Carlos Congrains
- USDA-ARS Daniel K. Inouye US Pacific Basin Agricultural Research Center, Tropical Pest Genetics and Molecular Biology Research Unit, Hilo, HI 96720, USA
- Entomology Section, Department of Plant and Environmental Protection Sciences, University of Hawai’i at Mānoa Plant and Environmental Protection Sciences, Honolulu, HI 96822, USA
| | - Sandra M Velasco-Cuervo
- Department of Agricultural, Food, and Nutritional Sciences, University of Alberta, Edmonton, Alberta T6G 2P5, Canada
| | - Renee L Corpuz
- USDA-ARS Daniel K. Inouye US Pacific Basin Agricultural Research Center, Tropical Pest Genetics and Molecular Biology Research Unit, Hilo, HI 96720, USA
| | - Angela N Kauwe
- USDA-ARS Daniel K. Inouye US Pacific Basin Agricultural Research Center, Tropical Pest Genetics and Molecular Biology Research Unit, Hilo, HI 96720, USA
| | - Brian Scheffler
- USDA-ARS Jamie Whitten Delta States Research Center, Genetics and Bioinformatics Research Unit, Stoneville, MS 38776, USA
| | - Scott M Geib
- USDA-ARS Daniel K. Inouye US Pacific Basin Agricultural Research Center, Tropical Pest Genetics and Molecular Biology Research Unit, Hilo, HI 96720, USA
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11
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Couto JV, Pontes AJ, Feitosa CV, Pereira FB, Paschoal F. Redescription of Hatschekia exigua Pearse, 1951 (Copepoda: Hatschekiidae), parasitic on the Squirrelfish Holocentrus adscensionis (Osbeck, 1765) (Actinopterygii: Holocentridae) off Ceará, Northeastern Brazil, with first description of the male. Syst Parasitol 2024; 101:27. [PMID: 38568382 DOI: 10.1007/s11230-024-10151-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Accepted: 01/22/2024] [Indexed: 04/05/2024]
Abstract
The original description of Hatschekia exigua Pearse, 1951 neglected innumerous features of taxonomic value as well as morphometric data and illustrations. Posteriorly, other author tried to access the type material, but their poor state of preservation compromised a detailed redescription. Since then, this species is in need for new morphological data, mainly from fresh material. In the present work, three specimens of Holocentrus adscensionis from Mucuripe Bay, Fortaleza, State of Ceará, Northeastern Brazil, were parasitized by copepods on their gills. Parasites were fixed and preserved in 80% ethanol and cleared in 85% lactic acid for morphological observations using light microscopy. The females were identified as Hatschekia exigua by the cephalothorax representing about one-fourth of total body length, with lateral margins expanded into lateral lobes, first exopod with basal segment armed with one outer setae and terminal segment with three setae, first endopod with basal segment unarmed and terminal segment with five setae, leg 3 reduced to two setae and leg 4 reduced to single seta. Comparison with the type series revealed morphological differences in trunk and small appendages, which may be related to alterations in the specimens, caused by the mounting methodology and poor preservation. A detailed morphological analysis of the male revealed for the first time that they differ from their closest congeners by having five setae on the last endopodal segment of leg 1, by smooth intercoxal sclerites on legs 1 and 2 and by a proximolateral process on the third segment of antenna. Moreover, this work represents the first report of H. exigua in Brazil and the first hatschekiid copepod found off the coast of Ceará, highlighting that the diversity of Hatschekiidae in this oceanographic region still needs further investigation.
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Affiliation(s)
- João Victor Couto
- Programa de Pós-Graduação em Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antônio Carlos, 6627, Pampulha, Belo Horizonte, MG, 31270-901, Brazil
| | - Anna Júlia Pontes
- Faculdade de Ciências Biológicas e Saúde, Universidade do Estado do Rio de Janeiro, Campus Zona Oeste, Av. Manuel Caldeira de Alvarenga, 1203, Campo Grande, Rio de Janeiro, RJ, 23070-200, Brazil
| | - Caroline Vieira Feitosa
- Instituto de Ciências do Mar - Labomar, Universidade Federal do Ceará, Avenida da Abolição, 3207, Fortaleza, CE, 60165-081, Brazil
| | - Felipe Bisaggio Pereira
- Programa de Pós-Graduação em Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antônio Carlos, 6627, Pampulha, Belo Horizonte, MG, 31270-901, Brazil
| | - Fabiano Paschoal
- Programa de Pós-Graduação em Biodiversidade e Conservação, Departamento de Oceanografia e Limnologia, Universidade Federal do Maranhão, Av. dos Portugueses, 1966, Bacanga, São Luís, MA, 65080-805, Brazil.
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12
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Mansour A, Sarabeev V, Balbuena JA. Checklist of monogeneans from Egyptian marine fishes, including some newly collected species. Syst Parasitol 2024; 101:28. [PMID: 38568286 DOI: 10.1007/s11230-024-10150-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Accepted: 01/08/2024] [Indexed: 04/05/2024]
Abstract
A checklist of 113 monogenean species parasitizing marine fishes (60 species) from different localities in Egypt is provided. The list is supplemented by eight newly collected monogenean species from Red Sea fishes, off Safaga and El-Quseir. Five of these species are new Egyptian records: Calydiscoides euzeti Justine, 2007, Calydiscoides rohdei Oliver, 1984, Lethrinitrema austrosinense (Li & Chen, 2005) Sun, Li & Yang, 2014, Pseudohaliotrema sphincteroporus Yamaguti, 1953, and Pentatres sphyraenae Euzet & Razarihelisoa, 1959. Furthermore, Lutjanus ehrenbergii (Peters), Lethrinus nebulosus (Forsskål), Lethrinus mahsena (Forsskål), Siganus stellatus (Forsskål), and Sphyraena flavicauda Rüppell represent new host records. The current study also lists nine monogenean species from the Gulf of Aqaba for which the coordinates of the sampling localities were not clearly defined, but which could also belong to the Egyptian fauna as the gulf is part of the Red Sea basin. Dactylogyrus aegyptiacus Ramadan, 1983 is transferred to Ecnomotrema Kritsky, 2023 as E. aegyptiacum (Ramadan, 1983) n. comb. Entobdella aegyptiacus Amer, 1990, Polylabroides aegyptiacus Mahmoud & Shaheed 1998, Gotocotyla sigani Abdel Aal, Ghattas & Badawy, 2001, Neohexostoma epinepheli Abdel Aal, Ghattas & Badawy, 2001, Neothoracocotyle commersoni Abdel Aal, Ghattas & Badawy, 2001, Acleotrema maculatum Morsy, El Fayoumi & Fahmy, 2014, Diplectanum harid Morsy, El Fayoumi, Al Shahawy & Fahmy, 2014, and Pseudorhabdosynochus chlorostigma Morsy, El Fayoumi, Al Shahawy & Fahmy, 2014, are considered species inquirendae. Paranaella diplodae Bayoumy, Abd El-Hady & Hassanain, 2007 is considered incertae sedis. Allencotyla lutini El-Dien, 1995 and Lamellodiscus diplodicus Bayoumy, 2003 are regarded as nomina nuda.
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Affiliation(s)
- Ali Mansour
- Department of Zoology, Faculty of Science, South Valley University, Qena, 83523, Qena Governorate, Egypt.
| | - Volodimir Sarabeev
- Department of Biology, Zaporizhzhia National University, Zhukovskogo 66, Zaporizhzhia, 69063, Ukraine
- Institute of Parasitology, Slovak Academy of Sciences, Hlinkova 3, 04001, Košice, Slovak Republic
| | - Juan A Balbuena
- Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, PO Box 22085, 46071, Valencia, Spain
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13
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Willows JW, Alshahal Z, Story NM, Alves MJ, Vidal P, Harris H, Rodrigo R, Stanford KI, Peng J, Reifsnyder PC, Harrison DE, David Arnold W, Townsend KL. Contributions of mouse genetic strain background to age-related phenotypes in physically active HET3 mice. Neurobiol Aging 2024; 136:58-69. [PMID: 38325031 DOI: 10.1016/j.neurobiolaging.2024.01.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2023] [Revised: 01/06/2024] [Accepted: 01/22/2024] [Indexed: 02/09/2024]
Abstract
We assessed aging hallmarks in skin, muscle, and adipose in the genetically diverse HET3 mouse, and generated a broad dataset comparing these to individual animal diagnostic SNPs from the 4 founding inbred strains of the HET3 line. For middle- and old-aged HET3 mice, we provided running wheel exercise to ensure our observations were not purely representative of sedentary animals, but age-related phenotypes were not improved with running wheel activity. Adipose tissue fibrosis, peripheral neuropathy, and loss of neuromuscular junction integrity were consistent phenotypes in older-aged HET3 mice regardless of physical activity, but aspects of these phenotypes were moderated by the SNP% contributions of the founding strains for the HET3 line. Taken together, the genetic contribution of founder strain SNPs moderated age-related phenotypes in skin and muscle innervation and were dependent on biological sex and chronological age. However, there was not a single founder strain (BALB/cJ, C57BL/6J, C3H/HeJ, DBA/2J) that appeared to drive more protection or disease-risk across aging in this mouse line, but genetic diversity in general was more protective.
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Affiliation(s)
- Jake W Willows
- Department of Neurological Surgery, The Ohio State University, Columbus, OH, USA
| | - Zahra Alshahal
- Department of Neurological Surgery, The Ohio State University, Columbus, OH, USA
| | - Naeemah M Story
- Department of Neurological Surgery, The Ohio State University, Columbus, OH, USA
| | - Michele J Alves
- Department of Neurological Surgery, The Ohio State University, Columbus, OH, USA
| | - Pablo Vidal
- Department of Physiology and Cell Biology, The Ohio State University, Columbus, OH, USA
| | - Hallie Harris
- Department of Neurology, The Ohio State University, Columbus, OH, USA
| | - Rochelle Rodrigo
- Department of Neurology, The Ohio State University, Columbus, OH, USA
| | - Kristin I Stanford
- Department of Physiology and Cell Biology, The Ohio State University, Columbus, OH, USA
| | - Juan Peng
- Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA
| | | | | | - W David Arnold
- Department of Neurology, The Ohio State University, Columbus, OH, USA
| | - Kristy L Townsend
- Department of Neurological Surgery, The Ohio State University, Columbus, OH, USA.
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14
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Usui Y, Hanashima A, Hashimoto K, Kimoto M, Ohira M, Mohri S. Comparative analysis of ventricular stiffness across species. Physiol Rep 2024; 12:e16013. [PMID: 38644486 DOI: 10.14814/phy2.16013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Revised: 04/01/2024] [Accepted: 04/01/2024] [Indexed: 04/23/2024] Open
Abstract
Investigating ventricular diastolic properties is crucial for understanding the physiological cardiac functions in organisms and unraveling the pathological mechanisms of cardiovascular disorders. Ventricular stiffness, a fundamental parameter that defines ventricular diastolic functions in chordates, is typically analyzed using the end-diastolic pressure-volume relationship (EDPVR). However, comparing ventricular stiffness accurately across chambers of varying maximum volume capacities has been a long-standing challenge. As one of the solutions to this problem, we propose calculating a relative ventricular stiffness index by applying an exponential approximation formula to the EDPVR plot data of the relationship between ventricular pressure and values of normalized ventricular volume by the ventricular weight. This article reviews the potential, utility, and limitations of using normalized EDPVR analysis in recent studies. Herein, we measured and ranked ventricular stiffness in differently sized and shaped chambers using ex vivo ventricular pressure-volume analysis data from four animals: Wistar rats, red-eared slider turtles, masu salmon, and cherry salmon. Furthermore, we have discussed the mechanical effects of intracellular and extracellular viscoelastic components, Titin (Connectin) filaments, collagens, physiological sarcomere length, and other factors that govern ventricular stiffness. Our review provides insights into the comparison of ventricular stiffness in different-sized ventricles between heterologous and homologous species, including non-model organisms.
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Grants
- JP22K15155 Japan Society for the Promotion of Science, Grant/Award Number
- JP20K21453 Japan Society for the Promotion of Science, Grant/Award Number
- JP20H04508 Japan Society for the Promotion of Science, Grant/Award Number
- JP21K19933 Japan Society for the Promotion of Science, Grant/Award Number
- JP20H04521 Japan Society for the Promotion of Science, Grant/Award Number
- JP17H02092 Japan Society for the Promotion of Science, Grant/Award Number
- JP23H00556 Japan Society for the Promotion of Science, Grant/Award Number
- JP17H06272 Japan Society for the Promotion of Science, Grant/Award Number
- JP17H00859 Japan Society for the Promotion of Science, Grant/Award Number
- JP25560214 Japan Society for the Promotion of Science, Grant/Award Number
- JP16K01385 Japan Society for the Promotion of Science, Grant/Award Number
- JP26282127 Japan Society for the Promotion of Science, Grant/Award Number
- The Futaba research grant program
- Research Grant from the Kawasaki Foundation in 2016 from Medical Science and Medical Welfare
- Medical Research Grant in 2010 from Takeda Science Foundation
- R03S005 Research Project Grant from Kawasaki Medical School
- R03B050 Research Project Grant from Kawasaki Medical School
- R01B054 Research Project Grant from Kawasaki Medical School
- H30B041 Research Project Grant from Kawasaki Medical School
- H30B016 Research Project Grant from Kawasaki Medical School
- H27B10 Research Project Grant from Kawasaki Medical School
- R02B039 Research Project Grant from Kawasaki Medical School
- H28B80 Research Project Grant from Kawasaki Medical School
- R05B016 Research Project Grant from Kawasaki Medical School
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Affiliation(s)
- Yuu Usui
- First Department of Physiology, Kawasaki Medical School, Kurashiki, Okayama, Japan
| | - Akira Hanashima
- First Department of Physiology, Kawasaki Medical School, Kurashiki, Okayama, Japan
| | - Ken Hashimoto
- First Department of Physiology, Kawasaki Medical School, Kurashiki, Okayama, Japan
| | - Misaki Kimoto
- First Department of Physiology, Kawasaki Medical School, Kurashiki, Okayama, Japan
| | - Momoko Ohira
- First Department of Physiology, Kawasaki Medical School, Kurashiki, Okayama, Japan
| | - Satoshi Mohri
- First Department of Physiology, Kawasaki Medical School, Kurashiki, Okayama, Japan
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15
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Ruiz-Moreno A, Emslie MJ, Connolly SR. High response diversity and conspecific density-dependence, not species interactions, drive dynamics of coral reef fish communities. Ecol Lett 2024; 27:e14424. [PMID: 38634183 DOI: 10.1111/ele.14424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 03/11/2024] [Accepted: 03/14/2024] [Indexed: 04/19/2024]
Abstract
Species-to-species and species-to-environment interactions are key drivers of community dynamics. Disentangling these drivers in species-rich assemblages is challenging due to the high number of potentially interacting species (the 'curse of dimensionality'). We develop a process-based model that quantifies how intraspecific and interspecific interactions, and species' covarying responses to environmental fluctuations, jointly drive community dynamics. We fit the model to reef fish abundance time series from 41 reefs of Australia's Great Barrier Reef. We found that fluctuating relative abundances are driven by species' heterogenous responses to environmental fluctuations, whereas interspecific interactions are negligible. Species differences in long-term average abundances are driven by interspecific variation in the magnitudes of both conspecific density-dependence and density-independent growth rates. This study introduces a novel approach to overcoming the curse of dimensionality, which reveals highly individualistic dynamics in coral reef fish communities that imply a high level of niche structure.
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Affiliation(s)
- Alfonso Ruiz-Moreno
- College of Science and Engineering, James Cook University, Townsville, Queensland, Australia
- Australian Institute of Marine Science, Townsville, Queensland, Australia
- Smithsonian Tropical Research Institute, Panama City, Panama
| | - Michael J Emslie
- Australian Institute of Marine Science, Townsville, Queensland, Australia
| | - Sean R Connolly
- Smithsonian Tropical Research Institute, Panama City, Panama
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16
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Luc OT, Kangas BD. Validation of a touchscreen probabilistic reward task for mice: A reverse-translated assay with cross-species continuity. Cogn Affect Behav Neurosci 2024; 24:281-288. [PMID: 37770642 DOI: 10.3758/s13415-023-01128-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 09/06/2023] [Indexed: 09/30/2023]
Abstract
The Probabilistic Reward Task (PRT) is a laboratory-based technique used to objectively quantify responsivity to reward. The PRT was initially designed to identify reinforcement learning deficits in clinical populations and subsequently was reverse-translated for use in preclinical studies with rats and monkeys. In this task, subjects make visual discriminations and asymmetric probabilistic contingencies are arranged such that correct responses to one stimulus (rich) are reinforced more often than correct responses to the other (lean). Numerous studies have demonstrated that healthy subjects reliably develop a response bias toward the richly rewarded stimulus, whereas humans with anhedonia and laboratory animals with a history of chronic stress exhibit a blunted response bias. This is important because anhedonia, the loss of responsivity to previously rewarding stimuli, is a behavioral phenotype that is a cardinal feature of multiple neuropsychiatric conditions and is without approved pharmacotherapeutic options. To aid in addressing this critical treatment gap, this report describes validation of the first PRT designed for mice, which are a commonly utilized species in preclinical research toward neuropsychiatric medications development. Results reveal orderly psychophysical functions in response to asymmetric probabilistic contingencies in mice, with signal detection outcomes comparable to previous PRT findings in humans, rats, and monkeys. Taken together, such robust cross-species continuity in task performance confirms that the mouse is well-positioned to serve in bidirectional research efforts between human and animal laboratories. These efforts may accelerate the development of treatment options for anhedonia in the different neuropsychiatric conditions in which it is prominent.
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Affiliation(s)
- Oanh T Luc
- Harvard Medical School, McLean Hospital, 115 Mill Street, Belmont, MA, 02478, USA
| | - Brian D Kangas
- Harvard Medical School, McLean Hospital, 115 Mill Street, Belmont, MA, 02478, USA.
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17
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Opatova V, Bourguignon K, Bond JE. Species delimitation with limited sampling: An example from rare trapdoor spider genus Cyclocosmia (Mygalomorphae, Halonoproctidae). Mol Ecol Resour 2024; 24:e13894. [PMID: 37971187 DOI: 10.1111/1755-0998.13894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Revised: 10/24/2023] [Accepted: 10/31/2023] [Indexed: 11/19/2023]
Abstract
The outcome of species delimitation depends on many factors, including conceptual framework, study design, data availability, methodology employed and subjective decision making. Obtaining sufficient taxon sampling in endangered or rare taxa might be difficult, particularly when non-lethal tissue collection cannot be utilized. The need to avoid overexploitation of the natural populations may thus limit methodological framework available for downstream data analyses and bias the results. We test species boundaries in rare North American trapdoor spider genus Cyclocosmia Ausserer (1871) inhabiting the Southern Coastal Plain biodiversity hotspot with the use of genomic data and two multispecies coalescent model methods. We evaluate the performance of each methodology within a limited sampling framework. To mitigate the risk of species over splitting, common in taxa with highly structured populations, we subsequently implement a species validation step via genealogical diversification index (gdi), which accounts for both genetic isolation and gene flow. We delimited eight geographically restricted lineages within sampled North American Cyclocosmia, suggesting that major river drainages in the region are likely barriers to dispersal. Our results suggest that utilizing BPP in the species discovery step might be a good option for datasets comprising hundreds of loci, but fewer individuals, which may be a common scenario for rare taxa. However, we also show that such results should be validated via gdi, in order to avoid over splitting.
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Affiliation(s)
- Vera Opatova
- Department of Zoology, Faculty of Sciences, Charles University, Prague 2, Czech Republic
| | - Kellie Bourguignon
- Department of Biological Sciences, Auburn University, Auburn, Alabama, USA
| | - Jason E Bond
- Department of Entomology and Nematology, University of California, Davis, California, USA
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18
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Uno Y, Yamato O, Yamazaki H. Transcript abundance of hepatic drug-metabolizing enzymes in two dog breeds compared with 14 species including humans. Drug Metab Pharmacokinet 2024; 55:101002. [PMID: 38452615 DOI: 10.1016/j.dmpk.2024.101002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2023] [Revised: 01/10/2024] [Accepted: 01/19/2024] [Indexed: 03/09/2024]
Abstract
Drug-metabolizing enzymes are important in drug development and therapy, but have not been fully identified and characterized in many species, lines, and breeds. Liver transcriptomic data were analyzed for phase I cytochromes P450, flavin-containing monooxygenases, and carboxylesterases and phase II UDP-glucuronosyltransferases, sulfotransferases, and glutathione S-transferases. Comparisons with a variety of species (humans, rhesus macaques, African green monkeys, baboons, common marmosets, cattle, sheep, pigs, cats, dogs, rabbits, tree shrews, rats, mice, and chickens) revealed both general similarities and differences in the transcript abundances of drug-metabolizing enzymes. Similarly, Beagle and Shiba dogs were examined by next-generation sequencing (RNA-seq). Consequently, no substantial differences in transcript abundance were noted in different breeds of pigs and dogs and in different lines of mice and rats. Therefore, the expression profiles of hepatic drug-metabolizing enzyme transcripts appear to be similar in Shiba and Beagle dogs and pig breeds and the rat and mouse lines analyzed, although some differences were found in other species.
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Affiliation(s)
- Yasuhiro Uno
- Joint Faculty of Veterinary Medicine, Kagoshima University, Kagoshima-city, Kagoshima, 890-0065, Japan.
| | - Osamu Yamato
- Joint Faculty of Veterinary Medicine, Kagoshima University, Kagoshima-city, Kagoshima, 890-0065, Japan
| | - Hiroshi Yamazaki
- Showa Pharmaceutical University, Machida, Tokyo, 194-8543, Japan.
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19
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Nguyen HTM, Chu L, Liebhold AM, Epanchin-Niell R, Kean JM, Kompas T, Robinson AP, Brockerhoff EG, Moore JL. Optimal allocation of resources among general and species-specific tools for plant pest biosecurity surveillance. Ecol Appl 2024; 34:e2955. [PMID: 38379349 DOI: 10.1002/eap.2955] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 09/21/2023] [Accepted: 11/16/2023] [Indexed: 02/22/2024]
Abstract
This paper proposes a surveillance model for plant pests that can optimally allocate resources among survey tools with varying properties. While some survey tools are highly specific for the detection of a single pest species, others are more generalized. There is considerable variation in the cost and sensitivity of these tools, but there are no guidelines or frameworks for identifying which tools are most cost-effective when used in surveillance programs that target the detection of newly invaded populations. To address this gap, we applied our model to design a trapping surveillance program in New Zealand for bark- and wood-boring insects, some of the most serious forest pests worldwide. Our findings show that exclusively utilizing generalized traps (GTs) proves to be highly cost-effective across a wide range of scenarios, particularly when they are capable of capturing all pest species. Implementing surveillance programs that only employ specialized traps (ST) is cost-effective only when these traps can detect highly damaging pests. However, even in such cases, they significantly lag in cost-effectiveness compared to GT-only programs due to their restricted coverage. When both GTs and STs are used in an integrated surveillance program, the total expected cost (TEC) generally diminishes when compared to programs relying on a single type of trap. However, this relative reduction in TEC is only marginally larger than that achieved with GT-only programs, as long as highly damaging species can be detected by GTs. The proportion of STs among the optimal required traps fluctuates based on several factors, including the relative pricing of GTs and STs, pest arrival rates, potential damage, and, more prominently, the coverage capacity of GTs. Our analysis suggests that deploying GTs extensively across landscapes appears to be more cost-effective in areas with either very high or very low levels of relative risk density, potential damage, and arrival rate. Finally, STs are less likely to be required when the pests that are detected by those tools have a higher likelihood of successful eradication because delaying detection becomes less costly for these species.
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Affiliation(s)
- Hoa-Thi-Minh Nguyen
- Crawford School of Public Policy, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Long Chu
- Crawford School of Public Policy, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Andrew M Liebhold
- USDA Forest Service Northern Research Station, Morgantown, West Virginia, USA
- Czech University of Life Sciences, Faculty of Forestry and Wood Sciences, Prague, Czech Republic
| | - Rebecca Epanchin-Niell
- Department of Agricultural and Resource Economics, University of Maryland, College Park, Maryland, USA
| | - John M Kean
- AgResearch Limited, Ruakura Science Centre, Hamilton, New Zealand
| | - Tom Kompas
- Centre of Excellence for Biosecurity Risk Analysis, School of Biosciences and School of Ecosystem and Forest Sciences, University of Melbourne, Melbourne, Victoria, Australia
| | - Andrew P Robinson
- Centre of Excellence for Biosecurity Risk Analysis, Schools of Biosciences and Mathematics and Statistics, University of Melbourne, Melbourne, Victoria, Australia
| | - Eckehard G Brockerhoff
- Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, Switzerland
| | - Joslin L Moore
- Arthur Rylah Institute for Environmental Research, Department of Energy, Environment and Climate Action, Heidelberg, Victoria, Australia
- School of Biological Sciences, Monash University, Clayton, Victoria, Australia
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20
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Sugiura K, Terano T, Adachi H, Hagiwara J, Matsuda K, Nishida K, Hanson P, Kondo S, Gotoh H. Histological Observation of Helmet Development in the Treehopper Poppea capricornis (Insecta: Hemiptera: Membracidae). Zoolog Sci 2024; 41:167-176. [PMID: 38587911 DOI: 10.2108/zs230039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2023] [Accepted: 11/09/2023] [Indexed: 04/10/2024]
Abstract
The treehoppers (Hemiptera, Membracidae) are known for possessing a large three-dimensional structure called a helmet. Although some ecological functions of the helmet have already been elucidated, the developmental mechanisms underlying the complex and diverse morphology of the helmet are still largely unknown. The process of helmet formation was first described in Antianthe expansa, which possesses a simple roof-shaped helmet. However, the developmental process in species with more complex helmet morphologies remains largely unexplored. Hence, in this study, we used Poppea capricornis, which possesses a more complex helmet structure than A. expansa, to investigate the helmet development using paraffin sections, micro-CT, and scanning electronic microscopy. Our focus was on the overall helmet developmental process common to both species and formation of structures unique to Poppea and its comparison to Antianthe. As a result, we discovered that miniature structures were also formed in Poppea, similar to Antianthe, during the helmet formation. Common structures that were shared between the two species were discernible at this stage. Additionally, we observed that suprahumeral horns and posterior horns, two morphological traits specific to the Poppea helmet that are apparently similar anatomically, are formed through two distinctly different developmental mechanisms. The suprahumeral horns appeared to be formed by utilizing the nymphal suprahumeral bud as a mold, while we could not detect any nymphal structures potentially used for a mold in the posterior horns formation. Our findings suggest that the helmet formation mechanisms of Antianthe and Poppea employ a common mechanism but form species-specific structures by multiple mechanisms.
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Affiliation(s)
- Kanta Sugiura
- Department of Biological Science, Faculty of Science, Shizuoka University, Suruga Ward, Shizuoka City, Shizuoka 422-8529, Japan
- Department of Science, Graduate School of Integrated Science and Technology, Shizuoka University, Suruga-ku, Shizuoka City, Shizuoka 422-8529, Japan
| | - Tensho Terano
- Department of Biological Science, Faculty of Science, Shizuoka University, Suruga Ward, Shizuoka City, Shizuoka 422-8529, Japan
| | - Haruhiko Adachi
- Graduate School of Frontier Biosciences, Osaka University, Osaka 565-0871, Japan
| | - Jin Hagiwara
- Department of Biological Science, Faculty of Science, Shizuoka University, Suruga Ward, Shizuoka City, Shizuoka 422-8529, Japan
- Graduate School of Frontier Biosciences, Osaka University, Osaka 565-0871, Japan
| | - Keisuke Matsuda
- Graduate School of Frontier Biosciences, Osaka University, Osaka 565-0871, Japan
| | - Kenji Nishida
- Associate Researcher Museo de Zoología, Universidad de Costa Rica & Estación Biológica Monteverde, Apdo 22-5655, Monteverde, CostaRica
| | - Paul Hanson
- Escuela de Biología & Centro de Investigacion en Biodiversidad y Ecología Tropical (CIBET), Universidad de Costa Rica, San Pedro de Montes de Oca, San José, Costa Rica
| | - Shigeru Kondo
- Graduate School of Frontier Biosciences, Osaka University, Osaka 565-0871, Japan
| | - Hiroki Gotoh
- Department of Biological Science, Faculty of Science, Shizuoka University, Suruga Ward, Shizuoka City, Shizuoka 422-8529, Japan,
- Department of Science, Graduate School of Integrated Science and Technology, Shizuoka University, Suruga-ku, Shizuoka City, Shizuoka 422-8529, Japan
- Division of Bioscience, Graduate School of Science and Technology, Shizuoka University, Hamamatsu City, Shizuoka 432-8011, Japan
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21
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Nivinsky Margalit S, Slovin H. Encoding luminance surfaces in the visual cortex of mice and monkeys: difference in responses to edge and center. Cereb Cortex 2024; 34:bhae165. [PMID: 38652553 DOI: 10.1093/cercor/bhae165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2023] [Revised: 03/23/2024] [Accepted: 03/27/2024] [Indexed: 04/25/2024] Open
Abstract
Luminance and spatial contrast provide information on the surfaces and edges of objects. We investigated neural responses to black and white surfaces in the primary visual cortex (V1) of mice and monkeys. Unlike primates that use their fovea to inspect objects with high acuity, mice lack a fovea and have low visual acuity. It thus remains unclear whether monkeys and mice share similar neural mechanisms to process surfaces. The animals were presented with white or black surfaces and the population responses were measured at high spatial and temporal resolution using voltage-sensitive dye imaging. In mice, the population response to the surface was not edge-dominated with a tendency to center-dominance, whereas in monkeys the response was edge-dominated with a "hole" in the center of the surface. The population response to the surfaces in both species exhibited suppression relative to a grating stimulus. These results reveal the differences in spatial patterns to luminance surfaces in the V1 of mice and monkeys and provide evidence for a shared suppression process relative to grating.
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Affiliation(s)
- Shany Nivinsky Margalit
- The Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan 5290002, Israel
| | - Hamutal Slovin
- The Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan 5290002, Israel
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22
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Nanni A, Titus-McQuillan J, Bankole KS, Pardo-Palacios F, Signor S, Vlaho S, Moskalenko O, Morse A, Rogers RL, Conesa A, McIntyre LM. Nucleotide-level distance metrics to quantify alternative splicing implemented in TranD. Nucleic Acids Res 2024; 52:e28. [PMID: 38340337 PMCID: PMC10954468 DOI: 10.1093/nar/gkae056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 11/29/2023] [Accepted: 01/18/2024] [Indexed: 02/12/2024] Open
Abstract
Advances in affordable transcriptome sequencing combined with better exon and gene prediction has motivated many to compare transcription across the tree of life. We develop a mathematical framework to calculate complexity and compare transcript models. Structural features, i.e. intron retention (IR), donor/acceptor site variation, alternative exon cassettes, alternative 5'/3' UTRs, are compared and the distance between transcript models is calculated with nucleotide level precision. All metrics are implemented in a PyPi package, TranD and output can be used to summarize splicing patterns for a transcriptome (1GTF) and between transcriptomes (2GTF). TranD output enables quantitative comparisons between: annotations augmented by empirical RNA-seq data and the original transcript models; transcript model prediction tools for longread RNA-seq (e.g. FLAIR versus Isoseq3); alternate annotations for a species (e.g. RefSeq vs Ensembl); and between closely related species. In C. elegans, Z. mays, D. melanogaster, D. simulans and H. sapiens, alternative exons were observed more frequently in combination with an alternative donor/acceptor than alone. Transcript models in RefSeq and Ensembl are linked and both have unique transcript models with empirical support. D. melanogaster and D. simulans, share many transcript models and long-read RNAseq data suggests that both species are under-annotated. We recommend combined references.
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Affiliation(s)
- Adalena Nanni
- Department of Molecular Genetics and Microbiology, University of Florida, Gainesville, FL 32611, USA
- University of Florida Genetics Institute, University of Florida, Gainesville, FL 32611, USA
| | - James Titus-McQuillan
- University of North Carolina at Charlotte Department of Bioinformatics and Genomics Charlotte, NC, USA
| | - Kinfeosioluwa S Bankole
- Department of Molecular Genetics and Microbiology, University of Florida, Gainesville, FL 32611, USA
- University of Florida Genetics Institute, University of Florida, Gainesville, FL 32611, USA
| | | | - Sarah Signor
- Department of Biological Sciences, North Dakota State University, Fargo, ND, USA
| | - Srna Vlaho
- Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA
| | - Oleksandr Moskalenko
- University of Florida Research Computing, University of Florida, Gainesville, FL 32611, USA
| | - Alison M Morse
- Department of Molecular Genetics and Microbiology, University of Florida, Gainesville, FL 32611, USA
- University of Florida Genetics Institute, University of Florida, Gainesville, FL 32611, USA
| | - Rebekah L Rogers
- University of North Carolina at Charlotte Department of Bioinformatics and Genomics Charlotte, NC, USA
| | - Ana Conesa
- Institute for Integrative Systems Biology. Spanish National Research Council, Paterna, Spain
| | - Lauren M McIntyre
- Department of Molecular Genetics and Microbiology, University of Florida, Gainesville, FL 32611, USA
- University of Florida Genetics Institute, University of Florida, Gainesville, FL 32611, USA
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23
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Twomey A, Lovelock C. Global spatial dataset of mangrove genus distribution in seaward and riverine margins. Sci Data 2024; 11:306. [PMID: 38509068 PMCID: PMC10954639 DOI: 10.1038/s41597-024-03134-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 03/11/2024] [Indexed: 03/22/2024] Open
Abstract
Mangroves are nature-based solutions for coastal protection however their ability to attenuate waves and stabilise and accrete sediment varies with their species-specific architecture and frontal area. Hydrodynamic models are typically used to predict and assess the protection afforded by mangroves, but without species or genus distribution information, the results can be significantly different from reality. Data on the frontal genus of mangroves exposed to waves and tides can provide information that can be used in hydrodynamic models to more accurately forecast the protection benefit provided by mangroves. Globally, frontal species were identified from existing mangrove zonation diagrams to create a global mangrove genus distribution map. This dataset aims to improve the accuracy of hydrodynamic models. Data may be of interest to researchers in coastal engineering, marine science, wetland ecology and blue carbon.
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Affiliation(s)
- Alice Twomey
- School of the Environment, The University of Queensland, Brisbane, Queensland, 4067, Australia.
| | - Catherine Lovelock
- School of the Environment, The University of Queensland, Brisbane, Queensland, 4067, Australia
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24
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Buffry AD, Currea JP, Franke-Gerth FA, Palavalli-Nettimi R, Bodey AJ, Rau C, Samadi N, Gstöhl SJ, Schlepütz CM, McGregor AP, Sumner-Rooney L, Theobald J, Kittelmann M. Evolution of compound eye morphology underlies differences in vision between closely related Drosophila species. BMC Biol 2024; 22:67. [PMID: 38504308 PMCID: PMC10953123 DOI: 10.1186/s12915-024-01864-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Accepted: 03/07/2024] [Indexed: 03/21/2024] Open
Abstract
BACKGROUND Insects have evolved complex visual systems and display an astonishing range of adaptations for diverse ecological niches. Species of Drosophila melanogaster subgroup exhibit extensive intra- and interspecific differences in compound eye size. These differences provide an excellent opportunity to better understand variation in insect eye structure and the impact on vision. Here we further explored the difference in eye size between D. mauritiana and its sibling species D. simulans. RESULTS We confirmed that D. mauritiana have rapidly evolved larger eyes as a result of more and wider ommatidia than D. simulans since they recently diverged approximately 240,000 years ago. The functional impact of eye size, and specifically ommatidia size, is often only estimated based on the rigid surface morphology of the compound eye. Therefore, we used 3D synchrotron radiation tomography to measure optical parameters in 3D, predict optical capacity, and compare the modelled vision to in vivo optomotor responses. Our optical models predicted higher contrast sensitivity for D. mauritiana, which we verified by presenting sinusoidal gratings to tethered flies in a flight arena. Similarly, we confirmed the higher spatial acuity predicted for Drosophila simulans with smaller ommatidia and found evidence for higher temporal resolution. CONCLUSIONS Our study demonstrates that even subtle differences in ommatidia size between closely related Drosophila species can impact the vision of these insects. Therefore, further comparative studies of intra- and interspecific variation in eye morphology and the consequences for vision among other Drosophila species, other dipterans and other insects are needed to better understand compound eye structure-function and how the diversification of eye size, shape, and function has helped insects to adapt to the vast range of ecological niches.
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Affiliation(s)
- Alexandra D Buffry
- Department of Biological and Medical Sciences, Oxford Brookes University, Oxford, OX3 0BP, UK
| | - John P Currea
- Integrative Biology and Physiology, UCLA, Los Angeles, CA, 90095, USA
| | - Franziska A Franke-Gerth
- Molecular Evolution and Systematics of Animals, Institute of Biology, University of Leipzig, Talstrasse 33, 04103, Leipzig, Germany
| | - Ravindra Palavalli-Nettimi
- Institute of the Environment and Department of Biological Sciences, Florida International University, Miami, FL, USA
| | - Andrew J Bodey
- Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, UK
| | - Christoph Rau
- Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, UK
| | - Nazanin Samadi
- Swiss Light Source, Paul Scherrer Institute, Forschungsstrasse 111, 5232, Villigen PSI, Switzerland
| | - Stefan J Gstöhl
- Swiss Light Source, Paul Scherrer Institute, Forschungsstrasse 111, 5232, Villigen PSI, Switzerland
| | - Christian M Schlepütz
- Swiss Light Source, Paul Scherrer Institute, Forschungsstrasse 111, 5232, Villigen PSI, Switzerland
| | - Alistair P McGregor
- Department of Biosciences, Durham University, South Road, Durham, DH1 3LE, UK
| | - Lauren Sumner-Rooney
- Museum Für Naturkunde, Leibniz Institute for Evolution and Biodiversity Research, Berlin, 10115, Germany
| | - Jamie Theobald
- Institute of the Environment and Department of Biological Sciences, Florida International University, Miami, FL, USA
| | - Maike Kittelmann
- Department of Biological and Medical Sciences, Oxford Brookes University, Oxford, OX3 0BP, UK.
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25
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Duran DP, Laroche RA, Roman SJ, Godwin W, Herrmann DP, Bull E, Egan SP. Species delimitation, discovery and conservation in a tiger beetle species complex despite discordant genetic data. Sci Rep 2024; 14:6617. [PMID: 38503840 PMCID: PMC10951344 DOI: 10.1038/s41598-024-56875-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 03/12/2024] [Indexed: 03/21/2024] Open
Abstract
In an age of species declines, delineating and discovering biodiversity is critical for both taxonomic accuracy and conservation. In recent years, there has been a movement away from using exclusively morphological characters to delineate and describe taxa and an increase in the use of molecular markers to describe diversity or through integrative taxonomy, which employs traditional morphological characters, as well as genetic or other data. Tiger beetles are charismatic, of conservation concern, and much work has been done on the morphological delineation of species and subspecies, but few of these taxa have been tested with genetic analyses. In this study, we tested morphologically based taxonomic hypotheses of polymorphic tiger beetles in the Eunota circumpicta (LaFerté-Sénectère, 1841) species complex using multilocus genomic and mtDNA analyses. We find multiple cryptic species within the previous taxonomic concept of Eunota circumpicta, some of which were historically recognized as subspecies. We found that the mtDNA and genomic datasets did not identify the same taxonomic units and that the mtDNA was most at odds with all other genetic and morphological patterns. Overall, we describe new cryptic diversity, which raises important conservation concerns, and provide a working example for testing species and subspecies validity despite discordant data.
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Affiliation(s)
- Daniel P Duran
- Department of Environmental Science, Rowan University, Glassboro, NJ, 08028, USA.
| | - Robert A Laroche
- Department of BioSciences, Rice University, Houston, TX, 77005, USA
| | - Stephen J Roman
- Florida State Collection of Arthropods, Gainesville, FL, 32608, USA
| | - William Godwin
- Sam Houston State Natural History Collection, Huntsville, TX, 77340, USA
| | | | - Ethan Bull
- Department of BioSciences, Rice University, Houston, TX, 77005, USA
| | - Scott P Egan
- Department of BioSciences, Rice University, Houston, TX, 77005, USA
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26
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Sun JY, Huang RZ, Wang Q, Zhao YP, Yang SW, Cheng XF, Liu JF. Relationship between leaf vein traits of three dominant Quercus species and ecological factors in the Qinling Mountains, China. Ying Yong Sheng Tai Xue Bao 2024; 35:597-605. [PMID: 38646746 DOI: 10.13287/j.1001-9332.202403.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 04/23/2024]
Abstract
We investigated the inter- and intra-species differences of leaf vein traits of three dominant Quercus species, Q. wutaishanica, Q. aliena var. acutiserrata, and Q. variabilis of Niubeiling (subtropical humid climate) and Taohuagou (warm temperate semi-humid climate), located in the eastern and western Qinling Mountains. The nine examined leaf vein traits included primary leaf vein width, secondary leaf vein width, mean fine vein width, primary vein density, fine vein density, vein areole diameter, areole density, 3D fine vein surface area, and fine vein volume. We further elucidated the influencing mechanisms and regulatory pathways of biotic and abiotic factors on leaf vein traits. The results showed that species identity had significant effects on eight out of nine leaf vein traits except 3D fine vein surface area, while habitat had significant effects on primary leaf vein width, secondary leaf vein width, vein areole diameter, fine vein density, and areole density. Altitude had significant effects on primary vein density, mean fine vein width, vein areole diameter, fine vein density and areole density. Habitat, tree species identity, and altitude had significantly interactive effects on primary leaf vein density, 3D fine vein surface area, and fine vein volume. There were significant differences in primary leaf vein width, mean fine vein width, areole density, 3D fine vein surface area, fine vein volume, primary vein density of Q. wutaishanica between the two studied habitats, but the differences were only found in secondary leaf vein width and areole density of Q. aliena var. acutiserrata and Q. variabilis. The examined leaf vein traits were influenced both by biotic and abiotic factors, with varying effect sizes. Among the biotic factors, petiole length, leaf length and width ratio had strong effect on leaf vein traits. Among the abiotic factors, climatic and soil factors had high effect size on vein traits, with the former being higher than the latter. Leaf vein traits were affected directly by biotic factors, but indirectly by abiotic factors (soil and climatic factors) via regulating biotic factors (leaf stoichiometry and leaf phenotypic traits).
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Affiliation(s)
- Jing-Yi Sun
- State Key Laboratory of Efficient Production of Forest Resources/Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China
| | - Rui-Zhi Huang
- Institute of Forest Ecology, Environment and Nature Conservation, Chinese Academy of Forestry, Beijing 100091, China
| | - Qi Wang
- State Key Laboratory of Efficient Production of Forest Resources/Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China
| | - Yi-Pei Zhao
- State Key Laboratory of Efficient Production of Forest Resources/Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China
| | - Shao-Wei Yang
- State Key Laboratory of Efficient Production of Forest Resources/Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China
| | - Xiang-Fen Cheng
- State Key Laboratory of Efficient Production of Forest Resources/Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China
| | - Jian-Feng Liu
- State Key Laboratory of Efficient Production of Forest Resources/Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China
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27
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Henske J, Eltz T. Age-dependent perfume development in male orchid bees, Euglossa imperialis. J Exp Biol 2024; 227:jeb246995. [PMID: 38511547 PMCID: PMC11006377 DOI: 10.1242/jeb.246995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 02/24/2024] [Indexed: 03/22/2024]
Abstract
Male neotropical orchid bees concoct complex perfume blends by collecting exogenous volatiles from various sources, including orchids. These perfumes, stored in specialized hind-leg pouches and released during courtship, serve as inter-sexual signals. It has been hypothesized that male perfumes honestly indicate aspects of male fitness. If perfume traits such as quantity or complexity increase over individual lifetime, perfumes could reflect age (survival) and cumulative foraging success of males. We conducted a two-season mark-recapture study with Euglossa imperialis in Costa Rica, monitoring the balance of perfume uptake and expenditure over individual male lifetime. We sealed one hind-leg pouch upon initial capture, 'freezing' the perfume status on one side, and compared it with the other side at recapture to assess changes in perfume traits over time. Additionally, we used a novel method to estimate individual age by combining two parameters of wing degradation. Contrary to predictions, young to intermediate-aged bees had the highest quantities of perfume and the highest diversity of detected compounds. At the same time, the change in perfume between recaptures was positive (increase in amount and complexity) in young bees, whereas it was neutral to negative in older bees. Although these findings do not disprove an indicator function of male perfume, they shift the emphasis to non-cumulative fitness components such as sensory acuteness or cognitive capacity as likely targets of selection. Females preferring strong perfume signals in mates would maximize speed of foraging in offspring rather than their lifetime cumulative yield.
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Affiliation(s)
- Jonas Henske
- Department of Animal Ecology, Evolution and Biodiversity, Ruhr-Universität Bochum, 44801 Bochum, Germany
| | - Thomas Eltz
- Department of Animal Ecology, Evolution and Biodiversity, Ruhr-Universität Bochum, 44801 Bochum, Germany
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28
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Aneesh PT, Helna AK, Kumar AB. A new species of branchial fish parasitic deep-sea isopod, Brucethoa Aneesh, Hadfield, Smit & Kumar, 2020 (Isopoda: Cymothoidae) from the Indian Ocean, with the transfer of two Elthusa Schioedte & Meinert, 1884 species. Syst Parasitol 2024; 101:26. [PMID: 38478214 PMCID: PMC10937810 DOI: 10.1007/s11230-024-10149-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Accepted: 01/06/2024] [Indexed: 03/17/2024]
Abstract
Brucethoa isro n. sp., a new species of deep-sea cymothoid is described and illustrated from the host fish Spinyjaw greeneye, Chlorophthalmus corniger Alcock, 1894, at depths of 265 to 458 metres from the southwest coast of India. Brucethoa isro n. sp. is recovered from the base of the gill cavity, facing the head towards the anterior, and the dorsal body closely adpressed against the gill, while the ventral brood presses against the inner wall of the operculum. Brucethoa isro n. sp., the second species of the genus, is characterized by: head weakly immersed in pereonite 1, very elongated body (3.15 times as long as wide); body dorsum not vaulted, almost flat; all coxae short, 0.5 times as the length of corresponding pereonites; sternite 7 with prominent posterior lobes. All adult life stages of the new species are described [including females (ovigerous and non-ovigerous), males, transitional, and juvenile. The species is currently known from the southwest coast of India and is the type locality. Additionally, this research provides valuable ecological insights into Brucethoa isro n. sp. and its habitat. As part of the taxonomic contributions, two species, Brucethoa alvaradoensis (Rocha-Ramírez, Chávez-López & Bruce, 2005) comb. n. and Brucethoa epinepheli (Trilles & Justine, 2010) comb. n., are transferred from the Elthusa genus to the Brucethoa genus.
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Affiliation(s)
- Panakkool Thamban Aneesh
- Blue Innovation Division, Seto Inland Sea Carbon Neutral Research Center, Graduate School of Integrated Sciences for Life, Hiroshima University, 5-8-1 Minato-machi, Trivandrum, Hiroshima, 725-0024, Japan.
- Travancore Nature History Society (TNHS), MBRRA, Mathrubhumi Road, Vanchiyoor, Trivandrum, Kerala, 695035, India.
| | | | - Appukuttannair Biju Kumar
- Department of Aquatic Biology and Fisheries, University of Kerala, Karyavattom, Thiruvananthapuram, Kerala, 695 581, India
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29
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Presswell B, Bennett J. Description and molecular data of a new cestode parasite, Cladotaenia anomala n. sp. (Paruterinidae) from the Australasian harrier (Circus approximans Peale) in New Zealand. Syst Parasitol 2024; 101:25. [PMID: 38446319 PMCID: PMC10917862 DOI: 10.1007/s11230-024-10147-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Accepted: 01/02/2024] [Indexed: 03/07/2024]
Abstract
Currently comprising 12 species infecting the gastrointestinal tracts of diurnal raptors (Falconiformes, Accipitriformes), species of Cladotaenia are diagnosed by their branching uterus, testes in two fields reaching the same level anteriorly, and small rostellum armed with taenioid hooks arranged in two rows. In this study we describe a new species of Cladotaenia recovered from a number of Australasian harriers Circus approximans, from the southern half of South Island, New Zealand. The new species is distinguished from other species by its single circle of hooks. It is closest, morphologically, to C. circi, but differs in the shape of the terminal proglottids and the number of uterine branches. Sequences of 28S and cox1 gene are presented. Genetically, Cladotaenia anomala n. sp. is closest to Cladotaenia globifera but differs morphologically in the size of the suckers, testes and eggs. This description constitutes the first record of a Cladotaenia species in New Zealand. We discuss some potential routes this parasite may have taken to arrive in New Zealand.
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Affiliation(s)
- Bronwen Presswell
- Department of Zoology, University of Otago, PO Box 56, Dunedin, New Zealand.
| | - Jerusha Bennett
- Department of Zoology, University of Otago, PO Box 56, Dunedin, New Zealand
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30
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Ogawa K, Shirakashi S, Sata N, Itoh N, Ito S, Lewisch E, Bornstein S. Description of Discocotyle ciray n. sp. (Monogenea: Discocotylidae) from Parahucho perryi (Brevoort) from Hokkaido, Japan, with a redescription of D. sagittata (Leuckart, 1842). Syst Parasitol 2024; 101:24. [PMID: 38436733 DOI: 10.1007/s11230-023-10146-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2023] [Accepted: 12/29/2023] [Indexed: 03/05/2024]
Abstract
Discocotyle sagittata (Leuckart, 1842) (Monogenea: Discocotylidae) is redescribed, based on specimens collected from the type host, Salmo trutta Linnaeus, from the type locality, Freiburg, Germany, supplemented with specimens from S. trutta and rainbow trout, Oncorhynchus mykiss (Walbaum) reared in an Austrian aquarium. The diagnosis of the genus Discocotyle Diesing, 1850 is emended. Discocotyle ciray n. sp. is described, based on immature, preadult and adult specimens from the salmonid, Parahucho perryi (Brevoort) at Eniwa, Hokkaido, Japan. Adult specimens of the new species were about twice as large as those of D. sagittata from S. trutta. When the type specimens of D. ciray n. sp. were examined together with museum specimens from P. perryi at Tsurui, Hokkaido, the body and clamp sizes were positively correlated to the host size. Their measurements from a smaller P. perryi at Tsurui overlapped with those of D. sagittata, showing that these size differences were not suitable differentiating keys. Discocotyle ciray n. sp. can be separated from D. sagittata by the morphologies of the female genital system (relatively anteriorly positioned ovary, short joint vaginal duct and much more strongly winding uterus). The genetic distances of COI mtDNA sequence between D. ciray n. sp. and D. sagittata were 18.0-18.6%. These remarkable genetic divergences also supported the distinct taxonomic status of D. ciray n. sp.
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Affiliation(s)
- Kazuo Ogawa
- Meguro Parasitological Museum, Meguro-ku, Tokyo, 164-0053, Japan.
| | - Sho Shirakashi
- Aquaculture Research Institute, Kindai University, Wakayama, 649-2211, Japan
| | - Naoya Sata
- Meguro Parasitological Museum, Meguro-ku, Tokyo, 164-0053, Japan
| | - Naoki Itoh
- Laboratory of Fish Diseases, Department of Aquatic Bioscience, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657, Japan
| | - Shingo Ito
- Salmon and Freshwater Fisheries Research Institute, Fisheries Research Department, Hokkaido Research Organization, Eniwa, 061-1433, Japan
| | - Eva Lewisch
- Clinical Division of Fish Medicine, University of Veterinary Medicine, Vienna, Austria
| | - Stephanie Bornstein
- Veterinary Parasitology, Diagnostics of Fish Diseases, Fish Health Service, CVUA Freiburg, 79108, Freiburg, Germany
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31
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de Souza GT, Torquato IHS, Castro CC. Understanding the relations between Solanaceae crops and their pollinators: a global meta-network. Plant Biol (Stuttg) 2024; 26:157-165. [PMID: 38192089 DOI: 10.1111/plb.13616] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 11/14/2023] [Indexed: 01/10/2024]
Abstract
Crop-pollinator interactions are essential for world food security. Studying crop pollination from a network approach allows identification of target pollinators for conservation and management, and gaps in our knowledge. Solanaceae represents the third highest ranked family based on economic value, and its production is highly improved by animal pollination. This study aimed to integrate global data on solanaceous crop pollination and analyse the interaction patterns using a meta-network approach. Our questions were: (i) how are interactions structured and what are the structuring roles of species; and (ii) what are the main gaps in our knowledge? Data were obtained through a systematic review of the main scientific databases. The network structure was described using connectivity and modularity calculations, and the role of species using centrality metrics. The 251 pollinator species reported were in seven orders, mainly Hymenoptera (84.9%). The generalists Bombus and Apis species were the most common pollinators. The meta-network was modular, and all modules mostly included bees. Most species were peripherals, around 12% were connectors, and there were no module hubs. Apis mellifera was the only network hub (supergeneralist). The most important pollinators are the most managed pollinators worldwide; however, many native species play a role in structuring the meta-network. Main gaps include species of importance to pepper pollination, lack of species-specific identification, and the need for more robust experimental studies evaluating the pollination efficiency of native, manageable bees.
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Affiliation(s)
- G T de Souza
- Programa de Pós-Graduação em Biodiversidade, Universidade Federal Rural de Pernambuco, Recife, Pernambuco, Brazil
| | - I H S Torquato
- Programa de Pós-Graduação em Biodiversidade, Universidade Federal Rural de Pernambuco, Recife, Pernambuco, Brazil
| | - C C Castro
- Programa de Pós-Graduação em Biodiversidade, Universidade Federal Rural de Pernambuco, Recife, Pernambuco, Brazil
- Universidade Federal do Agreste de Pernambuco, Garanhuns, Pernambuco, Brazil
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Dai J, Chen T, Meng R, Jardi F, Kourula S, Pham L, De Jonghe S, De Smedt A, Frisk AL, Xie J. Species differences in small intestinal exposure-related epithelial vacuolation in rats and dogs treated with a heteroaryldihydropyrimidine molecule. J Appl Toxicol 2024; 44:400-414. [PMID: 37814191 DOI: 10.1002/jat.4550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 09/18/2023] [Accepted: 09/20/2023] [Indexed: 10/11/2023]
Abstract
Small intestinal epithelial vacuolation induced by a heteroaryldihydropyrimidine compound (HAP-1) was observed in rats but not in dogs at termination in screening toxicity studies, despite the plasma exposure being higher in dogs. To understand the species differences, investigational studies with multiple time points following single dose (SD) and 7-day repeated dose (RD) were conducted in both species at doses resulting in comparable plasma exposures. In rats, epithelial vacuolation in the duodenum and jejunum were observed at all time points. In dogs, transient vacuolation was noted at 8 h post-SD (SD_8h) and 4 h post-RD (RD_4 h), but not at termination (RD_24 h). Special stains demonstrated lipid accumulation within enterocytes in both species and intracytoplasmic inclusion bodies in rats. Transmission electron microscopy identified these inclusion bodies as endoplasmic reticulum (ER) membranous structures. Transcriptomic analysis on jejunal mucosa at SD_8 h and RD_24 h revealed perturbations of lipid metabolism-related genes at SD_8 h in both species, but not at RD_24 h in dogs. ER stress-related gene changes at both time points were observed in rats only. Despite comparable HAP-1 plasma exposures, the duodenum and jejunum tissue concentrations of HAP-1 and acyl glucuronide metabolite were >5- and >30-fold higher in rats than in dogs, respectively. In vitro, similar cytotoxicity was observed in rat and dog duodenal organoids treated with HAP-1. In conclusion, HAP-1-induced intestinal epithelial vacuolation was related to lipid metabolism dysregulation in both species and ER-related injuries in rats only. The species differences were likely related to the difference in intestinal exposure to HAP-1 and its reactive metabolite.
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Affiliation(s)
- Jieyu Dai
- Preclinical Sciences and Translational Safety (PSTS), Janssen R&D, Shanghai, China
| | - Tao Chen
- Preclinical Sciences and Translational Safety (PSTS), Janssen R&D, Shanghai, China
| | - Ryan Meng
- Preclinical Sciences and Translational Safety (PSTS), Janssen R&D, Shanghai, China
| | | | | | - Ly Pham
- PSTS, Janssen Pharmaceuticals Inc., Spring House, Pennsylvania, USA
| | | | | | | | - Jianxun Xie
- Preclinical Sciences and Translational Safety (PSTS), Janssen R&D, Shanghai, China
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Hülsmann L, Chisholm RA, Comita L, Visser MD, de Souza Leite M, Aguilar S, Anderson-Teixeira KJ, Bourg NA, Brockelman WY, Bunyavejchewin S, Castaño N, Chang-Yang CH, Chuyong GB, Clay K, Davies SJ, Duque A, Ediriweera S, Ewango C, Gilbert GS, Holík J, Howe RW, Hubbell SP, Itoh A, Johnson DJ, Kenfack D, Král K, Larson AJ, Lutz JA, Makana JR, Malhi Y, McMahon SM, McShea WJ, Mohamad M, Nasardin M, Nathalang A, Norden N, Oliveira AA, Parmigiani R, Perez R, Phillips RP, Pongpattananurak N, Sun IF, Swanson ME, Tan S, Thomas D, Thompson J, Uriarte M, Wolf AT, Yao TL, Zimmerman JK, Zuleta D, Hartig F. Latitudinal patterns in stabilizing density dependence of forest communities. Nature 2024; 627:564-571. [PMID: 38418889 PMCID: PMC10954553 DOI: 10.1038/s41586-024-07118-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2022] [Accepted: 01/25/2024] [Indexed: 03/02/2024]
Abstract
Numerous studies have shown reduced performance in plants that are surrounded by neighbours of the same species1,2, a phenomenon known as conspecific negative density dependence (CNDD)3. A long-held ecological hypothesis posits that CNDD is more pronounced in tropical than in temperate forests4,5, which increases community stabilization, species coexistence and the diversity of local tree species6,7. Previous analyses supporting such a latitudinal gradient in CNDD8,9 have suffered from methodological limitations related to the use of static data10-12. Here we present a comprehensive assessment of latitudinal CNDD patterns using dynamic mortality data to estimate species-site-specific CNDD across 23 sites. Averaged across species, we found that stabilizing CNDD was present at all except one site, but that average stabilizing CNDD was not stronger toward the tropics. However, in tropical tree communities, rare and intermediate abundant species experienced stronger stabilizing CNDD than did common species. This pattern was absent in temperate forests, which suggests that CNDD influences species abundances more strongly in tropical forests than it does in temperate ones13. We also found that interspecific variation in CNDD, which might attenuate its stabilizing effect on species diversity14,15, was high but not significantly different across latitudes. Although the consequences of these patterns for latitudinal diversity gradients are difficult to evaluate, we speculate that a more effective regulation of population abundances could translate into greater stabilization of tropical tree communities and thus contribute to the high local diversity of tropical forests.
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Affiliation(s)
- Lisa Hülsmann
- Ecosystem Analysis and Simulation (EASI) Lab, University of Bayreuth, Bayreuth, Germany.
- Theoretical Ecology, University of Regensburg, Regensburg, Germany.
- Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, Germany.
| | - Ryan A Chisholm
- Department of Biological Sciences, National University of Singapore, Singapore, Singapore
| | - Liza Comita
- School of the Environment, Yale University, New Haven, CT, USA
- Smithsonian Tropical Research Institute, Panama City, Panama
| | - Marco D Visser
- Institute of Environmental Sciences, Leiden University, Leiden, The Netherlands
| | | | - Salomon Aguilar
- Forest Global Earth Observatory, Smithsonian Tropical Research Institute, Panama City, Panama
| | - Kristina J Anderson-Teixeira
- Forest Global Earth Observatory, Smithsonian Tropical Research Institute, Panama City, Panama
- Conservation Ecology Center, Smithsonian's National Zoo & Conservation Biology Institute, Front Royal, VA, USA
| | - Norman A Bourg
- Conservation Ecology Center, Smithsonian's National Zoo & Conservation Biology Institute, Front Royal, VA, USA
| | - Warren Y Brockelman
- National Biobank of Thailand (NBT), National Science and Technology Development Agency, Bangkok, Thailand
- Institute of Molecular Biosciences, Mahidol University, Nakhon Pathom, Thailand
| | - Sarayudh Bunyavejchewin
- Thai Long Term Forest Ecological Research Project, Department of Forest Biology, Faculty of Forestry, Kasetsart University, Bangkok, Thailand
| | - Nicolas Castaño
- Instituto Amazónico de Investigaciones Científicas Sinchi, Bogotá, Colombia
| | - Chia-Hao Chang-Yang
- Department of Biological Sciences, National Sun Yat-sen University, Kaohsiung, Taiwan
| | | | - Keith Clay
- Department of Ecology and Evolutionary Biology, Tulane University, New Orleans, LA, USA
| | - Stuart J Davies
- Forest Global Earth Observatory, Smithsonian Tropical Research Institute, Washington, DC, USA
| | - Alvaro Duque
- Departamento de Ciencias Forestales, Universidad Nacional de Colombia Sede Medellín, Medellín, Colombia
| | - Sisira Ediriweera
- Department of Science and Technology, Uva Wellassa University, Badulla, Sri Lanka
| | | | - Gregory S Gilbert
- Environmental Studies Department, University of California, Santa Cruz, Santa Cruz, CA, USA
| | - Jan Holík
- Department of Forest Ecology, Silva Tarouca Research Institute, Brno, Czech Republic
| | - Robert W Howe
- Cofrin Center for Biodiversity, Department of Biology, University of Wisconsin-Green Bay, Green Bay, WI, USA
| | - Stephen P Hubbell
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, USA
| | - Akira Itoh
- Graduate School of Science, Osaka Metropolitan University, Osaka, Japan
| | - Daniel J Johnson
- School of Forest, Fisheries, and Geomatics Sciences, University of Florida, Gainesville, FL, USA
| | - David Kenfack
- Global Earth Observatory (ForestGEO), Smithsonian Tropical Research Institute, Washington, DC, USA
| | - Kamil Král
- Department of Forest Ecology, Silva Tarouca Research Institute, Brno, Czech Republic
| | - Andrew J Larson
- Department of Forest Management, University of Montana, Missoula, MT, USA
- Wilderness Institute, University of Montana, Missoula, MT, USA
| | - James A Lutz
- Department of Wildland Resources, Utah State University, Logan, UT, USA
| | | | - Yadvinder Malhi
- Environmental Change Institute, School of Geography and the Environment, University of Oxford, Oxford, UK
| | - Sean M McMahon
- Forest Global Earth Observatory, Smithsonian Tropical Research Institute, Washington, DC, USA
- Smithsonian Environmental Research Center, Edgewater, MD, USA
| | - William J McShea
- Conservation Ecology Center, Smithsonian's National Zoo & Conservation Biology Institute, Front Royal, VA, USA
| | | | | | - Anuttara Nathalang
- National Biobank of Thailand (NBT), National Science and Technology Development Agency, Bangkok, Thailand
| | - Natalia Norden
- Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Bogotá, Colombia
| | | | - Renan Parmigiani
- Department of Ecology, University of São Paulo, São Paulo, Brazil
| | - Rolando Perez
- Forest Global Earth Observatory, Smithsonian Tropical Research Institute, Panama City, Panama
| | | | | | - I-Fang Sun
- Department of Natural Resources and Environmental Studies, National Donghwa University, Hualien, Taiwan
| | - Mark E Swanson
- School of the Environment, Washington State University, Pullman, WA, USA
| | | | - Duncan Thomas
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA
| | - Jill Thompson
- UK Centre for Ecology & Hydrology, Bush Estate, Penicuik, UK
| | - Maria Uriarte
- Department of Ecology, Evolution & Environmental Biology, Columbia University, New York, NY, USA
| | - Amy T Wolf
- Department of Biology, University of Wisconsin-Green Bay, Green Bay, WI, USA
| | - Tze Leong Yao
- Forest Research Institute Malaysia, Kepong, Malaysia
| | - Jess K Zimmerman
- Department of Environmental Science, University of Puerto Rico, Rio Piedras, USA
| | - Daniel Zuleta
- Forest Global Earth Observatory, Smithsonian Tropical Research Institute, Washington, DC, USA
| | - Florian Hartig
- Theoretical Ecology, University of Regensburg, Regensburg, Germany
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Beasley EM. Ecologically informed priors improve Bayesian model estimates of species richness and occupancy for undetected species. Ecol Appl 2024; 34:e2941. [PMID: 38185514 DOI: 10.1002/eap.2941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Revised: 08/21/2023] [Accepted: 10/26/2023] [Indexed: 01/09/2024]
Abstract
Detection error can bias observations of ecological processes, especially when some species are never detected during sampling. In many communities, the probable identity of these missing species is known from previous research and natural history collections, but this information is rarely incorporated into subsequent models. Here, I present prior aggregation as a method for including information from external sources in Bayesian hierarchical detection models. Prior aggregation combines information from multiple prior distributions, in this case, an ecologically informative, species-level prior, and an uninformative community-level prior. This approach incorporates external information into the model without sacrificing the advantages of modeling species in the context of the community. Using simulated data supplied to a multispecies occupancy model, I demonstrated that prior aggregation improves estimates of (1) metacommunity richness and (2) environmental covariates were associated with species-specific occupancy probabilities. When applied to a dataset of small mammals in Vermont, prior aggregation allowed the model to estimate occupancy correlates of the Eastern cottontail Sylvilagus floridanus, a species observed at several sites in the region but never captured. Prior aggregation can be used to improve the analysis of several important metrics in population and community ecology, including abundance, survivorship, and diversity.
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Affiliation(s)
- Emily M Beasley
- Department of Biology, University of Vermont, Burlington, Vermont, USA
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35
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Cheng Y, Lei F. Avian lower beak is always overlooked: its coordinate role in shaping species-specific beak should not be underestimated. Integr Zool 2024; 19:339-342. [PMID: 37794566 DOI: 10.1111/1749-4877.12769] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/06/2023]
Affiliation(s)
- Yalin Cheng
- College of Life Science/Hebei Basic Science Center for Biotic Interactions, Institute of Life Science and Green Development, Hebei University, Baoding, China
- Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Fumin Lei
- Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
- Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, China
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Truong A, Barton M, Tran U, Mellody M, Berger D, Madory D, Hitch E, Jibrael B, Nikolaidis N, Luchko T, Keppetipola N. Unstructured linker regions play a role in the differential splicing activities of paralogous RNA binding proteins PTBP1 and PTBP2. J Biol Chem 2024; 300:105733. [PMID: 38336291 PMCID: PMC10914480 DOI: 10.1016/j.jbc.2024.105733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 01/23/2024] [Accepted: 02/02/2024] [Indexed: 02/12/2024] Open
Abstract
RNA Binding Proteins regulate, in part, alternative pre-mRNA splicing and, in turn, gene expression patterns. Polypyrimidine tract binding proteins PTBP1 and PTBP2 are paralogous RNA binding proteins sharing 74% amino acid sequence identity. Both proteins contain four structured RNA-recognition motifs (RRMs) connected by linker regions and an N-terminal region. Despite their similarities, the paralogs have distinct tissue-specific expression patterns and can regulate discrete sets of target exons. How two highly structurally similar proteins can exert different splicing outcomes is not well understood. Previous studies revealed that PTBP2 is post-translationally phosphorylated in the unstructured N-terminal, Linker 1, and Linker 2 regions that share less sequence identity with PTBP1 signifying a role for these regions in dictating the paralog's distinct splicing activities. To this end, we conducted bioinformatics analysis to determine the evolutionary conservation of RRMs versus linker regions in PTBP1 and PTBP2 across species. To determine the role of PTBP2 unstructured regions in splicing activity, we created hybrid PTBP1-PTBP2 constructs that had counterpart PTBP1 regions swapped to an otherwise PTBP2 protein and assayed on differentially regulated exons. We also conducted molecular dynamics studies to investigate how negative charges introduced by phosphorylation in PTBP2 unstructured regions can alter their physical properties. Collectively, results from our studies reveal an important role for PTBP2 unstructured regions and suggest a role for phosphorylation in the differential splicing activities of the paralogs on certain regulated exons.
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Affiliation(s)
- Anthony Truong
- Department of Chemistry and Biochemistry, California State University Fullerton, Fullerton, California, USA
| | - Michael Barton
- Department of Physics and Astronomy, California State University, Northridge, Northridge, California, USA
| | - Uyenphuong Tran
- Department of Chemistry and Biochemistry, California State University Fullerton, Fullerton, California, USA
| | - Montana Mellody
- Department of Chemistry and Biochemistry, California State University Fullerton, Fullerton, California, USA
| | - Devon Berger
- Department of Biological Sciences, California State University Fullerton, Fullerton, California, USA
| | - Dean Madory
- Department of Biological Science, Santa Ana College, Santa Ana, California, USA
| | - Elizabeth Hitch
- Department of Biological Sciences, California State University Fullerton, Fullerton, California, USA
| | - Basma Jibrael
- Department of Chemistry and Biochemistry, California State University Fullerton, Fullerton, California, USA
| | - Nikolas Nikolaidis
- Department of Biological Sciences, California State University Fullerton, Fullerton, California, USA
| | - Tyler Luchko
- Department of Physics and Astronomy, California State University, Northridge, Northridge, California, USA.
| | - Niroshika Keppetipola
- Department of Chemistry and Biochemistry, California State University Fullerton, Fullerton, California, USA.
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Shizu R, Makida N, Sobe K, Ishimura M, Takeshita A, Hosaka T, Kanno Y, Sasaki T, Yoshinari K. Interaction with YAP underlies the species differences between humans and rodents in CAR-dependent hepatocyte proliferation. Toxicol Sci 2024; 198:101-112. [PMID: 38128062 DOI: 10.1093/toxsci/kfad129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2023] Open
Abstract
Constitutive androstane receptor (CAR), a nuclear receptor predominantly expressed in the liver, is activated by diverse chemicals and induces hepatocyte proliferation and hepatocarcinogenesis in rodents. However, the underlying mechanism responsible for CAR-dependent hepatocyte proliferation remains unclear. Importantly, this phenomenon has not been observed in the human liver. This study aimed to investigate the molecular mechanism underlying CAR-induced hepatocyte proliferation and to explore the species differences in hepatocyte proliferation between humans and rodents. Treatment of mice with the CAR activator TCPOBOP induced hepatocyte proliferation and nuclear accumulation of yes-associated protein (YAP), a known liver cancer inducer. This induction was abolished in CAR-knockout mice. Exogenously expressed YAP in cultured cells was accumulated in the nucleus by the coexpression with mouse CAR but not human CAR. Pull-down analysis of recombinant proteins revealed that mouse CAR interacted with YAP, whereas human CAR did not. Further investigations using YAP deletion mutants identified the WW domain of YAP as essential for interacting with CAR and showed that the PY motif (PPAY) in mouse CAR was crucial for binding to the WW domain, whereas human CAR with its mutated motif (PPAH) failed to interact with YAP. A mouse model harboring the Y150H mutation (PPAY to PPAH) in CAR displayed drastically attenuated TCPOBOP-induced hepatocyte proliferation and nuclear accumulation of YAP. CAR induces the nuclear accumulation of YAP through the PY motif-WW domain interaction to promote hepatocyte proliferation. The absence of this interaction in human CAR contributes to the lack of CAR-dependent hepatocyte proliferation in human livers.
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Affiliation(s)
- Ryota Shizu
- Laboratory of Molecular Toxicology, School of Pharmaceutical Sciences, University of Shizuoka, Suruga-ku, Shizuoka 422-8526, Japan
| | - Natsuki Makida
- Laboratory of Molecular Toxicology, School of Pharmaceutical Sciences, University of Shizuoka, Suruga-ku, Shizuoka 422-8526, Japan
| | - Keiichiro Sobe
- Laboratory of Molecular Toxicology, School of Pharmaceutical Sciences, University of Shizuoka, Suruga-ku, Shizuoka 422-8526, Japan
| | - Mai Ishimura
- Laboratory of Molecular Toxicology, School of Pharmaceutical Sciences, University of Shizuoka, Suruga-ku, Shizuoka 422-8526, Japan
| | - Aki Takeshita
- Laboratory of Molecular Toxicology, School of Pharmaceutical Sciences, University of Shizuoka, Suruga-ku, Shizuoka 422-8526, Japan
| | - Takuomi Hosaka
- Laboratory of Molecular Toxicology, School of Pharmaceutical Sciences, University of Shizuoka, Suruga-ku, Shizuoka 422-8526, Japan
| | - Yuichiro Kanno
- Laboratory of Molecular Toxicology, School of Pharmaceutical Sciences, University of Shizuoka, Suruga-ku, Shizuoka 422-8526, Japan
| | - Takamitsu Sasaki
- Laboratory of Molecular Toxicology, School of Pharmaceutical Sciences, University of Shizuoka, Suruga-ku, Shizuoka 422-8526, Japan
| | - Kouichi Yoshinari
- Laboratory of Molecular Toxicology, School of Pharmaceutical Sciences, University of Shizuoka, Suruga-ku, Shizuoka 422-8526, Japan
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Affiliation(s)
- Vladimir A. Lukhtanov
- Department of Karyosystematics, Zoological Institute of Russian Academy of Sciences, St. Petersburg199034, Russia
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Amin OM, Chaudhary A, Sharifdini M, Singh HS. First molecular description of Neorhadinorhynchus nudus (Acanthocephala: Cavisomidae) from fish in the pacific coast of Vietnam, with notes on biogeography. Syst Parasitol 2024; 101:23. [PMID: 38407667 DOI: 10.1007/s11230-023-10139-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Accepted: 12/11/2023] [Indexed: 02/27/2024]
Abstract
Neorhadinorhynchus nudus (Harada, 1938) Yamaguti, 1939 (Cavisomidae) was morphologically described from the frigate tuna Auxis thazard (Lacépède) (Scombridae) in Nha Trang, Pacific south Vietnam. Females of N. nudus were fully described for the first time in the Pacific. Its original inadequate description as Rhadinorhynchus nudus (Harada, 1938) was corrected in material from Fiji Island, the Red Sea and Pacific Vietnam and errors in the text and line drawings of Harada were repeated in subsequent major publications where it underwent considerable nomenclature changes. New descriptive and biogeographical notes are included. We also provided here the molecular characterization of the nuclear gene (18S) and the mitochondrial cytochrome c oxidase subunit 1 (cox1) sequence data of N. nudus. Furthermore, to elucidate the phylogenetic relationship of N. nudus within the family Cavisomidae and with other isolates were performed incorporating nuclear (18S) and mitochondrial (cox1) sequence data using maximum likelihood (ML) and Bayesian inference (BI). The phylogenetic results showed that N. nudus has a relationship with other isolates of the same species and the median-joining network showed the pattern of haplotypes that reflected the structure of the populations.
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Affiliation(s)
- Omar M Amin
- Institute of Parasitic Diseases, 11445 E. Via Linda, # 2-419, Scottsdale, AZ, 85259, USA.
| | - Anshu Chaudhary
- Molecular Taxonomy Laboratory, Department of Zoology, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India
| | - Meysam Sharifdini
- Department of Medical Parasitology and Mycology, School of Medicine, Guilan University of Medical Sciences, Rasht, Iran
| | - Hridaya S Singh
- Molecular Taxonomy Laboratory, Department of Zoology, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India
- Maa Shakumbhari University, Punwarka, Saharanpur, Uttar Pradesh, 247120, India
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Lv H, Gangwisch M, Saha S. Crown die-back of peri-urban forests after combined heatwave and drought was species-specific, size-dependent, and also related to tree neighbourhood characteristics. Sci Total Environ 2024; 913:169716. [PMID: 38159755 DOI: 10.1016/j.scitotenv.2023.169716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 12/17/2023] [Accepted: 12/25/2023] [Indexed: 01/03/2024]
Abstract
The Rhine River valley of Germany has been facing recurrent and intense spells of drought and heatwaves threatening the health of trees in peri-urban forests. Crown damage intensified by climate change accelerates tree mortality, threatening its ecological, economic, and social benefits; however, the pattern of crown die-back in peri-urban forests remained unclear. We performed a field inventory to estimate the crown die-back of 2578 trees of 51 species from 68 randomly selected peri-urban forest plots in Karlsruhe region on the right bank of the Rhine, after the catastrophic summer heatwave and drought of 2018. We related crown die-back to species-specific drought tolerance, wood anatomical traits, tree size, canopy surface temperature, tree density, Shannon's diversity and Gini coefficient for tree height. Regression results indicate that small-size trees were found to be more susceptible to canopy damage than large trees, with a 1-meter increase in tree height associated with a 0.8 % reduction in crown die-back. This size-dependent process is also species-specific. Among the 12 species with significant (p < 0.05) linear relationship between height and die-back, 9 species demonstrated negative correlations and 3 species showed positive relationships. Species tolerant to drought or cavitation (e.g., trees with diffuse porous xylem, 21 species) had significantly lower crown dieback. For example, with a 1-point-scale increase in drought tolerance crown die-back declined 14.35 %. Trees that experienced high canopy surface temperature and grew with high tree density and species diversity (Shannon's diversity) had more crown die-back. However, high structural diversity (Gini coefficient) was related to lower crown die-back. Our results suggested that future research should focus more on tree species-specific hydraulic and thermal traits and tree density and structure management to improve tree health and species selection in peri-urban forests under future climate change.
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Affiliation(s)
- Hailiang Lv
- Heilongjiang Bayi Agricultural University, Xinfeng Road 5, 163316 Daqing, China; Institute for Technology Assessment and Systems Analysis (ITAS), Karlsruhe Institute of Technology, Karlstr. 11, 76133 Karlsruhe, Germany.
| | - Marcel Gangwisch
- Institute of Earth and Environmental Sciences, Faculty of Environment and Natural Resources, University of Freiburg, Werthmannstr. 10, D-79085 Freiburg, Germany
| | - Somidh Saha
- Institute for Technology Assessment and Systems Analysis (ITAS), Karlsruhe Institute of Technology, Karlstr. 11, 76133 Karlsruhe, Germany; Institute of Geography and Geoecology (IfGG), Karlsruhe Institute of Technology (KIT), Kaiserstr. 12, 76131 Karlsruhe, Germany
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Carter O, MacWilliams J, Nachappa P. Development of a real-time PCR assay for detection of hemp russet mite (Aculops cannabicola). Environ Entomol 2024; 53:34-39. [PMID: 37535869 DOI: 10.1093/ee/nvad060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Revised: 06/02/2023] [Accepted: 06/15/2023] [Indexed: 08/05/2023]
Abstract
Of the many arthropod species affecting hemp (Cannabis sativa L.) cultivation in the United States, one species of particular importance is the hemp russet mite (Aculops cannabicola, HRM). Hemp russet mite is a microscopic arthropod which feeds on all parts of hemp plants. Due to its minute size, HRM can proliferate undetected for a long time, complicating management efforts and causing serious economic losses. DNA sequencing and PCR assays can facilitate accurate identification and early detection of HRM in infested-plants. Therefore, a real-time SYBR Green based species-specific PCR assay (quantitative PCR, qPCR) was developed for the identification of HRM DNA by amplification of a 104 bp Internal Transcribed Spacer 1 (ITS1) sequence. The detection limit was estimated to be approximately 48 copies of the HRM marker gene sequence. The real-time-PCR assay is rapid, detects all life stages of mite under 2 hours. A 10-fold serial dilution of the plasmid DNA containing the ITS1 insert were used as standards in the real-time PCR assay. The quantification cycle (Cq) value of the assay showed a strong linear relationship with HRM DNA with R2 of 0.96. The assay was tested against several commonly found hemp pests including two-spotted spider mite and western flower thrips to determine specificity of the assay and to show that no non-target species DNA was amplified. The outcomes of this research will have important applications for agricultural biosecurity through accurate identification of HRM, early detection and timely deployment of management tactics to manage and prevent pest outbreaks.
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Affiliation(s)
- Olivia Carter
- Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Jacob MacWilliams
- Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Punya Nachappa
- Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523, USA
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Balog LE, Ahmed M, Holovachov O. Redescription of three pinworms of the genus Cephalobellus Cobb, 1920 (Nematoda: Oxyuridomorpha: Thelastomatidae) from scarab beetle grubs from Hungary. Syst Parasitol 2024; 101:21. [PMID: 38369578 PMCID: PMC10874908 DOI: 10.1007/s11230-023-10124-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 11/02/2023] [Indexed: 02/20/2024]
Abstract
Larvae of European rose chafer Cetonia aurata (Linnaeus, 1758) and cockchafer Melolontha sp. beetles were collected in Hungary for parasitological study. Intestinal examination revealed the presence of three well-known thelastomatid nematodes belonging to the genus Cephalobellus Cobb, 1920. We report for the first-time Cephalobellus cuspidatum (Rudolphi, 1814) Leibersperger, 1960, C. osmodermae Leibersperger, 1960, and C. potosiae Leibersperger, 1960 in Hungary, all found in scarab beetle larvae. Due to incomplete original descriptions, a comprehensive redescription with detailed morphological data is presented. Additionally, an identification key for closely related Cephalobellus, Thelastoma and Severianoia species infesting scarab beetles worldwide is provided. Newly generated 18S and 28S rDNA gene sequences of C. osmodermae place it as one of the early branches within Thelastomatidae.
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Affiliation(s)
- Luca Eszter Balog
- Doctoral School of Biology, Institute of Biology and Department of Systematic Zoology and Ecology, Eötvös Loránd University, Pázmány Péter sétány 1C, Budapest, 1117, Hungary
| | - Mohammed Ahmed
- Department of Zoology, Swedish Museum of Natural History, Box 50007, 104 05, Stockholm, Sweden
- Department of Evolution, Ecology and Behaviour, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, L69 7AB, UK
| | - Oleksandr Holovachov
- Department of Zoology, Swedish Museum of Natural History, Box 50007, 104 05, Stockholm, Sweden.
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Furusawa H, Waki T. A description of a new species of the genus Brachydistomum (Trematode, Dicrocoeliidae) from the Eurasian Tree Sparrow Passer montanus (Linnaeus) (Passeriformes) in Japan, with a report on the first intermediate host. Syst Parasitol 2024; 101:22. [PMID: 38374415 DOI: 10.1007/s11230-024-10148-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Accepted: 01/02/2024] [Indexed: 02/21/2024]
Abstract
The trematode Brachydistomum suzume n. sp. (Dicrocoeliidae) was detected in the Eurasian Tree Sparrow Passer montanus, and described as a new species in Japan. This new species can be distinguished from the other members of the genus on the basis of morphological characters of suckers and reproductive organs. A partial sequence of adult mitochondrial cytochrome c oxidase subunit 1 (COI) was used as a DNA barcode, and dicrocoeliid sporocysts and cercariae detected from four camaenid land snail species, Bradybaena pellucida, Brad. similaris, Acusta sieboldiana and Euhadra brandtii, were molecularly identified as the new species. Phylogenetic trees of nuclear 28S ribosomal DNA and COI also showed the new species to be distinct from the other trematode species, including Brachydistomum spp.
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Affiliation(s)
- Haruki Furusawa
- Faculty of Science, Toho University, Miyama 2-2-1, Funabashi, Chiba, 274-8510, Japan
| | - Tsukasa Waki
- Faculty of Science, Toho University, Miyama 2-2-1, Funabashi, Chiba, 274-8510, Japan.
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Nguyen HHT, Van Nguyen H, Van Hien H, Chinh NN, Truong VTT, Van Kim V, Hoai TD, Duc PP, Greiman SE, Nguyen HM. Marine fish parasites in the Cat Ba Archipelago, Vietnam: the results of 2010-2023 field surveys. Syst Parasitol 2024; 101:20. [PMID: 38351396 DOI: 10.1007/s11230-023-10145-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Accepted: 12/19/2023] [Indexed: 02/16/2024]
Abstract
Between 2010 and 2023, a longitudinal study was undertaken to uncover the diversity of the parasite fauna of marine fishes in the Cat Ba Archipelago, a world biosphere reserve, in Vietnam. A total of 1,042 specimens representing 80 different fish species were collected and examined. Of these, 68 fish species, represented by 994 specimens (95.39%), were infected with parasites. A total of 162 parasitic species were discovered, including 54 trematodes, 37 monogeneans, 27 crustaceans, 15 myxozoans, 10 acanthocephalans, 10 nematodes, 7 cestodes, and 2 hirudineans. Over the course of the survey, twenty new species were described, including 7 acanthocephalans and 13 trematodes. Additionally, twenty species were recorded for the first time from the Cat Ba Archipelago and twenty-two species had new host records reported. The prevalence and mean intensity of parasite infection were found to be unaffected by season. These data on the parasitic fauna of Cat Ba Archipelago not only expand our knowledge of the diversity of Vietnam, but also provide strong baseline data for measuring future change resulting from environmental perturbations.
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Affiliation(s)
- Hoang-Ha Thi Nguyen
- Institute of Ecology and Biological Resources, Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | - Ha Van Nguyen
- Institute of Ecology and Biological Resources, Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | - Hoang Van Hien
- Institute of Ecology and Biological Resources, Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | - Nguyen Ngoc Chinh
- Institute of Ecology and Biological Resources, Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | | | - Van Van Kim
- Faculty of Fisheries, Vietnam National University of Agriculture, Hanoi, Vietnam
| | - Truong Dinh Hoai
- Faculty of Fisheries, Vietnam National University of Agriculture, Hanoi, Vietnam
| | - Phuc Pham Duc
- Center for Public Health and Ecosystem Research, Hanoi University of Public Health, Hanoi, Vietnam
- Institute of Environmental Health and Sustainable Development, Hanoi, Vietnam
| | | | - Hung Manh Nguyen
- Institute of Ecology and Biological Resources, Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam.
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Velázquez-Brito A, García-Prieto L, Garduño-Montes de Oca U, Sosa-Jiménez VM, Vera-Chávez MC, León-Règagnon V. Serpentirhabdias mexicanus n. sp. (Nematoda: Rhabdiasidae), a parasitic lungworm of the nauyaca viper Bothrops asper (Serpentes: Viperidae) in the Mexican Neotropics. Syst Parasitol 2024; 101:19. [PMID: 38316647 PMCID: PMC10844354 DOI: 10.1007/s11230-023-10144-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 12/18/2023] [Indexed: 02/07/2024]
Abstract
Serpentirhabdias mexicanus n. sp. (Nematoda: Rhabdiasidae) is described from the lung of the nauyaca viper Bothrops asper in Puebla State, central Mexico. This new species is the fifth of the genus described having onchia. Among the species included in this group, the new species is morphologically closest to S. viperidicus and S. atroxi. However, it differs from both species mainly by having only one excretory gland (compared to two present in S. viperidicus and S. atroxi). In addition, S. mexicanus n. sp. can be separated of S. viperidicus by tail length, shape of vulval lips, geographic distribution and host species and from S. atroxi by body length, number of papillae in the cephalic region, as well as the host species and geographic distribution. In the present study, we propose the new species based on morphological, host spectrum and genetic evidence. Phylogenetic analysis indicated Serpentirhabdias as a monophyletic group, with two subgroups that are congruent with the presence/absence of onchia in the esophagostome, host association and other relevant morphological characters.
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Affiliation(s)
- Andrés Velázquez-Brito
- Laboratorio de Helmintología, Instituto de Biología, Universidad Nacional Autónoma de México, Coyoacán, 04510, Mexico, Mexico
| | - Luis García-Prieto
- Laboratorio de Helmintología, Instituto de Biología, Universidad Nacional Autónoma de México, Coyoacán, 04510, Mexico, Mexico
| | - Uriel Garduño-Montes de Oca
- Laboratorio de Helmintología, Instituto de Biología, Universidad Nacional Autónoma de México, Coyoacán, 04510, Mexico, Mexico
- Posgrado en Ciencias Biológicas, Universidad Nacional Autónoma de México, Apartado 70-153, CP 04510, Mexico, Mexico
| | - Víctor Manuel Sosa-Jiménez
- Laboratorio de Helmintología, Instituto de Biología, Universidad Nacional Autónoma de México, Coyoacán, 04510, Mexico, Mexico
- Posgrado en Ciencias Biológicas, Universidad Nacional Autónoma de México, Apartado 70-153, CP 04510, Mexico, Mexico
| | - Mirna Crizel Vera-Chávez
- Laboratorio de Herpetología, Instituto de Biología, Universidad Nacional Autónoma de México, Coyoacán, 04510, Mexico, Mexico
- Posgrado en Ciencias Biológicas, Universidad Nacional Autónoma de México, Apartado 70-153, CP 04510, Mexico, Mexico
| | - Virginia León-Règagnon
- Laboratorio de Helmintología, Instituto de Biología, Universidad Nacional Autónoma de México, Coyoacán, 04510, Mexico, Mexico.
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Bugaut H, El Morr Y, Mestdagh M, Darbois A, Paiva RA, Salou M, Perrin L, Fürstenheim M, du Halgouet A, Bilonda-Mutala L, Le Gac AL, Arnaud M, El Marjou A, Guerin C, Chaiyasitdhi A, Piquet J, Smadja DM, Cieslak A, Ryffel B, Maciulyte V, Turner JM, Bernardeau K, Montagutelli X, Lantz O, Legoux F. A conserved transcriptional program for MAIT cells across mammalian evolution. J Exp Med 2024; 221:e20231487. [PMID: 38117256 PMCID: PMC10733631 DOI: 10.1084/jem.20231487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 10/20/2023] [Accepted: 11/22/2023] [Indexed: 12/21/2023] Open
Abstract
Mucosal-associated invariant T (MAIT) cells harbor evolutionarily conserved TCRs, suggesting important functions. As human and mouse MAIT functional programs appear distinct, the evolutionarily conserved MAIT functional features remain unidentified. Using species-specific tetramers coupled to single-cell RNA sequencing, we characterized MAIT cell development in six species spanning 110 million years of evolution. Cross-species analyses revealed conserved transcriptional events underlying MAIT cell maturation, marked by ZBTB16 induction in all species. MAIT cells in human, sheep, cattle, and opossum acquired a shared type-1/17 transcriptional program, reflecting ancestral features. This program was also acquired by human iNKT cells, indicating common differentiation for innate-like T cells. Distinct type-1 and type-17 MAIT subsets developed in rodents, including pet mice and genetically diverse mouse strains. However, MAIT cells further matured in mouse intestines to acquire a remarkably conserved program characterized by concomitant expression of type-1, type-17, cytotoxicity, and tissue-repair genes. Altogether, the study provides a unifying view of the transcriptional features of innate-like T cells across evolution.
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Affiliation(s)
- Hélène Bugaut
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
| | - Yara El Morr
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
| | - Martin Mestdagh
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
| | - Aurélie Darbois
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
| | - Rafael A. Paiva
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
| | - Marion Salou
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
| | - Laetitia Perrin
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
| | - Mariela Fürstenheim
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
- Université Paris Cité, Paris, France
| | - Anastasia du Halgouet
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
| | - Linda Bilonda-Mutala
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
| | - Anne-Laure Le Gac
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
| | - Manon Arnaud
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
| | | | - Coralie Guerin
- Cytometry Platform, CurieCoreTech, Institut Curie, Paris, France
- Innovative Therapies in Haemostasis, Institut National de La Santé et de La Recherche Médicale, Université de Paris, Paris, France
| | - Atitheb Chaiyasitdhi
- Laboratoire Physico-Chimie Curie, Institut Curie, Paris Sciences et Lettres Research University, Centre national de la recherche scientifique UMR168, Paris, France
- Sorbonne Université, Paris, France
| | - Julie Piquet
- Biosurgical Research Laboratory, Carpentier Foundation, Paris, France
| | - David M. Smadja
- Innovative Therapies in Haemostasis, Institut National de La Santé et de La Recherche Médicale, Université de Paris, Paris, France
- Hematology Department and Biosurgical Research Lab (Carpentier Foundation), Assistance Publique Hôpitaux de Paris-Centre-Université de Paris, Paris, France
| | - Agata Cieslak
- Université de Paris (Descartes), Institut Necker-Enfants Malades, Institut National de La Santé et de La Recherche Médicale U1151, and Laboratory of Onco-Hematology, Assistance Publique-Hôpitaux de Paris, Hôpital Necker-Enfants Malades, Paris, France
| | - Bernhard Ryffel
- Université D’Orléans, Centre national de la recherche scientifique UMR7355, Orléans, France
| | - Valdone Maciulyte
- Sex Chromosome Biology Laboratory, The Francis Crick Institute, London, UK
| | - James M.A. Turner
- Sex Chromosome Biology Laboratory, The Francis Crick Institute, London, UK
| | - Karine Bernardeau
- Nantes Université, Centre hospitalier universitaire de Nantes, Centre national de la recherche scientifique, Institut National de La Santé et de La Recherche Médicale, BioCore, US16, Plateforme P2R, Structure Fédérative de Recherche François Bonamy, Nantes, France
| | - Xavier Montagutelli
- Mouse Genetics Laboratory, Institut Pasteur, Université Paris Cité, Paris, France
| | - Olivier Lantz
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
- Laboratoire D’immunologie Clinique, Institut Curie, Paris, France
- Centre D’investigation Clinique en Biothérapie Gustave-Roussy Institut Curie, Paris, France
| | - François Legoux
- Institut Curie, Paris Sciences et Lettres University, Institut National de La Santé et de La Recherche Médicale U932, Immunity and Cancer, Paris, France
- Institut de Génétique et Développement de Rennes, Université de Rennes, Institut National de La Santé et de La Recherche Médicale ERL1305, Centre national de la recherche scientifique UMR6290, Rennes, France
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Conde MLG, Piedade MTF, Wittmann F, Nascimento RGM, Schöngart J. Evaluation of the management potential of timber resources in clearwater floodplain forests in the Amazon using growth models. J Environ Manage 2024; 351:119781. [PMID: 38113792 DOI: 10.1016/j.jenvman.2023.119781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 11/18/2023] [Accepted: 12/03/2023] [Indexed: 12/21/2023]
Abstract
The Amazonian clearwater igapós are poorly studied floodplain ecosystems that are mainly covered by forests and are undergoing massive threats due to changes in land use and climate. Their hydrochemical characteristics and edaphic conditions fall between those of the eutrophic várzea floodplains on whitewater rivers and those of the oligotrophic igapós on blackwater rivers. Previous studies have indicated the management potential of timber species in the highly dynamic várzea floodplains due to the fast tree growth and high forest productivity. Timber resource management, however, is not recommended for the blackwater ecosystem because of its slow dynamics and high vulnerability to disturbances. For clearwater igapós, information on the potential for sustainable management of timber resources is lacking. In this study, we modeled the growth in diameter, height, and volume to derive species-specific minimum logging diameters (MLD) and felling cycles (FC) for eight merchantable species in the clearwater igapós of the Branco and Tapajós rivers in the northern and southern Amazon Basin, respectively. Diameter growth was modeled by analyzing the tree rings that are annually formed in the Amazonian floodplains as a consequence of the regular and predicable long-term flooding. Growth modeling followed the guidelines of the Growth-Oriented Logging (GOL) concept, with the adjustment of diameter growth improved by applying nonlinear mixed-effects regression. MLDs varied from 36 to 90 cm and FCs ranged from 6 to 21 years, which diverges from the standards of Brazilian logging regulations (MLD: 50 cm; FC: 25-35 years). This indicates the potential for timber resource management, which should be tested and introduced at small scales, integrated in protected areas to stepwise promote the sustainable management of these natural resources by traditional communities to increase their income and the conservation of this ecosystem.
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Affiliation(s)
- Maíra Luciana Guimarães Conde
- Postgraduate Program in Tropical Forest Science, National Institute of Amazon Research (INPA), Manaus, Amazonas, Brazil; Ecology, Monitoring and Sustainable Use of Wetlands Research Group (MAUA), National Institute of Amazon Research (INPA), Manaus, Amazonas, Brazil.
| | - Maria Teresa Fernandez Piedade
- Ecology, Monitoring and Sustainable Use of Wetlands Research Group (MAUA), National Institute of Amazon Research (INPA), Manaus, Amazonas, Brazil.
| | - Florian Wittmann
- Ecology, Monitoring and Sustainable Use of Wetlands Research Group (MAUA), National Institute of Amazon Research (INPA), Manaus, Amazonas, Brazil; Department of Wetland Ecology, Institute of Geography and Geoecology, Karlsruhe Institute of Technology (KIT), Rastatt, Germany.
| | | | - Jochen Schöngart
- Postgraduate Program in Tropical Forest Science, National Institute of Amazon Research (INPA), Manaus, Amazonas, Brazil; Ecology, Monitoring and Sustainable Use of Wetlands Research Group (MAUA), National Institute of Amazon Research (INPA), Manaus, Amazonas, Brazil.
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Moran BM, Payne CY, Powell DL, Iverson ENK, Donny AE, Banerjee SM, Langdon QK, Gunn TR, Rodriguez-Soto RA, Madero A, Baczenas JJ, Kleczko KM, Liu F, Matney R, Singhal K, Leib RD, Hernandez-Perez O, Corbett-Detig R, Frydman J, Gifford C, Schartl M, Havird JC, Schumer M. A lethal mitonuclear incompatibility in complex I of natural hybrids. Nature 2024; 626:119-127. [PMID: 38200310 PMCID: PMC10830419 DOI: 10.1038/s41586-023-06895-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Accepted: 11/23/2023] [Indexed: 01/12/2024]
Abstract
The evolution of reproductive barriers is the first step in the formation of new species and can help us understand the diversification of life on Earth. These reproductive barriers often take the form of hybrid incompatibilities, in which alleles derived from two different species no longer interact properly in hybrids1-3. Theory predicts that hybrid incompatibilities may be more likely to arise at rapidly evolving genes4-6 and that incompatibilities involving multiple genes should be common7,8, but there has been sparse empirical data to evaluate these predictions. Here we describe a mitonuclear incompatibility involving three genes whose protein products are in physical contact within respiratory complex I of naturally hybridizing swordtail fish species. Individuals homozygous for mismatched protein combinations do not complete embryonic development or die as juveniles, whereas those heterozygous for the incompatibility have reduced complex I function and unbalanced representation of parental alleles in the mitochondrial proteome. We find that the effects of different genetic interactions on survival are non-additive, highlighting subtle complexity in the genetic architecture of hybrid incompatibilities. Finally, we document the evolutionary history of the genes involved, showing signals of accelerated evolution and evidence that an incompatibility has been transferred between species via hybridization.
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Affiliation(s)
- Benjamin M Moran
- Department of Biology, Stanford University, Stanford, CA, USA.
- Centro de Investigaciones Científicas de las Huastecas 'Aguazarca', A.C., Calnali, Hidalgo, Mexico.
| | - Cheyenne Y Payne
- Department of Biology, Stanford University, Stanford, CA, USA
- Centro de Investigaciones Científicas de las Huastecas 'Aguazarca', A.C., Calnali, Hidalgo, Mexico
| | - Daniel L Powell
- Department of Biology, Stanford University, Stanford, CA, USA
- Centro de Investigaciones Científicas de las Huastecas 'Aguazarca', A.C., Calnali, Hidalgo, Mexico
| | - Erik N K Iverson
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA
| | | | | | - Quinn K Langdon
- Department of Biology, Stanford University, Stanford, CA, USA
| | - Theresa R Gunn
- Department of Biology, Stanford University, Stanford, CA, USA
| | | | - Angel Madero
- Department of Biology, Stanford University, Stanford, CA, USA
| | - John J Baczenas
- Department of Biology, Stanford University, Stanford, CA, USA
| | | | - Fang Liu
- Stanford University Mass Spectrometry Core, Stanford University, Stanford, CA, USA
| | - Rowan Matney
- Stanford University Mass Spectrometry Core, Stanford University, Stanford, CA, USA
| | - Kratika Singhal
- Stanford University Mass Spectrometry Core, Stanford University, Stanford, CA, USA
| | - Ryan D Leib
- Stanford University Mass Spectrometry Core, Stanford University, Stanford, CA, USA
| | - Osvaldo Hernandez-Perez
- Centro de Investigaciones Científicas de las Huastecas 'Aguazarca', A.C., Calnali, Hidalgo, Mexico
| | - Russell Corbett-Detig
- Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA
- Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA
| | - Judith Frydman
- Department of Biology, Stanford University, Stanford, CA, USA
- Department of Genetics, Stanford University, Stanford, CA, USA
| | - Casey Gifford
- Department of Genetics, Stanford University, Stanford, CA, USA
- Department of Pediatrics, Stanford University, Stanford, CA, USA
- Institute for Stem Cell Biology and Regenerative Medicine, Stanford University, Stanford, CA, USA
| | - Manfred Schartl
- The Xiphophorus Genetic Stock Center, Texas State University, San Marcos, TX, USA
- Developmental Biochemistry, Biozentrum, University of Würzburg, Würzburg, Germany
| | - Justin C Havird
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA
| | - Molly Schumer
- Department of Biology, Stanford University, Stanford, CA, USA.
- Centro de Investigaciones Científicas de las Huastecas 'Aguazarca', A.C., Calnali, Hidalgo, Mexico.
- Howard Hughes Medical Institute, Stanford, CA, USA.
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49
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Hendrix SS. Mary Beverley-Burton, PH.D., 10 JUNE 1930-25 FEBRUARY 2023. J Parasitol 2024; 110:17-18. [PMID: 38301719 DOI: 10.1645/23-113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2024] Open
Affiliation(s)
- Sherman S Hendrix
- , Professor Emeritus, Department of Biology, Gettysburg College, Gettysburg, Pennsylvania 17325
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Rog I, Hilman B, Fox H, Yalin D, Qubaja R, Klein T. Increased belowground tree carbon allocation in a mature mixed forest in a dry versus a wet year. Glob Chang Biol 2024; 30:e17172. [PMID: 38343030 DOI: 10.1111/gcb.17172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Revised: 01/07/2024] [Accepted: 01/08/2024] [Indexed: 02/15/2024]
Abstract
Tree species differ in their carbon (C) allocation strategies during environmental change. Disentangling species-specific strategies and contribution to the C balance of mixed forests requires observations at the individual tree level. We measured a complete set of C pools and fluxes at the tree level in five tree species, conifers and broadleaves, co-existing in a mature evergreen mixed Mediterranean forest. Our study period included a drought year followed by an above-average wet year, offering an opportunity to test the effect of water availability on tree C allocation. We found that in comparison to the wet year, C uptake was lower in the dry year, C use was the same, and allocation to belowground sinks was higher. Among the five major C sinks, respiration was the largest (ca. 60%), while root exudation (ca. 10%) and reproduction (ca. 2%) were those that increased the most in the dry year. Most trees relied on stored starch for maintaining a stable soluble sugars balance, but no significant differences were detected in aboveground storage between dry and wet years. The detailed tree-level analysis of nonstructural carbohydrates and δ13 C dynamics suggest interspecific differences in C allocation among fluxes and tissues, specifically in response to the varying water availability. Overall, our findings shed light on mixed forest physiological responses to drought, an increasing phenomenon under the ongoing climate change.
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Affiliation(s)
- Ido Rog
- Department of Plant & Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Boaz Hilman
- Department of Biogeochemical Processes, Max-Planck Institute for Biogeochemistry, Jena, Germany
- The Institute of Earth Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Hagar Fox
- Department of Plant & Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - David Yalin
- Department of Earth and Planetary Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Rafat Qubaja
- Department of Earth and Planetary Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Tamir Klein
- Department of Plant & Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
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