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Number Cited by Other Article(s)
51
Nie F, Feng P, Song X, Wu M, Tang Q, Chen W. RNAWRE: a resource of writers, readers and erasers of RNA modifications. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2021;2020:5865458. [PMID: 32608478 PMCID: PMC7327530 DOI: 10.1093/database/baaa049] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2020] [Revised: 05/25/2020] [Accepted: 05/29/2020] [Indexed: 12/12/2022]
52
Zhang J, Chen Q, Liu B. DeepDRBP-2L: A New Genome Annotation Predictor for Identifying DNA-Binding Proteins and RNA-Binding Proteins Using Convolutional Neural Network and Long Short-Term Memory. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2021;18:1451-1463. [PMID: 31722485 DOI: 10.1109/tcbb.2019.2952338] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
53
Pan J, Huang Z, Xu Y. m5C-Related lncRNAs Predict Overall Survival of Patients and Regulate the Tumor Immune Microenvironment in Lung Adenocarcinoma. Front Cell Dev Biol 2021;9:671821. [PMID: 34268304 PMCID: PMC8277384 DOI: 10.3389/fcell.2021.671821] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 06/01/2021] [Indexed: 12/24/2022]  Open
54
CWLy-RF: A novel approach for identifying cell wall lyases based on random forest classifier. Genomics 2021;113:2919-2924. [PMID: 34186189 DOI: 10.1016/j.ygeno.2021.06.038] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2021] [Revised: 06/20/2021] [Accepted: 06/25/2021] [Indexed: 02/05/2023]
55
Zhang SY, Zhang SW, Zhang T, Fan XN, Meng J. Recent advances in functional annotation and prediction of the epitranscriptome. Comput Struct Biotechnol J 2021;19:3015-3026. [PMID: 34136099 PMCID: PMC8175281 DOI: 10.1016/j.csbj.2021.05.030] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 05/16/2021] [Accepted: 05/18/2021] [Indexed: 12/17/2022]  Open
56
Charoenkwan P, Chiangjong W, Nantasenamat C, Hasan MM, Manavalan B, Shoombuatong W. StackIL6: a stacking ensemble model for improving the prediction of IL-6 inducing peptides. Brief Bioinform 2021;22:6271998. [PMID: 33963832 DOI: 10.1093/bib/bbab172] [Citation(s) in RCA: 95] [Impact Index Per Article: 23.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 03/30/2021] [Accepted: 04/10/2021] [Indexed: 12/13/2022]  Open
57
Zulfiqar H, Khan RS, Hassan F, Hippe K, Hunt C, Ding H, Song XM, Cao R. Computational identification of N4-methylcytosine sites in the mouse genome with machine-learning method. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2021;18:3348-3363. [PMID: 34198389 DOI: 10.3934/mbe.2021167] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/24/2023]
58
Chen K, Song B, Tang Y, Wei Z, Xu Q, Su J, de Magalhães JP, Rigden DJ, Meng J. RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis. Nucleic Acids Res 2021;49:D1396-D1404. [PMID: 33010174 PMCID: PMC7778951 DOI: 10.1093/nar/gkaa790] [Citation(s) in RCA: 68] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Revised: 09/08/2020] [Accepted: 09/11/2020] [Indexed: 12/11/2022]  Open
59
Ao C, Yu L, Zou Q. Prediction of bio-sequence modifications and the associations with diseases. Brief Funct Genomics 2020;20:1-18. [PMID: 33313647 DOI: 10.1093/bfgp/elaa023] [Citation(s) in RCA: 59] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2020] [Revised: 11/09/2020] [Accepted: 11/10/2020] [Indexed: 12/22/2022]  Open
60
Jiang J, Song B, Tang Y, Chen K, Wei Z, Meng J. m5UPred: A Web Server for the Prediction of RNA 5-Methyluridine Sites from Sequences. MOLECULAR THERAPY. NUCLEIC ACIDS 2020;22:742-747. [PMID: 33230471 PMCID: PMC7595847 DOI: 10.1016/j.omtn.2020.09.031] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 09/25/2020] [Indexed: 11/16/2022]
61
Chen X, Xiong Y, Liu Y, Chen Y, Bi S, Zhu X. m5CPred-SVM: a novel method for predicting m5C sites of RNA. BMC Bioinformatics 2020;21:489. [PMID: 33126851 PMCID: PMC7602301 DOI: 10.1186/s12859-020-03828-4] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Accepted: 10/21/2020] [Indexed: 02/08/2023]  Open
62
Li Q, Xu L, Li Q, Zhang L. Identification and Classification of Enhancers Using Dimension Reduction Technique and Recurrent Neural Network. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2020;2020:8852258. [PMID: 33133227 PMCID: PMC7591959 DOI: 10.1155/2020/8852258] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Revised: 09/16/2020] [Accepted: 09/30/2020] [Indexed: 12/21/2022]
63
Wang XF, Gao P, Liu YF, Li HF, Lu F. Predicting Thermophilic Proteins by Machine Learning. Curr Bioinform 2020. [DOI: 10.2174/1574893615666200207094357] [Citation(s) in RCA: 54] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
64
Wang Z, Liu D, Xu B, Tian R, Zuo Y. Modular arrangements of sequence motifs determine the functional diversity of KDM proteins. Brief Bioinform 2020;22:5912575. [PMID: 32987405 DOI: 10.1093/bib/bbaa215] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
65
Han Y, Cheng L, Sun W. Analysis of Protein-Protein Interaction Networks through Computational Approaches. Protein Pept Lett 2020;27:265-278. [PMID: 31692419 DOI: 10.2174/0929866526666191105142034] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Revised: 05/08/2019] [Accepted: 09/26/2019] [Indexed: 01/02/2023]
66
Li R, Li H, Yang S, Feng X. The Influences of Palindromes in mRNA on Protein Folding Rates. Protein Pept Lett 2020;27:303-312. [PMID: 31612810 DOI: 10.2174/0929866526666191014144015] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2019] [Revised: 06/14/2019] [Accepted: 06/29/2019] [Indexed: 01/21/2023]
67
Xu L, Liang G, Chen B, Tan X, Xiang H, Liao C. A Computational Method for the Identification of Endolysins and Autolysins. Protein Pept Lett 2020;27:329-336. [PMID: 31577192 DOI: 10.2174/0929866526666191002104735] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2019] [Revised: 06/27/2019] [Accepted: 09/03/2019] [Indexed: 12/21/2022]
68
Charoenkwan P, Kanthawong S, Nantasenamat C, Hasan MM, Shoombuatong W. iDPPIV-SCM: A Sequence-Based Predictor for Identifying and Analyzing Dipeptidyl Peptidase IV (DPP-IV) Inhibitory Peptides Using a Scoring Card Method. J Proteome Res 2020;19:4125-4136. [PMID: 32897718 DOI: 10.1021/acs.jproteome.0c00590] [Citation(s) in RCA: 59] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
69
Bi Y, Xiang D, Ge Z, Li F, Jia C, Song J. An Interpretable Prediction Model for Identifying N7-Methylguanosine Sites Based on XGBoost and SHAP. MOLECULAR THERAPY. NUCLEIC ACIDS 2020;22:362-372. [PMID: 33230441 PMCID: PMC7533297 DOI: 10.1016/j.omtn.2020.08.022] [Citation(s) in RCA: 80] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Accepted: 08/20/2020] [Indexed: 12/19/2022]
70
Li Q, Zhou W, Wang D, Wang S, Li Q. Prediction of Anticancer Peptides Using a Low-Dimensional Feature Model. Front Bioeng Biotechnol 2020;8:892. [PMID: 32903381 PMCID: PMC7434836 DOI: 10.3389/fbioe.2020.00892] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Accepted: 07/10/2020] [Indexed: 01/09/2023]  Open
71
Prediction of N7-methylguanosine sites in human RNA based on optimal sequence features. Genomics 2020;112:4342-4347. [PMID: 32721444 DOI: 10.1016/j.ygeno.2020.07.035] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2020] [Revised: 07/18/2020] [Accepted: 07/22/2020] [Indexed: 12/14/2022]
72
Guan ZX, Li SH, Zhang ZM, Zhang D, Yang H, Ding H. A Brief Survey for MicroRNA Precursor Identification Using Machine Learning Methods. Curr Genomics 2020;21:11-25. [PMID: 32655294 PMCID: PMC7324890 DOI: 10.2174/1389202921666200214125102] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Revised: 01/24/2020] [Accepted: 01/30/2020] [Indexed: 11/22/2022]  Open
73
Geng G, Zhang Z, Cheng L. Identification of a Multi-Long Noncoding RNA Signature for the Diagnosis of Type 1 Diabetes Mellitus. Front Bioeng Biotechnol 2020;8:553. [PMID: 32719778 PMCID: PMC7350420 DOI: 10.3389/fbioe.2020.00553] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2020] [Accepted: 05/07/2020] [Indexed: 02/01/2023]  Open
74
Zhao T, Hu Y, Zang T, Wang Y. Identifying Protein Biomarkers in Blood for Alzheimer's Disease. Front Cell Dev Biol 2020;8:472. [PMID: 32626709 PMCID: PMC7314983 DOI: 10.3389/fcell.2020.00472] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Accepted: 05/20/2020] [Indexed: 12/26/2022]  Open
75
Zhang D, Guan ZX, Zhang ZM, Li SH, Dao FY, Tang H, Lin H. Recent Development of Computational Predicting Bioluminescent Proteins. Curr Pharm Des 2020;25:4264-4273. [PMID: 31696804 DOI: 10.2174/1381612825666191107100758] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Accepted: 11/04/2019] [Indexed: 12/22/2022]
76
Dou L, Li X, Ding H, Xu L, Xiang H. Prediction of m5C Modifications in RNA Sequences by Combining Multiple Sequence Features. MOLECULAR THERAPY. NUCLEIC ACIDS 2020;21:332-342. [PMID: 32645685 PMCID: PMC7340967 DOI: 10.1016/j.omtn.2020.06.004] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Revised: 06/03/2020] [Accepted: 06/04/2020] [Indexed: 12/14/2022]
77
Wang C, Zhang Y, Han S. Its2vec: Fungal Species Identification Using Sequence Embedding and Random Forest Classification. BIOMED RESEARCH INTERNATIONAL 2020;2020:2468789. [PMID: 32566672 PMCID: PMC7275950 DOI: 10.1155/2020/2468789] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Revised: 03/20/2020] [Accepted: 03/25/2020] [Indexed: 12/19/2022]
78
Jin X, Liao Q, Liu B. PL-search: a profile-link-based search method for protein remote homology detection. Brief Bioinform 2020;22:5840006. [PMID: 32427287 DOI: 10.1093/bib/bbaa051] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2020] [Revised: 03/11/2020] [Accepted: 03/12/2020] [Indexed: 12/26/2022]  Open
79
Li F, Chen J, Ge Z, Wen Y, Yue Y, Hayashida M, Baggag A, Bensmail H, Song J. Computational prediction and interpretation of both general and specific types of promoters in Escherichia coli by exploiting a stacked ensemble-learning framework. Brief Bioinform 2020;22:2126-2140. [PMID: 32363397 DOI: 10.1093/bib/bbaa049] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 02/25/2020] [Accepted: 03/11/2020] [Indexed: 12/12/2022]  Open
80
Cai Y, Wang J, Deng L. SDN2GO: An Integrated Deep Learning Model for Protein Function Prediction. Front Bioeng Biotechnol 2020;8:391. [PMID: 32411695 PMCID: PMC7201018 DOI: 10.3389/fbioe.2020.00391] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2020] [Accepted: 04/07/2020] [Indexed: 02/01/2023]  Open
81
Zeng R, Liao M. Developing a Multi-Layer Deep Learning Based Predictive Model to Identify DNA N4-Methylcytosine Modifications. Front Bioeng Biotechnol 2020;8:274. [PMID: 32373597 PMCID: PMC7186498 DOI: 10.3389/fbioe.2020.00274] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 03/16/2020] [Indexed: 12/21/2022]  Open
82
i4mC-Mouse: Improved identification of DNA N4-methylcytosine sites in the mouse genome using multiple encoding schemes. Comput Struct Biotechnol J 2020;18:906-912. [PMID: 32322372 PMCID: PMC7168350 DOI: 10.1016/j.csbj.2020.04.001] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Revised: 03/31/2020] [Accepted: 04/03/2020] [Indexed: 12/12/2022]  Open
83
Rashid MM, Shatabda S, Hasan MM, Kurata H. Recent Development of Machine Learning Methods in Microbial Phosphorylation Sites. Curr Genomics 2020;21:194-203. [PMID: 33071613 PMCID: PMC7521030 DOI: 10.2174/1389202921666200427210833] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2020] [Revised: 04/12/2020] [Accepted: 04/13/2020] [Indexed: 01/10/2023]  Open
84
Zhang M, Cheng L, Zhang Y. Characterization of Dysregulated lncRNA-Associated ceRNA Network Reveals Novel lncRNAs With ceRNA Activity as Epigenetic Diagnostic Biomarkers for Osteoporosis Risk. Front Cell Dev Biol 2020;8:184. [PMID: 32296700 PMCID: PMC7136400 DOI: 10.3389/fcell.2020.00184] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Accepted: 03/04/2020] [Indexed: 01/28/2023]  Open
85
Kou N, Zhou W, He Y, Ying X, Chai S, Fei T, Fu W, Huang J, Liu H. A Mendelian Randomization Analysis to Expose the Causal Effect of IL-18 on Osteoporosis Based on Genome-Wide Association Study Data. Front Bioeng Biotechnol 2020;8:201. [PMID: 32266232 PMCID: PMC7099043 DOI: 10.3389/fbioe.2020.00201] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Accepted: 02/28/2020] [Indexed: 01/16/2023]  Open
86
Dou L, Li X, Ding H, Xu L, Xiang H. Is There Any Sequence Feature in the RNA Pseudouridine Modification Prediction Problem? MOLECULAR THERAPY. NUCLEIC ACIDS 2020;19:293-303. [PMID: 31865116 PMCID: PMC6931122 DOI: 10.1016/j.omtn.2019.11.014] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2019] [Revised: 10/29/2019] [Accepted: 11/11/2019] [Indexed: 01/01/2023]
87
Borrayo E, May-Canche I, Paredes O, Morales JA, Romo-Vázquez R, Vélez-Pérez H. Whole-Genome k-mer Topic Modeling AssociatesBacterial Families. Genes (Basel) 2020;11:genes11020197. [PMID: 32075081 PMCID: PMC7074292 DOI: 10.3390/genes11020197] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Revised: 02/07/2020] [Accepted: 02/09/2020] [Indexed: 11/16/2022]  Open
88
Zhao X, Jiao Q, Li H, Wu Y, Wang H, Huang S, Wang G. ECFS-DEA: an ensemble classifier-based feature selection for differential expression analysis on expression profiles. BMC Bioinformatics 2020;21:43. [PMID: 32024464 PMCID: PMC7003361 DOI: 10.1186/s12859-020-3388-y] [Citation(s) in RCA: 61] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Accepted: 01/27/2020] [Indexed: 11/27/2022]  Open
89
Zhang ZY, Yang YH, Ding H, Wang D, Chen W, Lin H. Design powerful predictor for mRNA subcellular location prediction in Homo sapiens. Brief Bioinform 2020;22:526-535. [PMID: 31994694 DOI: 10.1093/bib/bbz177] [Citation(s) in RCA: 96] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Revised: 11/05/2019] [Accepted: 11/21/2019] [Indexed: 12/14/2022]  Open
90
Zhao S, Jiang H, Liang ZH, Ju H. Integrating Multi-Omics Data to Identify Novel Disease Genes and Single-Neucleotide Polymorphisms. Front Genet 2020;10:1336. [PMID: 32038707 PMCID: PMC6993083 DOI: 10.3389/fgene.2019.01336] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Accepted: 12/06/2019] [Indexed: 12/15/2022]  Open
91
Ao C, Zhang Y, Li D, Zhao Y, Zou Q. Progress in the development of antimicrobial peptide prediction tools. Curr Protein Pept Sci 2020;22:CPPS-EPUB-103746. [PMID: 31957609 DOI: 10.2174/1389203721666200117163802] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2019] [Revised: 06/12/2019] [Accepted: 07/15/2019] [Indexed: 11/22/2022]
92
Li H, Song M, Yang W, Cao P, Zheng L, Zuo Y. A Comparative Analysis of Single-Cell Transcriptome Identifies Reprogramming Driver Factors for Efficiency Improvement. MOLECULAR THERAPY. NUCLEIC ACIDS 2020;19:1053-1064. [PMID: 32045876 PMCID: PMC7015826 DOI: 10.1016/j.omtn.2019.12.035] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Revised: 12/23/2019] [Accepted: 12/26/2019] [Indexed: 12/11/2022]
93
Li Q, Dong B, Wang D, Wang S. Identification of Secreted Proteins From Malaria Protozoa With Few Features. IEEE ACCESS 2020;8:89793-89801. [DOI: 10.1109/access.2020.2994206] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2025]
94
Sun S, Wang C, Ding H, Zou Q. Machine learning and its applications in plant molecular studies. Brief Funct Genomics 2019;19:40-48. [DOI: 10.1093/bfgp/elz036] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Revised: 09/06/2019] [Accepted: 09/15/2019] [Indexed: 01/16/2023]  Open
95
Wang J, Zhang J, Cai Y, Deng L. DeepMiR2GO: Inferring Functions of Human MicroRNAs Using a Deep Multi-Label Classification Model. Int J Mol Sci 2019;20:E6046. [PMID: 31801264 PMCID: PMC6928926 DOI: 10.3390/ijms20236046] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2019] [Revised: 11/25/2019] [Accepted: 11/26/2019] [Indexed: 01/08/2023]  Open
96
Wang F, Guan ZX, Dao FY, Ding H. A Brief Review of the Computational Identification of Antifreeze Protein. CURR ORG CHEM 2019. [DOI: 10.2174/1385272823666190718145613] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
97
Fang T, Zhang Z, Sun R, Zhu L, He J, Huang B, Xiong Y, Zhu X. RNAm5CPred: Prediction of RNA 5-Methylcytosine Sites Based on Three Different Kinds of Nucleotide Composition. MOLECULAR THERAPY. NUCLEIC ACIDS 2019;18:739-747. [PMID: 31726390 PMCID: PMC6859278 DOI: 10.1016/j.omtn.2019.10.008] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Revised: 10/11/2019] [Accepted: 10/11/2019] [Indexed: 12/11/2022]
98
Li SH, Guan ZX, Zhang D, Zhang ZM, Huang J, Yang W, Lin H. Recent Advancement in Predicting Subcellular Localization of Mycobacterial Protein with Machine Learning Methods. Med Chem 2019;16:605-619. [PMID: 31584379 DOI: 10.2174/1573406415666191004101913] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2019] [Revised: 06/25/2019] [Accepted: 08/23/2019] [Indexed: 01/28/2023]
99
Meng C, Jin S, Wang L, Guo F, Zou Q. AOPs-SVM: A Sequence-Based Classifier of Antioxidant Proteins Using a Support Vector Machine. Front Bioeng Biotechnol 2019;7:224. [PMID: 31620433 PMCID: PMC6759716 DOI: 10.3389/fbioe.2019.00224] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2019] [Accepted: 09/03/2019] [Indexed: 01/03/2023]  Open
100
Lv H, Dao FY, Guan ZX, Zhang D, Tan JX, Zhang Y, Chen W, Lin H. iDNA6mA-Rice: A Computational Tool for Detecting N6-Methyladenine Sites in Rice. Front Genet 2019;10:793. [PMID: 31552096 PMCID: PMC6746913 DOI: 10.3389/fgene.2019.00793] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2019] [Accepted: 07/26/2019] [Indexed: 01/08/2023]  Open
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