51
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He C, Kulkarni SS, Thuaud F, Bode JW. Chemical Synthesis of the 20 kDa Heme Protein Nitrophorin 4 by α-Ketoacid-Hydroxylamine (KAHA) Ligation. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201505379] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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52
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He C, Kulkarni SS, Thuaud F, Bode JW. Chemical Synthesis of the 20 kDa Heme Protein Nitrophorin 4 by α‐Ketoacid‐Hydroxylamine (KAHA) Ligation. Angew Chem Int Ed Engl 2015; 54:12996-3001. [DOI: 10.1002/anie.201505379] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2015] [Revised: 07/27/2015] [Indexed: 11/09/2022]
Affiliation(s)
- Chunmao He
- Institute of Transformative Bio‐Molecules (WPI‐ITbM), Nagoya University, Chikusa, Nagoya 464‐8602 (Japan)
| | - Sameer S. Kulkarni
- Institute of Transformative Bio‐Molecules (WPI‐ITbM), Nagoya University, Chikusa, Nagoya 464‐8602 (Japan)
| | - Frédéric Thuaud
- Institute of Transformative Bio‐Molecules (WPI‐ITbM), Nagoya University, Chikusa, Nagoya 464‐8602 (Japan)
- Laboratorium für Organische Chemie, ETH Zurich, 8093 Zurich (Switzerland) http://www.bode.ethz.ch/
| | - Jeffrey W. Bode
- Institute of Transformative Bio‐Molecules (WPI‐ITbM), Nagoya University, Chikusa, Nagoya 464‐8602 (Japan)
- Laboratorium für Organische Chemie, ETH Zurich, 8093 Zurich (Switzerland) http://www.bode.ethz.ch/
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53
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Malins LR, Mitchell NJ, McGowan S, Payne RJ. Oxidative Deselenization of Selenocysteine: Applications for Programmed Ligation at Serine. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201504639] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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54
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Malins LR, Mitchell NJ, McGowan S, Payne RJ. Oxidative Deselenization of Selenocysteine: Applications for Programmed Ligation at Serine. Angew Chem Int Ed Engl 2015; 54:12716-21. [DOI: 10.1002/anie.201504639] [Citation(s) in RCA: 74] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2015] [Revised: 07/08/2015] [Indexed: 12/22/2022]
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55
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Affiliation(s)
- Suman Kumar Maity
- Schulich
Faculty of Chemistry Technion—Israel Institute of Technology, 3200008 Haifa, Israel
| | - Shimrit Ohayon
- Schulich
Faculty of Chemistry Technion—Israel Institute of Technology, 3200008 Haifa, Israel
| | - Ashraf Brik
- Schulich
Faculty of Chemistry Technion—Israel Institute of Technology, 3200008 Haifa, Israel
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56
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Pusterla I, Bode JW. An oxazetidine amino acid for chemical protein synthesis by rapid, serine-forming ligations. Nat Chem 2015. [PMID: 26201744 DOI: 10.1038/nchem.2282] [Citation(s) in RCA: 72] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Amide-forming ligation reactions allow the chemical synthesis of proteins by the union of unprotected peptide segments, and enable the preparation of protein derivatives not accessible by expression or bioengineering approaches. The native chemical ligation (NCL) of thioesters and N-terminal cysteines is unquestionably the most successful approach, but is not ideal for all synthetic targets. Here we describe the synthesis of an Fmoc-protected oxazetidine amino acid for use in the α-ketoacid-hydroxylamine (KAHA) amide ligation. When incorporated at the N-terminus of a peptide segment, this four-membered cyclic hydroxylamine can be used for rapid serine-forming ligations with peptide α-ketoacids. This ligation operates at low concentration (100 μM-5 mM) and mild temperatures (20-25 °C). The utility of the reaction was demonstrated by the synthesis of S100A4, a 12 kDa calcium-binding protein not easily accessible by NCL or other amide-forming reactions due to its primary sequence and properties.
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Affiliation(s)
- Ivano Pusterla
- Department of Chemistry and Applied Biosciences, Laboratorium für Organische Chemie, Vladimir Prelog Weg 3, ETH Zürich, Zürich 8093, Switzerland
| | - Jeffrey W Bode
- 1] Department of Chemistry and Applied Biosciences, Laboratorium für Organische Chemie, Vladimir Prelog Weg 3, ETH Zürich, Zürich 8093, Switzerland [2] Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya 464-8602, Japan
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57
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Rohrbacher F, Deniau G, Luther A, Bode JW. Spontaneous head-to-tail cyclization of unprotected linear peptides with the KAHA ligation. Chem Sci 2015; 6:4889-4896. [PMID: 29142720 PMCID: PMC5664356 DOI: 10.1039/c5sc01774b] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2015] [Accepted: 06/05/2015] [Indexed: 12/03/2022] Open
Abstract
The α-ketoacid–hydroxylamine (KAHA) ligation enables the direct cyclization of unprotected peptides upon cleavage, without coupling reagents or purification of precursors. We report the synthesis of a library of 24 cyclic peptides and a detailed mechanistic study.
The α-ketoacid–hydroxylamine (KAHA) ligation with 5-oxaproline enables the direct cyclization of peptides upon cleavage from a solid support, without coupling reagents, protecting groups, or purification of the linear precursors. This Fmoc SPPS-based method was applied to the synthesis of a library of 24 homoserine-containing cyclic peptides and was compared side-by-side with the synthesis of the same products using a standard method for cyclizing side-chain protected substrates. A detailed mechanistic study including 2H and 18O labeling experiments and the characterization of reaction intermediates by NMR and mass spectrometry is reported.
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Affiliation(s)
- Florian Rohrbacher
- Laboratorium für Organische Chemie , Department of Chemistry and Applied Biosciences , ETH Zürich , 8093 Zürich , Switzerland . ; http://www.bode.ethz.ch
| | - Gildas Deniau
- Polyphor Ltd. , Hegenheimermattweg 125 , 4123 Allschwil , Switzerland . http://www.polyphor.com
| | - Anatol Luther
- Polyphor Ltd. , Hegenheimermattweg 125 , 4123 Allschwil , Switzerland . http://www.polyphor.com
| | - Jeffrey W Bode
- Laboratorium für Organische Chemie , Department of Chemistry and Applied Biosciences , ETH Zürich , 8093 Zürich , Switzerland . ; http://www.bode.ethz.ch.,Institute of Transformative Bio-Molecules (WPI-ITbM) , Nagoya University , Chikusa , Nagoya 464-8602 , Japan . http://www.itbm.nagoya-u.ac.jp
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58
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Harmand TJ, Kulkarni SS, Bode JW. Optimized synthesis of a cyanosulfurylide linker for Fmoc-SPPS of C-terminal peptide α-ketoacids. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2015.01.048] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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59
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Chow HY, Li X. Development of thiol-independent peptide ligations for protein chemical synthesis. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2015.04.086] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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60
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Raj M, Wu H, Blosser SL, Vittoria MA, Arora PS. Aldehyde capture ligation for synthesis of native peptide bonds. J Am Chem Soc 2015; 137:6932-40. [PMID: 25966041 DOI: 10.1021/jacs.5b03538] [Citation(s) in RCA: 57] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Chemoselective reactions for amide bond formation have transformed the ability to access synthetic proteins and other bioconjugates through ligation of fragments. In these ligations, amide bond formation is accelerated by transient enforcement of an intramolecular reaction between the carboxyl and the amine termini of two fragments. Building on this principle, we introduce an aldehyde capture ligation that parlays the high chemoselective reactivity of aldehydes and amines to enforce amide bond formation between amino acid residues and peptides that are difficult to ligate by existing technologies.
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Affiliation(s)
- Monika Raj
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, United States
| | - Huabin Wu
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, United States
| | - Sarah L Blosser
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, United States
| | - Marc A Vittoria
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, United States
| | - Paramjit S Arora
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, United States
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61
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Shpak-Kraievskyi P, Mankou Makaya A, Beauchard A, Martel A, Laurent MY, Dujardin G. [3+2] Route to Quaternary Oxaprolinol Derivatives as Masked Precursors of Disubstituted β3,β3-Amino Aldehyde. European J Org Chem 2015. [DOI: 10.1002/ejoc.201500339] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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62
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Chen M, Heimer P, Imhof D. Synthetic strategies for polypeptides and proteins by chemical ligation. Amino Acids 2015; 47:1283-99. [DOI: 10.1007/s00726-015-1982-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2015] [Accepted: 04/02/2015] [Indexed: 11/30/2022]
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63
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Záborský O, Šoral M, Fischer R. Application of the Tf2O/2-chloropyridine couple in the synthesis of novel 4,5-unsubstituted N-carbamoyl-2,3-dihydroisoxazoles. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2015.03.048] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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64
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Noda H, Bode JW. Synthesis of Chemically and Configurationally Stable Monofluoro Acylboronates: Effect of Ligand Structure on their Formation, Properties, and Reactivities. J Am Chem Soc 2015; 137:3958-66. [DOI: 10.1021/jacs.5b00822] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hidetoshi Noda
- LaboratoriumfurOrganischeChemie,
Department of Chemistry and Applied Biosciences, ETH−Zurich, 8093 Zurich, Switzerland
| | - Jeffrey W. Bode
- LaboratoriumfurOrganischeChemie,
Department of Chemistry and Applied Biosciences, ETH−Zurich, 8093 Zurich, Switzerland
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65
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Lee CL, Lam HY, Li X. Serine/threonine ligation for natural cyclic peptide syntheses. Nat Prod Rep 2015; 32:1274-9. [DOI: 10.1039/c5np00001g] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The effectiveness of Ser/Thr ligation-mediated peptide cyclization has been demonstrated by the synthesis of cyclic peptide natural products, such as daptomycin, cyclomontanin B, yunnanin C and mahafacyclin B.
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Affiliation(s)
- Chi Lung Lee
- Department of Chemistry
- The University of Hong Kong
- Hong Kong SAR
- China
- Shenzhen Institute of Research and Innovation of The University of Hong Kong
| | - Hiu Yung Lam
- Department of Chemistry
- The University of Hong Kong
- Hong Kong SAR
- China
- Shenzhen Institute of Research and Innovation of The University of Hong Kong
| | - Xuechen Li
- Department of Chemistry
- The University of Hong Kong
- Hong Kong SAR
- China
- State Key Laboratory of Synthetic Chemistry
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66
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Murar CE, Thuaud F, Bode JW. KAHA Ligations That Form Aspartyl Aldehyde Residues as Synthetic Handles for Protein Modification and Purification. J Am Chem Soc 2014; 136:18140-8. [DOI: 10.1021/ja511231f] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Claudia E. Murar
- Laboratorium
für Organische Chemie, Department of Chemistry and Applied
Biosciences, ETH−Zürich, 8093 Zürich, Switzerland
| | - Frédéric Thuaud
- Laboratorium
für Organische Chemie, Department of Chemistry and Applied
Biosciences, ETH−Zürich, 8093 Zürich, Switzerland
- Institute
of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya 464-8602, Japan
| | - Jeffrey W. Bode
- Laboratorium
für Organische Chemie, Department of Chemistry and Applied
Biosciences, ETH−Zürich, 8093 Zürich, Switzerland
- Institute
of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya 464-8602, Japan
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67
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Eftekhari-Sis B, Zirak M. Chemistry of α-oxoesters: a powerful tool for the synthesis of heterocycles. Chem Rev 2014; 115:151-264. [PMID: 25423283 DOI: 10.1021/cr5004216] [Citation(s) in RCA: 95] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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68
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Harmand TJR, Murar CE, Bode JW. New chemistries for chemoselective peptide ligations and the total synthesis of proteins. Curr Opin Chem Biol 2014; 22:115-21. [DOI: 10.1016/j.cbpa.2014.09.032] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2014] [Revised: 09/22/2014] [Accepted: 09/23/2014] [Indexed: 01/10/2023]
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69
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Lee CL, Li X. Serine/threonine ligation for the chemical synthesis of proteins. Curr Opin Chem Biol 2014; 22:108-14. [DOI: 10.1016/j.cbpa.2014.09.023] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2014] [Revised: 09/19/2014] [Accepted: 09/19/2014] [Indexed: 11/26/2022]
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70
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Wucherpfennig TG, Pattabiraman VR, Limberg FRP, Ruiz-Rodríguez J, Bode JW. Traceless Preparation of C-Terminal α-Ketoacids for Chemical Protein Synthesis by α-Ketoacid-Hydroxylamine Ligation: Synthesis of SUMO2/3. Angew Chem Int Ed Engl 2014; 53:12248-52. [DOI: 10.1002/anie.201407014] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2014] [Indexed: 12/16/2022]
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71
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Wucherpfennig TG, Rohrbacher F, Pattabiraman VR, Bode JW. Formation and Rearrangement of Homoserine Depsipeptides and Depsiproteins in the α-Ketoacid-Hydroxylamine Ligation with 5-Oxaproline. Angew Chem Int Ed Engl 2014; 53:12244-7. [DOI: 10.1002/anie.201406097] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2014] [Indexed: 12/19/2022]
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72
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Wucherpfennig TG, Rohrbacher F, Pattabiraman VR, Bode JW. Bildung und Umlagerung von Homoserin-Depsipeptiden und -proteinen durch α-Ketosäure-Hydroxylamin-Ligation mit 5-Oxaprolin. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201406097] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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73
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Wucherpfennig TG, Pattabiraman VR, Limberg FRP, Ruiz-Rodríguez J, Bode JW. Spurlose Herstellung C-terminaler α-Ketosäuren zur chemischen Proteinsynthese mittels α-Ketoäure-Hydroxylamin-Ligation: Synthese von SUMO2/3. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201407014] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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74
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Liu H, Li X. Development and application of serine/threonine ligation for synthetic protein chemistry. Org Biomol Chem 2014; 12:3768-73. [PMID: 24788202 DOI: 10.1039/c4ob00392f] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2023]
Abstract
Chemical synthesis of proteins, especially those with post-translational modifications, has offered new opportunities to study the protein structure-function relationship. In the past four years, we have developed the serine/threonine ligation (STL), which involves the chemoselective reaction between peptide salicylaldehyde esters and peptides with N-terminal serine or threonine. The method has been successfully applied to the synthesis of both linear and cyclic peptides/proteins.
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Affiliation(s)
- Han Liu
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China.
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75
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Wong CTT, Li T, Lam HY, Zhang Y, Li X. Realizing serine/threonine ligation: scope and limitations and mechanistic implication thereof. Front Chem 2014; 2:28. [PMID: 24904921 PMCID: PMC4033038 DOI: 10.3389/fchem.2014.00028] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2014] [Accepted: 04/29/2014] [Indexed: 11/13/2022] Open
Abstract
Serine/Threonine ligation (STL) has emerged as an alternative tool for protein chemical synthesis, bioconjugations as well as macrocyclization of peptides of various sizes. Owning to the high abundance of Ser/Thr residues in natural peptides and proteins, STL is expected to find a wide range of applications in chemical biology research. Herein, we have fully investigated the compatibility of the STL strategy for X-Ser/Thr ligation sites, where X is any of the 20 naturally occurring amino acids. Our studies have shown that 17 amino acids are suitable for ligation, while Asp, Glu, and Lys are not compatible. Among the working 17 C-terminal amino acids, the retarded reaction resulted from the bulky β-branched amino acid (Thr, Val, and Ile) is not seen under the current ligation condition. We have also investigated the chemoselectivity involving the amino group of the internal lysine which may compete with the N-terminal Ser/Thr for reaction with the C-terminal salicylaldehyde (SAL) ester aldehyde group. The result suggested that the free internal amino group does not adversely slow down the ligation rate.
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Affiliation(s)
- Clarence T T Wong
- Department of Chemistry, The University of Hong Kong Hong Kong, China ; State Key Laboratory of Synthetic Chemistry, University of Hong Kong Hong Kong, China
| | - Tianlu Li
- Department of Chemistry, The University of Hong Kong Hong Kong, China ; State Key Laboratory of Synthetic Chemistry, University of Hong Kong Hong Kong, China
| | - Hiu Yung Lam
- Department of Chemistry, The University of Hong Kong Hong Kong, China ; State Key Laboratory of Synthetic Chemistry, University of Hong Kong Hong Kong, China
| | - Yinfeng Zhang
- Department of Chemistry, The University of Hong Kong Hong Kong, China ; State Key Laboratory of Synthetic Chemistry, University of Hong Kong Hong Kong, China
| | - Xuechen Li
- Department of Chemistry, The University of Hong Kong Hong Kong, China ; State Key Laboratory of Synthetic Chemistry, University of Hong Kong Hong Kong, China ; Shenzhen Institute of Research and Innovation of The University of Hong Kong Shenzhen, China
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76
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Noda H, Erős G, Bode JW. Rapid Ligations with Equimolar Reactants in Water with the Potassium Acyltrifluoroborate (KAT) Amide Formation. J Am Chem Soc 2014; 136:5611-4. [DOI: 10.1021/ja5018442] [Citation(s) in RCA: 106] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Hidetoshi Noda
- Laboratorium
für Organische
Chemie, Department of Chemistry and Applied Biosciences, ETH−Zürich, 8093 Zürich, Switzerland
| | - Gábor Erős
- Laboratorium
für Organische
Chemie, Department of Chemistry and Applied Biosciences, ETH−Zürich, 8093 Zürich, Switzerland
| | - Jeffrey W. Bode
- Laboratorium
für Organische
Chemie, Department of Chemistry and Applied Biosciences, ETH−Zürich, 8093 Zürich, Switzerland
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77
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Zhang X, Cividino P, Poisson JF, Shpak-Kraievskyi P, Laurent MY, Martel A, Dujardin G, Py S. Asymmetric Synthesis of α,α-Disubstituted Amino Acids by Cycloaddition of (E)-Ketonitrones with Vinyl Ethers. Org Lett 2014; 16:1936-9. [DOI: 10.1021/ol500483t] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Xiaofei Zhang
- Département
de Chimie Moléculaire (SERCO) UMR 5250, ICMG FR-2607, CNRS-Université Joseph Fourier, BP 53, 38041 Grenoble
Cedex 09, France
- LUNAM Université du Maine, IMMM UMR 6283 CNRS, Equipe Méthodologie et Synthèse Organique, 72085 Le Mans Cedex 09, France
| | - Pascale Cividino
- Département
de Chimie Moléculaire (SERCO) UMR 5250, ICMG FR-2607, CNRS-Université Joseph Fourier, BP 53, 38041 Grenoble
Cedex 09, France
| | - Jean-François Poisson
- Département
de Chimie Moléculaire (SERCO) UMR 5250, ICMG FR-2607, CNRS-Université Joseph Fourier, BP 53, 38041 Grenoble
Cedex 09, France
| | - Pavlo Shpak-Kraievskyi
- LUNAM Université du Maine, IMMM UMR 6283 CNRS, Equipe Méthodologie et Synthèse Organique, 72085 Le Mans Cedex 09, France
| | - Mathieu Y. Laurent
- LUNAM Université du Maine, IMMM UMR 6283 CNRS, Equipe Méthodologie et Synthèse Organique, 72085 Le Mans Cedex 09, France
| | - Arnaud Martel
- LUNAM Université du Maine, IMMM UMR 6283 CNRS, Equipe Méthodologie et Synthèse Organique, 72085 Le Mans Cedex 09, France
| | - Gilles Dujardin
- LUNAM Université du Maine, IMMM UMR 6283 CNRS, Equipe Méthodologie et Synthèse Organique, 72085 Le Mans Cedex 09, France
| | - Sandrine Py
- Département
de Chimie Moléculaire (SERCO) UMR 5250, ICMG FR-2607, CNRS-Université Joseph Fourier, BP 53, 38041 Grenoble
Cedex 09, France
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78
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Verzele D, Madder A. Patchwork protein chemistry: a practitioner's treatise on the advances in synthetic peptide stitchery. Chembiochem 2014; 14:1032-48. [PMID: 23775826 DOI: 10.1002/cbic.201200775] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2012] [Indexed: 12/22/2022]
Abstract
With the study of peptides and proteins at the heart of many scientific endeavors, the omics era heralded a multitude of opportunities for chemists and biologists alike. Across the interface with life sciences, peptide chemistry plays an indispensable role, and progress made over the past decades now allows proteins to be treated as molecular patchworks stitched together through synthetic tailoring. The continuous elaboration of sophisticated strategies notwithstanding, Merrifield's solid-phase methodology remains a cornerstone of chemical protein design. Although the non-practitioner might misjudge peptide synthesis as trivial, routine, or dull given its long history, we comment here on its many advances, obstacles, and prospects from a practitioner's point of view. While sharing our perspectives through thematic highlights across the literature, this treatise provides an interpretive overview as a guide to novices, and a recap for specialists.
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Affiliation(s)
- Dieter Verzele
- Organic and Biomimetic Chemistry Research Group, Department of Organic Chemistry, Faculty of Sciences, Ghent University, Krijgslaan 281 (S4), 9000 Ghent, Belgium.
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79
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Noda H, Bode JW. Synthesis and chemoselective ligations of MIDA acylboronates with O-Me hydroxylamines. Chem Sci 2014. [DOI: 10.1039/c4sc00971a] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A chemoselective amide-bond forming ligation of N-methyliminodiacetyl (MIDA) acylboronates and O-Me hydroxylamines, including unprotected peptide substrates, is described.
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Affiliation(s)
- Hidetoshi Noda
- Laboratorium für Organische Chemie
- Departemnt of Chemistry and Applied Bioscience
- ETH Zürich
- 8093 Zurich, Switzerland
| | - Jeffrey W. Bode
- Laboratorium für Organische Chemie
- Departemnt of Chemistry and Applied Bioscience
- ETH Zürich
- 8093 Zurich, Switzerland
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80
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Liu F, Mayer JP. Protein Chemical Synthesis in Drug Discovery. PROTEIN LIGATION AND TOTAL SYNTHESIS I 2014; 362:183-228. [DOI: 10.1007/128_2014_598] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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81
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Rohrbacher F, Wucherpfennig TG, Bode JW. Chemical Protein Synthesis with the KAHA Ligation. Top Curr Chem (Cham) 2014; 363:1-31. [PMID: 25761549 DOI: 10.1007/128_2014_597] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Since the first report of the chemoselective amide bond forming reaction between α-ketoacids and hydroxylamines in 2006, the KAHA (α-ketoacid-hydroxylamine) ligation has advanced to a useful tool for the routine synthesis of small to medium sized proteins and cyclic peptides. In this chapter we introduce the concept of KAHA ligation starting with the synthesis and properties of hydroxylamines and α-ketoacids, methods for their incorporation into peptides, and give an insight into the mechanism of the KAHA ligation. We cover important improvements including sequential ligations with 5-oxaproline, traceless synthesis of peptide α-ketoacids and show their application in chemical protein synthesis and cyclic peptide synthesis. Recent developments of the KAT (potassium acyl trifluoroborate) ligation and its application as fast and chemoselective bioconjugation method are described and an outlook on ongoing work and possible future developments is given at the end of the chapter.
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Affiliation(s)
- Florian Rohrbacher
- Laboratorium für Organische Chemie, Department of Chemistry and Applied Biosciences, ETH Zürich, 8093, Zürich, Switzerland
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82
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Guan X, Chaffey PK, Zeng C, Tan Z. New Methods for Chemical Protein Synthesis. Top Curr Chem (Cham) 2014; 363:155-92. [DOI: 10.1007/128_2014_599] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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83
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Metanis N. Chemical Protein Synthesis (CPS) Meeting 2013. Chembiochem 2013; 14:1381-4. [DOI: 10.1002/cbic.201300337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2013] [Indexed: 11/10/2022]
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84
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Subirós-Funosas R, Nieto-Rodriguez L, Jensen KJ, Albericio F. COMU: scope and limitations of the latest innovation in peptide acyl transfer reagents. J Pept Sci 2013; 19:408-14. [PMID: 23712932 DOI: 10.1002/psc.2517] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2013] [Revised: 04/16/2013] [Accepted: 04/16/2013] [Indexed: 11/08/2022]
Abstract
The methodology for peptide bond formation is undergoing a continuous evolution where the main actors are being renewed. In recent years, coupling reagents based on the Oxyma scaffold, such as the uronium salt COMU, has been a groundbreaking contribution to the field. The advantages of COMU over classic benzotriazole-based reagents (HATU, HBTU, HCTU, TBTU) were proven in terms of solubility and coupling efficiency in bulky junctions in our groups and others. However, some aspects of the use of COMU need to be revised and improved, such as the stability of commercial samples in organic solvents, which hampers the compatibility with long synthesis in automated synthesizers. In this review, an overview of the main features and suggestions to improve the use of COMU are presented, along with a discussion on the best conditions for its use in microwave-assisted peptide robots.
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Affiliation(s)
- Ramon Subirós-Funosas
- Chemistry and Molecular Pharmacology Program, Institute for Research in Biomedicine, Barcelona Science Park, Baldiri Reixac 10, 08028, Barcelona, Spain
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85
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Zhang Y, Xu C, Lam HY, Lee CL, Li X. Protein chemical synthesis by serine and threonine ligation. Proc Natl Acad Sci U S A 2013; 110:6657-62. [PMID: 23569249 PMCID: PMC3637748 DOI: 10.1073/pnas.1221012110] [Citation(s) in RCA: 191] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
An efficient method has been developed for the salicylaldehyde ester-mediated ligation of unprotected peptides at serine (Ser) or threonine (Thr) residues. The utility of this peptide ligation approach has been demonstrated through the convergent syntheses of two therapeutic peptides--ovine-corticoliberin and Forteo--and the human erythrocyte acylphosphatase protein (∼11 kDa). The requisite peptide salicylaldehyde ester precursor is prepared in an epimerization-free manner via Fmoc-solid-phase peptide synthesis.
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Affiliation(s)
- Yinfeng Zhang
- Department of Chemistry, The University of Hong Kong, Hong Kong, People's Republic of China
| | - Ci Xu
- Department of Chemistry, The University of Hong Kong, Hong Kong, People's Republic of China
| | - Hiu Yung Lam
- Department of Chemistry, The University of Hong Kong, Hong Kong, People's Republic of China
| | - Chi Lung Lee
- Department of Chemistry, The University of Hong Kong, Hong Kong, People's Republic of China
| | - Xuechen Li
- Department of Chemistry, The University of Hong Kong, Hong Kong, People's Republic of China
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86
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Chemical methods for peptide and protein production. Molecules 2013; 18:4373-88. [PMID: 23584057 PMCID: PMC6270108 DOI: 10.3390/molecules18044373] [Citation(s) in RCA: 123] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2013] [Revised: 03/28/2013] [Accepted: 04/09/2013] [Indexed: 11/17/2022] Open
Abstract
Since the invention of solid phase synthetic methods by Merrifield in 1963, the number of research groups focusing on peptide synthesis has grown exponentially. However, the original step-by-step synthesis had limitations: the purity of the final product decreased with the number of coupling steps. After the development of Boc and Fmoc protecting groups, novel amino acid protecting groups and new techniques were introduced to provide high quality and quantity peptide products. Fragment condensation was a popular method for peptide production in the 1980s, but unfortunately the rate of racemization and reaction difficulties proved less than ideal. Kent and co-workers revolutionized peptide coupling by introducing the chemoselective reaction of unprotected peptides, called native chemical ligation. Subsequently, research has focused on the development of novel ligating techniques including the famous click reaction, ligation of peptide hydrazides, and the recently reported α-ketoacid-hydroxylamine ligations with 5-oxaproline. Several companies have been formed all over the world to prepare high quality Good Manufacturing Practice peptide products on a multi-kilogram scale. This review describes the advances in peptide chemistry including the variety of synthetic peptide methods currently available and the broad application of peptides in medicinal chemistry.
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87
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Khatib ME, Elagawany M, Çalışkan E, Davis EF, Faidallah HM, El-feky SA, Katritzky AR. Total synthesis of cyclic heptapeptide Rolloamide B. Chem Commun (Camb) 2013; 49:2631-3. [DOI: 10.1039/c3cc39291k] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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88
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Chiang YL, Russak JA, Carrillo N, Bode JW. Synthesis of Enantiomerically Pure Isoxazolidine Monomers for the Preparation ofβ3-Oligopeptides by Iterativeα-Keto AcidHydroxylamine (KAHA) Ligations. Helv Chim Acta 2012. [DOI: 10.1002/hlca.201200484] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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89
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Chalker JM. Prospects in the Total Synthesis of Protein Therapeutics. Chem Biol Drug Des 2012; 81:122-35. [DOI: 10.1111/cbdd.12007] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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90
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Hemantha HP, Narendra N, Sureshbabu VV. Total chemical synthesis of polypeptides and proteins: chemistry of ligation techniques and beyond. Tetrahedron 2012. [DOI: 10.1016/j.tet.2012.08.059] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Aucagne V, Valverde IE, Marceau P, Galibert M, Dendane N, Delmas AF. Towards the Simplification of Protein Synthesis: Iterative Solid-Supported Ligations with Concomitant Purifications. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201206428] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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92
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Aucagne V, Valverde IE, Marceau P, Galibert M, Dendane N, Delmas AF. Towards the Simplification of Protein Synthesis: Iterative Solid-Supported Ligations with Concomitant Purifications. Angew Chem Int Ed Engl 2012; 51:11320-4. [DOI: 10.1002/anie.201206428] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2012] [Indexed: 12/25/2022]
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93
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Ogunkoya AO, Pattabiraman VR, Bode JW. Sequential α-ketoacid-hydroxylamine (KAHA) ligations: synthesis of C-terminal variants of the modifier protein UFM1. Angew Chem Int Ed Engl 2012; 51:9693-7. [PMID: 22915333 DOI: 10.1002/anie.201204144] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2012] [Indexed: 12/17/2022]
Affiliation(s)
- Ayodele O Ogunkoya
- Laboratorium für Organische Chemie, Department of Chemistry and Applied Biosciences, ETH Zürich, Wolfgang Pauli Strasse 10, 8093 Zürich, Switzerland
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Ogunkoya AO, Pattabiraman VR, Bode JW. Sequentielle α-Ketosäurehydroxylamin(KAHA)-Ligationen: Synthese C-terminaler Varianten des Modifikationsproteins UFM1. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201204144] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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95
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Schäfer G, Matthey C, Bode JW. Eine einfache Synthese von sterisch gehinderten und elektronenarmen, sekundären Amiden aus Isocyanaten. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201204481] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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96
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Schäfer G, Matthey C, Bode JW. Facile Synthesis of Sterically Hindered and Electron-Deficient Secondary Amides from Isocyanates. Angew Chem Int Ed Engl 2012; 51:9173-5. [DOI: 10.1002/anie.201204481] [Citation(s) in RCA: 82] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2012] [Indexed: 12/29/2022]
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