51
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Fu Z, Liu W, Huang C, Mei T. A Review of Performance Prediction Based on Machine Learning in Materials Science. NANOMATERIALS (BASEL, SWITZERLAND) 2022; 12:nano12172957. [PMID: 36079994 PMCID: PMC9457802 DOI: 10.3390/nano12172957] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Revised: 08/07/2022] [Accepted: 08/24/2022] [Indexed: 05/11/2023]
Abstract
With increasing demand in many areas, materials are constantly evolving. However, they still have numerous practical constraints. The rational design and discovery of new materials can create a huge technological and social impact. However, such rational design and discovery require a holistic, multi-stage design process, including the design of the material composition, material structure, material properties as well as process design and engineering. Such a complex exploration using traditional scientific methods is not only blind but also a huge waste of time and resources. Machine learning (ML), which is used across data to find correlations in material properties and understand the chemical properties of materials, is being considered a new way to explore the materials field. This paper reviews some of the major recent advances and applications of ML in the field of properties prediction of materials and discusses the key challenges and opportunities in this cross-cutting area.
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Affiliation(s)
- Ziyang Fu
- School of Computer Science and Information Engineering, Hubei University, Wuhan 430062, China
- Hubei Software Engineering Technology Research Center, Wuhan 430062, China
- Hubei Engineering Research Center for Smart Government and Artificial Intelligence Application, Wuhan 430062, China
| | - Weiyi Liu
- School of Materials Science and Engineering, Hubei University, Wuhan 430062, China
| | - Chen Huang
- School of Computer Science and Information Engineering, Hubei University, Wuhan 430062, China
- Hubei Software Engineering Technology Research Center, Wuhan 430062, China
- Hubei Engineering Research Center for Smart Government and Artificial Intelligence Application, Wuhan 430062, China
- Correspondence: (C.H.); (T.M.)
| | - Tao Mei
- School of Materials Science and Engineering, Hubei University, Wuhan 430062, China
- Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, Wuhan 430062, China
- Key Laboratory for the Green Preparation and Application of Functional Materials, Wuhan 430062, China
- Correspondence: (C.H.); (T.M.)
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52
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Majumdar S, Roy AK. Recent Advances in Cartesian-Grid DFT in Atoms and Molecules. Front Chem 2022; 10:926916. [PMID: 35936092 PMCID: PMC9354079 DOI: 10.3389/fchem.2022.926916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Accepted: 06/09/2022] [Indexed: 11/30/2022] Open
Abstract
In the past several decades, density functional theory (DFT) has evolved as a leading player across a dazzling variety of fields, from organic chemistry to condensed matter physics. The simple conceptual framework and computational elegance are the underlying driver for this. This article reviews some of the recent developments that have taken place in our laboratory in the past 5 years. Efforts are made to validate a viable alternative for DFT calculations for small to medium systems through a Cartesian coordinate grid- (CCG-) based pseudopotential Kohn-Sham (KS) DFT framework using LCAO-MO ansatz. In order to legitimize its suitability and efficacy, at first, electric response properties, such as dipole moment ( μ ), static dipole polarizability ( α ), and first hyperpolarizability ( β ), are calculated. Next, we present a purely numerical approach in CCG for proficient computation of exact exchange density contribution in certain types of orbital-dependent density functionals. A Fourier convolution theorem combined with a range-separated Coulomb interaction kernel is invoked. This takes motivation from a semi-numerical algorithm, where the rate-deciding factor is the evaluation of electrostatic potential. Its success further leads to a systematic self-consistent approach from first principles, which is desirable in the development of optimally tuned range-separated hybrid and hyper functionals. Next, we discuss a simple, alternative time-independent DFT procedure, for computation of single-particle excitation energies, by means of "adiabatic connection theorem" and virial theorem. Optical gaps in organic chromophores, dyes, linear/non-linear PAHs, and charge transfer complexes are faithfully reproduced. In short, CCG-DFT is shown to be a successful route for various practical applications in electronic systems.
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Affiliation(s)
| | - Amlan K. Roy
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, India
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53
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Duan C, Ladera AJ, Liu JCL, Taylor MG, Ariyarathna IR, Kulik HJ. Exploiting Ligand Additivity for Transferable Machine Learning of Multireference Character across Known Transition Metal Complex Ligands. J Chem Theory Comput 2022; 18:4836-4845. [PMID: 35834742 DOI: 10.1021/acs.jctc.2c00468] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Accurate virtual high-throughput screening (VHTS) of transition metal complexes (TMCs) remains challenging due to the possibility of high multireference (MR) character that complicates property evaluation. We compute MR diagnostics for over 5,000 ligands present in previously synthesized octahedral mononuclear transition metal complexes in the Cambridge Structural Database (CSD). To accomplish this task, we introduce an iterative approach for consistent ligand charge assignment for ligands in the CSD. Across this set, we observe that the MR character correlates linearly with the inverse value of the averaged bond order over all bonds in the molecule. We then demonstrate that ligand additivity of the MR character holds in TMCs, which suggests that the TMC MR character can be inferred from the sum of the MR character of the ligands. Encouraged by this observation, we leverage ligand additivity and develop a ligand-derived machine learning representation to train neural networks to predict the MR character of TMCs from properties of the constituent ligands. This approach yields models with excellent performance and superior transferability to unseen ligand chemistry and compositions.
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Affiliation(s)
- Chenru Duan
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.,Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Adriana J Ladera
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Julian C-L Liu
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Michael G Taylor
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Isuru R Ariyarathna
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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54
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Grotjahn R, Kaupp M. A Look at Real‐World Transition‐Metal Thermochemistry and Kinetics with Local Hybrid Functionals. Isr J Chem 2022. [DOI: 10.1002/ijch.202200021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Robin Grotjahn
- Technische Universität Berlin Institut für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7 Straße des 17. Juni 135 D-10623 Berlin Germany
| | - Martin Kaupp
- Technische Universität Berlin Institut für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7 Straße des 17. Juni 135 D-10623 Berlin Germany
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55
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Bryenton KR, Adeleke AA, Dale SG, Johnson ER. Delocalization error: The greatest outstanding challenge in density‐functional theory. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1631] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Kyle R. Bryenton
- Department of Physics and Atmospheric Science Dalhousie University Halifax Nova Scotia Canada
| | | | - Stephen G. Dale
- Queensland Micro‐ and Nanotechnology Centre Griffith University Nathan Queensland Australia
| | - Erin R. Johnson
- Department of Physics and Atmospheric Science Dalhousie University Halifax Nova Scotia Canada
- Department of Chemistry Dalhousie University Halifax Nova Scotia Canada
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56
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Janesko BG. Systematically Improvable Generalization of Self-Interaction Corrected Density Functional Theory. J Phys Chem Lett 2022; 13:5698-5702. [PMID: 35709503 DOI: 10.1021/acs.jpclett.2c01359] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Perdew-Zunger self-interaction correction (PZSIC) reintroduces an exact constraint to approximate density functional theory (DFT). However, PZSIC can paradoxically degrade performance, and standard DFT approximations (with or without PZSIC) are not systematically improvable. We use the adiabatic projection formalism (Janesko, B. G. J. Chem. Phys. 2022, 156, 014111, https://doi.org/10.1063/5.0076144) to derive PZSIC in terms of a reference system experiencing only electron self-interaction. Generalization to a "self-and-some-others" interaction introduces correlation into the reference system, systematically bridging from PZSIC to exact wave function theory without the double counting of correlation. Minimal active spaces accurately treat nearly one electron, near-equilibrium, and strongly correlated model systems at modest computational expense.
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Affiliation(s)
- Benjamin G Janesko
- Department of Chemistry & Biochemistry, Texas Christian University, 2800 S. University Drive, Fort Worth, Texas 76129, United States
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57
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Rana B, Coons MP, Herbert JM. Detection and Correction of Delocalization Errors for Electron and Hole Polarons Using Density-Corrected DFT. J Phys Chem Lett 2022; 13:5275-5284. [PMID: 35674719 DOI: 10.1021/acs.jpclett.2c01187] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Modeling polaron defects is an important aspect of computational materials science, but the description of unpaired spins in density functional theory (DFT) often suffers from delocalization error. To diagnose and correct the overdelocalization of spin defects, we report an implementation of density-corrected (DC-)DFT and its analytic energy gradient. In DC-DFT, an exchange-correlation functional is evaluated using a Hartree-Fock density, thus incorporating electron correlation while avoiding self-interaction error. Results for an electron polaron in models of titania and a hole polaron in Al-doped silica demonstrate that geometry optimization with semilocal functionals drives significant structural distortion, including the elongation of several bonds, such that subsequent single-point calculations with hybrid functionals fail to afford a localized defect even in cases where geometry optimization with the hybrid functional does localize the polaron. This has significant implications for traditional workflows in computational materials science, where semilocal functionals are often used for structure relaxation. DC-DFT calculations provide a mechanism to detect situations where delocalization error is likely to affect the results.
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Affiliation(s)
- Bhaskar Rana
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
| | - Marc P Coons
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
| | - John M Herbert
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
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58
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Nandy A, Duan C, Kulik HJ. Audacity of huge: overcoming challenges of data scarcity and data quality for machine learning in computational materials discovery. Curr Opin Chem Eng 2022. [DOI: 10.1016/j.coche.2021.100778] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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59
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Sundararaman R, Vigil-Fowler D, Schwarz K. Improving the Accuracy of Atomistic Simulations of the Electrochemical Interface. Chem Rev 2022; 122:10651-10674. [PMID: 35522135 PMCID: PMC10127457 DOI: 10.1021/acs.chemrev.1c00800] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Atomistic simulation of the electrochemical double layer is an ambitious undertaking, requiring quantum mechanical description of electrons, phase space sampling of liquid electrolytes, and equilibration of electrolytes over nanosecond time scales. All models of electrochemistry make different trade-offs in the approximation of electrons and atomic configurations, from the extremes of classical molecular dynamics of a complete interface with point-charge atoms to correlated electronic structure methods of a single electrode configuration with no dynamics or electrolyte. Here, we review the spectrum of simulation techniques suitable for electrochemistry, focusing on the key approximations and accuracy considerations for each technique. We discuss promising approaches, such as enhanced sampling techniques for atomic configurations and computationally efficient beyond density functional theory (DFT) electronic methods, that will push electrochemical simulations beyond the present frontier.
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Affiliation(s)
- Ravishankar Sundararaman
- Department of Materials Science and Engineering, Rensselaer Polytechnic Institute, 110 8th Street, Troy, New York 12180, United States
| | - Derek Vigil-Fowler
- Materials, Chemical, and Computational Science Directorate, National Renewable Energy Laboratory, Golden, Colorado 80401, United States
| | - Kathleen Schwarz
- Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, Maryland 20899, United States
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60
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Duan C, Chu DBK, Nandy A, Kulik HJ. Detection of multi-reference character imbalances enables a transfer learning approach for virtual high throughput screening with coupled cluster accuracy at DFT cost. Chem Sci 2022; 13:4962-4971. [PMID: 35655882 PMCID: PMC9067623 DOI: 10.1039/d2sc00393g] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Accepted: 04/04/2022] [Indexed: 01/08/2023] Open
Abstract
Appropriately identifying and treating molecules and materials with significant multi-reference (MR) character is crucial for achieving high data fidelity in virtual high-throughput screening (VHTS). Despite development of numerous MR diagnostics, the extent to which a single value of such a diagnostic indicates the MR effect on a chemical property prediction is not well established. We evaluate MR diagnostics for over 10 000 transition-metal complexes (TMCs) and compare to those for organic molecules. We observe that only some MR diagnostics are transferable from one chemical space to another. By studying the influence of MR character on chemical properties (i.e., MR effect) that involve multiple potential energy surfaces (i.e., adiabatic spin splitting, ΔE H-L, and ionization potential, IP), we show that differences in MR character are more important than the cumulative degree of MR character in predicting the magnitude of an MR effect. Motivated by this observation, we build transfer learning models to predict CCSD(T)-level adiabatic ΔE H-L and IP from lower levels of theory. By combining these models with uncertainty quantification and multi-level modeling, we introduce a multi-pronged strategy that accelerates data acquisition by at least a factor of three while achieving coupled cluster accuracy (i.e., to within 1 kcal mol-1 MAE) for robust VHTS.
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Affiliation(s)
- Chenru Duan
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA
- Department of Chemistry, Massachusetts Institute of Technology Cambridge MA 02139 USA
| | - Daniel B K Chu
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA
| | - Aditya Nandy
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA
- Department of Chemistry, Massachusetts Institute of Technology Cambridge MA 02139 USA
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA
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61
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Sim E, Song S, Vuckovic S, Burke K. Improving Results by Improving Densities: Density-Corrected Density Functional Theory. J Am Chem Soc 2022; 144:6625-6639. [PMID: 35380807 DOI: 10.1021/jacs.1c11506] [Citation(s) in RCA: 50] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Density functional theory (DFT) calculations have become widespread in both chemistry and materials, because they usually provide useful accuracy at much lower computational cost than wavefunction-based methods. All practical DFT calculations require an approximation to the unknown exchange-correlation energy, which is then used self-consistently in the Kohn-Sham scheme to produce an approximate energy from an approximate density. Density-corrected DFT is simply the study of the relative contributions to the total energy error. In the vast majority of DFT calculations, the error due to the approximate density is negligible. But with certain classes of functionals applied to certain classes of problems, the density error is sufficiently large as to contribute to the energy noticeably, and its removal leads to much better results. These problems include reaction barriers, torsional barriers involving π-conjugation, halogen bonds, radicals and anions, most stretched bonds, etc. In all such cases, use of a more accurate density significantly improves performance, and often the simple expedient of using the Hartree-Fock density is enough. This Perspective explains what DC-DFT is, where it is likely to improve results, and how DC-DFT can produce more accurate functionals. We also outline challenges and prospects for the field.
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Affiliation(s)
- Eunji Sim
- Department of Chemistry, Yonsei University, 50 Yonsei-ro Seodaemun-gu, Seoul 03722, Korea
| | - Suhwan Song
- Department of Chemistry, Yonsei University, 50 Yonsei-ro Seodaemun-gu, Seoul 03722, Korea
| | - Stefan Vuckovic
- Institute for Microelectronics and Microsystems (CNR-IMM), Via Monteroni,Campus Unisalento, 73100 Lecce, Italy.,Department of Chemistry & Pharmaceutical Sciences and Amsterdam Institute of Molecular and Life Sciences (AIMMS), Faculty of Science, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands
| | - Kieron Burke
- Departments of Chemistry and of Physics, University of California, Irvine, California 92697, United States
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62
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Kwon Y, Kim HK, Jeong K. Assessment of Various Density Functional Theory Methods for Finding Accurate Structures of Actinide Complexes. Molecules 2022; 27:molecules27051500. [PMID: 35268601 PMCID: PMC8911565 DOI: 10.3390/molecules27051500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Revised: 02/19/2022] [Accepted: 02/20/2022] [Indexed: 11/30/2022] Open
Abstract
Density functional theory (DFT) is a widely used computational method for predicting the physical and chemical properties of metals and organometals. As the number of electrons and orbitals in an atom increases, DFT calculations for actinide complexes become more demanding due to increased complexity. Moreover, reasonable levels of theory for calculating the structures of actinide complexes are not extensively studied. In this study, 38 calculations, based on various combinations, were performed on molecules containing two representative actinides to determine the optimal combination for predicting the geometries of actinide complexes. Among the 38 calculations, four optimal combinations were identified and compared with experimental data. The optimal combinations were applied to a more complicated and practical actinide compound, the uranyl complex (UO2(2,2′-(1E,1′E)-(2,2-dimethylpropane-1,3-dyl)bis(azanylylidene)(CH3OH)), for further confirmation. The corresponding optimal calculation combination provides a reasonable level of theory for accurately optimizing the structure of actinide complexes using DFT.
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Affiliation(s)
- Youngjin Kwon
- Department of Mechanical System Engineering, Korea Military Academy, Seoul 01805, Korea;
| | - Hee-Kyung Kim
- Nuclear Chemistry Research Team, Korea Atomic Energy Research Institute, Daejeon 34057, Korea;
| | - Keunhong Jeong
- Department of Chemistry, Korea Military Academy, Seoul 01805, Korea
- Correspondence: or or ; Tel.: +82-2-2197-2823
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63
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Moore GJ, Bardagot O, Banerji N. Deep Transfer Learning: A Fast and Accurate Tool to Predict the Energy Levels of Donor Molecules for Organic Photovoltaics. ADVANCED THEORY AND SIMULATIONS 2022. [DOI: 10.1002/adts.202100511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Gareth John Moore
- Department of Chemistry Biochemistry and Pharmaceutical Sciences University of Bern Freiestrasse 3 Bern 3012 Switzerland
| | - Olivier Bardagot
- Department of Chemistry Biochemistry and Pharmaceutical Sciences University of Bern Freiestrasse 3 Bern 3012 Switzerland
| | - Natalie Banerji
- Department of Chemistry Biochemistry and Pharmaceutical Sciences University of Bern Freiestrasse 3 Bern 3012 Switzerland
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64
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Butakova MA, Chernov AV, Kartashov OO, Soldatov AV. Data-Centric Architecture for Self-Driving Laboratories with Autonomous Discovery of New Nanomaterials. NANOMATERIALS (BASEL, SWITZERLAND) 2021; 12:12. [PMID: 35009962 PMCID: PMC8746699 DOI: 10.3390/nano12010012] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Revised: 12/08/2021] [Accepted: 12/16/2021] [Indexed: 06/14/2023]
Abstract
Artificial intelligence (AI) approaches continue to spread in almost every research and technology branch. However, a simple adaptation of AI methods and algorithms successfully exploited in one area to another field may face unexpected problems. Accelerating the discovery of new functional materials in chemical self-driving laboratories has an essential dependence on previous experimenters' experience. Self-driving laboratories help automate and intellectualize processes involved in discovering nanomaterials with required parameters that are difficult to transfer to AI-driven systems straightforwardly. It is not easy to find a suitable design method for self-driving laboratory implementation. In this case, the most appropriate way to implement is by creating and customizing a specific adaptive digital-centric automated laboratory with a data fusion approach that can reproduce a real experimenter's behavior. This paper analyzes the workflow of autonomous experimentation in the self-driving laboratory and distinguishes the core structure of such a laboratory, including sensing technologies. We propose a novel data-centric research strategy and multilevel data flow architecture for self-driving laboratories with the autonomous discovery of new functional nanomaterials.
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65
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Mai S, Holzer M, Andreeva A, González L. Jahn-Teller Effects in a Vanadate-Stabilized Manganese-Oxo Cubane Water Oxidation Catalyst. Chemistry 2021; 27:17066-17077. [PMID: 34643965 PMCID: PMC9298120 DOI: 10.1002/chem.202102539] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Indexed: 12/11/2022]
Abstract
Heuristic rules that allow identifying the preferred mixed-valence isomers and Jahn-Teller axis arrangements in the water oxidation catalyst [(Mn4 O4 )(V4 O13 )(OAc)3 ]n- and its activated form [(Mn4 O4 )(V4 O13 )(OAc)2 (H2 O)(OH)]n- are derived. These rules are based on computing all combinatorially possible mixed-valence isomers and Jahn-Teller axis arrangements of the MnIII atoms, and associate energetic costs with some structural features, like crossings of multiple Jahn-Teller axes, the location of these axes, or the involved ligands. It is found that the different oxidation states localize on different Mn centers, giving rise to clear Jahn-Teller distortions, unlike in previous crystallographic findings where an apparent valence delocalization was found. The low barriers that connect different Jahn-Teller axis arrangements suggest that the system quickly interconverts between them, leading to the observation of averaged bond lengths in the crystal structure. We conclude that the combination of cubane-vanadate bonds that are chemically inert, cubane-acetate/water bonds that can be activated through a Jahn-Teller axis, and low activation barriers for intramolecular rearrangement of the Jahn-Teller axes plays an essential role in the reactivity of this and probably related compounds.
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Affiliation(s)
- Sebastian Mai
- Institute of Theoretical ChemistryFaculty of ChemistryUniversity of ViennaWähringer Straße 171090ViennaAustria
| | - Marcus Holzer
- Institute of Theoretical ChemistryFaculty of ChemistryUniversity of ViennaWähringer Straße 171090ViennaAustria
| | - Anastasia Andreeva
- Institute of Theoretical ChemistryFaculty of ChemistryUniversity of ViennaWähringer Straße 171090ViennaAustria
| | - Leticia González
- Institute of Theoretical ChemistryFaculty of ChemistryUniversity of ViennaWähringer Straße 171090ViennaAustria
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66
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Taylor MG, Nandy A, Lu CC, Kulik HJ. Deciphering Cryptic Behavior in Bimetallic Transition-Metal Complexes with Machine Learning. J Phys Chem Lett 2021; 12:9812-9820. [PMID: 34597514 DOI: 10.1021/acs.jpclett.1c02852] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
We demonstrate an alternative, data-driven approach to uncovering structure-property relationships for the rational design of heterobimetallic transition-metal complexes that exhibit metal-metal bonding. We tailor graph-based representations of the metal-local environment for these complexes for use in multiple linear regression and kernel ridge regression (KRR) models. We curate a set of 28 experimentally characterized complexes to develop a multiple linear regression model for oxidation potentials. We achieve good accuracy (mean absolute error of 0.25 V) and preserve transferability to unseen experimental data with a new ligand structure. We also train a KRR model on a subset of 330 structurally characterized heterobimetallics to predict the degree of metal-metal bonding. This KRR model predicts relative metal-metal bond lengths in the test set to within 5%, and analysis of key features reveals the fundamental atomic contributions (e.g., the valence electron configuration) that most strongly influence the behavior of these complexes. Our work provides guidance for rational bimetallic design, suggesting that properties, including the formal shortness ratio, should be transferable from one period to another.
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Affiliation(s)
- Michael G Taylor
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Aditya Nandy
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Connie C Lu
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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67
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Duan C, Chen S, Taylor MG, Liu F, Kulik HJ. Machine learning to tame divergent density functional approximations: a new path to consensus materials design principles. Chem Sci 2021; 12:13021-13036. [PMID: 34745533 PMCID: PMC8513898 DOI: 10.1039/d1sc03701c] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Accepted: 09/01/2021] [Indexed: 01/17/2023] Open
Abstract
Virtual high-throughput screening (VHTS) with density functional theory (DFT) and machine-learning (ML)-acceleration is essential in rapid materials discovery. By necessity, efficient DFT-based workflows are carried out with a single density functional approximation (DFA). Nevertheless, properties evaluated with different DFAs can be expected to disagree for cases with challenging electronic structure (e.g., open-shell transition-metal complexes, TMCs) for which rapid screening is most needed and accurate benchmarks are often unavailable. To quantify the effect of DFA bias, we introduce an approach to rapidly obtain property predictions from 23 representative DFAs spanning multiple families, “rungs” (e.g., semi-local to double hybrid) and basis sets on over 2000 TMCs. Although computed property values (e.g., spin state splitting and frontier orbital gap) differ by DFA, high linear correlations persist across all DFAs. We train independent ML models for each DFA and observe convergent trends in feature importance, providing DFA-invariant, universal design rules. We devise a strategy to train artificial neural network (ANN) models informed by all 23 DFAs and use them to predict properties (e.g., spin-splitting energy) of over 187k TMCs. By requiring consensus of the ANN-predicted DFA properties, we improve correspondence of computational lead compounds with literature-mined, experimental compounds over the typically employed single-DFA approach. Machine learning (ML)-based feature analysis reveals universal design rules regardless of density functional choices. Using the consensus among multiple functionals, we identify robust lead complexes in ML-accelerated chemical discovery.![]()
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Affiliation(s)
- Chenru Duan
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA +1-617-253-4584.,Department of Chemistry, Massachusetts Institute of Technology Cambridge MA 02139 USA
| | - Shuxin Chen
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA +1-617-253-4584.,Department of Chemistry, Massachusetts Institute of Technology Cambridge MA 02139 USA
| | - Michael G Taylor
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA +1-617-253-4584
| | - Fang Liu
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA +1-617-253-4584
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA +1-617-253-4584
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68
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Grotjahn R, Kaupp M. Assessment of hybrid functionals for singlet and triplet excitations: Why do some local hybrid functionals perform so well for triplet excitation energies? J Chem Phys 2021; 155:124108. [PMID: 34598568 DOI: 10.1063/5.0063751] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
Abstract
The performance of various hybrid density functionals is assessed for 105 singlet and 105 corresponding triplet vertical excitation energies from the QUEST database. The overall lowest mean absolute error is obtained with the local hybrid (LH) functional LH12ct-SsirPW92 with individual errors of 0.11 eV (0.11 eV) for singlet (triplet) n → π* excitations and 0.29 eV (0.17 eV) for π → π* excitations. This is slightly better than with the overall best performing global hybrid M06-2X [n → π*: 0.13 eV (0.17 eV), π → π*: 0.30 eV (0.20 eV)], while most other global and range-separated hybrids and some LHs suffer from the "triplet problem" of time-dependent density functional theory. This is exemplified by correlating the errors for singlet and triplet excitations on a state-by-state basis. The excellent performance of LHs based on a common local mixing function, i.e., an LMF constructed from the spin-summed rather than the spin-resolved semilocal quantities, is systematically investigated by the introduction of a spin-channel interpolation scheme that allows us to continuously modulate the fraction of opposite-spin terms used in the LMF. The correlation of triplet and singlet errors is systematically improved for the n → π* excitations when larger fractions of the opposite-spin-channel are used in the LMF, whereas this effect is limited for the π → π* excitations. This strongly supports a previously made hypothesis that attributes the excellent performance of LHs based on a common LMF to cross-spin-channel nondynamical correlation terms.
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Affiliation(s)
- Robin Grotjahn
- Technische Universität Berlin, Institut für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7, Straße des 17. Juni 135, 10623 Berlin, Germany
| | - Martin Kaupp
- Technische Universität Berlin, Institut für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7, Straße des 17. Juni 135, 10623 Berlin, Germany
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Ramos C, Muehlbrad J, Janesko BG. Density functionals with full nonlocal exchange, nonlocal rung-3.5 correlation, and D3 dispersion: Combined accuracy for general main-group thermochemistry, kinetics, and noncovalent interactions. J Comput Chem 2021; 42:1974-1981. [PMID: 34387364 DOI: 10.1002/jcc.26728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Accepted: 07/25/2021] [Indexed: 11/11/2022]
Abstract
We introduce the HF-R35-D3(BJ) functional combining full nonlocal exact (Hartree-Fock-like, HF) exchange, inexpensive rung-3.5 correlation constructed from nonlocal one-electron operators, and nonlocal D3 dispersion corrections. HF-R35-D3(BJ) is among the first full-exact-exchange functionals offering competitive accuracy for general main-group thermochemistry, kinetics, and noncovalent interactions. HF-R35-D3(BJ) gives weighted mean absolute deviation WTMAD-2 8.5 kcal/mol across the entire GMTKN55 dataset, outperforming most dispersion-corrected semilocal functionals and approaching the accuracy of dispersion-corrected global hybrids. This requires six fitted parameters, three each in the nonlocal correlation and dispersion corrections. Full nonlocal exchange appears to help give accurate binding energies and reasonable energy orderings for water hexamers. These results motivate continued exploration of inexpensive nonlocal correlation corrections to nonlocal exchange.
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Affiliation(s)
- Chloe Ramos
- Department of Chemistry & Biochemistry, Texas Christian University, Fort Worth, Texas, USA
| | - Jeremiah Muehlbrad
- Department of Chemistry & Biochemistry, Texas Christian University, Fort Worth, Texas, USA
| | - Benjamin G Janesko
- Department of Chemistry & Biochemistry, Texas Christian University, Fort Worth, Texas, USA
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