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For: Kim MK, Lun DS. Methods for integration of transcriptomic data in genome-scale metabolic models. Comput Struct Biotechnol J 2014;11:59-65. [PMID: 25379144 PMCID: PMC4212280 DOI: 10.1016/j.csbj.2014.08.009] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
Number Cited by Other Article(s)
51
Liu Z, Li W, Lv J, Xie R, Huang H, Li Y, He Y, Jiang J, Chen B, Guo S, Chen L. Identification of potential COPD genes based on multi-omics data at the functional level. MOLECULAR BIOSYSTEMS 2016;12:191-204. [PMID: 26575263 DOI: 10.1039/c5mb00577a] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/17/2025]
52
Shi H, Schwender J. Mathematical models of plant metabolism. Curr Opin Biotechnol 2015;37:143-152. [PMID: 26723012 DOI: 10.1016/j.copbio.2015.10.008] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2015] [Revised: 10/16/2015] [Accepted: 10/26/2015] [Indexed: 11/24/2022]
53
Kim M, Yi JS, Lakshmanan M, Lee DY, Kim BG. Transcriptomics-based strain optimization tool for designing secondary metabolite overproducing strains of Streptomyces coelicolor. Biotechnol Bioeng 2015;113:651-60. [PMID: 26369755 DOI: 10.1002/bit.25830] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2015] [Revised: 08/26/2015] [Accepted: 09/07/2015] [Indexed: 12/23/2022]
54
Spies D, Ciaudo C. Dynamics in Transcriptomics: Advancements in RNA-seq Time Course and Downstream Analysis. Comput Struct Biotechnol J 2015;13:469-77. [PMID: 26430493 PMCID: PMC4564389 DOI: 10.1016/j.csbj.2015.08.004] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2015] [Revised: 08/05/2015] [Accepted: 08/07/2015] [Indexed: 12/17/2022]  Open
55
From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems. Cell Mol Life Sci 2015;72:4287-308. [PMID: 26254872 PMCID: PMC4611022 DOI: 10.1007/s00018-015-2004-1] [Citation(s) in RCA: 79] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2015] [Revised: 07/23/2015] [Accepted: 07/28/2015] [Indexed: 12/30/2022]
56
Takeda H, Takai A, Marusawa H. Comprehensive characterization of hepatitis B virus-associated multifocal hepatocellular carcinoma using a multi-omics strategy. ANNALS OF TRANSLATIONAL MEDICINE 2015;3:3. [PMID: 25705635 PMCID: PMC4293482 DOI: 10.3978/j.issn.2305-5839.2014.12.10] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Subscribe] [Scholar Register] [Received: 11/25/2014] [Accepted: 11/26/2014] [Indexed: 11/14/2022]
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