Resistance to QoI (Strobilurin-like) Fungicides in Isolates of Pyricularia grisea from Perennial Ryegrass

Molecular characterization and biological response to respiration inhibitors of Pyricularia isolates from ctenanthe and rice plants

The molecular profile and the biological response of isolates of Pyricularia oryzae Cavara obtained from ctenanthe to two strobilurins (azoxystrobin, kresoxim-methyl) and the phenylpyridinamine fungicide fluazinam were characterized, and compared with isolates from rice plants. Five different isozymes (alpha-esterase, lactate, malate, isocitrate and sorbitol dehydrogenases) and five random decamer primers for RAPD-PCR were used to generate molecular markers. Using unweighted pair-group with arithmetic average analysis, ctenanthe isolates were found to form a separate group distinct from that of the rice isolates for both sets of markers. Amplified polymorphic sequences of mitochondrial cytochrome b that were digested with Fnu4HI or StyI revealed no differences among Pyricularia isolates at amino acid positions 143 or 129 which confer resistance to strobilurins in several fungi. In absence of the alternative respiration inhibitor salicylhydroxamic acid (SHAM) the three fungicides showed inferior and variable efficacy, with a trend toward the rice isolate being less sensitive. The addition of SHAM enhanced the effectiveness of all fungicides against isolates regardless of their origin. Appressorium formation was the most vulnerable target of action of the respiration inhibitors and azoxystrobin the most effective. This is the first report of a comparison between the molecular profiles and sensitivities to respiration inhibitors for Pyricularia oryzae isolates from a non-gramineous host and from rice.

Effect of the F129L Mutation in Alternaria solani on Fungicides Affecting Mitochondrial Respiration

Isolates of Alternaria solani previously collected from throughout the Midwestern United States and characterized as being azoxystrobin sensitive or reduced sensitive were tested for sensitivity to the Quinone outside inhibitor (Q_oI) fungicides famoxadone and fenamidone and the carboxamide fungicide boscalid. All three fungicides affect mitochondrial respiration: famoxadone and fenamidone at complex III, and boscalid at complex II. A. solani isolates possessing reducedsensitivity to azoxystrobin also were less sensitive in vitro to famoxadone and fenamidone compared with azoxystrobin-sensitive isolates, but the shift in sensitivity was of lower magnitude, approximately 2- to 3-fold versus approximately 12-fold for azoxystrobin. The in vitro EC₅₀ values, the concentration that effectively reduces germination by 50% relative to the untreated control, for sensitive A. solani isolates were significantly lower for famoxadone and azoxystrobin than for fenamidone and boscalid; whereas, for reduced-sensitive isolates, famoxadone EC₅₀ values were significantly lower than all other fungicides. Isolates of A. solani with reducedsensitivity to azoxystrobin were twofold more sensitive in vitro to boscalid than were azoxystrobin-sensitive wild-type isolates, displaying negative cross-sensitivity. All isolates determined to have reduced-sensitivity to azoxystrobin also were determined to possess the amino acid substitution of phenylalanine with leucine at position 129 (F129L mutation) using real-time polymerase chain reaction. In vivo studies were performed to determine the effects of in vitro sensitivity shifts on early blight disease control provided by each fungicide over a range of concentrations. Reduced-sensitivity to azoxystrobin did not significantly affect disease control provided by famoxadone, regardless of the wide range of in vitro famoxadone EC₅₀ values. Efficacy of fenamidone was affected by some azoxystrobin reduced-sensitive A. solani isolates, but not others. Boscalid controlled azoxystrobin-sensitive and reduced-sensitive isolates with equal effectiveness. These results suggest that the F129L mutation present in A. solani does not convey cross-sensitivity in vivo among all Q_oI or related fungicides, and that two- to threefold shifts in in vitro sensitivity among A. solani isolates does not appreciably affect disease control.

Sensitivity of California Isolates of Uncinula necator to Trifloxystrobin and Spiroxamine, and Update on Triadimefon Sensitivity

Sensitivities of Uncinula necator to spiroxamine and trifloxystrobin were established by assay of 36 and 35 isolates, respectively, recovered from California grape vineyards in 2002 and increased as single-spore lines for laboratory testing. Twenty-nine single-spore isolates also were evaluated for levels of sensitivity to the fungicide triadimefon to determine if there had been a reversion to sensitivity following the development of resistance in 1986. Although triadimefon use was limited after 1992, other demethylation inhibitor (DMI) fungicides (fenarimol and myclobutanil) were used extensively in California vineyards. For spiroxamine, the sample mean value of the median effective concentration (EC50 value) was 365 μg/liter (95% confidence interval [CI] from 251 to 531 μg/liter) and values were distributed log-normally. The corresponding mean for trifloxystrobin was 12.8 μg/liter bounded by 8.9 to 18.5 μg/liter for the 95% CI. State-wide, the triadimefon mean EC₅₀ was 8.8 mg/liter, bounded by a 5.3 to 14.5 mg/liter 95% CI, and those values were significantly higher than those obtained in the last assay 12 years earlier. Significant differences in sensitivity of U. necator to triadimefon were detected at a regional scale by comparison of mean EC₅₀ values of frequency distributions representative of regions within California, although the relations between those regions were different from the prior survey.

Effects of Timing of Ethofumesate Application on Severity of Gray Leaf Spot of Perennial Ryegrass Turf

Ethofumesate is a widely used herbicide for control of annual bluegrass (Poa annua) in perennial ryegrass (Lolium perenne) fairways on golf courses in the United States. Effect of timing of ethofumesate application on development of gray leaf spot was evaluated on perennial ryegrass turf treated with six classes of fungicide. Two applications of ethofumesate (2.28 kg a.i./ha) were made to perennial ryegrass turf maintained at a 2-cm height, at 4-week intervals, each fall (October and November 1999 and 2000) or spring (April and May 2000 and 2001). In addition, turf was treated with the fungicides, azoxystrobin, chlorothalonil, flutolanil, iprodione, propiconazole, or thiophanate-methyl at the label rates at 14-day intervals. There were significant effects (P ≤ 0.05) of ethofumesate application timing and fungicide regime on gray leaf spot development. There also were significant interactions between the ethofumesate application timing and fungicide. Severity of gray leaf spot was significantly greater in turf plots treated with ethofumesate in spring compared to turf treated in fall or nontreated control plots treated with fungicides, flutolanil, iprodione, and propiconazole that were relatively less effective in control of gray leaf spot. There was no significant difference in disease severity in turf treated with ethofumesate in fall or to turf not treated with herbicide regardless of the fungicide used. Results of this study indicate that spring application of ethofumesate contributes to development of gray leaf spot epidemics, and the application timing interacts with the classes of fungicides. This study suggests that ethofumesate should be applied only in fall for control of P. annua, particularly in golf courses with a chronic gray leaf spot problem, as part of an integrated management of gray leaf spot in perennial ryegrass fairways.

Shift in Sensitivity of Alternaria solani in Response to QoI Fungicides

Isolates of Alternaria solani, cause of potato early blight, collected in 1998 through 2001 from various potato growing areas across the midwestern United States, were tested for sensitivity to azoxystrobin. Isolates collected in 1998, prior to the introduction of azoxystrobin, were tested to establish the baseline sensitivity of the fungus to this fungicide. Isolates collected in subsequent years, not necessarily from the same sites as baseline isolates, were tested to determine if populations of A. solani had become less sensitive to azoxystrobin. Azoxystrobin sensitivity was determined utilizing an in vitro spore germination assay. The effective fungicide concentration that inhibited spore germination by 50% (EC₅₀) was determined for each isolate. There was no significant difference in mean EC₅₀ values between baseline isolates and all other isolates collected through 1999. Mean azoxystrobin EC₅₀ values of A. solani isolates collected in 2000 and 2001 were significantly higher compared with means from previous years, and mean azoxystrobin EC₅₀ values from 2001 were significantly higher than means from isolates collected in 2000. A subset of 54 A. solani isolates was evaluated in vitro for cross-sensitivity to pyraclostrobin and trifloxystrobin. A highly significant and strong correlation among the isolates tested for fungicide cross-sensitivity was detected between azoxystrobin and pyraclostrobin; however, the correlation between azoxystrobin and trifloxystrobin, and between trifloxystrobin and pyraclostrobin, was significant but weak. A second subset of five isolates was chosen for in vivo assessment of azoxystrobin, pyraclostrobin, and trifloxystrobin sensitivity. Disease severity on plants treated with azoxystrobin and pyraclostrobin was significantly greater with reduced-sensitive A. solani isolates compared with sensitive isolates. Disease severity was not statistically different between azoxystrobin reduced-sensitive and sensitive A. solani isolates on plants treated with trifloxystrobin. This is the first report of a shift in sensitivity to Q_oI fungicides in a fungus possessing only an anamorphic stage.

Development of a Weather-Based Advisory Program for Scheduling Fungicide Applications for Control of White Rust of Spinach

Weather-based advisory programs were developed and evaluated for timing of fungicide applications to control white rust of spinach (Spinacia oleracea) in three field trials using a susceptible cultivar. The advisory programs were based on previous studies that defined periods of temperature (T) and wetness (relative humidity ≥90%, W) that favored disease development. The protectant fungicides mancozeb or maneb (ethylene bisdithiocarbamates; EBDCs) and the systemic fungicide azoxystrobin were applied after 3, 6, 12, 24, and 36 cumulative hours of wetness weighted by temperature (T*W). T*W programs were compared with an advisory program based on 12 h of continuous wetness (12-h W), a 7-day calendar program, and a nonsprayed control treatment. Except for the 3-h T*W program, the number of fungicide applications per trial was reduced for all advisory programs compared with the 7-day program. Averaged over the three trials, applications were reduced from 2.7 per trial for the 6-h T*W program to 3.7 per trial for the 36-h T*W and the 12-h W programs. For the EBDC fungicides, all advisory programs except the 36-h T*W and 12-h W programs reduced incidence and severity of white rust compared with the nonsprayed control. Disease incidence and severity for the 3-h and 6-h T*W programs did not differ from the 7-day program. Compared with the EBDC fungicides, azoxystrobin resulted in reduced disease incidence for each of the spray programs and reduced disease severity for all spray programs except the 7-day program. For azoxystrobin, all advisory programs reduced disease incidence and severity compared with the nonsprayed control. Incidence and severity of white rust did not differ from the 7-day program for the 3-h, 6-h, and 12-h T*W programs. Based on reductions in the number of fungicide applications and the level of disease control, the 6-h and 12-h T*W programs were most efficient advisory programs for the EBDC fungicides and azoxystrobin, respectively.

Field Resistance to Strobilurin (Q(o)I) Fungicides in Pyricularia grisea Caused by Mutations in the Mitochondrial Cytochrome b Gene

ABSTRACT Gray leaf spot caused by Pyricularia grisea is a highly destructive disease of perennial ryegrass turf. Control of gray leaf spot is dependent on the use of preventative fungicide treatments. Strobilurin-based (Q(o)I) fungicides, which inhibit the cytochrome bc(1) respiratory complex, have proven to be very effective against gray leaf spot. However, in August 2000, disease was diagnosed in Q(o)I-treated perennial ryegrass turf on golf courses in Lexington, KY, Champaign, IL, and Bloomington, IL. To determine if resistance was due to a mutation in the fungicide target, the cytochrome b gene (CYTB) was amplified from baseline and resistant isolates. Nucleotide sequence analysis revealed an intronless coding region of 1,179 bp. Isolates that were resistant to Q(o)I fungicides possessed one of two different mutant alleles, each of which carried a single point mutation. The first mutant allele had a guanine-to-cytosine transition at nucleotide position +428, resulting in a replacement of glycine 143 by alanine (G143A). Mutant allele two exhibited a cytosine-to-adenine transversion at position +387, causing a phenylalanine-to-leucine change (F129L). Cleavable amplified polymorphic sequence analysis revealed that neither mutation was present in a collection of baseline isolates collected before Q(o)I fungicide use and indicated that suspected Q(o)I- resistant isolates found in 2001 in Indiana and Maryland possessed the F129L mutation. The Pyricularia grisea isolates possessing the G143A substitution were significantly more resistant to azoxystrobin and trifloxystrobin, in vitro, than those having F129L. DNA fingerprinting of resistant isolates revealed that the mutations occurred in just five genetic backgrounds, suggesting that field resistance to the Q(o)I fungicides in Pyricularia grisea is due to a small number of ancestral mutations.

A critical evaluation of the role of alternative oxidase in the performance of strobilurin and related fungicides acting at the Qo site of complex III

Mitochondrial respiration conserves energy by linking NADH oxidation and electron-coupled proton translocation with ATP synthesis, through a core pathway involving three large protein complexes. Strobilurin fungicides block electron flow through one of these complexes (III), and disrupt energy supply. Despite an essential need for ATP throughout fungal disease development, strobilurins are largely preventative; indeed some diseases are not controlled at all, and several pathogens have quickly developed resistance. Target-site variation is not the only cause of these performance difficulties. Alternative oxidase (AOX) is a strobilurin-insensitive terminal oxidase that allows electrons from ubiquinol to bypass Complex III. Its synthesis is constitutive in some fungi but in many others is induced by inhibition of the main pathway. AOX provides a strobilurin-insensitive pathway for oxidation of NADH. Protons are pumped as electrons flow through Complex I, but energy conservation is less efficient than for the full respiratory chain. Salicylhydroxamic acid (SHAM) is a characteristic inhibitor of AOX, and several studies have explored the potentiation of strobilurin activity by SHAM. We present a kinetic-based model which relates changes in the extent of potentiation during different phases of disease development to a changing importance of energy efficiency. The model provides a framework for understanding the varying efficacy of strobilurin fungicides. In many cases, AOX can limit strobilurin effectiveness once an infection is established, but is unable to interfere significantly with strobilurin action during germination. A less stringent demand for energy efficiency during early disease development could lead to insensitivity towards this class of fungicides. This is discussed in relation to Botrytis cinerea, which is often poorly controlled by strobilurins. Mutations with a similar effect may explain evidence implicating AOX in resistance development in normally well-controlled plant pathogens, such as Venturia inaequalis.

A temperature and leaf wetness duration-based model for prediction of gray leaf spot of perennial ryegrass turf

ABSTRACT Gray leaf spot is a serious disease of perennial ryegrass (Lolium perenne), causing severe epidemics in golf course fairways. The effects of temperature and leaf wetness duration on the development of gray leaf spot of perennial ryegrass turf were evaluated in controlled environment chambers. Six-week-old Legacy II ryegrass plants were inoculated with an aqueous conidial suspension of Pyricularia grisea (approximately 8 x 10(4) conidia per ml of water) and subjected to four different temperatures (20, 24, 28, and 32 degrees C) and 12 leaf wetness durations (3 to 36 h at 3-h intervals). Three days after inoculation, gray leaf spot developed on plants at all temperatures and leaf wetness durations. Disease incidence (percent leaf blades symptomatic) and severity (index 0 to 10; 0 = leaf blades asymptomatic, 10 = >90% leaf area necrotic) were assessed 7 days after inoculation. There were significant effects ( alpha = 0.0001) of temperature and leaf wetness duration on disease incidence and severity, and there were significant interactions ( alpha = 0.0001) between them. Among the four temperatures tested, 28 degrees C was most favorable to gray leaf spot development. Disease incidence and severity increased with increased leaf wetness duration at all temperatures. A shorter leaf wetness duration was required for disease development under warmer temperatures. Analysis of variance with orthogonal polynomial contrasts and regression analyses were used to determine the functional relationships among temperature and leaf wetness duration and gray leaf spot incidence and severity. Significant effects were included in a regression model that described the relationship. The polynomial model included linear, quadratic, and cubic terms for temperature and leaf wetness duration effects. The adjusted coefficients of determination for the fitted model for disease incidence and severity were 0.84 and 0.87, respectively. The predictive model may be used as part of an integrated gray leaf spot forecasting system for perennial ryegrass turf.