Clinical application of low-dose phase contrast breast CT: methods for the optimization of the reconstruction workflow

Results are presented of a feasibility study of three-dimensional X-ray tomographic mammography utilising in-line phase contrast. Experiments were performed at SYRMEP beamline of Elettra synchrotron. A specially designed plastic phantom and a mastectomy sample containing a malignant lesion were used to study the reconstructed image quality as a function of different image processing operations. Detailed evaluation and optimization of image reconstruction workflows have been carried out using combinations of several advanced computed tomography algorithms with different pre-processing and post-processing steps. Special attention was paid to the effect of phase retrieval on the diagnostic value of the reconstructed images. A number of objective image quality indices have been applied for quantitative evaluation of the results, and these were compared with subjective assessments of the same images by three experienced radiologists and one pathologist. The outcomes of this study provide practical guidelines for the optimization of image processing workflows in synchrotron-based phase-contrast mammo-tomography.

Osteogenic potential of dualblocks cultured with human periodontal ligament stem cells: in vitro and synchrotron microtomography study

BACKGROUND AND OBJECTIVE

In the present study, the early stages of in vitro bone formation in collagenated porcine scaffolds cultured with human periodontal ligament cells were investigated. The comparison between the osteogenic potential of this structure in basal and differentiating culture media was explored to predict the mechanism of its biological behavior as graft in human defect. Results were validated by synchrotron radiation X-Ray phase contrast computed microtomography (micro-CT). As the periodontal disease plays a key role in systemic and oral diseases, it is crucial to find advanced therapeutic clinical interventions to repair periodontal defects. This has been recently explored using cells and tissues developed in vitro that should ideally be immunologically, functionally, structurally and mechanically identical to the native tissue.

MATERIAL AND METHODS

In vitro cultures of human periodontal ligament cells, easily obtained by scraping of alveolar crestal and horizontal fibers of the periodontal ligament, were seeded on to collagenated porcine blocks constituted by natural cancellous and cortical bone. 3D images were obtained by synchrotron radiation micro-CT and processed with a phase-retrieval algorithm based on the transport of intensity equation.

RESULTS

Starting from the second week of culture, newly formed mineralized bone was detected in all the scaffolds, both in basal and differentiating media. Bone mineralization was proved to occur preferentially in the trabecular portion and in differentiating media.

CONCLUSION

The chosen method, supported by phase contrast micro-CT analysis, successfully and quantitatively monitored the early stages of bone formation and the rate of the bioscaffold resorption in basal and differentiating culture media.

First fatal cerebral phaeohyphomycosis due to Rhinocladiella mackenziei in Iran, based on ITS rDNA

Black yeast-like fungi and relatives as agents of cerebral phaeohyphomycosis are often encountered in human fatal brain abscesses and lead to almost 100% mortality despite the application of antifungal and surgical therapy. We report to our knowledge the first case of brain infection due to Rhinocladiella mackenziei in a 54-year-old immunocompetent male in Iran where R. mackenziei has not been reported previously. The initial diagnosis was brain fungal infection because of pigmented, irregular, branched, septated hyphae based on histopathological staining. The patient was treated with intravenous amphotericin B deoxycholate (0.5mg/kg/day) combined with oral itraconazole (200mg twice daily), nevertheless, his neurological function deteriorated rapidly and ultimately the patient died due to respiratory failure later two weeks. R. mackenziei was identified based on the sequencing of internal transcribed spacer (ITS rDNA region) (KJ140287). Therefore, considerable attention for this life-threatening infection is highly recommended.

Adaptive smoothing of multi-shell diffusion weighted magnetic resonance data by msPOAS

We present a novel multi-shell position-orientation adaptive smoothing (msPOAS) method for diffusion weighted magnetic resonance data. Smoothing in voxel and diffusion gradient space is embedded in an iterative adaptive multiscale approach. The adaptive character avoids blurring of the inherent structures and preserves discontinuities. The simultaneous treatment of all q-shells improves the stability compared to single-shell approaches such as the original POAS method. The msPOAS implementation simplifies and speeds up calculations, compared to POAS, facilitating its practical application. Simulations and heuristics support the face validity of the technique and its rigorousness. The characteristics of msPOAS were evaluated on single and multi-shell diffusion data of the human brain. Significant reduction in noise while preserving the fine structure was demonstrated for diffusion weighted images, standard DTI analysis and advanced diffusion models such as NODDI. MsPOAS effectively improves the poor signal-to-noise ratio in highly diffusion weighted multi-shell diffusion data, which is required by recent advanced diffusion micro-structure models. We demonstrate the superiority of the new method compared to other advanced denoising methods.

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Method for structure preserving smoothing multi-shell dMRI data

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Does not rely on any dMRI diffusion model

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Outperforms naive single-shell POAS and other approaches

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Feasible for real data application

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Implemented within a freely available package dti for the R Language

Family screening for a novel ATP7B gene mutation, c.2335T>G, in the South of Iran

BACKGROUND

Wilson disease (WD) is a rare autosomal recessive disorder, which leads to copper metabolism, due to mutations in ATP7B gene. The gene responsible for WD consists of 21 exons that span a genomic region of about 80 kb and encodes a copper transporting P-type ATPase (ATP7B), a protein consisting of 1465 amino acids. Identifying mutation in ATP7B gene is important to find carrier individuals for proper counseling. A novel mutation in exon 8 of ATP7B gene, c.2335T>G (p.Trp779Gly), with severe neuropsychiatric condition in the South of Iran, was recently identified. The aim of this study was to screen 120 individuals from a large family using a simple amplification refractory mutation system PCR (ARMS-PCR) for carrier screening in the South of Iran.

MATERIALS AND METHODS

120 individuals from family relatives of an index case in the Nasr Abad, south of Iran, were studied for screening of the c.2335T>G mutation. One patient with homozygous mutation and one homozygous normal individual were used as controls in this experiment.

RESULTS

Altogether, 16 out of 120 (13.3%) individuals within this region had heterozygous mutation. One individual with homozygote mutation was also identified.

CONCLUSION

Identification of carriers in families with affected individuals is of great importance for counseling before marriage. The results of this study can be used for further counseling programs in this population.

Distribution of extended spectrum beta-lactamase resistance genes among nosocomial imipenem resistant A. Baumannii strains harboring BLAoxa-23 carbapenemases isolated from Ilam and Tehran

Antimicrobial susceptibility and ESBLs genes of 42 imipenem resistant A. baumannii carried out by DDST and PCR. The most antimicrobial agents against A. baumannii strains, harboring blaOXA-23-like carbapenemases, were meropenem (33.4 percent), piperacillin-tazobactam (23.9 percent), ceftazidime (14.3 percent) and gatifoxacin (19.1 percent), respectively. All the 42 isolates harbored the blaTEM gene, but the bla SHV and VEB genes were not present among all the isolates. With the exception of seven isolates, all the A. baumannii strains harbor blaTEM showed ESBL positivity in DDST. The result of this study show that resistance against antimicrobial agents, especially carbapenems, has increased and that blaTEM harboring A. baumannii strains can be help the blaOXA-like carbapenemase genes to code for resistance against carbapenem antibiotics.

Electromechanical resonator based on electrostatically actuated graphene-doped PVP nanofibers

In this paper we present experimental results describing electrical readout of the mechanical vibratory response of graphene-doped fibers by employing electrical actuation. For a fiber resonator with an approximate radius of 850 nm and length of 100 μm, we observed a resonance frequency around 580 kHz with a quality factor (Q) of about 2511 in air at ambient conditions. Through the use of finite element simulations, we show that the reported frequency of resonance is relevant. We also show that the resonance frequency of the fiber resonators decreases as the bias potential is increased due to the electrostatic spring-softening effect.

Occurrence of low density of Leishmania infantum in sandflies from a new focus of visceral leishmaniasis in northwest of Iran

BACKGROUND & OBJECTIVES

Observations and case studies have shown that the number of Visceral Leishmaniasis (VL) cases have increased in the recent years in several areas of Iran including Sarab district, East Azerbaijan province. Sarab district has been considered as a new focus of VL in Iran. The density of the sandfly vector and the Leishmania parasites causing infection has been assessed in 2009.

METHODS

Sandfly species had been collected from Sarab district, East Azerbaijan province in 2009 using sticky papers and CDC traps. DNA of sandflies was extracted and nested PCR was amplified in a region of the ribosomal RNA amplicon of Leishmania (ITS1-5.8S rRNA gene), which was shown to be species-specific by DNA sequence.

RESULTS

Altogether, 1317 male and female sandflies were trapped. At least 10 different sandfly species were identified morphologically. Leishmania infantum was the only Leishmania that was detected among the sandfly's population in Sarab district. All the infectious cases (4/223) found in the abundant sandfly region were Phlebotomus kandelakii.

CONCLUSION

The diversity of sandflies was similar to those in the main VL focal points in Iran, but the diversity of parasite and density were significantly lower. The low prevalence of VL in Sarab district might be explained by the scarcity of infected domestic dogs Canis familiaris the primary reservoir host of VL in the region. By finding the L. infantum in P. kandelakii for the first time on this new focus, we are able to conclude that P. kandelakii might be the vector of L. infantum. In future, more works should be done to test status of P. kandelakii as a proven vector of L. infantum.