Including different groups of genotyped females for genomic prediction in a Nordic Jersey population

Including genotyped females in a reference population (RP) is an obvious way to increase the RP in genomic selection, especially for dairy breeds of limited population size. However, the incorporation of these females must be conducted cautiously because of the potential preferential treatment of the genotyped cows and lower reliabilities of phenotypes compared with the proven pseudo-phenotypes of bulls. Breeding organizations in Denmark, Finland, and Sweden have implemented a female-genotyping project with the possibility of genotyping entire herds using the low-density (LD) chip. In the present study, 5 scenarios for building an RP were investigated in the Nordic Jersey population: (1) bulls only, (2) bulls with females from the LD project, (3) bulls with females from the LD project plus non-LD project females genotyped before their first calving, (4) bulls with females from the LD project plus non-LD project females genotyped after their first calving, and (5) bulls with all genotyped females. The genomically enhanced breeding value (GEBV) was predicted for 8 traits in the Nordic total merit index through a genomic BLUP model using deregressed proof (DRP) as the response variable in all scenarios. In addition, (daughter) yield deviation and raw phenotypic data were studied as response variables for comparison with the DRP, using stature as a model trait. The validation population was formed using a cut-off birth year of 2005 based on the genotyped Nordic Jersey bulls with DRP. The average increment in reliability of the GEBV across the 8 traits investigated was 1.9 to 4.5 percentage points compared with using only bulls in the RP (scenario 1). The addition of all the genotyped females to the RP resulted in the highest gain in reliability (scenario 5), followed by scenario 3, scenario 2, and scenario 4. All scenarios led to inflated GEBV because the regression coefficients are less than 1. However, scenario 2 and scenario 3 led to less bias of genomic predictions than scenario 5, with regression coefficients showing less deviation from scenario 1. For the study on stature, the daughter yield deviation/daughter yield deviation performed slightly better than the DRP as the response variable in the genomic BLUP (GBLUP) model. Therefore, adding unselected females in the RP could significantly improve the reliabilities and tended to reduce the prediction bias compared with adding selectively genotyped females. Although the DRP has performed robustly so far, the use of raw data is recommended with a single-step model as an optimal solution for future genomic evaluations.

Impaired atrial natriuretic peptide-mediated lipolysis in obesity

BACKGROUND

Catecholamines and natriuretic peptides (NPs) are the only hormones with pronounced lipolytic effects in human white adipose tissue. Although catecholamine-induced lipolysis is well known to be impaired in obesity and insulin resistance, it is not known whether the effect of NPs is also altered.

METHODS

Catecholamine- and atrial NP (ANP)-induced lipolysis was investigated in abdominal subcutaneous adipocytes in vitro and in situ by microdialysis.

RESULTS

In a cohort of 122 women, both catecholamine- and ANP-induced lipolysis in vitro was markedly attenuated in obesity (n=87), but normalized after substantial body weight loss (n=52). The impairment of lipolysis differed between the two hormones when expressing lipolysis per lipid weight, the ratio of stimulated over basal (spontaneous) lipolysis rate or per number of adipocytes. Thus, while the response to catecholamines was lower when expressed as the former two measures, it was higher when expressed per cell number, a consequence of the significantly larger fat cell size in obesity. In contrast, although ANP-induced lipolysis was also attenuated when expressed per lipid weight or the ratio stimulated/basal, it was similar between non-obese and obese subjects when expressed per cell number suggesting that the lipolytic effect of ANP may be even more sensitive to the effects of obesity than catecholamines. Obesity was characterized by a decrease in the protein expression of the signaling NP A receptor (NPRA) and a trend toward increased levels of the clearance receptor NPRC. The impairment in ANP-induced lipolysis observed in vitro was corroborated by microdialysis experiments in situ in a smaller cohort of lean and overweight men.

CONCLUSIONS

ANP- and catecholamine-induced lipolysis is reversibly attenuated in obesity. The pro-lipolytic effects of ANP are relatively more impaired compared with that of catecholamines, which may in part be due to specific changes in NP receptor expression.

Measurement of the Target-Normal Single-Spin Asymmetry in Quasielastic Scattering from the Reaction (3)He(↑)(e,e')

We report the first measurement of the target single-spin asymmetry, A(y), in quasielastic scattering from the inclusive reaction (3)He(↑)(e,e') on a (3)He gas target polarized normal to the lepton scattering plane. Assuming time-reversal invariance, this asymmetry is strictly zero for one-photon exchange. A nonzero A(y) can arise from the interference between the one- and two-photon exchange processes which is sensitive to the details of the substructure of the nucleon. An experiment recently completed at Jefferson Lab yielded asymmetries with high statistical precision at Q(2)=0.13, 0.46, and 0.97  GeV(2). These measurements demonstrate, for the first time, that the (3)He asymmetry is clearly nonzero and negative at the 4σ-9σ level. Using measured proton-to-(3)He cross-section ratios and the effective polarization approximation, neutron asymmetries of -(1-3)% were obtained. The neutron asymmetry at high Q(2) is related to moments of the generalized parton distributions (GPDs). Our measured neutron asymmetry at Q(2)=0.97  GeV(2) agrees well with a prediction based on two-photon exchange using a GPD model and thus provides a new, independent constraint on these distributions.

Cyclic Deformation in Metallic Glasses

Despite the utmost importance and decades of experimental studies on fatigue in metallic glasses (MGs), there has been so far little or no atomic-level understanding of the mechanisms involved. Here we perform molecular dynamics simulations of tension-compression fatigue in Cu50Zr50 MGs under strain-controlled cyclic loading. It is shown that the shear band (SB) initiation under cyclic loading is distinctly different from that under monotonic loading. Under cyclic loading, SB initiation takes place when aggregates of shear transformation zones (STZs) accumulating at the MG surface reach a critical size comparable to the SB width, and the accumulation of STZs follows a power law with rate depending on the applied strain. It is further shown that almost the entire fatigue life of nanoscale MGs under low cycle fatigue is spent in the SB-initiation stage, similar to that of crystalline materials. Furthermore, a qualitative investigation of the effect of cycling frequency on the fatigue behavior of MGs suggests that higher cycling frequency leads to more cycles to failure. The present study sheds light on the fundamental fatigue mechanisms of MGs that could be useful in developing strategies for their engineering applications.

Copy number variations of HLA-I and activation of NKp30 pathway determine the sensitivity of gastric cancer cells to the cytotoxicity of natural killer cells

Nude mice are important in vivo model for characterization of cell malignancy behavior; however, many cancer cells fail to form tumors in it. Understanding this defective mechanism may provide novel insights into tumorigenesis and how tumor cells escape innate immunity. Whole-genome sequencing was conducted on two gastric cancer (GC) cells, BGC823 and AGS, which do and do not form tumors in nude mice, to identify their genomic differences relevant to natural killer (NK) cells. We found that the tumorigenic capacity of human GC cell lines was dependent on the recruitment and activation of NK cells in xenograft tumors. We used whole-genome sequence (WGS) on GC cell lines to identify potential genes controlling susceptibility to NK-mediated killing. The tumorigenic cell line BGC823 expressed high levels of HLA-I because of copy gain and was resistant to NK cell killing. In contrast, another cell line AGS expressing low levels of HLA-I with activated NKp30/MAPK/IL-12 (interleukin-12) or IL-2 (interleukin-2) pathway was susceptible to NK lysis. Treatment of tumor bearing mice with systemic administration of IL-12 in combination with intratumor injection of anti-HLA-I antibody significantly increased NK cell recruitment into xenograft tumors, which became sensitive to NK killing, resulting in reduced tumor progression. In human GC specimens, decreased HLA-I expression and increased NK cells surrounding tumor cells were correlated with decreased metastasis potential and better prognosis of patients. Our results provide a mechanistic basis for GC cells to escape NK lysis and a promising prospect of NK immunotherapy for GC cells.

General anaesthesia is better suitable than epidural anaesthesia for surgical removal of giant intraperitoneal tumours

OBJECTIVE

Our objective was to compare general and epidural anaesthesia for surgical resection of giant intraperitoneal tumours.

PATIENTS AND METHODS

80 patients with giant intraperitoneal tumours were randomly divided into two groups which respectively received general or epidural anaesthesia prior to the surgery. General anaesthesia was done under intubation and mechanical ventilation.

RESULTS

Vital signs, including diastolic pressure, systolic pressure, heart rate and oxygen saturation, were not significantly different between two groups before the surgery. Vital signs were decreased in patients of both groups after surgery. However, vital signs in the general anaesthesia group were markedly higher than in the epidural anaesthesia group (p < 0.05), indicating that the changes of vital signs were less pronounced in the general anaesthesia group. Furthermore, the operation time in this group was markedly shorter than in the epidural anaesthesia group, while the success rate was markedly higher. In addition, the intraoperative blood loss and infusion volume were both markedly lower in the general anaesthesia group, as well as the occurrence rate of supine position (p < 0.05 for all comparisons). Occurrence of heart failure, lung edema, altered water-electrolyte balance, ECG abnormalities in patients undergoing surgery under general anaesthesia group was significantly lower (p < 0.05 vs. patients under epidural anaesthesia). There were no deaths in either patient group, and all patients were successfully cured and discharged.

CONCLUSIONS

General anaesthesia under intubation and mechanical ventilation is better suited for surgical removal of giant intraperitoneal tumours.

Survival in stage I-III breast cancer patients by surgical treatment in a publicly funded health care system

BACKGROUND

Recent investigations of breast cancer survival in the United States suggest that patients who receive mastectomy have poorer survival than those who receive breast-conserving surgery (BCS) plus radiotherapy, despite clinically established equivalence. This study investigates breast cancer survival in the publicly funded health care system present in Alberta, Canada.

PATIENTS AND METHODS

Surgically treated stage I-III breast cancer cases diagnosed in Alberta from 2002 to 2010 were included. Demographic, treatment and mortality information were collected from the Alberta Cancer Registry. Unadjusted overall and breast cancer-specific mortality was assessed using Kaplan-Meier and cumulative incidence curves, respectively. Cox proportional hazards models were used to calculate stage-specific mortality hazard estimates associated with surgical treatment received.

RESULTS

A total of 14 939 cases of breast cancer (14 633 patients) were included in this study. The unadjusted 5-year all-cause survival probabilities for patients treated with BCS plus radiotherapy, mastectomy, and BCS alone were 94% (95% CI 93% to 95%), 83% (95% CI 82% to 84%) and 74% (95% CI 70% to 78%), respectively. Stage II and III patients who received mastectomy had a higher all-cause (stage II HR = 1.36, 95% CI 1.13-1.48; stage III HR = 1.74, 95% CI 1.24-2.45) and breast cancer-specific (stage II HR = 1.39, 95% CI 1.09-1.76; stage III HR = 1.79, 95% CI 1.21-2.65) mortality hazard compared with those who received BCS plus radiotherapy, adjusting for patient and clinical characteristics. BCS alone was consistently associated with poor survival.

CONCLUSIONS

Stage II and III breast cancer patients diagnosed in Alberta, Canada, who received mastectomy had a significantly higher all-cause and breast cancer-specific mortality hazard compared with those who received BCS plus radiotherapy. We suggest greater efforts toward educating and encouraging patients to receive BCS plus radiotherapy rather than mastectomy when it is medically feasible and appropriate.

Ionic liquids for energy, materials, and medicine

As highlighted by the recent ChemComm web themed issue on ionic liquids, this field continues to develop beyond the concept of interesting new solvents for application in the greening of the chemical industry. Here some current research trends in the field will be discussed which show that ionic liquids research is still aimed squarely at solving major societal issues by taking advantage of new fundamental understanding of the nature of these salts in their low temperature liquid state. This article discusses current research trends in applications of ionic liquids to energy, materials, and medicines to provide some insight into the directions, motivations, challenges, and successes being achieved with ionic liquids today.