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Number Cited by Other Article(s)
51
Heydari M, Miclotte G, Van de Peer Y, Fostier J. Illumina error correction near highly repetitive DNA regions improves de novo genome assembly. BMC Bioinformatics 2019;20:298. [PMID: 31159722 PMCID: PMC6545690 DOI: 10.1186/s12859-019-2906-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Accepted: 05/17/2019] [Indexed: 11/10/2022]  Open
52
Transcriptomic-Proteomic Correlation in the Predation-Evoked Venom of the Cone Snail, Conus imperialis. Mar Drugs 2019;17:md17030177. [PMID: 30893765 PMCID: PMC6471084 DOI: 10.3390/md17030177] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2019] [Revised: 03/12/2019] [Accepted: 03/14/2019] [Indexed: 12/23/2022]  Open
53
Wang W, Schalamun M, Morales-Suarez A, Kainer D, Schwessinger B, Lanfear R. Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case. BMC Genomics 2018;19:977. [PMID: 30594129 PMCID: PMC6311037 DOI: 10.1186/s12864-018-5348-8] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2018] [Accepted: 12/03/2018] [Indexed: 12/23/2022]  Open
54
Sohn JI, Nam JW. The present and future of de novo whole-genome assembly. Brief Bioinform 2018;19:23-40. [PMID: 27742661 DOI: 10.1093/bib/bbw096] [Citation(s) in RCA: 80] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2016] [Indexed: 12/15/2022]  Open
55
Huang YT, Huang YW. An efficient error correction algorithm using FM-index. BMC Bioinformatics 2017;18:524. [PMID: 29179672 PMCID: PMC5704532 DOI: 10.1186/s12859-017-1940-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2017] [Accepted: 11/14/2017] [Indexed: 11/10/2022]  Open
56
Evaluation of the impact of Illumina error correction tools on de novo genome assembly. BMC Bioinformatics 2017;18:374. [PMID: 28821237 PMCID: PMC5563063 DOI: 10.1186/s12859-017-1784-8] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Accepted: 08/11/2017] [Indexed: 01/20/2023]  Open
57
Song L, Huang W, Kang J, Huang Y, Ren H, Ding K. Comparison of error correction algorithms for Ion Torrent PGM data: application to hepatitis B virus. Sci Rep 2017;7:8106. [PMID: 28808243 PMCID: PMC5556038 DOI: 10.1038/s41598-017-08139-y] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2017] [Accepted: 07/05/2017] [Indexed: 01/26/2023]  Open
58
Dlugosz M, Deorowicz S. RECKONER: read error corrector based on KMC. Bioinformatics 2017;33:1086-1089. [PMID: 28062451 DOI: 10.1093/bioinformatics/btw746] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2016] [Accepted: 11/24/2016] [Indexed: 11/12/2022]  Open
59
Schmidt B, Hildebrandt A. Next-generation sequencing: big data meets high performance computing. Drug Discov Today 2017;22:712-717. [DOI: 10.1016/j.drudis.2017.01.014] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2016] [Revised: 12/16/2016] [Accepted: 01/25/2017] [Indexed: 12/17/2022]
60
Zhao L, Chen Q, Li W, Jiang P, Wong L, Li J. MapReduce for accurate error correction of next-generation sequencing data. Bioinformatics 2017;33:3844-3851. [PMID: 28205674 DOI: 10.1093/bioinformatics/btx089] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2016] [Accepted: 02/14/2017] [Indexed: 11/14/2022]  Open
61
Lavezzo E, Barzon L, Toppo S, Palù G. Third generation sequencing technologies applied to diagnostic microbiology: benefits and challenges in applications and data analysis. Expert Rev Mol Diagn 2016;16:1011-23. [PMID: 27453996 DOI: 10.1080/14737159.2016.1217158] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
62
Miclotte G, Heydari M, Demeester P, Rombauts S, Van de Peer Y, Audenaert P, Fostier J. Jabba: hybrid error correction for long sequencing reads. Algorithms Mol Biol 2016;11:10. [PMID: 27148393 PMCID: PMC4855726 DOI: 10.1186/s13015-016-0075-7] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2015] [Accepted: 04/25/2016] [Indexed: 11/13/2022]  Open
63
Sameith K, Roscito JG, Hiller M. Iterative error correction of long sequencing reads maximizes accuracy and improves contig assembly. Brief Bioinform 2016;18:1-8. [PMID: 26868358 PMCID: PMC5221426 DOI: 10.1093/bib/bbw003] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2015] [Revised: 01/02/2016] [Indexed: 11/13/2022]  Open
64
Alic AS, Ruzafa D, Dopazo J, Blanquer I. Objective review ofde novostand-alone error correction methods for NGS data. WILEY INTERDISCIPLINARY REVIEWS: COMPUTATIONAL MOLECULAR SCIENCE 2016. [DOI: 10.1002/wcms.1239] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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