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Ge S, Wang X, Randeniya K, Mohan R. TU-EF-304-01: BEST IN PHYSICS (THERAPY): Plan Robustness and Optimality Improvement with 4-Dimensional Robust Optimization for Lung Cancer Patients. Med Phys 2015. [DOI: 10.1118/1.4925647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Ge S, Agbakpe M, Zhang W, Kuang L. Heteroaggregation between PEI-coated magnetic nanoparticles and algae: effect of particle size on algal harvesting efficiency. ACS APPLIED MATERIALS & INTERFACES 2015; 7:6102-6108. [PMID: 25738208 DOI: 10.1021/acsami.5b00572] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Colloidal interactions between magnetic nanoparticles (NPs) and algal cells are of paramount significance to magnetophoretic separation of algal biomass from water. This study evaluated the size effect of magnetic NPs (MNPs) coated with polyethylenimine (PEI) on the separation efficiency of Scenedesmus dimorphus as well as on the recovery efficiency of MNPs from algal biomass. Results showed that algal harvesting efficiency (HE) increased from ca. 60% to 85% as the diameter of PEI-coated MNPs increased from 9 to 53 nm. Likewise, algal recovery capacity (algae/MNPs, w/w) also showed the same size dependence. But a large size (247 nm) led to a decline of algal HE, which was correctly interpreted by a settling model that predicts large sizes of MNPs could eventually reduce the settling velocity under magnetophoresis. The extended Derjaguin-Landau-Verwey-Overbeek theory revealed that the particle size and PEI coating both influenced the interaction energies (e.g., energy barrier) between MNPs and algae. Particularly, PEI coating significantly reduced the energy barrier between MNPs and algae and thereby increased their heteroaggregation and algal HE. Moreover, PEI-coated MNPs were recovered from the harvested algae biomass through a chemical-free ultrasonic method, and the recovery efficiency appeared to be higher for larger MNPs. Overall, the synthesized sizes of applied MNPs will not only affect algal HE but also have economic implications on magnetophoretic algal separation technologies.
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Li S, Ge S, Yang P. Expression of cytokeratins in enamel organ, junctional epithelium and epithelial cell rests of Malassez. J Periodontal Res 2015; 50:846-54. [PMID: 25808290 DOI: 10.1111/jre.12272] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/20/2015] [Indexed: 11/28/2022]
Abstract
BACKGROUND AND OBJECTIVE After tooth formation is complete, it is suggested that continuity exists between the epithelial cell rests of Malassez (ERM), reduced enamel epithelium (REE) and subsequently the junctional epithelium. However, the junctional epithelium was reported to differ from REE and ERM. The developmental relationships between and among them remain controversial. Therefore, in the present study we examined the expression of cytokeratins in the three types of epithelia to investigate the epithelial phenotypes. MATERIAL AND METHODS The maxillae of Wistar rats, 1, 2, 3 and 7 wk of age, were used, and the expression of CK14, CK17, CK19, CK10/CK13 and AE1/AE3 was detected using immunoperoxidase techniques. RESULTS There was negative staining for CK10/CK13 in all the epithelia. ERM stained strongly for AE1/AE3, CK14, CK17 and CK19. During the transformation of inner enamel epithelial (IEE) cells into reduced ameloblasts and subsequently into junctional epithelium, strong staining for CK14 was evident in IEE, REE and junctional epithelium, whereas the expression of AE1/AE3 and of CK19 were initially negative in IEE and then strong in REE and junctional epithelium, respectively. In particular, the expression of CK17 was strongly positive in ERM and REE, but was negative in IEE and junctional epithelium. CONCLUSION ERM are of odontogenic origin and junctional epithelium has an epithelial phenotype different from REE and ERM. This is the first report to demonstrate that CK17 can be used as a marker to distinguish junctional epithelium from ERM.
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Chen S, Ge S, Tang W, Zhang J. Effect of friction on vibrotactile sensation of normal and dehydrated skin. Skin Res Technol 2015; 22:25-31. [PMID: 25782864 DOI: 10.1111/srt.12224] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/15/2015] [Indexed: 11/28/2022]
Abstract
BACKGROUND Vibrotactile sensation mediated is highly dependent on surface mechanical and frictional properties. Dehydration of skin could change these properties. OBJECTIVES To investigate the relationship between friction and vibrotactile sensation of normal and dehydrated skin. METHODS Vibrations were firstly measured during surface exploration using a biomimetic sensor. Piglet skin was used as human skin model to study frictional properties for both normal and dehydrated skin using an atomic force microscope on nanoscale and a pin-on-disk tribometer on macroscale. Effect of vibrational frequency on friction and vibrotactile perception was also observed on nano and macro scale for normal and dehydrated skin. RESULTS The result indicated that dehydrated skin was less sensitive than normal skin. The coefficient of friction of dehydrated skin is smaller than that of normal skin on both nano and macro scale. The coefficient of friction increases as increasing scanning frequencies. CONCLUSION There is a positive correlation between coefficient of friction and vibrotactile sensation on nanoscale and macroscale.
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McGarr A, Bekins B, Burkardt N, Dewey J, Earle P, Ellsworth W, Ge S, Hickman S, Holland A, Majer E, Rubinstein J, Sheehan A. Geophysics. Coping with earthquakes induced by fluid injection. Science 2015; 347:830-1. [PMID: 25700505 DOI: 10.1126/science.aaa0494] [Citation(s) in RCA: 155] [Impact Index Per Article: 17.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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81
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Ge S, Agbakpe M, Wu Z, Kuang L, Zhang W, Wang X. Influences of surface coating, UV irradiation and magnetic field on the algae removal using magnetite nanoparticles. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2015; 49:1190-6. [PMID: 25486124 DOI: 10.1021/es5049573] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Magnetophoretic separation is a promising and sustainable technology for rapid algal separation or removal from water. This work demonstrated the application of magnetic magnetite nanoparticles (MNPs) coated with a cationic polymer, polyethylenimine (PEI), toward the separation of Scenedesmus dimorphus from the medium broth. The influences of surface coating, UV irradiation, and magnetic field on the magnetophoretic separation were systematically examined. After PEI coating, zeta potential of MNPs shifted from −7.9 ± 2.0 to +39.0 ± 3.1 mV at a pH of 7.0, which improved MNPs-algae interaction and helped reduce the dose demand of MNPs (e.g., from 0.2 to 0.1 g·g(–1) while the harvesting efficiency (HE) of over 80% remained unchanged). The extended Derjaguin–Landau–Verwey–Overbeek theory predicted a strong attractive force between PEI-coated MNPs and algae, which supported the improved algal harvesting. Moreover, the HE was greater under the UV365 irradiation than that under the UV254, and increased with the irradiation intensity. Continuous application of the external magnetic field at high strength remarkably improved the algal harvesting. Finally, the reuse of MNPs for multiple cycles of algal harvesting was studied, which aimed at increasing the sustainability and lowering the cost.
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Agbakpe M, Ge S, Zhang W, Zhang X, Kobylarz P. Algae harvesting for biofuel production: influences of UV irradiation and polyethylenimine (PEI) coating on bacterial biocoagulation. BIORESOURCE TECHNOLOGY 2014; 166:266-272. [PMID: 24926598 DOI: 10.1016/j.biortech.2014.05.060] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2014] [Revised: 05/15/2014] [Accepted: 05/17/2014] [Indexed: 06/03/2023]
Abstract
There is a pressing need to develop efficient and sustainable separation technologies to harvest algae for biofuel production. In this work, two bacterial species (Escherichia coli and Rhodococus sp.) were used as biocoagulants to harvest Chlorella zofingiensis and Scenedesmus dimorphus. The influences of UV irradiation and polyethylenimine (PEI)-coating on the algal harvesting efficiency were investigated. Results showed that the UV irradiation could slightly enhance bacteria-algae biocoagulation and algal harvesting efficiency. In contrast, the PEI-coated E. coli cells noticeably increased the harvesting efficiencies from 23% to 83% for S. dimorphus when compared to uncoated E. coli cells. Based on the soft-particle Derjaguin-Landau-Verwey-Overbeek (DLVO) theory, an energy barrier existed between uncoated E. coli cells and algal cells, whereas the PEI coating on E. coli cells eliminated the energy barrier, thereby the biocoagulation was significantly improved. Overall, this work presented groundwork toward the potential use of bacterial biomass for algal harvesting from water.
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Keranen KM, Weingarten M, Abers GA, Bekins BA, Ge S. Induced earthquakes. Sharp increase in central Oklahoma seismicity since 2008 induced by massive wastewater injection. Science 2014; 345:448-51. [PMID: 24993347 DOI: 10.1126/science.1255802] [Citation(s) in RCA: 91] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Unconventional oil and gas production provides a rapidly growing energy source; however, high-production states in the United States, such as Oklahoma, face sharply rising numbers of earthquakes. Subsurface pressure data required to unequivocally link earthquakes to wastewater injection are rarely accessible. Here we use seismicity and hydrogeological models to show that fluid migration from high-rate disposal wells in Oklahoma is potentially responsible for the largest swarm. Earthquake hypocenters occur within disposal formations and upper basement, between 2- and 5-kilometer depth. The modeled fluid pressure perturbation propagates throughout the same depth range and tracks earthquakes to distances of 35 kilometers, with a triggering threshold of ~0.07 megapascals. Although thousands of disposal wells operate aseismically, four of the highest-rate wells are capable of inducing 20% of 2008 to 2013 central U.S. seismicity.
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Ge S, Peng Y, Qiu S, Zhu A, Ren N. Complete nitrogen removal from municipal wastewater via partial nitrification by appropriately alternating anoxic/aerobic conditions in a continuous plug-flow step feed process. WATER RESEARCH 2014; 55:95-105. [PMID: 24602864 DOI: 10.1016/j.watres.2014.01.058] [Citation(s) in RCA: 124] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2013] [Revised: 01/24/2014] [Accepted: 01/26/2014] [Indexed: 06/03/2023]
Abstract
This study assessed the technical feasibility of removing nitrogen from municipal wastewater by partial nitrification (nitritation) in a continuous plug-flow step feed process. Nitrite in the effluent accumulated to over 81.5 ± 9.2% but disappeared with the transition of process operation from anoxic/oxic mode to the anaerobic/anoxic/oxic mode. Batch tests showed obvious ammonia oxidizing bacteria (AOB) stimulation (advanced ammonia oxidation rate) and nitrite (NOB) oxidizing bacteria inhibition (reduced nitrite oxidation rate) under transient anoxic conditions. Two main factors contributed to nitritation in this continuous plug-flow process: One was the alternating anoxic and oxic operational condition; the step feed strategy guaranteed timely denitrification in anoxic zones, allowing a reduction in energy supply (nitrite) to NOB. Fluorescence in Situ Hybridization and quantitative real-time polymerase chain reaction analysis indicated that NOB population gradually decreased to 1.0 ± 0.1% of the total bacterial population (dominant Nitrospira spp., 1.55 × 10(9) copies/L) while AOB increased approximately two-fold (7.4 ± 0.9%, 1.25 × 10(10) copies/L) during the above anoxic to anaerobic transition. Most importantly, without addition of external carbon sources, the above wastewater treatment process reached 86.0 ± 4.2% of total nitrogen (TN) removal with only 7.23 ± 2.31 mg/L of TN in the effluent, which met the discharge requirements.
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Zhu J, Zhu C, Ge S, Zhang M, Jiang L, Cui J, Ren F. Lactobacillus salivarius Ren prevent the early colorectal carcinogenesis in 1, 2-dimethylhydrazine-induced rat model. J Appl Microbiol 2014; 117:208-16. [PMID: 24754742 DOI: 10.1111/jam.12499] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2014] [Revised: 03/03/2014] [Accepted: 03/17/2014] [Indexed: 12/14/2022]
Abstract
AIMS The objective of this study was to investigate the impact of Lactobacillus salivarius Ren (LS) on modulating colonic micro flora structure and influencing host colonic health in a rat model with colorectal precancerous lesions. METHODS AND RESULTS Male F344 rats were injected with 1, 2-dimethylhydrazine (DMH) and treated with LS of two doses (5 × 10(8) and 1 × 10(10) CFU kg(-1) body weight) for 15 weeks. The colonic microflora profiles, luminal metabolites, epithelial proliferation and precancerous lesions [aberrant crypt foci (ACF)] were determined. A distinct segregation of colonic microflora structures was observed in LS-treated group. The abundance of one Prevotella-related strain was increased, and the abundance of one Bacillus-related strain was decreased by LS treatment. These changes were accompanied by increased short-chain fatty acid levels and decreased azoreductase activity. LS treatment also reduced the number of ACF by c. 40% and suppressed epithelial proliferation. CONCLUSIONS Lactobacillus salivarius Ren improved the colonic microflora structures and the luminal metabolisms in addition preventing the early colorectal carcinogenesis in DMH-induced rat model. SIGNIFICANCE AND IMPACT OF THE STUDY Colonic microflora is an important factor in colorectal carcinogenesis. Modulating the structural shifts of microflora may provide a novel option for preventing colorectal carcinogenesis. This study suggested a potential probiotic-based approach to modulate the intestinal microflora in the prevention of colorectal carcinogenesis.
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Simon L, Liu L, Murphy K, Ge S, Hotaling J, Aston KI, Emery B, Carrell DT. Comparative analysis of three sperm DNA damage assays and sperm nuclear protein content in couples undergoing assisted reproduction treatment. Hum Reprod 2014; 29:904-17. [PMID: 24619433 DOI: 10.1093/humrep/deu040] [Citation(s) in RCA: 95] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
STUDY QUESTION Is there an association between sperm DNA damage, measured by three different assays, sperm nuclear protein content and clinical outcomes in assisted reproduction treatment (ART)? SUMMARY ANSWER Sperm DNA damage measured by terminal deoxynucleotidyltransferase-mediated dUTP nick-end labelling (TUNEL) and the Comet assay were significantly associated with ART outcomes in our single institution study. WHAT IS KNOWN ALREADY Abnormal protamine expression is known to be associated with sperm DNA damage and male infertility. A number of studies have shown a significant relationship between sperm DNA damage and ART outcomes. To date, there are no large studies providing direct comparisons of DNA damage tests within the same study population. Thus, the prognostic value for each method remains unknown. STUDY DESIGN, SIZE, DURATION Cross-sectional study of 238 men from infertile couples undergoing ART at the University Center for Reproductive Medicine, Utah, USA, between April 2011 and March 2013. PARTICIPANTS/MATERIALS, SETTING, METHODS Sperm from men undergoing ART were tested for DNA damage using the alkaline Comet assay, TUNEL and flow cytometric chromatin evaluation (FCCE) assays. Histone retention was analysed using the aniline blue staining method, whereas protamine content (proteins P1 and P2) and ratio were analysed using acid urea gel electrophoresis. The prognostic value of each sperm DNA test to predict clinical pregnancy was calculated. MAIN RESULTS AND THE ROLE OF CHANCE Histone retention was associated with sperm DNA damage (P < 0.001), reduced embryo quality (P = 0.005) and clinical pregnancies (P < 0.001). The mean percentage of sperm with DNA damage was significantly higher in sperm from non-pregnant couples compared with that from pregnant couples, as measured by TUNEL assay (15.04 ± 1.16% versus 8.79 ± 0.56%; P < 0.001) and alkaline Comet assay (72.79 ± 2.49% versus 55.86 ± 2.29%; P < 0.001). There was no association between clinical pregnancies and DNA fragmentation index measured by FCCE (12.97 ± 1.46 versus 14.93 ± 1.65; P = 0.379). Of the protamine parameters analysed, only the P1/P2 ratio was associated with sperm count (P = 0.013), men's age (P = 0.037), maturity (P = 0.049) and blastocyst quality (P = 0.012). Histone retention and sperm DNA damage measured by Comet and TUNEL assays were associated with fertilization rate (P < 0.05), embryo quality (P < 0.05) and implantation rate (P < 0.05). LIMITATIONS, REASONS FOR CAUTION A potential drawback of this study is that it is cross-sectional. Generally in such studies there is more than one variable that could cause the effect. Analysing sperm is one part of the equation; there are also a number of female factors that have the potential to influence ART outcomes. Therefore, given the large and well-established role of female factors in infertility, normal sperm DNA integrity and protamination do not necessarily ensure clinical pregnancy in ART. Thus, female factors can reduce the prognostic value of sperm DNA tests. Further, our use of native semen instead of prepared sperm may have iatrogenically increased the DNA damage. WIDER IMPLICATIONS OF THE FINDINGS Alteration in sperm nuclear protein affects sperm DNA integrity. Further, with the current dataset, TUNEL and Comet assays appeared more predictive of ART success than FCCE. STUDY FUNDING/COMPETING INTEREST(S) No personal or direct financial support has been received for any of this work. The authors declare no competing interests. TRIAL REGISTRATION NUMBER N/A.
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Ge S, Zhu Y, Qiu S, Yang X, Ma B, Huang D, Peng Y. Evaluation of upgrading a full-scale activated sludge process integrated with floating biofilm carriers. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2014; 70:1594-1601. [PMID: 25429446 DOI: 10.2166/wst.2014.370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
This study evaluated the performance of a full-scale upgrade of an existing wastewater treatment plant (WWTP) with the intermittent cyclic extended aeration system (ICEAS), located in Qingdao, China. The ICEAS system was not able to meet effluent standards; therefore, a series of modifications and control strategies were applied as follows: (1) floating plastic carriers were added to the tank to aid biofilm formation; (2) operation parameters such as mixing and aeration time, feeding rate, and settling time were adjusted and controlled with a real-time control system; (3) a sludge return system and submersible water impellers were added; (4) the aeration system was also improved to circulate carriers and prevent clogging. The modified ICEAS system exhibited efficient organic and nutrient removal, with high removal efficiencies of chemical oxygen demand (89.57 ± 4.10%), NH4(+)-N (95.46 ± 3.80%), and total phosphorus (91.90 ± 4.36%). Moreover, an annual power reduction of 1.04 × 10(7) kW·h was realized as a result of these modifications.
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Wang CH, Zheng XM, Xu Q, Yuan XP, Huang L, Zhou HF, Wei XH, Ge S. Genetic diversity and classification of Oryza sativa with emphasis on Chinese rice germplasm. Heredity (Edinb) 2013; 112:489-96. [PMID: 24326293 DOI: 10.1038/hdy.2013.130] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2013] [Revised: 09/15/2013] [Accepted: 10/14/2013] [Indexed: 11/09/2022] Open
Abstract
Despite extensive studies on cultivated rice, the genetic structure and subdivision of this crop remain unclear at both global and local scales. Using 84 nuclear simple sequence repeat markers, we genotyped a panel of 153 global rice cultivars covering all previously recognized groups and 826 cultivars representing the diversity of Chinese rice germplasm. On the basis of model-based grouping, neighbour-joining tree and principal coordinate analysis, we confirmed the widely accepted five major groups of rice cultivars (indica, aus, aromatic, temperate japonica and tropical japonica), and demonstrated that rayada rice was unique in genealogy and should be treated as a new (the sixth) major group of rice germplasm. With reference to the global classification of rice cultivars, we identified three major groups (indica, temperate japonica and tropical japonica) in Chinese rice germplasm and showed that Chinese temperate japonica contained higher diversity than that of global samples, whereas Chinese indica and tropical japonica maintained slightly lower diversity than that present in the global samples. Particularly, we observed that all seasonal, drought-tolerant and endosperm types occurred within each of three major groups of Chinese cultivars, which does not support previous claims that seasonal differentiation exists in Indica and drought-tolerant differentiation is present in Japonica. It is most likely that differentiation of cultivar types arose multiple times stemming from artificial selection for adaptation to local environments.
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Li S, Ge S, Yang P. Immunohistochemical localization of connective tissue growth factor, transforming growth factor-beta1 and phosphorylated-smad2/3 in the developing periodontium of rats. J Periodontal Res 2013; 49:624-33. [PMID: 24224514 DOI: 10.1111/jre.12143] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/29/2013] [Indexed: 01/05/2023]
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Luo J, Liu R, Jiang L, Liu Z, Sun G, Ge S. Cross-sections of 45Sc(n, 2n)44m,gSc reaction from the reaction threshold to 20 MeV. RADIOCHIM ACTA 2013. [DOI: 10.1524/ract.2013.2065] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Summary
Cross sections of 45Sc(n, 2n)44m,g Sc reactions and their isomeric cross section ratios σ
m
/σ
g have been measured at three neutron energies between 13.5 and 14.8 MeV using the activation technique. The pure cross section of the groundstate was then obtained by utilizing the absolute cross section of the metastable state and analysis methods of residual nuclear decay. The monoenergetic neutron beam was produced via the 3H(d, n)4He reaction. The cross sections were also estimated with the TALYS-1.2 nuclear model code using different level density options, at neutron energies varying from the reaction threshold to 20 MeV. Results are also discussed and compared with some corresponding values found in the literature.
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Simon L, Ge S, Carrell D. Comparison of sperm quality obtained from traditional sperm selection methods with novel sperm selection approaches. Fertil Steril 2013. [DOI: 10.1016/j.fertnstert.2013.07.491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Han J, Menicanin D, Marino V, Ge S, Mrozik K, Gronthos S, Bartold PM. Assessment of the regenerative potential of allogeneic periodontal ligament stem cells in a rodent periodontal defect model. J Periodontal Res 2013; 49:333-45. [DOI: 10.1111/jre.12111] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/10/2013] [Indexed: 12/21/2022]
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Ge S, Quan M, Zhang L, Liu W, Mohan R. SU-E-T-701: Equivalence and Differences Between Robust Optimization Methods and PTV Based Optimization Method for IMRT and IMPT. Med Phys 2013. [DOI: 10.1118/1.4815128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Patel B, Coyle JC, Poe E, Rosenbloom C, Stevens RM, Coren JS, Ge S, Mesia IC, Moulick A, Toib A. Three dimensional rotational angiography imaging of double aortic arch vascular ring. IMAGES IN PAEDIATRIC CARDIOLOGY 2013; 15:1-6. [PMID: 23720694 PMCID: PMC3663154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
BACKGROUND Three dimensional (3D) rotational angiography is a technique used increasingly for imaging in congenital heart disease. RESULTS We describe the use of this technique for imaging of double aortic arch vascular ring and discuss the advantages of this modality. CONCLUSIONS 3D rotational angiography is an excellent tool for imaging of various vascular anomalies. It provides high quality accurate images through a quick and safe procedure.
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Kumamoto N, Gu Y, Wang J, Jenoschka S, Takemaru K, Levine J, Ge S. A role for primary cilia in glutamatergic synaptic integration of adult-born neurons. Cilia 2012. [PMCID: PMC3555798 DOI: 10.1186/2046-2530-1-s1-p31] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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96
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Ge S, Zhu Y, Lu C, Wang S, Peng Y. Full-scale demonstration of step feed concept for improving an anaerobic/anoxic/aerobic nutrient removal process. BIORESOURCE TECHNOLOGY 2012; 120:305-313. [PMID: 22796144 DOI: 10.1016/j.biortech.2012.06.030] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2012] [Revised: 06/11/2012] [Accepted: 06/13/2012] [Indexed: 06/01/2023]
Abstract
A small wastewater treatment plant (WWTP) failed to meet effluent requirements of the first-A discharge standard in China, with the anaerobic/anoxic/oxic (A/A/O) process treating municipal and partial industrial wastewater. Thus an A/O step feed process (Anoxic/oxic/anoxic/oxic/anoxic/oxic) with floating plastic carriers in aerobic units was proposed to improve nutrient removal within the existing WWTP. Four main reform strategies were applied: (1) the original influent was divided into three streams which led into corresponding anoxic units; (2) floating plastic carriers were placed in the second and third oxic units; (3) nitrified liquid recycling was omitted; (4) channel shapes and sizes were adjusted between adjacent units to prevent backflow. After these modifications were implemented, the total nitrogen and phosphorus concentrations in the effluent were reduced from 20.8 to 14.2mg/L, and from 1.89 to 0.57 mg/L, respectively. Moreover, annual electricity consumption in the WWTP was reduced by 245 MWh as a result of these modifications.
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Hetts S, Turk A, English J, Mocco J, Prestigiacomo C, Nesbit G, Ge S, Jin J, Murayama Y, Gholkar A, Barnwell S, Lopes D, Gobin Y, Johnston S, McDougall C. O-010 Stent assisted coiling versus coiling of unruptured intracranial aneurysms in the MAPS trial: safety, efficacy, and mid term outcomes. J Neurointerv Surg 2012. [DOI: 10.1136/neurintsurg-2012-010455a.10] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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Nesbit G, Johnston S, Gholkar A, Turk A, Hetts S, Mocco J, Imm S, Ge S, McDougall C. P-037 Death and disability after coil embolization of ruptured and unruptured aneurysms in the Matrix and Platinum Science (MAPS) trial. J Neurointerv Surg 2012. [DOI: 10.1136/neurintsurg-2012-010455b.37] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Nojima K, Ge S, Katayama Y, Iramina K. Relationship between pulse number of rTMS and inter reversal time of perceptual reversal. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2012; 2011:8106-9. [PMID: 22256223 DOI: 10.1109/iembs.2011.6091999] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The aim of this study is to investigate the stimulus parameter which affects the repetitive Transcranial Magnetic Stimulation (rTMS) effect. It is said that the condition under 1Hz rTMS induces the inhibition effect. On the other hand, the condition over 1 Hz rTMS induces the facilitation effect. However the number of pulses of rTMS is also important factor. In this study, we focused on the number of pulses. We used the cognitive task of perceptual reversal and compared the rTMS effects of different condition under 1 Hz which is the inhibition condition. It has been known that the right superior parietal lobule (SPL) has a role in perceptual reversal. We applied rTMS over the SPL and measured the inter-reversal time (IRT) of perceptual reversal. The results showed that when 0.25 Hz 60 pulses, 0.5 Hz 60 pulses and 1 Hz 60 pulses of rTMS was applied over the right SPL, the IRT was significantly smaller. On the other hand, when 1 Hz 240 pulses of rTMS was applied over the right SPL, the IRT was significantly longer. When 0.25 Hz 12 0 pulses, 0.5 Hz 120 pulses and 1Hz 120 pulses of rTMS was applied over the right SPL, there were no significant differences. Furthermore, to investigate the rTMS effects, when rTMS are applied over the motor area, we measured the motor evoked potential (MEP). The more pulses of rTMS was applied, the smaller the amplitude of MEP became. From these results, it was found that the IRT of perceptual reversal and the amplitude of MEP primarily affected by the number of pulses of rTMS.
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Ge S, Liu W, Quan E, Mohan R. WE-G-BRCD-02: Speed Up Standard Optimization of IMPT Treatment Planning Through the Application of GPUs. Med Phys 2012; 39:3964-3965. [PMID: 28519616 DOI: 10.1118/1.4736179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE While intensity-modulated proton therapy (IMPT) has great potential to deliver highly conformal tumoricidal dose to targets whilst minimizing dose to nearby organs-at-risk, IMPT optimization is very time consuming and memory extensive due to finer dose grids and a large number of energy layers used compared to intensity-modulated radiation therapy (IMRT). In this presentation, for the first time, a new approach is introduced to speed up the IMPT treatment planning through application of parallel computing with Graphic Processor Units (GPUs). METHODS Parallel computation with GPUs, which are affordable and can be plugged in a workstation easily, is potentially a good way to improve the computation efficiency. In our approach, we used the standard quadratic objective function to optimize the intensity map of beamlets. The objective function and gradient equations, which are the most time consuming parts of the optimization, were calculated with GPUs. We compared the computation time of optimization done by an Intel ® Core™ i7 CPU and that by the same CPU accelerated by GPUs (TESLA C1060). The influence matrix was pre- calculated before optimization with an in-house proton pencil beam dose calculation engine. Two clinical cases were studied: one base-of-skull (BOS) case (clivus chordoma) and one prostate case (adenocarcinoma). The dose volume histogram (DVH) data for the tumor and critical organs were derived for comparison of optimization results generated by CPU and GPUs. RESULTS For the BOS case, application of GPUs for the optimization and overall gained 54 and 36.5 times speedup. For the prostate case, application of GPUs for the optimization and overall gained 69 and 28.5 times speedup. CONCLUSIONS The application of GPUs for the parallel computing of IMPT treatment plan optimization can dramatically improve the computation efficiency. The optimization time can be reduced from typically half to one hour to only several minutes.
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