51
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Wu J, Zhao L, Xu X, Bertrand N, Choi WII, Yameen B, Shi J, Shah V, Mulvale M, MacLean JL, Farokhzad OC. Hydrophobic Cysteine Poly(disulfide)-based Redox-Hypersensitive Nanoparticle Platform for Cancer Theranostics. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201503863] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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52
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Wu J, Zhao L, Xu X, Bertrand N, Choi WI, Yameen B, Shi J, Shah V, Mulvale M, MacLean JL, Farokhzad OC. Hydrophobic Cysteine Poly(disulfide)-based Redox-Hypersensitive Nanoparticle Platform for Cancer Theranostics. Angew Chem Int Ed Engl 2015; 54:9218-23. [PMID: 26119453 DOI: 10.1002/anie.201503863] [Citation(s) in RCA: 146] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2015] [Revised: 05/20/2015] [Indexed: 12/29/2022]
Abstract
Selective tumor targeting and drug delivery are critical for cancer treatment. Stimulus-sensitive nanoparticle (NP) systems have been designed to specifically respond to significant abnormalities in the tumor microenvironment, which could dramatically improve therapeutic performance in terms of enhanced efficiency, targetability, and reduced side-effects. We report the development of a novel L-cysteine-based poly (disulfide amide) (Cys-PDSA) family for fabricating redox-triggered NPs, with high hydrophobic drug loading capacity (up to 25 wt% docetaxel) and tunable properties. The polymers are synthesized through one-step rapid polycondensation of two nontoxic building blocks: L-cystine ester and versatile fatty diacids, which make the polymer redox responsive and give it a tunable polymer structure, respectively. Alterations to the diacid structure could rationally tune the physicochemical properties of the polymers and the corresponding NPs, leading to the control of NP size, hydrophobicity, degradation rate, redox response, and secondary self-assembly after NP reductive dissociation. In vitro and in vivo results demonstrate these NPs' excellent biocompatibility, high selectivity of redox-triggered drug release, and significant anticancer performance. This system provides a promising strategy for advanced anticancer theranostic applications.
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Affiliation(s)
- Jun Wu
- Laboratory of Nanomedicine and Biomaterials, Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115 (USA)
| | - Lili Zhao
- Laboratory of Nanomedicine and Biomaterials, Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115 (USA).,Department of Endoscopy, the First Affiliated Hospital of Nanjing Medical University, Jiangsu Province Hospital, Nanjing, Jiangsu, 210029 (P.R. China)
| | - Xiaoding Xu
- Laboratory of Nanomedicine and Biomaterials, Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115 (USA)
| | - Nicolas Bertrand
- David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139 (USA)
| | - Won Ii Choi
- Laboratory of Nanomedicine and Biomaterials, Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115 (USA)
| | - Basit Yameen
- Laboratory of Nanomedicine and Biomaterials, Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115 (USA)
| | - Jinjun Shi
- Laboratory of Nanomedicine and Biomaterials, Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115 (USA)
| | - Vishva Shah
- Laboratory of Nanomedicine and Biomaterials, Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115 (USA)
| | - Matthew Mulvale
- Laboratory of Nanomedicine and Biomaterials, Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115 (USA)
| | - James L MacLean
- Laboratory of Nanomedicine and Biomaterials, Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115 (USA)
| | - Omid C Farokhzad
- Laboratory of Nanomedicine and Biomaterials, Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115 (USA). .,King Abdulaziz University, Jeddah (Saudi Arabia).
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El-Safty SA, Sakai M, Selim MM, Hendi AA. Mesosponge Optical Sinks for Multifunctional Mercury Ion Assessment and Recovery from Water Sources. ACS APPLIED MATERIALS & INTERFACES 2015; 7:13217-31. [PMID: 25965073 DOI: 10.1021/acsami.5b02969] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Using the newly developed organic-inorganic colorant membrane is an attractive approach for the optical detection, selective screening and removal, and waste management recovery of highly toxic elements, such as Hg(II) ions, from water sources. In the systematic mesosponge optical sinks (MOSs), anchoring organic colorants into 3D, well-defined cage cavities and interconnected tubular pores (10 nm) in the long microscale channels of membrane scaffolds enhances the requirements and intrinsic properties of the hierarchal membrane. This scalable design is the first to allow control of the multifunctional processes of a membrane in a one-step screening procedure, such as the detection/recognition, removal, and filtration of ultratrace Hg(II) ions, even from actual water sources (i.e., tap, underground). The selective recovery, detection, and extraction processes of Hg(II) ions in a heterogeneous mixture with inorganic cations and anions as well as organic molecules and surfactants are mainly dependent on the structure of the colorant agent, the pH conditions, competitive ion-system compositions and concentrations, and Hg-to-colorant binding events. Our result shows that the solid MOS membrane arrays can be repeatedly recycled and retain their hierarchal mesosponge sink character, avoiding fouling via the precipitation of metal salts as a result of the reuse cycle. The Hg(II) ion rejection and the permeation of nonselective elements based on the membrane filtration protocol may be key considerations in water purification and separation requirements. The selective recovery process of Hg(II) ions in actual contaminated samples collected from tap and underground water sources in Saudi Arabia indicates the practical feasibility of our designed MOS membrane arrays.
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Affiliation(s)
- Sherif A El-Safty
- †National Institute for Materials Science (NIMS), 1-2-1 Sengen, Tsukuba-shi, Ibaraki-ken, 05-0047, Japan
- ‡Graduate School for Advanced Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo, 169-8555, Japan
| | | | - Mahmoud M Selim
- ∥Department of Mathematics, Al-Aflaj College of Science and Human Studies, Prince Sattam Bin Abdulaziz University, Al-Aflaj 710-11912, Saudi Arabia
| | - Awatif A Hendi
- ⊥Department of Physics, College of Science and Humanities-Hawtat Bani Tamim, Prince Sattam Bin Abdulaziz University, Hawtat Bani Tamim, Saudi Arabia
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Tram K, Xia J, Gysbers R, Li Y. An Efficient Catalytic DNA that Cleaves L-RNA. PLoS One 2015; 10:e0126402. [PMID: 25946137 PMCID: PMC4422682 DOI: 10.1371/journal.pone.0126402] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2015] [Accepted: 04/01/2015] [Indexed: 12/22/2022] Open
Abstract
Many DNAzymes have been isolated from synthetic DNA pools to cleave natural RNA (D-RNA) substrates and some have been utilized for the design of aptazyme biosensors for bioanalytical applications. Even though these biosensors perform well in simple sample matrices, they do not function effectively in complex biological samples due to ubiquitous RNases that can efficiently cleave D-RNA substrates. To overcome this issue, we set out to develop DNAzymes that cleave L-RNA, the enantiomer of D-RNA, which is known to be completely resistant to RNases. Through in vitro selection we isolated three L-RNA-cleaving DNAzymes from a random-sequence DNA pool. The most active DNAzyme exhibits a catalytic rate constant ~3 min-1 and has a structure that contains a kissing loop, a structural motif that has never been observed with D-RNA-cleaving DNAzymes. Furthermore we have used this DNAzyme and a well-known ATP-binding DNA aptamer to construct an aptazyme sensor and demonstrated that this biosensor can achieve ATP detection in biological samples that contain RNases. The current work lays the foundation for exploring RNA-cleaving DNAzymes for engineering biosensors that are compatible with complex biological samples.
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Affiliation(s)
- Kha Tram
- Department of Chemistry and Chemical Biology, McMaster University, Hamilton, Ontario, Canada
| | - Jiaji Xia
- Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada
| | - Rachel Gysbers
- Department of Biochemistry and Biomedical Sciences and Origins Institute, McMaster University, Hamilton, Ontario, Canada
| | - Yingfu Li
- Department of Biochemistry and Biomedical Sciences, Department of Chemistry and Chemical Biology, and Origins Institute, McMaster University, Hamilton, Ontario, Canada
- * E-mail:
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55
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Zhang Y, Jiang H, Wang X. Cytidine-stabilized gold nanocluster as a fluorescence turn-on and turn-off probe for dual functional detection of Ag+ and Hg2+. Anal Chim Acta 2015; 870:1-7. [DOI: 10.1016/j.aca.2015.01.016] [Citation(s) in RCA: 102] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2014] [Revised: 01/06/2015] [Accepted: 01/12/2015] [Indexed: 11/29/2022]
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56
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Li N, Su X, Lu Y. Nanomaterial-based biosensors using dual transducing elements for solution phase detection. Analyst 2015; 140:2916-43. [PMID: 25763412 DOI: 10.1039/c4an02376e] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Biosensors incorporating nanomaterials have demonstrated superior performance compared to their conventional counterparts. Most reported sensors use nanomaterials as a single transducer of signals, while biosensor designs using dual transducing elements have emerged as new approaches to further improve overall sensing performance. This review focuses on recent developments in nanomaterial-based biosensors using dual transducing elements for solution phase detection. The review begins with a brief introduction of the commonly used nanomaterial transducers suitable for designing dual element sensors, including quantum dots, metal nanoparticles, upconversion nanoparticles, graphene, graphene oxide, carbon nanotubes, and carbon nanodots. This is followed by the presentation of the four basic design principles, namely Förster Resonance Energy Transfer (FRET), Amplified Fluorescence Polarization (AFP), Bio-barcode Assay (BCA) and Chemiluminescence (CL), involving either two kinds of nanomaterials, or one nanomaterial and an organic luminescent agent (e.g. organic dyes, luminescent polymers) as dual transducers. Biomolecular and chemical analytes or biological interactions are detected by their control of the assembly and disassembly of the two transducing elements that change the distance between them, the size of the fluorophore-containing composite, or the catalytic properties of the nanomaterial transducers, among other property changes. Comparative discussions on their respective design rules and overall performances are presented afterwards. Compared with the single transducer biosensor design, such a dual-transducer configuration exhibits much enhanced flexibility and design versatility, allowing biosensors to be more specifically devised for various purposes. The review ends by highlighting some of the further development opportunities in this field.
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Affiliation(s)
- Ning Li
- Institute of Materials Research and Engineering, Agency for Science, Technology and Research (A*STAR), 3 Research Link, 117602 Singapore.
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Fan H, Zhao Z, Yan G, Zhang X, Yang C, Meng H, Chen Z, Liu H, Tan W. A Smart DNAzyme-MnO2Nanosystem for Efficient Gene Silencing. Angew Chem Int Ed Engl 2015; 54:4801-5. [DOI: 10.1002/anie.201411417] [Citation(s) in RCA: 214] [Impact Index Per Article: 21.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2014] [Revised: 01/23/2015] [Indexed: 11/10/2022]
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58
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Fan H, Zhao Z, Yan G, Zhang X, Yang C, Meng H, Chen Z, Liu H, Tan W. A Smart DNAzyme-MnO2Nanosystem for Efficient Gene Silencing. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201411417] [Citation(s) in RCA: 85] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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59
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Liu P, Sun S, Guo X, Yang X, Huang J, Wang K, Wang Q, Liu J, He L. Competitive host-guest interaction between β-cyclodextrin polymer and pyrene-labeled probes for fluorescence analyses. Anal Chem 2015; 87:2665-71. [PMID: 25622804 DOI: 10.1021/ac503301q] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
We developed a novel homogeneous fluorescence analysis based on a novel competitive host-guest interaction (CHGI) mechanism between β-cyclodextrin polymer (polyβ CD) and pyrene-labeled probe for biochemical assay. Pyrene labeling with oligonucleotide strands can be recruited and reside in lipophilic cavities of polyβ CD. This altered lipophilic microenvironment provides favored polarity for enhanced quantum efficiencies and extraordinarily increases the luminescence intensity of pyrene. However, with addition of complementary DNA, the pyrene-labeled probe formed double-strand DNA to hinder pyrene from entering the cavities of polyβ CD. The release of pyrene from polyβ CD, which are followed by fluorescence extinguishing, will provide the clear signal turn-off in the presence of target DNA. We also introduced Exodeoxyribonuclease I (Exo I) and Exodeoxyribonuclease III (Exo III) to improve the sensitivity of this system, and the following product of cleavage reaction, pyrene-nucleotide, could more easily host-guest interact with polyβ CD and emit stronger fluorescence than pyrene-labeled probe. In addition, the successful detection of adenosine is also demonstrated by using the similar sensing scheme. Although this scheme might be easily interfered by some biomolecules in the real test sample, it holds promising potential for detecting a broad range of other types of aptamer-binding chemicals and biomolecules.
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Affiliation(s)
- Pei Liu
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province, Hunan University , Changsha, Hunan 410082, China
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60
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Wang F, Liu S, Lin M, Chen X, Lin S, Du X, Li H, Ye H, Qiu B, Lin Z, Guo L, Chen G. Colorimetric detection of microcystin-LR based on disassembly of orient-aggregated gold nanoparticle dimers. Biosens Bioelectron 2015; 68:475-480. [PMID: 25621999 DOI: 10.1016/j.bios.2015.01.037] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2014] [Revised: 01/10/2015] [Accepted: 01/16/2015] [Indexed: 12/22/2022]
Abstract
Recently we demonstrated oriented formation of gold nanoparticle (AuNP) dimers for ultrasensitive sensing oligonucleotides (J. Am. Chem. Soc. 2013, 135, 12338). Herein, we investigate the reverse process of this sensing mechanism using target analytes to disassemble the orient-aggregated AuNP dimers. This enables us to expand the analytes from oligonucleotides to other molecules, e.g. highly sensitive and selective determination of microcystin-LR (MC-LR) is selected for a demonstration in this work. Aptamers specific to the target molecules are used as linkers to prepare the AuNP dimers. In the presence of the target molecule, the aptamer changes its structure to bind the target molecule. Thus the pre-formed AuNP dimers are disassembled. As a result, the solution color is changed from blue to red. This sensing design retains the advantages of the previously developed sensors based on target molecules guided formation of AuNP dimers, e.g. the overwhelming sensitivity and stability comparing with those non-oriented sensors based on the formation of large aggregates, with the additional advantages as follows: 1) the target molecules are expanded from oligonucleotides to arbitrary molecules that can specifically bind to aptamers; 2) the color change is completed within 5 min, while the previous sensor based on the formation of AuNP dimers cost ~1 hour to obtain stable responses.
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Affiliation(s)
- Fangfang Wang
- Institute of Nanomedicine and Nanobiosensing, Ministry of Education Key Laboratory of Analysis and Detection Technology for Food Safety; College of Chemistry, Fuzhou University, Fuzhou 350116, China
| | - Shuzhen Liu
- Institute of Nanomedicine and Nanobiosensing, Ministry of Education Key Laboratory of Analysis and Detection Technology for Food Safety; College of Chemistry, Fuzhou University, Fuzhou 350116, China
| | - Mingxia Lin
- Institute of Nanomedicine and Nanobiosensing, Ministry of Education Key Laboratory of Analysis and Detection Technology for Food Safety; College of Chemistry, Fuzhou University, Fuzhou 350116, China
| | - Xing Chen
- Institute of Nanomedicine and Nanobiosensing, Ministry of Education Key Laboratory of Analysis and Detection Technology for Food Safety; College of Chemistry, Fuzhou University, Fuzhou 350116, China
| | - Shiru Lin
- Institute of Nanomedicine and Nanobiosensing, Ministry of Education Key Laboratory of Analysis and Detection Technology for Food Safety; College of Chemistry, Fuzhou University, Fuzhou 350116, China
| | - Xiazhen Du
- Institute of Nanomedicine and Nanobiosensing, Ministry of Education Key Laboratory of Analysis and Detection Technology for Food Safety; College of Chemistry, Fuzhou University, Fuzhou 350116, China
| | - He Li
- Institute of Nanomedicine and Nanobiosensing, Ministry of Education Key Laboratory of Analysis and Detection Technology for Food Safety; College of Chemistry, Fuzhou University, Fuzhou 350116, China
| | - Hongbin Ye
- Institute of Nanomedicine and Nanobiosensing, Ministry of Education Key Laboratory of Analysis and Detection Technology for Food Safety; College of Chemistry, Fuzhou University, Fuzhou 350116, China
| | - Bin Qiu
- Institute of Nanomedicine and Nanobiosensing, Ministry of Education Key Laboratory of Analysis and Detection Technology for Food Safety; College of Chemistry, Fuzhou University, Fuzhou 350116, China
| | - Zhenyu Lin
- Institute of Nanomedicine and Nanobiosensing, Ministry of Education Key Laboratory of Analysis and Detection Technology for Food Safety; College of Chemistry, Fuzhou University, Fuzhou 350116, China
| | - Longhua Guo
- Institute of Nanomedicine and Nanobiosensing, Ministry of Education Key Laboratory of Analysis and Detection Technology for Food Safety; College of Chemistry, Fuzhou University, Fuzhou 350116, China.
| | - Guonan Chen
- Institute of Nanomedicine and Nanobiosensing, Ministry of Education Key Laboratory of Analysis and Detection Technology for Food Safety; College of Chemistry, Fuzhou University, Fuzhou 350116, China
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61
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Perets EA, Indrasekara ASDS, Kurmis A, Atlasevich N, Fabris L, Arslanoglu J. Carboxy-terminated immuno-SERS tags overcome non-specific aggregation for the robust detection and localization of organic media in artworks. Analyst 2015; 140:5971-80. [DOI: 10.1039/c5an00817d] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Surface-enhanced Raman scattering (SERS) nano-tags with a carboxy-terminated PEG surface coating overcome non-specific aggregation when applied for the immunological detection and localization of proteinaceous binding media in art samples.
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Affiliation(s)
- E. A. Perets
- Department of Scientific Research
- The Metropolitan Museum of Art
- New York
- USA
| | - A. S. D. S. Indrasekara
- Department of Materials Science and Engineering
- Institute for Advanced Materials Devices and Nanotechnology
- Rutgers University
- Piscataway
- USA
| | - A. Kurmis
- Department of Scientific Research
- The Metropolitan Museum of Art
- New York
- USA
| | - N. Atlasevich
- Department of Scientific Research
- The Metropolitan Museum of Art
- New York
- USA
| | - L. Fabris
- Department of Materials Science and Engineering
- Institute for Advanced Materials Devices and Nanotechnology
- Rutgers University
- Piscataway
- USA
| | - J. Arslanoglu
- Department of Scientific Research
- The Metropolitan Museum of Art
- New York
- USA
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62
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Ratnarathorn N, Chailapakul O, Dungchai W. Highly sensitive colorimetric detection of lead using maleic acid functionalized gold nanoparticles. Talanta 2015; 132:613-8. [DOI: 10.1016/j.talanta.2014.10.024] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2014] [Revised: 10/06/2014] [Accepted: 10/10/2014] [Indexed: 11/29/2022]
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63
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Wu P, Yu Y, McGhee CE, Tan LH, Lu Y. Applications of synchrotron-based spectroscopic techniques in studying nucleic acids and nucleic acid-functionalized nanomaterials. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2014; 26:7849-72. [PMID: 25205057 PMCID: PMC4275547 DOI: 10.1002/adma.201304891] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2013] [Revised: 06/02/2014] [Indexed: 05/22/2023]
Abstract
In this review, we summarize recent progress in the application of synchrotron-based spectroscopic techniques for nucleic acid research that takes advantage of high-flux and high-brilliance electromagnetic radiation from synchrotron sources. The first section of the review focuses on the characterization of the structure and folding processes of nucleic acids using different types of synchrotron-based spectroscopies, such as X-ray absorption spectroscopy, X-ray emission spectroscopy, X-ray photoelectron spectroscopy, synchrotron radiation circular dichroism, X-ray footprinting and small-angle X-ray scattering. In the second section, the characterization of nucleic acid-based nanostructures, nucleic acid-functionalized nanomaterials and nucleic acid-lipid interactions using these spectroscopic techniques is summarized. Insights gained from these studies are described and future directions of this field are also discussed.
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Affiliation(s)
- Peiwen Wu
- Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Yang Yu
- Center of Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Claire E. McGhee
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Li Huey Tan
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Yi Lu
- Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. Center of Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
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64
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Hwang K, Wu P, Kim T, Lei L, Tian S, Wang Y, Lu Y. Photocaged DNAzymes as a general method for sensing metal ions in living cells. Angew Chem Int Ed Engl 2014; 53:13798-802. [PMID: 25314680 PMCID: PMC4297208 DOI: 10.1002/anie.201408333] [Citation(s) in RCA: 158] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2014] [Indexed: 12/29/2022]
Abstract
DNAzymes, which are sequences of DNA with catalytic activity, have been demonstrated as a potential platform for sensing a wide range of metal ions. Despite their significant promise, cellular sensing using DNAzymes has however been difficult, mainly because of the "always-on" mode of first-generation DNAzyme sensors. To overcome this limitation, a photoactivatable (or photocaged) DNAzyme was designed and synthesized, and its application in sensing Zn(II) in living cells was demonstrated. In this design, the adenosine ribonucleotide at the scissile position of the 8-17 DNAzyme was replaced by 2'-O-nitrobenzyl adenosine, rendering the DNAzyme inactive and thus allowing its delivery into cells intact, protected from nonspecific degradation within cells. Irradiation at 365 nm restored DNAzyme activity, thus allowing the temporal control over the sensing activity of the DNAzyme for metal ions. The same strategy was also applied to the GR-5 DNAzyme for the detection of Pb(II), thus demonstrating the possible scope of the method.
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Affiliation(s)
- Kevin Hwang
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Peiwen Wu
- Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Taejin Kim
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Lei Lei
- Department of Bioengineering and Institute of Engineering in Medicine, University of California, San Diego, La Jolla, California, 92093, USA
| | - Shiliang Tian
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Yingxiao Wang
- Department of Bioengineering and Institute of Engineering in Medicine, University of California, San Diego, La Jolla, California, 92093, USA
| | - Yi Lu
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
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65
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Hwang K, Wu P, Kim T, Lei L, Tian S, Wang Y, Lu Y. Photocaged DNAzymes as a General Method for Sensing Metal Ions in Living Cells. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201408333] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Kevin Hwang
- Department of Chemistry, University of Illinois at Urbana‐Champaign, Urbana, IL, 61801 (USA)
| | - Peiwen Wu
- Department of Biochemistry, University of Illinois at Urbana‐Champaign, Urbana, IL, 61801 (USA)
| | - Taejin Kim
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana‐Champaign, Urbana, IL, 61801 (USA)
| | - Lei Lei
- Department of Bioengineering and Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA, 92093 (USA)
| | - Shiliang Tian
- Department of Chemistry, University of Illinois at Urbana‐Champaign, Urbana, IL, 61801 (USA)
| | - Yingxiao Wang
- Department of Bioengineering and Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA, 92093 (USA)
| | - Yi Lu
- Department of Chemistry, University of Illinois at Urbana‐Champaign, Urbana, IL, 61801 (USA)
- Department of Biochemistry, University of Illinois at Urbana‐Champaign, Urbana, IL, 61801 (USA)
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66
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Cheng X, Li S, Zhong Z, Wang S, He P. Carbamodithioate-based dual functional fluorescent probe for Hg(2+) and S(2-). J Fluoresc 2014; 24:1727-33. [PMID: 25263098 DOI: 10.1007/s10895-014-1461-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2014] [Accepted: 09/16/2014] [Indexed: 11/25/2022]
Abstract
Carbamodithioate-based compound T1 was designed and synthesized as a dual-functional probe for Hg(2+) ions and S(2-) anions. The underlying signaling mechanism was intramolecular charge transfer (ICT). It could serve as a direct probe towards Hg(2+) ions through "on-off" fluorescence changes and an indirect probe towards S(2-) anions through "on-off-on" fluorescence changes.
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Affiliation(s)
- Xiaohong Cheng
- Hubei Key Laboratory of Low Dimensional Optoelectronic Materials and Devices, Hubei University of Arts and Science, Xiangyang, 441053, Hubei Province, People's Republic of China,
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67
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Liu GP, Wu YM, Yuan YL, Chai YQ, Wei SQ, Zhang DJ. Manganese(iii)meso-tetrakis(4-N-methylpyridyl)-porphyrin and mediator thionine co-decorated DNA nanowires for sensitive electrochemical monitoring of mercury(ii). RSC Adv 2014. [DOI: 10.1039/c4ra09162k] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
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68
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Du J, Zhu B, Peng X, Chen X. Optical reading of contaminants in aqueous media based on gold nanoparticles. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2014; 10:3461-3479. [PMID: 24578321 DOI: 10.1002/smll.201303256] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2013] [Revised: 12/14/2013] [Indexed: 06/03/2023]
Abstract
With increasing trends of global population growth, urbanization, pollution over-exploitation, and climate change, the safe water supply has become a global issue and is threatening our society in terms of sustainable development. Therefore, there is a growing need for a water-monitoring platform with the capability of rapidness, specificity, low-cost, and robustness. This review summarizes the recent developments in the design and application of gold nanoparticles (AuNPs) based optical assays to detect contaminants in aqueous media with a high performance. First, a brief discussion on the correlation between the optical reading strategy and the optical properties of AuNPs is presented. Then, we summarize the principle behind AuNP-based optical assays to detect different contaminants, such as toxic metal ion, anion, and pesticides, according to different optical reading strategies: colorimetry, scattering, and fluorescence. Finally, the comparison of these assays and the outlook of AuNP-based optical detection are discussed.
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Affiliation(s)
- Jianjun Du
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, 639798, Singapore; State Key Laboratory of Fine Chemicals, Dalian University of Technology, 2 Linggong Road, Dalian, 116024, China
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69
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Zhou Z, Xiang Y, Tong A, Lu Y. Simple and efficient method to purify DNA-protein conjugates and its sensing applications. Anal Chem 2014; 86:3869-75. [PMID: 24605905 PMCID: PMC4004194 DOI: 10.1021/ac4040554] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2013] [Accepted: 03/08/2014] [Indexed: 11/28/2022]
Abstract
DNA-protein conjugates are very useful in analytical chemistry for target recognition and signal amplification. While a number of methods for conjugating DNA with proteins are known, methods for purification of DNA-protein conjugates from reaction mixture containing unreacted proteins are much less investigated. In this work, a simple and efficient approach to purify DNA-invertase conjugates from reaction mixture via a biotin displacement strategy to release desthiobiotinylated DNA-invertase conjugates from streptavidin-coated magnetic beads was developed. The conjugates purified by this approach were utilized for quantitative detection of cocaine and DNA using a personal glucose meter through structure-switching DNA aptamer sensors and competitive DNA hybridization assays, respectively. In both cases, the purified DNA-invertase conjugates showed better performance compared to the same assays using unpurified conjugates. The approach demonstrated here can be further expanded to other DNA and proteins to generate purified DNA-protein conjugates for analytical and other applications.
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Affiliation(s)
- Zhaojuan Zhou
- Department of Chemistry, Key Laboratory
of Bioorganic Phosphorus Chemistry and Chemical Biology (Ministry
of Education), Beijing Key Laboratory for Microanalytical Methods
and Instrumentation, Tsinghua University, Beijing 100084, China
- Department of Chemistry and Beckman Institute
for Advanced Science and Technology, University
of Illinois at Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Yu Xiang
- Department of Chemistry, Key Laboratory
of Bioorganic Phosphorus Chemistry and Chemical Biology (Ministry
of Education), Beijing Key Laboratory for Microanalytical Methods
and Instrumentation, Tsinghua University, Beijing 100084, China
- Department of Chemistry and Beckman Institute
for Advanced Science and Technology, University
of Illinois at Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Aijun Tong
- Department of Chemistry, Key Laboratory
of Bioorganic Phosphorus Chemistry and Chemical Biology (Ministry
of Education), Beijing Key Laboratory for Microanalytical Methods
and Instrumentation, Tsinghua University, Beijing 100084, China
| | - Yi Lu
- Department of Chemistry and Beckman Institute
for Advanced Science and Technology, University
of Illinois at Urbana−Champaign, Urbana, Illinois 61801, United States
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70
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Adsorption of DNA on colloidal Ag nanoparticles: Effects of nanoparticle surface charge, base content and length of DNA. Colloids Surf B Biointerfaces 2014; 116:439-45. [DOI: 10.1016/j.colsurfb.2014.01.023] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2013] [Revised: 12/15/2013] [Accepted: 01/19/2014] [Indexed: 11/22/2022]
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71
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Detection of lead(II) ions with a DNAzyme and isothermal strand displacement signal amplification. Biosens Bioelectron 2014; 53:245-9. [DOI: 10.1016/j.bios.2013.09.055] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2013] [Revised: 09/23/2013] [Accepted: 09/24/2013] [Indexed: 11/20/2022]
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72
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Wang F, Lu CH, Willner I. From cascaded catalytic nucleic acids to enzyme-DNA nanostructures: controlling reactivity, sensing, logic operations, and assembly of complex structures. Chem Rev 2014; 114:2881-941. [PMID: 24576227 DOI: 10.1021/cr400354z] [Citation(s) in RCA: 498] [Impact Index Per Article: 45.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Fuan Wang
- Institute of Chemistry, The Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem , Jerusalem 91904, Israel
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73
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Abstract
Increasing interest in detecting metal ions in many chemical and biomedical fields has created demands for developing sensors and imaging agents for metal ions with high sensitivity and selectivity. This review covers recent progress in DNA-based sensors and imaging agents for metal ions. Through both combinatorial selection and rational design, a number of metal-ion-dependent DNAzymes and metal-ion-binding DNA structures that can selectively recognize specific metal ions have been obtained. By attachment of these DNA molecules with signal reporters such as fluorophores, chromophores, electrochemical tags, and Raman tags, a number of DNA-based sensors for both diamagnetic and paramagnetic metal ions have been developed for fluorescent, colorimetric, electrochemical, and surface Raman detection. These sensors are highly sensitive (with a detection limit down to 11 ppt) and selective (with selectivity up to millions-fold) toward specific metal ions. In addition, through further development to simplify the operation, such as the use of "dipstick tests", portable fluorometers, computer-readable disks, and widely available glucose meters, these sensors have been applied for on-site and real-time environmental monitoring and point-of-care medical diagnostics. The use of these sensors for in situ cellular imaging has also been reported. The generality of the combinatorial selection to obtain DNAzymes for almost any metal ion in any oxidation state and the ease of modification of the DNA with different signal reporters make DNA an emerging and promising class of molecules for metal-ion sensing and imaging in many fields of applications.
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Affiliation(s)
- Yu Xiang
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. Fax: 217-244-3186; Tel: 217-333-2619
| | - Yi Lu
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. Fax: 217-244-3186; Tel: 217-333-2619
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74
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Zhang D, Yin L, Meng Z, Yu A, Guo L, Wang H. A sensitive fluorescence anisotropy method for detection of lead (II) ion by a G-quadruplex-inducible DNA aptamer. Anal Chim Acta 2014; 812:161-7. [PMID: 24491777 DOI: 10.1016/j.aca.2013.12.029] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2013] [Revised: 12/10/2013] [Accepted: 12/24/2013] [Indexed: 12/27/2022]
Abstract
Sensitive and selective detection of Pb(2+) is of great importance to both human health and environmental protection. Here we propose a novel fluorescence anisotropy (FA) approach for sensing Pb(2+) in homogeneous solution by a G-rich thrombin binding aptamer (TBA). The TBA labeled with 6-carboxytetramethylrhodamine (TMR) at the seventh thymine nucleotide was used as a fluorescent probe for signaling Pb(2+). It was found that the aptamer probe had a high FA in the absence of Pb(2+). This is because the rotation of TMR is restricted by intramolecular interaction with the adjacent guanine bases, which results in photoinduced electron transfer (PET). When the aptamer probe binds to Pb(2+) to form G-quadruplex, the intramolecular interaction should be eliminated, resulting in faster rotation of the fluorophore TMR in solution. Therefore, FA of aptamer probe is expected to decrease significantly upon binding to Pb(2+). Indeed, we observed a decrease in FA of aptamer probe upon Pb(2+) binding. Circular dichroism, fluorescence spectra, and fluorescence lifetime measurement were used to verify the reliability and reasonability of the sensing mechanism. By monitoring the FA change of the aptamer probe, we were able to real-time detect binding between the TBA probe and Pb(2+). Moreover, the aptamer probe was exploited as a recognition element for quantification of Pb(2+) in homogeneous solution. The change in FA showed a linear response to Pb(2+) from 10 nM to 2.0 μM, with 1.0 nM limit of detection. In addition, this sensing system exhibited good selectivity for Pb(2+) over other metal ions. The method is simple, quick and inherits the advantages of aptamer and FA.
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Affiliation(s)
- Dapeng Zhang
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China
| | - Lei Yin
- School of Chemical Engineering and Environment, Beijing Institute of Technology, Beijing, 100081, PR China
| | - Zihui Meng
- School of Chemical Engineering and Environment, Beijing Institute of Technology, Beijing, 100081, PR China
| | - Anchi Yu
- Department of Chemistry, Renmin University of China, Beijing, 100872, PR China
| | - Lianghong Guo
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China
| | - Hailin Wang
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China.
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75
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A colorimetric method for highly sensitive and accurate detection of iodide by finding the critical color in a color change process using silver triangular nanoplates. Anal Chim Acta 2013; 798:74-81. [DOI: 10.1016/j.aca.2013.08.037] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2013] [Revised: 08/21/2013] [Accepted: 08/22/2013] [Indexed: 11/20/2022]
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76
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Yang C, Liu L, Zeng T, Yang D, Yao Z, Zhao Y, Wu HC. Highly Sensitive Simultaneous Detection of Lead(II) and Barium(II) with G-Quadruplex DNA in α-Hemolysin Nanopore. Anal Chem 2013; 85:7302-7. [DOI: 10.1021/ac401198d] [Citation(s) in RCA: 100] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Chun Yang
- Key Laboratory for Biomedical Effects of Nanomaterials & Nanosafety, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China
- College of Chemical and Biological Engineering, Changsha University of Science & Technology, Changsha 410004, China
| | - Lei Liu
- Key Laboratory for Biomedical Effects of Nanomaterials & Nanosafety, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China
| | - Tao Zeng
- National Center
for Nanosciences
and Technology of China, Beijing, 100190, China
| | - Daowu Yang
- College of Chemical and Biological Engineering, Changsha University of Science & Technology, Changsha 410004, China
| | - Zhiyi Yao
- Key Laboratory for Biomedical Effects of Nanomaterials & Nanosafety, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China
| | - Yuliang Zhao
- Key Laboratory for Biomedical Effects of Nanomaterials & Nanosafety, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China
- National Center
for Nanosciences
and Technology of China, Beijing, 100190, China
| | - Hai-Chen Wu
- Key Laboratory for Biomedical Effects of Nanomaterials & Nanosafety, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China
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77
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El-Safty SA, Shenashen MA, Shahat A. Tailor-made micro-object optical sensor based on mesoporous pellets for visual monitoring and removal of toxic metal ions from aqueous media. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2013; 9:2288-2296. [PMID: 23359538 DOI: 10.1002/smll.201202407] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2012] [Revised: 11/06/2012] [Indexed: 06/01/2023]
Abstract
Methods for the continuous monitoring and removal of ultra-trace levels of toxic inorganic species (e.g., mercury, copper, and cadmium ions) from aqueous media such as drinking water and biological fluids are essential. In this paper, the design and engineering of a simple, pH-dependent, micro-object optical sensor is described based on mesoporous aluminosilica pellets with an adsorbed dressing receptor (a porphyrinic chelating ligand). This tailor-made optical sensor permits ultra-fast (≤ 60 s), specific, pH-dependent visualization and removal of Cu(2+) , Cd(2+) , and Hg(2+) at sub-picomolar concentrations (∼10(-11) mol dm(-3) ) from aqueous media, including drinking water and a suspension of red blood cells. The acidic active acid sites of the pellets consist of heteroatoms arranged around uniformly shaped pores in 3D nanoscale gyroidal mesostructures densely coated with the chelating ligand. The sensor can be used in batch mode, as well as in a flow-through system in which sampling, target ion recognition and removal, and analysis are integrated in a highly automated and efficient manner. Because the pellets exhibit long-term stability, reproducibility, and versatility over a number of analysis/regeneration cycles, they can be expected to be useful for the fabrication of inexpensive sensor devices for naked-eye detection of toxic pollutants.
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Affiliation(s)
- Sherif A El-Safty
- National Institute for Materials Science (NIMS), 1-2-1 Sengen, Tsukuba-shi, Ibaraki-ken 05-0047, Japan.
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78
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Grzelczak M, Liz-Marzán LM. Colloidal nanoplasmonics: from building blocks to sensing devices. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2013; 29:4652-4663. [PMID: 23421758 DOI: 10.1021/la4001544] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Nanoplasmonics is a rapidly developing field of research and technology that is based on the ability of small metal particles to interact strongly with light of wavelength significantly larger than their size. The development of nanoplasmonics has been closely associated with the application of colloid science to the controlled growth of metal nanocrystals in solution and to directing the self-assembly of such nanocrystals into organized arrays with enhanced collective properties. Engineering the morphology and the assembly of metal nanoparticles is a key step toward the fabrication of devices with great potential in detection and diagnosis as well as in a wide variety of other fields. In this Feature Article, we provide an overview of the recent work in our laboratory, which in our view somehow reflects the evolution of the field itself and provides guidelines for future research.
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Affiliation(s)
- Marek Grzelczak
- Bionanoplasmonics Laboratory, CIC biomaGUNE, Donostia-San Sebastián, Spain
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79
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Xiong S, Wang M, Cai D, Li Y, Gu N, Wu Z. Electrochemical Detection of Pb(II) by Glassy Carbon Electrode Modified with Amine-Functionalized Magnetite Nanoparticles. ANAL LETT 2013. [DOI: 10.1080/00032719.2012.747094] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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80
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Li CL, Huang CC, Chen WH, Chiang CK, Chang HT. Peroxidase mimicking DNA-gold nanoparticles for fluorescence detection of the lead ions in blood. Analyst 2013; 137:5222-8. [PMID: 23032966 DOI: 10.1039/c2an35599j] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Oligonucleotide (T30695) modified gold nanoparticles (T30695-Au NPs) have been prepared and employed for quantification of lead ions (Pb(2+)) in blood. The detection of Pb(2+) ions is through the formation of Au-Pb alloys and oligonucleotide-Pb(2+) complexes that catalyze the H(2)O(2)-mediated oxidation of non-fluorescent Amplex UltraRed (AUR) to form a highly fluorescent oxidized AUR product. Surface-assisted laser desorption/ionization time-of-flight mass spectrometry (SALDI-TOF MS) and inductively coupled plasma mass spectrometry (ICP-MS) revealed the formation of Au-Pb alloys on the surfaces of the 40T30695-Au NPs (i.e., the system featuring 40 molecules of T30695 per Au NP) in the presence of Pb(2+) ions, leading to increased catalytic activity for the H(2)O(2)-mediated oxidation of AUR. The fluorescence intensity (excitation/emission maxima: ca. 540/584 nm) of the oxidized AUR product is proportional to the concentration of Pb(2+) ions over the range 0.1-100 nM, with a linear correlation (R(2) = 0.99). The 40T30695-Au NP/AUR probe is highly selective toward Pb(2+) ions (by at least 200-fold over other tested metal ions). The 40T30695-Au NPs/AUR probe provided limits of detection (LOD, at a signal-to-noise ratio 3) for Pb(2+) ions of 0.05 and 0.1 nM, in Tris-acetate solution (5 mM, pH 8.0) without and with salt (150 mM NaCl, 5 mM KCl, 1 mM MgCl(2), and 1 mM CaCl(2)), respectively. Without conducting tedious sample pretreatment, the approach allows detection of Pb(2+) ions in blood samples, showing the potential of the 40T30695-Au NPs/AUR assay for on-site and real-time detection of Pb(2+) ions in biological samples.
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Affiliation(s)
- Chi-Lin Li
- Department of Chemistry, National Taiwan University, 1, Section 4, Roosevelt Road, Taipei, 10617, Taiwan
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81
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The pH-dependent interaction of silver nanoparticles and hydrogen peroxide: A new platform for visual detection of iodide with ultra-sensitivity. Talanta 2013; 107:146-53. [DOI: 10.1016/j.talanta.2012.12.029] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2012] [Revised: 12/14/2012] [Accepted: 12/21/2012] [Indexed: 11/17/2022]
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82
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Aghayeva UF, Nikitin MP, Lukash SV, Deyev SM. Denaturation-resistant bifunctional colloidal superstructures assembled via the proteinaceous barnase-barstar interface. ACS NANO 2013; 7:950-961. [PMID: 23351072 DOI: 10.1021/nn302546v] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
To date, a number of biomolecule-mediated nanoparticle self-assembly systems have been developed that are amenable to controllable disassembly under relatively gentle conditions. However, for some applications such as design of self-assembled multifunctional theragnostic agents, high stability of the assembled structures can be of primary importance. Here, we report extraordinarily high durability of protein-assisted nanoparticle self-assembly systems yielding bifunctional colloidal superstructures resistant to extreme denaturing conditions intolerable for most proteins (e.g., high concentrations of chaotropic agents, high temperature). Among the tested systems (barnase-barstar (BBS), streptavidin-biotin, antibody-antigen, and protein A-immunoglobulin), the BBS is notable due to the combination of its high resistance to severe chemical perturbation and unique advantages offered by genetic engineering of this entirely protein-based system. Comparison of the self-assembly systems shows that whereas in all cases the preassembled structures proved essentially resistant to extreme conditions, the ability of the complementary biomolecular pairs to mediate assembly of the initial biomolecule-particle conjugates differs substantially in these conditions.
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Affiliation(s)
- Ulkar F Aghayeva
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16/10 Miklukho-Maklaya Street, Moscow 117997, Russia
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83
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Zhang Y, Leng Y, Miao L, Xin J, Wu A. The colorimetric detection of Pb2+ by using sodium thiosulfate and hexadecyl trimethyl ammonium bromide modified gold nanoparticles. Dalton Trans 2013; 42:5485-90. [PMID: 23426019 DOI: 10.1039/c3dt32532f] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A simple, rapid colorimetric detection method for Pb(2+) in aqueous solution has been developed by using sodium thiosulfate (Na2S2O3) and hexadecyl trimethyl ammonium bromide (CTAB) modified gold nanoparticles (Au NPs). Na2S2O3 was added into the Au NP solution and thiosulfate ions (S2O3(2-)) were adsorbed on the surface of the Au NPs due to electrostatic interactions. Au atoms on the surface of the Au NPs were then oxidized to Au(i) by the O2 that existed in the solution in presence of thiosulfate. The addition of Pb(2+) (the final concentration was lower than 10 μM), accelerated the leaching of the Au NPs, and Pb-Au alloys also formed on the surface of the Au NPs. There was an obvious decrease in the surface plasmon resonance (SPR) absorption of the Au NPs. The lowest concentration for Pb(2+) that could be detected by the naked eye was 0.1 μM and using UV-vis spectroscopy was 40 nM. This is lower than the lead toxic level defined by the US Environmental Protection Agency (US EPA), which is 75 nM. In this method, CTAB, as a stabilizing agent for Au NPs, can accelerate the adsorption of S2O3(2-) on the surface of the Au NPs, which shortened the detection time to within 30 min. Moreover, this detection method is simple, cheap and environmentally friendly.
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Affiliation(s)
- Yujie Zhang
- Key Laboratory of Magnetic Materials and Devices, and Division of Functional Materials and Nanodevices, Ningbo Institute of Materials Technology and Engineering (NIMTE), Chinese Academy of Sciences, Ningbo, 315201, China
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84
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Placido T, Aragay G, Pons J, Comparelli R, Curri ML, Merkoçi A. Ion-directed assembly of gold nanorods: a strategy for mercury detection. ACS APPLIED MATERIALS & INTERFACES 2013; 5:1084-1092. [PMID: 23305173 DOI: 10.1021/am302870b] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Water-soluble gold nanorods (Au NRs) have been functionalized with an N-alkylaminopyrazole ligand, 1-[2-(octylamino)ethyl]-3,5-diphenylpyrazole (PyL), that has been demonstrated able to coordinate heavy metal ions. The N-alkylaminopyrazole functionalized Au NRs have been characterized by electron microscopy and spectroscopic investigation and tested in optical detection experiments of different ions, namely, Zn(2+), Cd(2+), Hg(2+), Cu(2+), Pb(2+), and As(3+). In particular, the exposure of the functionalized NRs to increasing amounts of Hg(2+) ions has resulted in a gradual red-shift and broadening of the longitudinal plasmon band, up to 900 nm. Interestingly, a significantly different response has been recorded for the other tested ions. In fact, no significant shift in the longitudinal plasmon band has been observed for any of them, while a nearly linear reduction in the plasmon band intensity versus ion concentration in solution has been detected. The very high sensitivity for Hg(2+) with respect to other investigated ions, with a limit of detection of 3 ppt, demonstrates that the functionalization of Au NRs with PyL is a very effective method to be implemented in a reliable colorimetric sensing device, able to push further down the detection limit achieved by applying similar strategies to spherical Au NPs.
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Affiliation(s)
- Tiziana Placido
- CNR-IPCF Istituto per i Processi Chimici e Fisici, Sez. Bari, c/o Dip. Chimica Via Orabona 4, 70126, Bari, Italy
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85
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Valentini P, Pompa PP. Gold nanoparticles for naked-eye DNA detection: smart designs for sensitive assays. RSC Adv 2013. [DOI: 10.1039/c3ra43729a] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
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86
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Xiang Y, Wu P, Tan LH, Lu Y. DNAzyme-functionalized gold nanoparticles for biosensing. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2013; 140:93-120. [PMID: 24026635 DOI: 10.1007/10_2013_242] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Recent progress in using DNAzyme-functionalized gold nanoparticles (AuNPs) for biosensing is summarized in this chapter. A variety of methods, including those for attaching DNA on AuNPs, detecting metal ions and small molecules by DNAzyme-functionalized AuNPs, and intracellular applications of DNAzyme-functionalized AuNPs are discussed. DNAzyme-functionalized AuNPs will increasingly play more important roles in biosensing and many other multidisciplinary applications. This chapter covers the recent advancement in biosensing applications of DNAzyme-functionalized gold nanoparticles, including the detection of metal ions, small molecules, and intracellular imaging.
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Affiliation(s)
- Yu Xiang
- Department of Chemistry and Beckman Institute, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
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87
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Zhou Z, Wei W, Zhang Y, Liu S. DNA-responsive disassembly of AuNP aggregates: influence of nonbase-paired regions and colorimetric DNA detection by exonuclease III aided amplification. J Mater Chem B 2013; 1:2851-2858. [DOI: 10.1039/c3tb20206b] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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88
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Lu F, Doane TL, Zhu JJ, Burda C. Gold nanoparticles for diagnostic sensing and therapy. Inorganica Chim Acta 2012. [DOI: 10.1016/j.ica.2012.05.038] [Citation(s) in RCA: 72] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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89
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Takayose M, Akamatsu K, Nawafune H, Murashima T, Matsui J. Colorimetric Detection of Perfluorooctanoic Acid (PFOA) Utilizing Polystyrene-Modified Gold Nanoparticles. ANAL LETT 2012. [DOI: 10.1080/00032719.2012.696225] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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90
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Gao A, Tang CX, He XW, Yin XB. Electrochemiluminescent lead biosensor based on GR-5 lead-dependent DNAzyme for Ru(phen)3(2+) intercalation and lead recognition. Analyst 2012; 138:263-8. [PMID: 23120751 DOI: 10.1039/c2an36398d] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
An electrochemiluminescent (ECL) lead biosensor was developed based on GR-5 lead-dependent DNAzyme for lead recognition and intercalated ruthenium tris(1,10-phenanthroline) (Ru(phen)(3)(2+)) as the ECL probe. The thiol-modified substrate was first immobilized on the surface of the gold electrode via gold-sulfur self-assembly. Subsequently, the hybridization of DNAzyme and its substrate and the automatic intercalation of Ru(phen)(3)(2+) proceeded. Intercalated Ru(phen)(3)(2+) can transfer electrons through double-stranded DNA to the electrode and its electrochemiluminescence was excited with a potential step using tripropylamine as the coreactant. In the presence of lead, the substrate cleaves at the scissile ribo-adenine into two fragments. The dissociation of DNAzyme occurs, leading to the releasing of intercalated Ru(phen)(3)(2+) accompanied by a decrease in the intensity of electrochemiluminescence. A quantity of lead can be calculated from this decrease. The biosensor is highly sensitive and specific, along with an ultra-low limit of detection of 0.9 pM and a dynamic range from 2 to 1000 pM. It enables analysis of trace amounts of lead in serum samples. The combination of the intercalated-Ru(phen)(3)(2+) ECL probe and the cofactor-dependent DNAzyme may push the performance of cofactor-sensing tactics to the extreme.
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Affiliation(s)
- Ai Gao
- State Key Laboratory of Medicinal Chemical Biology, College of Chemistry, Nankai University, Tianjin, 300071, P.R. China
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91
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Drescher S, Hempel G, Binder WH, Dobner B, Blume A, Meister A. Functionalization of bolalipid nanofibers by silicification and subsequent one-dimensional fixation of gold nanoparticles. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2012; 28:11615-11624. [PMID: 22783886 DOI: 10.1021/la302348t] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
In the present work, we describe the successful stabilization of bolalipid nanofibers by sol-gel condensation (silicification) of tetraethoxysilane (TEOS) or 3-mercaptopropyltriethoxysilane (MP-TEOS), respectively, onto the nanofibers. The conditions for an effective and reproducible silicification reaction were determined, and the silicification process was pursued by transmission electron microscopy (TEM). The resulting bolalipid-silica composite nanofibers were characterized by means of differential scanning calorimetry (DSC), TEM, (13)C, and (31)P NMR spectroscopy. Finally, the novel silicified bolalipid nanofibers were used as templates for the fixation of 5 and 2 nm AuNPs, respectively, resulting in one of the rare examples of one-dimensional AuNP arrangements in aqueous suspension.
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Affiliation(s)
- Simon Drescher
- Institute of Chemistry, Physical Chemistry, Martin-Luther-University Halle-Wittenberg, Halle Saale, Germany.
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92
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Singh AK, Kanchanapally R, Fan Z, Senapati D, Ray PC. Synthesis of highly fluorescent water-soluble silver nanoparticles for selective detection of Pb(II) at the parts per quadrillion (PPQ) level. Chem Commun (Camb) 2012; 48:9047-9. [PMID: 22858581 DOI: 10.1039/c2cc34027e] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
This communication reports for the first time the synthesis of water-soluble glutathione protected highly fluorescence (Φ = 0.18) silver nanoparticles for the selective and highly sensitive sensing of Pb(ii) at the parts per quadrillion (PPQ) level.
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Affiliation(s)
- Anant Kumar Singh
- Department of Chemistry and Biochemistry, Jackson State University, Jackson, MS, USA
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93
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Zheng B, Cheng S, Liu W, Lam MHW, Liang H. A simple colorimetric pH alarm constructed from DNA-gold nanoparticles. Anal Chim Acta 2012; 741:106-13. [PMID: 22840711 DOI: 10.1016/j.aca.2012.07.005] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2012] [Revised: 06/30/2012] [Accepted: 07/03/2012] [Indexed: 11/15/2022]
Abstract
Because of their unique characteristics, DNAs have been widely studied for uses in biosensors. In this work, we utilize single-stranded homopolymeric deoxyadenosines (abbreviated as poly (dA)) as recognition elements and gold nanoparticles (abbreviated as AuNPs) as reporter parts for the construction of pH alarms, which are able to produce sharp colorimetric responses upon specific pH thresholds within the range from pH 2 to 4. These biosensors are convenient to prepare and easy to operate. Their pH thresholds for colorimetric response can be easily tuned by changes of DNA strand length, concentration and DNA sequence. With an increase in the number of nucleotide bases per DNA chain while keeping the overall number of nucleotide base in the system constant, the pH threshold can be raised. Increasing the concentration of the single-stranded poly (dA) DNA lowers the pH response threshold. Moreover, as they can sense a range as narrow as a 0.4 pH unit which equals to 2.5 fold [H(+)] change, they can be used as a potential pH alarm for specific pH range.
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Affiliation(s)
- Bin Zheng
- Hefei National Laboratory for Physical Sciences at Microscale, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
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94
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Kim JH, Boote BW, Pham JA, Hu J, Byun H. Thermally tunable catalytic and optical properties of gold-hydrogel nanocomposites. NANOTECHNOLOGY 2012; 23:275606. [PMID: 22710608 DOI: 10.1088/0957-4484/23/27/275606] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
We have developed a very simple approach for preparing physically embedded gold cores in a temperature-responsive hydrogel polymer nanoparticle under fluorescent light irradiation. The complete encapsulation of the multiple gold core nanoparticles is confirmed by the catalytic reduction of 4-nitrophenol, whose reactivity is significantly retarded above the lower critical solution temperature (LSCT) due to the deswelled polymer structure; its increased hydrophobicity slows the access of hydrophilic reactants to the cores. Since these gold cores are physically embedded in the polymer nanoparticles, further growth of the cores is reliably achieved in situ under light irradiation. Interestingly, the resulting composite nanoparticles exhibit reversible solution color changes as well as absorption bands from the visible to near-IR regions below and above the LSCT.
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Affiliation(s)
- Jun-Hyun Kim
- Department of Chemistry, Illinois State University, Normal, IL 61790-4160, USA.
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95
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Saha K, Agasti SS, Kim C, Li X, Rotello VM. Gold nanoparticles in chemical and biological sensing. Chem Rev 2012; 112:2739-79. [PMID: 22295941 PMCID: PMC4102386 DOI: 10.1021/cr2001178] [Citation(s) in RCA: 2834] [Impact Index Per Article: 218.0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Krishnendu Saha
- Department of Chemistry, University of Massachusetts Amherst, 710 North Pleasant Street, Amherst, MA 01003, USA
| | - Sarit S. Agasti
- Department of Chemistry, University of Massachusetts Amherst, 710 North Pleasant Street, Amherst, MA 01003, USA
| | - Chaekyu Kim
- Department of Chemistry, University of Massachusetts Amherst, 710 North Pleasant Street, Amherst, MA 01003, USA
| | - Xiaoning Li
- Department of Chemistry, University of Massachusetts Amherst, 710 North Pleasant Street, Amherst, MA 01003, USA
| | - Vincent M. Rotello
- Department of Chemistry, University of Massachusetts Amherst, 710 North Pleasant Street, Amherst, MA 01003, USA
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96
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Fujita M, Katafuchi Y, Ito K, Kanayama N, Takarada T, Maeda M. Structural study on gold nanoparticle functionalized with DNA and its non-cross-linking aggregation. J Colloid Interface Sci 2012; 368:629-35. [DOI: 10.1016/j.jcis.2011.11.021] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2011] [Revised: 11/08/2011] [Accepted: 11/09/2011] [Indexed: 10/15/2022]
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97
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Xu H, Liu B, Chen Y. A colorimetric method for the determination of lead(II) ions using gold nanoparticles and a guanine-rich oligonucleotide. Mikrochim Acta 2012. [DOI: 10.1007/s00604-011-0744-7] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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98
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Cheng X, Li S, Jia H, Zhong A, Zhong C, Feng J, Qin J, Li Z. Fluorescent and Colorimetric Probes for Mercury(II): Tunable Structures of Electron Donor and π-Conjugated Bridge. Chemistry 2012; 18:1691-9. [DOI: 10.1002/chem.201102376] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2011] [Indexed: 11/10/2022]
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99
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Liu M, Lou X, Du J, Guan M, Wang J, Ding X, Zhao J. DNAzyme-based fluorescent microarray for highly selective and sensitive detection of lead(ii). Analyst 2012; 137:70-2. [DOI: 10.1039/c1an15633k] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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100
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Lee JH, Wang Z, Lu Y. DNAzyme-Based Sensing for Metal Ions in Ocean Platform. SPRINGER PROTOCOLS HANDBOOKS 2012. [DOI: 10.1007/978-1-61779-915-0_5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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