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Zhong L, He S, Yi F, Li X, Wei L, Zeng C, Huang Z, Li Z. Spatio-temporal evaluation of epileptic intracranial EEG based on entropy and synchronization: A phase transition idea. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103689] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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52
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Classification of EEG Signals for Prediction of Epileptic Seizures. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12147251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Epilepsy is a common brain disorder that causes patients to face multiple seizures in a single day. Around 65 million people are affected by epilepsy worldwide. Patients with focal epilepsy can be treated with surgery, whereas generalized epileptic seizures can be managed with medications. It has been noted that in more than 30% of cases, these medications fail to control epileptic seizures, resulting in accidents and limiting the patient’s life. Predicting epileptic seizures in such patients prior to the commencement of an oncoming seizure is critical so that the seizure can be treated with preventive medicines before it occurs. Electroencephalogram (EEG) signals of patients recorded to observe brain electrical activity during a seizure can be quite helpful in predicting seizures. Researchers have proposed methods that use machine and/or deep learning techniques to predict epileptic seizures using scalp EEG signals; however, prediction of seizures with increased accuracy is still a challenge. Therefore, we propose a three-step approach. It includes preprocessing of scalp EEG signals with PREP pipeline, which is a more sophisticated alternative to basic notch filtering. This method uses a regression-based technique to further enhance the SNR, with a combination of handcrafted, i.e., statistical features such as temporal mean, variance, and skewness, and automated features using CNN, followed by classification of interictal state and preictal state segments using LSTM to predict seizures. We train and validate our proposed technique on the CHB-MIT scalp EEG dataset and achieve accuracy of 94%, sensitivity of 93.8%, and 91.2% specificity. The proposed technique achieves better sensitivity and specificity than existing methods.
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Agarwal S, Basu I, Kumar M, Salami P, Cash SS. Classification of Seizure Termination Patterns using Deep Learning on intracranial EEG. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2022; 2022:2933-2936. [PMID: 36086368 DOI: 10.1109/embc48229.2022.9871579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Seizure termination has received significantly less attention than initiation and propagation and consequently, remains a poorly understood phase of seizure evolution. Yet, its study may have a significant impact on the development of efficient interventional approaches, i.e., it may be critical for the design of treatments that induce or reproduce termination mechanisms that are triggered in self-terminating seizures. In this work, we aim to study temporal and spectral features of intracranial EEG (iEEG) during epileptic seizures to find time-frequency signatures that can predict the termination patterns. We propose a deep learning model for classification of multi channel iEEG epileptic seizure termination pattern into burst suppression and continuous bursting. We decompose the raw time series seizure data into time-frequency maps using Morlet Wavelet Transform. A Convolution Neural Network (CNN) is then trained on cross-patient time-frequency maps to classify the seizure termination patterns. For evaluation of classification performance, we compared the proposed method with k-Nearest Neighbour (k-NN). The CNN is shown to achieve an accuracy of 90 % and precision of 92 % as compared to 70% and 72% accuracy and precision achieved with the k-NN respectively. The proposed model is thus able to capture the temporal and spatial patterns which results in high performance of the classifier. This method of classification can be used to predict how a particular seizure will end and can potentially inform seizure management and treatment. Clinical relevance- This method establishes a model that can be used to classify seizure termination patterns with an accuracy of 90 % which can assist in better treatment of epilepsy patients.
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Hussein R, Lee S, Ward R. Multi-Channel Vision Transformer for Epileptic Seizure Prediction. Biomedicines 2022; 10:1551. [PMID: 35884859 PMCID: PMC9312955 DOI: 10.3390/biomedicines10071551] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 06/24/2022] [Accepted: 06/27/2022] [Indexed: 02/04/2023] Open
Abstract
Epilepsy is a neurological disorder that causes recurrent seizures and sometimes loss of awareness. Around 30% of epileptic patients continue to have seizures despite taking anti-seizure medication. The ability to predict the future occurrence of seizures would enable the patients to take precautions against probable injuries and administer timely treatment to abort or control impending seizures. In this study, we introduce a Transformer-based approach called Multi-channel Vision Transformer (MViT) for automated and simultaneous learning of the spatio-temporal-spectral features in multi-channel EEG data. Continuous wavelet transform, a simple yet efficient pre-processing approach, is first used for turning the time-series EEG signals into image-like time-frequency representations named Scalograms. Each scalogram is split into a sequence of fixed-size non-overlapping patches, which are then fed as inputs to the MViT for EEG classification. Extensive experiments on three benchmark EEG datasets demonstrate the superiority of the proposed MViT algorithm over the state-of-the-art seizure prediction methods, achieving an average prediction sensitivity of 99.80% for surface EEG and 90.28-91.15% for invasive EEG data.
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Affiliation(s)
- Ramy Hussein
- Center for Advanced Functional Neuroimaging, Stanford University, Stanford, CA 94305, USA
| | - Soojin Lee
- Pacific Parkinson’s Research Centre, University of British Columbia, Vancouver, BC V6T 2B5, Canada;
| | - Rabab Ward
- Electrical and Computer Engineering, University of British Columbia, Vancouver, BC V6T 1Z4, Canada;
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55
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Chung YG, Jeon Y, Yoo S, Kim H, Hwang H. Big data analysis and artificial intelligence in epilepsy - common data model analysis and machine learning-based seizure detection and forecasting. Clin Exp Pediatr 2022; 65:272-282. [PMID: 34844397 PMCID: PMC9171464 DOI: 10.3345/cep.2021.00766] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Accepted: 10/27/2021] [Indexed: 11/27/2022] Open
Abstract
There has been significant interest in big data analysis and artificial intelligence (AI) in medicine. Ever-increasing medical data and advanced computing power have enabled the number of big data analyses and AI studies to increase rapidly. Here we briefly introduce epilepsy, big data, and AI and review big data analysis using a common data model. Studies in which AI has been actively applied, such as those of electroencephalography epileptiform discharge detection, seizure detection, and forecasting, will be reviewed. We will also provide practical suggestions for pediatricians to understand and interpret big data analysis and AI research and work together with technical expertise.
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Affiliation(s)
- Yoon Gi Chung
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seongnam, Korea
| | | | - Sooyoung Yoo
- Office of eHealth Research and Business, Seoul National University Bundang Hospital, Seongnam, Korea
| | - Hunmin Kim
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seongnam, Korea.,Department of Pediatrics, Seoul National University College of Medicine, Seoul, Korea
| | - Hee Hwang
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seongnam, Korea.,Department of Pediatrics, Seoul National University College of Medicine, Seoul, Korea
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56
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Hellar J, Erfanian N, Aazhang B. Epileptic electroencephalography classification using Embedded Dynamic Mode Decomposition. J Neural Eng 2022; 19:036029. [PMID: 35605583 DOI: 10.1088/1741-2552/ac7256] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE Seizure prediction devices for drug-resistant epileptic patients could lead to improved quality of life and new treatment options, but current approaches to classification of electroencephalography (EEG) segments for early identification of the pre-seizure state typically require many features and complex classifiers. We therefore propose a novel spatio-temporal EEG feature set that significantly aids in separation and easy classification of the interictal and preictal states. APPROACH We derive key spectral features from the Embedded Dynamic Mode Decomposition (EmDMD) of the brain state system. This method linearizes the complex spatio-temporal dynamics of the system, describing the dynamics in terms of a spectral basis of modes and eigenvalues. The relative subband spectral power and mean phase locking values of these modes prove to be good indicators of the preictal state that precedes seizure onset. MAIN RESULTS We analyze the linear separability and classification of preictal and interictal states based on our proposed features using seizure data extracted from the CHB-MIT scalp EEG and Kaggle American Epilepsy Society Seizure Prediction Challenge intracranial EEG databases. With a light-weight support vector machine or random forest classifier trained on these features, we classify the preictal state with a sensitivity of up to 92% and specificity of up to 89%. SIGNIFICANCE The EmDMD-derived features separate the preictal and interictal states, improving classification accuracy and motivating further work to incorporate them into seizure prediction algorithms.
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Affiliation(s)
- Jennifer Hellar
- Electrical and Computer Engineering, Rice University, 6100 Main St., Houston, Texas, 77005-1892, UNITED STATES
| | - Negar Erfanian
- Electrical and Computer Engineering, Rice University George R Brown School of Engineering, 6100 Main St., Houston, Texas, 77005, UNITED STATES
| | - Behnaam Aazhang
- Department of Electrical and Computer Engineering, Rice University, George R. Brown School of Engineering, 6100 Main Street, Houston, TX 77005, USA, Houston, Texas, 77005-1892, UNITED STATES
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57
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Choi W, Kim MJ, Yum MS, Jeong DH. Deep Convolutional Gated Recurrent Unit Combined with Attention Mechanism to Classify Pre-Ictal from Interictal EEG with Minimized Number of Channels. J Pers Med 2022; 12:jpm12050763. [PMID: 35629185 PMCID: PMC9147609 DOI: 10.3390/jpm12050763] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 05/05/2022] [Accepted: 05/06/2022] [Indexed: 02/05/2023] Open
Abstract
The early prediction of epileptic seizures is important to provide appropriate treatment because it can notify clinicians in advance. Various EEG-based machine learning techniques have been used for automatic seizure classification based on subject-specific paradigms. However, because subject-specific models tend to perform poorly on new patient data, a generalized model with a cross-patient paradigm is necessary for building a robust seizure diagnosis system. In this study, we proposed a generalized model that combines one-dimensional convolutional layers (1D CNN), gated recurrent unit (GRU) layers, and attention mechanisms to classify preictal and interictal phases. When we trained this model with ten minutes of preictal data, the average accuracy over eight patients was 82.86%, with 80% sensitivity and 85.5% precision, outperforming other state-of-the-art models. In addition, we proposed a novel application of attention mechanisms for channel selection. The personalized model using three channels with the highest attention score from the generalized model performed better than when using the smallest attention score. Based on these results, we proposed a model for generalized seizure predictors and a seizure-monitoring system with a minimized number of EEG channels.
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Affiliation(s)
- WooHyeok Choi
- School of Computer Science and Information Engineering, The Catholic University of Korea, Seoul 14662, Korea;
| | - Min-Jee Kim
- Department of Pediatrics, Asan Medical Center Children’s Hospital, Ulsan University College of Medicine, Seoul 05505, Korea; (M.-J.K.); (M.-S.Y.)
| | - Mi-Sun Yum
- Department of Pediatrics, Asan Medical Center Children’s Hospital, Ulsan University College of Medicine, Seoul 05505, Korea; (M.-J.K.); (M.-S.Y.)
| | - Dong-Hwa Jeong
- Department of Artificial Intelligence, The Catholic University of Korea, Seoul 14662, Korea
- Correspondence:
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58
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Saravanakumar S, Saravanan T. An effective convolutional neural network-based stacked long short-term memory approach for automated Alzheimer’s disease prediction. JOURNAL OF INTELLIGENT & FUZZY SYSTEMS 2022. [DOI: 10.3233/jifs-212797] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
In today’s world, Alzheimer’s Disease (AD) is one of the prevalent neurological diseases where early disease prediction can significantly enhance the compatibility of patient treatment. Nevertheless, accurate diagnosis and optimal feature selection play a vital challenge in AD detection. Most of the existing diagnosis systems failed to attain superior prediction accuracy and precision rate. In order to mitigate these constraints, a new efficient Convolutional Neural Network-based Stacked Long Short-Term Memory (CNN-SLSTM) methodology has been proposed in this paper. The key objective of the proposed model is to examine the brain’s condition and evaluate the changes that occur throughout the interracial period. The proposed model includes multi-feature learning and categorization in which the raw Electroencephalography (EEG) data will be passed via the feature extractor to decrease the computing complexity and execution time. Afterward, the SLSTM network is constructed with completely linked layer and activation layers to record the temporal relationship between features and the next stage of AD. The proposed CNN-SLSTM model can be trained using real-time EEG sensor data. The performance results clearly apparent that the proposed model can efficiently predict the AD with superior accuracy of 98.67% and precision of 98.86% when compared with existing state-of-the-art techniques.
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Affiliation(s)
- S. Saravanakumar
- Department of Computer Science and Engineering, Adithya Institute of Technology, Coimbatore, India
| | - T. Saravanan
- Department of Computer Science and Engineering, St Martins Engineering college Telangana, India
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59
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Domain adaptation for epileptic EEG classification using adversarial learning and Riemannian manifold. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103555] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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60
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Yu Z, Albera L, Jeannes RLB, Kachenoura A, Karfoul A, Yang C, Shu H. Epileptic Seizure Prediction Using Deep Neural Networks via Transfer Learning and Multi-Feature Fusion. Int J Neural Syst 2022; 32:2250032. [DOI: 10.1142/s0129065722500320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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61
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Song Z, Deng B, Wang J, Yi G. An EEG-based systematic explainable detection framework for probing and localizing abnormal patterns in Alzheimer's disease. J Neural Eng 2022; 19. [PMID: 35453136 DOI: 10.1088/1741-2552/ac697d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 04/22/2022] [Indexed: 11/12/2022]
Abstract
OBJECTIVE Electroencephalography (EEG) is a potential source of downstream biomarkers for the early diagnosis of Alzheimer's disease (AD) due to its low-cost, non-invasive, and portable advantages. Accurately detecting AD-induced patterns from EEG signals is essential for understanding AD-related neurodegeneration at the EEG level and further evaluating the risk of AD at an early stage. This paper proposes a deep learning-based, functional explanatory framework that probes AD abnormalities from short-sequence EEG data. APPROACH The framework is a learning-based automatic detection system consisting of three encoding pathways that analyze EEG signals in frequency, complexity, and synchronous domains. We integrated the proposed EEG descriptors with the neural network components into one learning system to detect AD patterns. A transfer learning-based model was used to learn the deep representations, and a modified generative adversarial module was attached to the model to overcome feature sparsity. Furthermore, we utilized activation mapping to obtain the AD-related neurodegeneration at brain rhythm, dynamic complexity, and functional connectivity levels. MAIN RESULTS The proposed framework can accurately (100%) detect AD patterns based on our raw EEG recordings without delicate preprocessing. Meanwhile, the system indicates that 1) the power of different brain rhythms exhibits abnormal in the frontal lobes of AD patients, and such abnormality spreads to central lobes in the alpha and beta rhythms, 2) the difference in nonlinear complexity varies with the temporal scales, and 3) all the connections of pair-wise brain regions except bilateral temporal connectivity are weak in AD patterns. The proposed method outperforms other related methods in detection performance. SIGNIFICANCE We provide a new method for revealing abnormalities and corresponding localizations in different feature domains of EEG from AD patients. This study is a significant foundation for our future work on identifying individuals at high risk of AD at an early stage.
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Affiliation(s)
- Zhenxi Song
- Tianjin University, No.92 Weijin Road, Nankai District, Tianjin 300072, China, Tianjin, 300072, CHINA
| | - Bin Deng
- Tianjin University, No.92 Weijin Road, Nankai District, Tianjin 300072, China, Tianjin, Tianjin, 300072, CHINA
| | - Jiang Wang
- School of Electrical Engineering and Automation, Tianjin University, No.92 Weijin Road, Nankai District, Tianjin 300072, China, P. R. China, Tianjin, Tianjin, 300072, CHINA
| | - Guosheng Yi
- School of Electrical and Information Engineering, Tianjin University, No.92 Weijin Road, Nankai District, Tianjin 300072, China, Tianjin, Tianjin, 300072, CHINA
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62
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Gao Y, Chen X, Liu A, Liang D, Wu L, Qian R, Xie H, Zhang Y. Pediatric Seizure Prediction in Scalp EEG Using a Multi-Scale Neural Network With Dilated Convolutions. IEEE JOURNAL OF TRANSLATIONAL ENGINEERING IN HEALTH AND MEDICINE 2022; 10:4900209. [PMID: 35356539 PMCID: PMC8936768 DOI: 10.1109/jtehm.2022.3144037] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Revised: 12/15/2021] [Accepted: 01/03/2022] [Indexed: 11/09/2022]
Abstract
Objective: Epileptic seizure prediction based on scalp electroencephalogram (EEG) is of great significance for improving the quality of life of patients with epilepsy. In recent years, a number of studies based on deep learning methods have been proposed to address this issue and achieve excellent performance. However, most studies on epileptic seizure prediction by EEG fail to take full advantage of temporal-spatial multi-scale features of EEG signals, while EEG signals carry information in multiple temporal and spatial scales. To this end, in this study, we proposed an end-to-end framework by using a temporal-spatial multi-scale convolutional neural network with dilated convolutions for patient-specific seizure prediction. Methods: Specifically, the model divides the EEG processing pipeline into two stages: the temporal multi-scale stage and the spatial multi-scale stage. In each stage, we firstly extract the multi-scale features along the corresponding dimension. A dilated convolution block is then conducted on these features to expand our model's receptive fields further and systematically aggregate global information. Furthermore, we adopt a feature-weighted fusion strategy based on an attention mechanism to achieve better feature fusion and eliminate redundancy in the dilated convolution block. Results: The proposed model obtains an average sensitivity of 93.3%, an average false prediction rate of 0.007 per hour, and an average proportion of time-in-warning of 6.3% testing in 16 patients from the CHB-MIT dataset with the leave-one-out method. Conclusion: Our model achieves superior performance in comparison to state-of-the-art methods, providing a promising solution for EEG-based seizure prediction.
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Affiliation(s)
- Yikai Gao
- School of Information Science and TechnologyUniversity of Science and Technology of China (USTC) Hefei 230027 China
| | - Xun Chen
- Epilepsy Center, Department of NeurosurgeryThe First Affiliated Hospital of USTC, Division of Life Sciences and MedicineUniversity of Science and Technology of China, Hefei Anhui 230001 China.,USTC IAT-Huami Joint Laboratory for Brain-Machine IntelligenceInstitute of Advanced Technology, University of Science and Technology of China Hefei 230088 China
| | - Aiping Liu
- School of Information Science and TechnologyUniversity of Science and Technology of China (USTC) Hefei 230027 China.,USTC IAT-Huami Joint Laboratory for Brain-Machine IntelligenceInstitute of Advanced Technology, University of Science and Technology of China Hefei 230088 China
| | - Deng Liang
- School of Information Science and TechnologyUniversity of Science and Technology of China (USTC) Hefei 230027 China
| | - Le Wu
- School of Information Science and TechnologyUniversity of Science and Technology of China (USTC) Hefei 230027 China
| | - Ruobing Qian
- Epilepsy Center, Department of NeurosurgeryThe First Affiliated Hospital of USTC, Division of Life Sciences and MedicineUniversity of Science and Technology of China, Hefei Anhui 230001 China
| | - Hongtao Xie
- School of Information Science and TechnologyUniversity of Science and Technology of China (USTC) Hefei 230027 China
| | - Yongdong Zhang
- School of Information Science and TechnologyUniversity of Science and Technology of China (USTC) Hefei 230027 China
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63
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E P Moghaddam D, Sheth S, Haneef Z, Gavvala J, Aazhang B. Epileptic seizure prediction using spectral width of the covariance matrix. J Neural Eng 2022; 19. [PMID: 35320787 DOI: 10.1088/1741-2552/ac6063] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2022] [Accepted: 03/23/2022] [Indexed: 11/11/2022]
Abstract
Epilepsy is a common neurological disorder in which patients suffer from sudden and unpredictable seizures. Seizures are caused by excessive and abnormal neuronal activity. Different methods have been employed to investigate electroencephalogram (EEG) data in patients with epilepsy. This paper introduces a simple yet accurate array-based method to study and predict seizures. We use the CHB-MIT dataset (all 24 cases), which includes scalp EEG recordings. The proposed method is based on the random matrix theory. After applying wavelet decomposition to denoise the data, we analyze the spatial coherence of the epileptic recordings by looking at the width of the covariance matrix eigenvalue distribution at different time and frequency bins. We train patient-specific support vector machine (SVM) classifiers to distinguish between interictal and preictal data with high performance and a false prediction rate as low as 0.09/h. The proposed technique achieves an average accuracy, specificity, sensitivity, and area under the curve (AUC) of 99.05%, 93.56%, 99.09%, and 0.99, respectively. Our proposed method outperforms state-of-the-art works in terms of sensitivity while maintaining a low false prediction rate. Also, in contrast to neural networks, which may achieve high performance, this work provides high sensitivity without compromising interpretability.
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Affiliation(s)
- Dorsa E P Moghaddam
- Electrical and Computer Engineering, Rice University, 6100 Main St, Houston, TX 77005, Houston, Texas, 77005, UNITED STATES
| | - Sameer Sheth
- Neurosurgery, Baylor College of Medicine, 7200 Cambridge, Houston, Texas, 77005, UNITED STATES
| | - Zulfi Haneef
- Department of Neurology, Baylor College of Medicine, 1 Baylor Plaza, Houston, TX 77030, Houston, Texas, 77030, UNITED STATES
| | - Jay Gavvala
- Neurology-Neurophysiology, Baylor College of Medicine, Baylor College of Medicine Medical Center, McNair Campus, 7200 Cambridge St., 9th Floor, MS: BCM609 Houston, TX 77030, Houston, Texas, 77030 , UNITED STATES
| | - Behnaam Aazhang
- Department of Electrical and Computer Engineering, Rice University, George R. Brown School of Engineering, 6100 Main Street, Houston, TX 77005, USA, Houston, 77005, UNITED STATES
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64
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Pinto M, Coelho T, Leal A, Lopes F, Dourado A, Martins P, Teixeira C. Interpretable EEG seizure prediction using a multiobjective evolutionary algorithm. Sci Rep 2022; 12:4420. [PMID: 35292691 PMCID: PMC8924190 DOI: 10.1038/s41598-022-08322-w] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 02/22/2022] [Indexed: 11/28/2022] Open
Abstract
Seizure prediction might be the solution to tackle the apparent unpredictability of seizures in patients with drug-resistant epilepsy, which comprise about a third of all patients with epilepsy. Designing seizure prediction models involves defining the pre-ictal period, a transition stage between inter-ictal brain activity and the seizure discharge. This period is typically a fixed interval, with some recent studies reporting the evaluation of different patient-specific pre-ictal intervals. Recently, researchers have aimed to determine the pre-ictal period, a transition stage between regular brain activity and a seizure. Authors have been using deep learning models given the ability of such models to automatically perform pre-processing, feature extraction, classification, and handling temporal and spatial dependencies. As these approaches create black-box models, clinicians may not have sufficient trust to use them in high-stake decisions. By considering these problems, we developed an evolutionary seizure prediction model that identifies the best set of features while automatically searching for the pre-ictal period and accounting for patient comfort. This methodology provides patient-specific interpretable insights, which might contribute to a better understanding of seizure generation processes and explain the algorithm's decisions. We tested our methodology on 238 seizures and 3687 h of continuous data, recorded on scalp recordings from 93 patients with several types of focal and generalised epilepsies. We compared the results with a seizure surrogate predictor and obtained a performance above chance for 32% patients. We also compared our results with a control method based on the standard machine learning pipeline (pre-processing, feature extraction, classifier training, and post-processing), where the control marginally outperformed our approach by validating 35% of the patients. In total, 54 patients performed above chance for at least one method: our methodology or the control one. Of these 54 patients, 21 ([Formula: see text]38%) were solely validated by our methodology, while 24 ([Formula: see text]44%) were only validated by the control method. These findings may evidence the need for different methodologies concerning different patients.
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Affiliation(s)
- Mauro Pinto
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal.
| | - Tiago Coelho
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
| | - Adriana Leal
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
| | - Fábio Lopes
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
- Epilepsy Center, Department Neurosurgery, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - António Dourado
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
| | - Pedro Martins
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
| | - César Teixeira
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
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65
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Epileptic Seizure Detection with Hybrid Time-Frequency EEG Input: A Deep Learning Approach. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:8724536. [PMID: 35211188 PMCID: PMC8863458 DOI: 10.1155/2022/8724536] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/26/2021] [Revised: 01/19/2022] [Accepted: 01/27/2022] [Indexed: 11/29/2022]
Abstract
The precise detection of epileptic seizure helps to prevent the serious consequences of seizures. As the electroencephalogram (EEG) reflects the brain activity of patients effectively, it has been widely used in epileptic seizure detection in the past decades. Recently, deep learning-based detection methods which automatically learn features from the EEG signals have attracted much attention. However, with deep learning-based detection methods, different input formats of EEG signals will lead to different detection performances. In this paper, we propose a deep learning-based epileptic seizure detection method with hybrid input formats of EEG signals, i.e., original EEG, Fourier transform of EEG, short-time Fourier transform of EEG, and wavelet transform of EEG. Convolutional neural networks (CNNs) are designed for extracting latent features from these inputs. A feature fusion mechanism is applied to integrate the learned features to generate a more stable syncretic feature for seizure detection. The experimental results show that our proposed hybrid method is effective to improve the seizure detection performance in few-shot scenarios.
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66
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Liang D, Liu A, Li C, Liu J, Chen X. A novel consistency-based training strategy for seizure prediction. J Neurosci Methods 2022; 372:109557. [PMID: 35276242 DOI: 10.1016/j.jneumeth.2022.109557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 02/12/2022] [Accepted: 03/04/2022] [Indexed: 11/15/2022]
Abstract
BACKGROUND Early prediction of epilepsy seizures can warn the patients to take precautions and improve their lives significantly. In recent years, deep learning has become increasingly predominant in seizure prediction for its outstanding performance. With the aim of predicting unseen seizures, it is essential to guarantee the generalization ability of the model, especially considering the non-stationary nature of EEG and the scarcity of seizure events in EEG recordings. Stability training against extra perturbations is an intuitive and effective way to improve the model's ability to generalize. Though a great number of deep learning methods have been developed for seizure prediction, their strategies to increase generalization performance focus on improving the model's architecture itself, and few of them pay attention to the stability of the model against small perturbations. NEW METHOD In this study, we propose a novel consistency-based training strategy to address this issue. The proposed strategy underlines that a robust model should maintain consistent results for the same input under extra perturbations. Specifically, during training, we use stochastic augmentations to make the input vary from iteration to iteration and consider the output as a stochastic variable. Then a consistency constraint is constructed to penalize the difference between the current output and previous outputs. In this way, the generalization ability of the model will be fully enhanced. RESULTS To better verify the effectiveness of our proposed strategy, we implement it in two state-of-the-art models with public-available codes, including STFT CNN and Multi-view CNN. Notably, we compare with the first baseline on a scalp EEG dataset and the other on an intracranial EEG dataset. The results show that our strategy could improve the performance significantly for both of them. COMPARISON WITH EXISTING METHODS Our strategy has increased the sensitivity by 7.1% and reduced the false prediction rate by 0.12/h on the first baseline while improving the AUC by 0.020 on the second baseline. CONCLUSIONS This study is easy to implement, providing a new solution to enhance the performance of seizure prediction.
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Affiliation(s)
- Deng Liang
- School of Information Science and Technology, University of Science and Technology of China, Hefei 230027, China
| | - Aiping Liu
- Epilepsy Center, Department of Neurosurgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, China.
| | - Chang Li
- Department of Biomedical Engineering, Hefei University of Technology, Hefei 230009, China
| | - Jun Liu
- School of Information Science and Technology, University of Science and Technology of China, Hefei 230027, China
| | - Xun Chen
- School of Information Science and Technology, University of Science and Technology of China, Hefei 230027, China; Epilepsy Center, Department of Neurosurgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, China; USTC IAT-Huami Joint Laboratory for Brain-Machine Intelligence, Institute of Advanced Technology, University of Science and Technology of China, Hefei 230088, China
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Abstract
Epilepsy is a chronic neurological disease characterized by a large electrical explosion that is excessive and uncontrolled, as defined by the world health organization. It is an anomaly that affects people of all ages. An electroencephalogram (EEG) of the brain activity is a widely known method designed as a reference dedicated to study epileptic seizures and to record the changes in brain electrical activity. Therefore, the prediction and early detection of epilepsy is necessary to provide timely preventive interventions that allow patients to be relieved from the harmful consequences of epileptic seizures. Despite decades of research, the prediction of these seizures with accuracy remains an unresolved problem. In this article, we have proposed five deep learning models on intracranial electroencephalogram (iEEG) datasets with the aim of automatically predicting epileptic seizures. The proposed models are based on the Convolutional Neural Network (CNN) model, the fusion of the two CNNs (2-CNN), the fusion of the three CNNs (3-CNN), the fusion of the four CNNs (4-CNN), and transfer learning with ResNet50. The experimental results show that our proposed methods based on 3-CNN and 4-CNN gave the best values. They both achieve an accuracy value of 95%. Finally, our proposed methods are compared with previous studies, which confirm that seizure prediction performance was significantly improved.
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Rout SK, Sahani M, Dora C, Biswal PK, Biswal B. An efficient epileptic seizure classification system using empirical wavelet transform and multi-fuse reduced deep convolutional neural network with digital implementation. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Dissanayake T, Fernando T, Denman S, Sridharan S, Fookes C. Geometric Deep Learning for Subject Independent Epileptic Seizure Prediction Using Scalp EEG Signals. IEEE J Biomed Health Inform 2022; 26:527-538. [PMID: 34314363 DOI: 10.1109/jsen.2021.3057076] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Recently, researchers in the biomedical community have introduced deep learning-based epileptic seizure prediction models using electroencephalograms (EEGs) that can anticipate an epileptic seizure by differentiating between the pre-ictal and interictal stages of the subject's brain. Despite having the appearance of a typical anomaly detection task, this problem is complicated by subject-specific characteristics in EEG data. Therefore, studies that investigate seizure prediction widely employ subject-specific models. However, this approach is not suitable in situations where a target subject has limited (or no) data for training. Subject-independent models can address this issue by learning to predict seizures from multiple subjects, and therefore are of greater value in practice. In this study, we propose a subject-independent seizure predictor using Geometric Deep Learning (GDL). In the first stage of our GDL-based method we use graphs derived from physical connections in the EEG grid. We subsequently seek to synthesize subject-specific graphs using deep learning. The models proposed in both stages achieve state-of-the-art performance using a one-hour early seizure prediction window on two benchmark datasets (CHB-MIT-EEG: 95.38% with 23 subjects and Siena-EEG: 96.05% with 15 subjects). To the best of our knowledge, this is the first study that proposes synthesizing subject-specific graphs for seizure prediction. Furthermore, through model interpretation we outline how this method can potentially contribute towards Scalp EEG-based seizure localization.
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70
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Semisupervised Seizure Prediction in Scalp EEG Using Consistency Regularization. JOURNAL OF HEALTHCARE ENGINEERING 2022; 2022:1573076. [PMID: 35126902 PMCID: PMC8808146 DOI: 10.1155/2022/1573076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Revised: 12/20/2021] [Accepted: 01/05/2022] [Indexed: 11/18/2022]
Abstract
Early prediction of epilepsy seizures can warn the patients to take precautions and improve their lives significantly. In recent years, deep learning has become increasingly predominant in seizure prediction. However, existing deep learning-based approaches in this field require a great deal of labeled data to guarantee performance. At the same time, labeling EEG signals does require the expertise of an experienced pathologist and is incredibly time-consuming. To address this issue, we propose a novel Consistency-based Semisupervised Seizure Prediction Model (CSSPM), where only a fraction of training data is labeled. Our method is based on the principle of consistency regularization, which underlines that a robust model should maintain consistent results for the same input under extra perturbations. Specifically, by using stochastic augmentation and dropout, we consider the entire neural network as a stochastic model and apply a consistency constraint to penalize the difference between the current prediction and previous predictions. In this way, unlabeled data could be fully utilized to improve the decision boundary and enhance prediction performance. Compared with existing studies requiring all training data to be labeled, the proposed method only needs a small portion of data to be labeled while still achieving satisfactory results. Our method provides a promising solution to alleviate the labeling cost for real-world applications.
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71
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Peng P, Song Y, Yang L, Wei H. Seizure Prediction in EEG Signals Using STFT and Domain Adaptation. Front Neurosci 2022; 15:825434. [PMID: 35115906 PMCID: PMC8805457 DOI: 10.3389/fnins.2021.825434] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 12/22/2021] [Indexed: 12/04/2022] Open
Abstract
Epileptic seizure prediction is one of the most used therapeutic adjuvant strategies for drug-resistant epilepsy. Conventional approaches commonly collect training and testing samples from the same patient due to inter-individual variability. However, the challenging problem of domain shift between various subjects remains unsolved, resulting in a low conversion rate to the clinic. In this work, a domain adaptation (DA)-based model is proposed to circumvent this issue. The short-time Fourier transform (STFT) is employed to extract the time-frequency features from raw EEG data, and an autoencoder is developed to map these features into high-dimensional space. By minimizing the inter-domain distance in the embedding space, this model learns the domain-invariant information, such that the generalization ability is improved by distribution alignment. Besides, to increase the feasibility of its application, this work mimics the data distribution under the clinical sampling situation and tests the model under this condition, which is the first study that adopts the assessment strategy. Experimental results on both intracranial and scalp EEG databases demonstrate that this method can minimize the domain gap effectively compared with previous approaches.
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Affiliation(s)
- Peizhen Peng
- Key Laboratory of Measurement and Control of Control Science and Engineering (CSE), Ministry of Education, School of Automation, Southeast University, Nanjing, China
| | - Yang Song
- State Grid Nanjing Power Supply Company, Nanjing, China
| | - Lu Yang
- Epilepsy Center, the Affiliated Brain Hospital of Nanjing Medical University, Nanjing, China
| | - Haikun Wei
- Key Laboratory of Measurement and Control of Control Science and Engineering (CSE), Ministry of Education, School of Automation, Southeast University, Nanjing, China
- *Correspondence: Haikun Wei
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72
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Cherian R, Kanaga EG. Theoretical and Methodological Analysis of EEG based Seizure Detection and Prediction: An Exhaustive Review. J Neurosci Methods 2022; 369:109483. [DOI: 10.1016/j.jneumeth.2022.109483] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 01/13/2022] [Accepted: 01/13/2022] [Indexed: 02/07/2023]
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Machine Learning-Based Epileptic Seizure Detection Methods Using Wavelet and EMD-Based Decomposition Techniques: A Review. SENSORS 2021; 21:s21248485. [PMID: 34960577 PMCID: PMC8703715 DOI: 10.3390/s21248485] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 12/13/2021] [Accepted: 12/14/2021] [Indexed: 11/25/2022]
Abstract
Epileptic seizures are temporary episodes of convulsions, where approximately 70 percent of the diagnosed population can successfully manage their condition with proper medication and lead a normal life. Over 50 million people worldwide are affected by some form of epileptic seizures, and their accurate detection can help millions in the proper management of this condition. Increasing research in machine learning has made a great impact on biomedical signal processing and especially in electroencephalogram (EEG) data analysis. The availability of various feature extraction techniques and classification methods makes it difficult to choose the most suitable combination for resource-efficient and correct detection. This paper intends to review the relevant studies of wavelet and empirical mode decomposition-based feature extraction techniques used for seizure detection in epileptic EEG data. The articles were chosen for review based on their Journal Citation Report, feature selection methods, and classifiers used. The high-dimensional EEG data falls under the category of ‘3N’ biosignals—nonstationary, nonlinear, and noisy; hence, two popular classifiers, namely random forest and support vector machine, were taken for review, as they are capable of handling high-dimensional data and have a low risk of over-fitting. The main metrics used are sensitivity, specificity, and accuracy; hence, some papers reviewed were excluded due to insufficient metrics. To evaluate the overall performances of the reviewed papers, a simple mean value of all metrics was used. This review indicates that the system that used a Stockwell transform wavelet variant as a feature extractor and SVM classifiers led to a potentially better result.
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74
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Li Z, Fields M, Panov F, Ghatan S, Yener B, Marcuse L. Deep Learning of Simultaneous Intracranial and Scalp EEG for Prediction, Detection, and Lateralization of Mesial Temporal Lobe Seizures. Front Neurol 2021; 12:705119. [PMID: 34867707 PMCID: PMC8632629 DOI: 10.3389/fneur.2021.705119] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Accepted: 08/26/2021] [Indexed: 11/24/2022] Open
Abstract
In people with drug resistant epilepsy (DRE), seizures are unpredictable, often occurring with little or no warning. The unpredictability causes anxiety and much of the morbidity and mortality of seizures. In this work, 102 seizures of mesial temporal lobe onset were analyzed from 19 patients with DRE who had simultaneous intracranial EEG (iEEG) and scalp EEG as part of their surgical evaluation. The first aim of this paper was to develop machine learning models for seizure prediction and detection (i) using iEEG only, (ii) scalp EEG only and (iii) jointly analyzing both iEEG and scalp EEG. The second goal was to test if machine learning could detect a seizure on scalp EEG when that seizure was not detectable by the human eye (surface negative) but was seen in iEEG. The final question was to determine if the deep learning algorithm could correctly lateralize the seizure onset. The seizure detection and prediction problems were addressed jointly by training Deep Neural Networks (DNN) on 4 classes: non-seizure, pre-seizure, left mesial temporal onset seizure and right mesial temporal onset seizure. To address these aims, the classification accuracy was tested using two deep neural networks (DNN) against 3 different types of similarity graphs which used different time series of EEG data. The convolutional neural network (CNN) with the Waxman similarity graph yielded the highest accuracy across all EEG data (iEEG, scalp EEG and combined). Specifically, 1 second epochs of EEG were correctly assigned to their seizure, pre-seizure, or non-seizure category over 98% of the time. Importantly, the pre-seizure state was classified correctly in the vast majority of epochs (>97%). Detection from scalp EEG data alone of surface negative seizures and the seizures with the delayed scalp onset (the surface negative portion) was over 97%. In addition, the model accurately lateralized all of the seizures from scalp data, including the surface negative seizures. This work suggests that highly accurate seizure prediction and detection is feasible using either intracranial or scalp EEG data. Furthermore, surface negative seizures can be accurately predicted, detected and lateralized with machine learning even when they are not visible to the human eye.
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Affiliation(s)
- Zan Li
- Department of Electrical, Computer, and Systems Engineering (ECSE), Rensselaer Polytechnic Institute, Troy, NY, United States
| | - Madeline Fields
- Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, United States
| | - Fedor Panov
- Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, United States
| | - Saadi Ghatan
- Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, United States
| | - Bülent Yener
- Department of Computer Science (CS) and Electrical, Computer, and Systems Engineering (ECSE), Rensselaer Polytechnic Institute, Troy, NY, United States
| | - Lara Marcuse
- Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, United States
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75
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Wang Z, Yang J, Wu H, Zhu J, Sawan M. Power efficient refined seizure prediction algorithm based on an enhanced benchmarking. Sci Rep 2021; 11:23498. [PMID: 34873202 PMCID: PMC8648730 DOI: 10.1038/s41598-021-02798-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 11/22/2021] [Indexed: 11/18/2022] Open
Abstract
Deep learning techniques have led to significant advancements in seizure prediction research. However, corresponding used benchmarks are not uniform in published results. Moreover, inappropriate training and evaluation processes used in various work create overfitted models, making prediction performance fluctuate or unreliable. In this study, we analyzed the various data preparation methods, dataset partition methods in related works, and explained the corresponding impacts to the prediction algorithms. Then we applied a robust processing procedure that considers the appropriate sampling parameters and the leave-one-out cross-validation method to avoid possible overfitting and provide prerequisites for ease benchmarking. Moreover, a deep learning architecture takes advantage of a one-dimension convolutional neural network and a bi-directional long short-term memory network is proposed for seizure prediction. The architecture achieves 77.6% accuracy, 82.7% sensitivity, and 72.4% specificity, and it outperforms the indicators of other prior-art works. The proposed model is also hardware friendly; it has 6.274 k parameters and requires only 12.825 M floating-point operations, which is advantageous for memory and power constrained device implementations.
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Affiliation(s)
- Ziyu Wang
- Cutting-Edge Net of Biomedical Research and INnovation (CenBRAIN), School of Engineering, Westlake University, Hangzhou, Zhejiang, China
| | - Jie Yang
- Cutting-Edge Net of Biomedical Research and INnovation (CenBRAIN), School of Engineering, Westlake University, Hangzhou, Zhejiang, China.
| | - Hemmings Wu
- Department of Neurosurgery, Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
| | - Junming Zhu
- Department of Neurosurgery, Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
| | - Mohamad Sawan
- Cutting-Edge Net of Biomedical Research and INnovation (CenBRAIN), School of Engineering, Westlake University, Hangzhou, Zhejiang, China.
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76
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Detection of preictal state in epileptic seizures using ensemble classifier. Epilepsy Res 2021; 178:106818. [PMID: 34847427 DOI: 10.1016/j.eplepsyres.2021.106818] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 10/10/2021] [Accepted: 11/12/2021] [Indexed: 12/30/2022]
Abstract
OBJECTIVE Epilepsy affected patient experiences more than one frequency seizures which can not be treated with medication or surgical procedures in 30% of the cases. Therefore, an early prediction of these seizures is inevitable for these cases to control them with therapeutic interventions. METHODS In recent years, researchers have proposed multiple deep learning based methods for detection of preictal state in electroencephalogram (EEG) signals, however, accurate detection of start of preictal state remains a challenge. We propose a novel ensemble classifier based method that gets the comprehensive feature set as input and combines three different classifiers to detect the preictal state. RESULTS We have applied the proposed method on the publicly available scalp EEG dataset CHBMIT of 22 subjects. An average accuracy of 94.31% with sensitivity and specificity of 94.73% and 93.72% respectively has been achieved with the method proposed in this study. CONCLUSIONS Proposed study utilizes the preprocessing techniques for noise removal, combines deep learning based and handcrafted features and an ensemble classifier for detection of start of preictal state. Proposed method gives better results in terms of accuracy, sensitivity, and specificity.
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77
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Maimaiti B, Meng H, Lv Y, Qiu J, Zhu Z, Xie Y, Li Y, Yu-Cheng, Zhao W, Liu J, Li M. An Overview of EEG-based Machine Learning Methods in Seizure Prediction and Opportunities for Neurologists in this Field. Neuroscience 2021; 481:197-218. [PMID: 34793938 DOI: 10.1016/j.neuroscience.2021.11.017] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 11/04/2021] [Accepted: 11/08/2021] [Indexed: 11/16/2022]
Abstract
The unpredictability of epileptic seizures is one of the most problematic aspects of the field of epilepsy. Methods or devices capable of detecting seizures minutes before they occur may help prevent injury or even death and significantly improve the quality of life. Machine learning (ML) is an emerging technology that can markedly enhance algorithm performance by interpreting data. ML has gained increasing attention from medical researchers in recent years. Its epilepsy applications range from the localization of the epileptic region, predicting the medical or surgical outcome of epilepsy, and automated electroencephalography (EEG) analysis to seizure prediction. While ML has good prospects with regard to detecting epileptic seizures via EEG signals, many clinicians are still unfamiliar with this field. This work briefly summarizes the history and recent significant progress made in this field and clarifies the essential components of the automatic seizure detection system using ML methodologies for clinicians. This review also proposes how neurologists can actively contribute to ensure improvements in seizure prediction using EEG-based ML.
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Affiliation(s)
- Buajieerguli Maimaiti
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Hongmei Meng
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China.
| | - Yudan Lv
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Jiqing Qiu
- Department of Neurological Surgery, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Zhanpeng Zhu
- Department of Neurological Surgery, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Yinyin Xie
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Yue Li
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Yu-Cheng
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Weixuan Zhao
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Jiayu Liu
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Mingyang Li
- Department of Communication Engineering, Jilin University, Changchun, Jilin, People's Republic of China.
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78
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Rasheed K, Qadir J, O’Brien TJ, Kuhlmann L, Razi A. A Generative Model to Synthesize EEG Data for Epileptic Seizure Prediction. IEEE Trans Neural Syst Rehabil Eng 2021; 29:2322-2332. [PMID: 34727036 PMCID: PMC8592500 DOI: 10.1109/tnsre.2021.3125023] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Revised: 09/05/2021] [Accepted: 10/31/2021] [Indexed: 12/04/2022]
Abstract
OBJECTIVE Scarcity of good quality electroencephalography (EEG) data is one of the roadblocks for accurate seizure prediction. This work proposes a deep convolutional generative adversarial network (DCGAN) to generate synthetic EEG data. Another objective of our study is to use transfer-learning (TL) for evaluating the performance of four well-known deep-learning (DL) models to predict epileptic seizure. METHODS We proposed an algorithm that generate synthetic data using DCGAN trained on real EEG data in a patient-specific manner. We validate quality of generated data using one-class SVM and a new proposal namely convolutional epileptic seizure predictor (CESP). We evaluate performance of VGG16, VGG19, ResNet50, and Inceptionv3 trained on augmented data using TL with average time of 10 min between true prediction and seizure onset samples. RESULTS The CESP model achieves sensitivity of 78.11% and 88.21%, and false prediction rate of 0.27/h and 0.14/h for training on synthesized and testing on real Epilepsyecosystem and CHB-MIT datasets, respectively. Using TL and augmented data, Inceptionv3 achieved highest accuracy with sensitivity of 90.03% and 0.03 FPR/h. With the proposed data augmentation method prediction results of CESP model and Inceptionv3 increased by 4-5% as compared to state-of-the-art augmentation techniques. CONCLUSION The performance of CESP shows that synthetic data acquired association between features and labels very well and by using the augmented data CESP predicted better than chance level for both datasets. SIGNIFICANCE The proposed DCGAN can be used to generate synthetic data to increase the prediction performance and to overcome good quality data scarcity issue.
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Affiliation(s)
- Khansa Rasheed
- Department of Electrical EngineeringInformation Technology University (ITU)PunjabLahore54000Pakistan
| | - Junaid Qadir
- Department of Electrical EngineeringInformation Technology University (ITU)PunjabLahore54000Pakistan
- Department of Computer Science and EngineeringCollege of EngineeringQatar UniversityDohaQatar
| | - Terence J. O’Brien
- Department of NeuroscienceCentral Clinical SchoolMonash UniversityMelbourneVIC3800Australia
| | - Levin Kuhlmann
- Faculty of Information TechnologyMonash UniversityClaytonVIC3800Australia
| | - Adeel Razi
- Turner Institute for Brain and Mental Health and Monash Biomedical Imaging, Monash UniversityClaytonVIC3800Australia
- Wellcome Centre for Human NeuroimagingUCLLondonWC1E 6BTU.K
- CIFAR Azrieli Global Scholars ProgramCIFARTorontoONM5G 1M1Canada
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79
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Doshi R, Sankar AR, Nagaraj K, Vazhayil V, Nagaraj C, Rao M. EEG Driven Autonomous Injection System For An Epileptic Neuroimaging Application. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2021; 2021:1480-1486. [PMID: 34891565 DOI: 10.1109/embc46164.2021.9629573] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Seizure episodes are frequently observed for adults and children suffering from medically refractory epilepsy and the events remain debilitating unless treated with a more comprehensive approach. Ictal perfusion studies with single-photon emission computed tomography (SPECT) is one of the non invasive imaging modality that has been extensively used to adequately localize the seizure focus. Current practices include the tracer injection within a short time interval at the onset of seizure to generate desirable SPECT scan quality with accurate information on foci region. However, the onset of a seizure is a highly unpredictable event and also with added subclinical events, the overall procedure makes it difficult to administer the tracer manually within the ideal time frame.Hence a complete autonomous injection of radioactive tracer element without manual intervention is expected to offer a highly accurate epileptical focus region and aids in further management of the patient. Electroencephalogram (EEG) physiological signals in the preictal phase contain sufficient indicators to predict the seizure event. The proposed injection system works on the seizure prediction model from the EEG signals to release the dosage, making the system completely autonomous in action. The accuracy of the prediction model based on the publicly available seizure embedded EEG datasets was designed to achieve 94% accuracy, and the model was deployed on an edge system. The syringe based injection system was characterized to emulate dosage release action with minimum volumetric error, and low injection time, on predicting seizure Ictal event from the EEG signal. The proposed system is a step towards developing an autonomous injection system for epileptic neuroimaging applications in hospital settings.Clinical relevance- Autonomous injection of tracer dosage for obtaining accurate and high quality Ictal SPECT scan results is preferred over the manual operation in clinical and hospital residential settings as a part of pre-surgical evaluations. The EEG signal based early prediction of seizure ensures adequate time for radioactive tracer element to reach the brain cells and eventually helps to accurately localize the onset region of seizure in the brain. The EEG driven automated injection system for the noninvasive Ictal SPECT method is clinically important as a pre-surgical evaluation in MRI negative or discordant cases for further surgical actions.
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80
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Bhattacharya A, Baweja T, Karri SPK. Epileptic Seizure Prediction Using Deep Transformer Model. Int J Neural Syst 2021; 32:2150058. [PMID: 34720065 DOI: 10.1142/s0129065721500581] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The electroencephalogram (EEG) is the most promising and efficient technique to study epilepsy and record all the electrical activity going in our brain. Automated screening of epilepsy through data-driven algorithms reduces the manual workload of doctors to diagnose epilepsy. New algorithms are biased either towards signal processing or deep learning, which holds subjective advantages and disadvantages. The proposed pipeline is an end-to-end automated seizure prediction framework with a Fourier transform feature extraction and deep learning-based transformer model, a blend of signal processing and deep learning - this imbibes the potential features to automatically identify the attentive regions in EEG signals for effective screening. The proposed pipeline has demonstrated superior performance on the benchmark dataset with average sensitivity and false-positive rate per hour (FPR/h) as 98.46%, 94.83% and 0.12439, 0, respectively. The proposed work shows great results on the benchmark datasets and a big potential for clinics as a support system with medical experts monitoring the patients.
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Affiliation(s)
- Abhijeet Bhattacharya
- Electrical and Electronics Engineering, Bharati Vidyapeeth's College of Engineering, A-4 Block, Baba Ramdev Marg, Shiva Enclave, Paschim Vihar, New Delhi, 110063, India
| | - Tanmay Baweja
- Electrical and Electronics Engineering, Bharati Vidyapeeth's College of Engineering, A-4 Block, Baba Ramdev Marg, Shiva Enclave, Paschim Vihar, New Delhi, 110063, India
| | - S P K Karri
- Department of Electrical Engineering, National Institute of Technology, Andhra Pradesh, Tadepalligudem - 534101, India
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81
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Patel V, Tailor J, Ganatra A. Essentials of Predicting Epileptic Seizures Based on EEG Using Machine Learning: A Review. Open Biomed Eng J 2021. [DOI: 10.2174/1874120702115010090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Objective:
Epilepsy is one of the chronic diseases, which requires exceptional attention. The unpredictability of the seizures makes it worse for a person suffering from epilepsy.
Methods:
The challenge to predict seizures using modern machine learning algorithms and computing resources would be a boon to a person with epilepsy and its caregivers. Researchers have shown great interest in the task of epileptic seizure prediction for a few decades. However, the results obtained have not clinical applicability because of the high false-positive ratio. The lack of standard practices in the field of epileptic seizure prediction makes it challenging for novice ones to follow the research. The chances of reproducibility of the result are negligible due to the unavailability of implementation environment-related details, use of standard datasets, and evaluation parameters.
Results:
Work here presents the essential components required for the prediction of epileptic seizures, which includes the basics of epilepsy, its treatment, and the need for seizure prediction algorithms. It also gives a detailed comparative analysis of datasets used by different researchers, tools and technologies used, different machine learning algorithm considerations, and evaluation parameters.
Conclusion:
The main goal of this paper is to synthesize different methodologies for creating a broad view of the state-of-the-art in the field of seizure prediction.
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82
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Sahani M, Rout SK, Dash PK. FPGA implementation of epileptic seizure detection using semisupervised reduced deep convolutional neural network. Appl Soft Comput 2021. [DOI: 10.1016/j.asoc.2021.107639] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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83
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Gu X, Zhang C, Ni T. A Hierarchical Discriminative Sparse Representation Classifier for EEG Signal Detection. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2021; 18:1679-1687. [PMID: 32750882 DOI: 10.1109/tcbb.2020.3006699] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Classification of electroencephalogram (EEG) signal data plays a vital role in epilepsy detection. Recently sparse representation-based classification (SRC) methods have achieved the good performance in EEG signal automatic detection, by which the EEG signals are sparsely represented using a few active coefficients in the dictionary and classified according to the reconstruction criteria. However, most of SRC learn a linear dictionary for encoding, and cannot extract enough information and nonlinear relationship of data for classification. To solve this problem, a hierarchical discriminative sparse representation classification model (called HD-SRC) for EEG signal detection is proposed. Based on the framework of neural network, HD-SRC learns the hierarchical nonlinear transformation and maps the signal data into the nonlinear transformed space. Through incorporating this idea into label consistent K singular value decomposition (LC-KSVD) at the top layer of neural network, HD-SRC seeks discriminative representation together with dictionary, while minimizing errors of classification, reconstruction and discriminative sparse-code for pattern classification. By learning the hierarchical feature mapping and discriminative dictionary simultaneously, more discriminative information of data can be exploited. In the experiment the proposed model is evaluated on the Bonn EEG database, and the results show it obtains satisfactory classification performance in multiple EEG signal detection tasks.
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84
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Yang X, Zhao J, Sun Q, Lu J, Ma X. An Effective Dual Self-Attention Residual Network for Seizure Prediction. IEEE Trans Neural Syst Rehabil Eng 2021; 29:1604-1613. [PMID: 34370668 DOI: 10.1109/tnsre.2021.3103210] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
As one of the most challenging data analysis tasks in chronic brain diseases, epileptic seizure prediction has attracted extensive attention from many researchers. Seizure prediction, can greatly improve patients' quality of life in many ways, such as preventing accidents and reducing harm that may occur during epileptic seizures. This work aims to develop a general method for predicting seizures in specific patients through exploring the time-frequency correlation of features obtained from multi-channel EEG signals. We convert the original EEG signals into spectrograms that represent time-frequency characteristics by applying short-time Fourier transform (STFT) to the EEG signals. For the first time, we propose a dual self-attention residual network (RDANet) that combines a spectrum attention module integrating local features with global features, with a channel attention module mining the interdependence between channel mappings to achieve better forecasting performance. Our proposed approach achieved a sensitivity of 89.33%, a specificity of 93.02%, an AUC of 91.26% and an accuracy of 92.07% on 13 patients from the public CHB-MIT scalp EEG dataset. Our experiments show that different EEG signal prediction segment lengths are an important factor affecting prediction performance. Our proposed method is competitive and achieves good robustness without patient-specific engineering.
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85
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Abstract
The number of people diagnosed with epilepsy as a common brain disease accounts for about 1% of the world’s total population. Seizure prediction is an important study that can improve the lives of patients with epilepsy, and, in recent years, it has attracted more and more attention. In this paper, we propose a novel hybrid deep learning model that combines a Dense Convolutional Network (DenseNet) and Long Short-Term Memory (LSTM) for epileptic seizure prediction using EEG data. The proposed method first converts the EEG data into the time-frequency domain through Discrete Wavelet Transform (DWT) for use in the input of the model. Then, we train the previously transformed image through a hybrid model combining Densenet and LSTM. To evaluate the performance of the proposed method, experiments are conducted for each preictal length of 5, 10, and 15 min using the CHB-MIT scalp EEG dataset. As a result, we obtained a prediction accuracy of 93.28%, a sensitivity of 92.92%, a specificity of 93.65%, a false positive rate of 0.063 per hour, and an F1-score of 0.923 when the preictal length was 5 min. Finally, as the proposed method is compared to previous studies, it is confirmed that the seizure prediction performance was improved significantly.
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86
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Analysis of epileptic seizures based on EEG using recurrence plot images and deep learning. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102854] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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87
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Dissanayake T, Fernando T, Denman S, Sridharan S, Fookes C. Geometric Deep Learning for Subject-Independent Epileptic Seizure Prediction using Scalp EEG Signals. IEEE J Biomed Health Inform 2021; 26:527-538. [PMID: 34314363 DOI: 10.1109/jbhi.2021.3100297] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Recently, researchers in the biomedical community have introduced deep learning-based epileptic seizure prediction models using electroencephalograms (EEGs) that can anticipate an epileptic seizure by differentiating between the pre-ictal and interictal stages of the subjects brain. Despite having the appearance of a typical anomaly detection task, this problem is complicated by subject-specific characteristics in EEG data. Therefore, studies that investigate seizure prediction widely employ subject-specific models. However, this approach is not suitable in situations where a target subject has limited (or no) data for training. Subject-independent models can address this issue by learning to predict seizures from multiple subjects, and therefore are of greater value in practice. In this study, we propose a subject-independent seizure predictor using Geometric Deep Learning (GDL). In the first stage of our GDL-based method we use graphs derived from physical connections in the EEG grid. We subsequently seek to synthesize subject-specific graphs using deep learning. The models proposed in both stages achieve state-of-the-art performance using a one-hour early seizure prediction window on two benchmark datasets (CHB-MIT-EEG: 95.38% with 23 subjects and Siena-EEG: 96.05% with 15 subjects). To the best of our knowledge, this is the first study that proposes synthesizing subject-specific graphs for seizure prediction. Furthermore, through model interpretation we outline how this method can potentially contribute towards Scalp EEG-based seizure localization.
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88
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Zhao S, Yang J, Sawan M. Energy-Efficient Neural Network for Epileptic Seizure Prediction. IEEE Trans Biomed Eng 2021; 69:401-411. [PMID: 34242159 DOI: 10.1109/tbme.2021.3095848] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Seizure prediction for drug-refractory epilepsy patients can improve their quality of life, reduce their anxiety, and help them take the necessary precautions. Nowadays, numerous deep learning algorithms have been proposed to predict seizure onset and obtain better performance than traditional machine learning methods. However, these methods require a large set of parameters and large hardware resources; they also have high energy consumption. Therefore, these methods cannot be implemented on compact, low-power wearable, or implantable medical devices. The devices should operate on a real-time basis to continually inform the epileptic patients. In this paper, we describe energy-efficient and hardware-friendly methods to predict the epileptic seizures. A model of only 45 kB was obtained by the neural architecture search and was evaluated across three datasets. The overall accuracy, sensitivity, false prediction rate, and area under receiver operating characteristic curve were 99.53%, 99.81%, 0.005/h, 1 and 93.60%, 93.48%, 0.063/h, 0.977 and 86.86%, 85.19%, 0.116/h, 0.933, respectively, for the CHB-MIT scalp, the AES and Melbourne University intracranial electroencephalography (EEG) datasets. This model was further reduced with network pruning, quantization, and compact neural networks. The performances for the model sizes less than 50 kB for scalp EEG data and less than 10 kB for intracranial EEG data outperformed all the other models of similar model sizes. In particular, the energy consumption estimation was less than 10 mJ per inference for scalp EEG signal and less than 0.5 mJ per inference for intracranial EEG signal, which meet the requirements for low-power wearable and implantable devices, respectively.
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89
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Deep learning based efficient epileptic seizure prediction with EEG channel optimization. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102767] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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90
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Assali I, Jlassi I, Aissi M, Blaiech AG, Carrère M, Bedoui MH. Comparison by multivariate auto-regressive method of seizure prediction for real patients and virtual patients. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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91
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Sahani M, Rout SK, Dash PK. Epileptic Seizure Recognition Using Reduced Deep Convolutional Stack Autoencoder and Improved Kernel RVFLN From EEG Signals. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2021; 15:595-605. [PMID: 34156948 DOI: 10.1109/tbcas.2021.3090995] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
In this paper, reduced deep convolutional stack autoencoder (RDCSAE) and improved kernel random vector functional link network (IKRVFLN) are combined to recognize the epileptic seizure using both the multichannel scalp and single-channel electroencephalogram (EEG) signals. The novel RDCSAE structure is designed to extract the most discriminative unsupervised features from EEG signals and fed into the proposed supervised IKRVFLN classifier to train efficiently by reducing the mean-square error cost function for recognizing the epileptic seizure activity with promising accuracy. The proposed RDCSAE-IKRVFLN algorithm is tested over the benchmark Boston Children's Hospital multichannel scalp EEG (sEEG) and Boon University, Germany single-channel EEG databases. The less computational complexity, higher learning speed, better model generalization, accurate epileptic seizure recognition, remarkable classification accuracy, negligible false positive rate per hour (FPR/h) and short event recognition time are the main advantages of the proposed RDCSAE-IKRVFLN method over reduced deep convolutional neural network (RDCNN), RDCSAE and RDCSAE-KRVFLN methods. The proposed RDCSAE-IKRVFLN method is implemented in a high-speed reconfigurable field-programmable gate array (FPGA) hardware environment to design a computer-aided-diagnosis (CAD) system for automatic epileptic seizure diagnosis. The simplicity, feasibility, and practicability of the proposed method validate the stable and reliable performances of epilepsy detection and recognition.
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92
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Peng P, Xie L, Wei H. A Deep Fourier Neural Network for Seizure Prediction Using Convolutional Neural Network and Ratios of Spectral Power. Int J Neural Syst 2021; 31:2150022. [PMID: 33970057 DOI: 10.1142/s0129065721500222] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Epileptic seizure prediction is one of the most used therapeutic adjuvant strategies for drug-resistant epilepsy. Conventional methods usually adopt handcrafted features and manual parameter setting. The over-reliance on the expertise of specialists may lead to weak exploitation of features and low popularization of clinical application. This paper proposes a novel parameterless patient-specific method based on Fourier Neural Network (FNN), where the Fourier transform and backpropagation learning are synthesized to make the predictor more efficient and practical. The employment of FNN is the first attempt in the field of seizure prediction due to its automatic extraction of immanent spectra in epileptic signals. Despite the self-adaptive superiority of FNN, we introduce Convolutional Neural Network (CNN) to further improve its search capability in high-dimensional feature spaces. The study also develops a multi-layer module to estimate spectral power ratios of raw recordings, which optimizes the prediction by enhancing feature diversity. Based on these modules, this paper proposes a two-channel deep neural network: Fourier Ratio Convolutional Neural Network (FRCNN). To demonstrate the reliability of the model, we explain the mathematical meaning of hidden-layer neurons in FRCNN theoretically. This approach is evaluated on both intracranial and scalp EEG datasets. It shows that the predictor achieved a sensitivity of 91.2% and a false prediction rate (FPR) of 0.06[Formula: see text]h[Formula: see text] across intracranial subjects and a sensitivity of 85.4% and an FPR of 0.14[Formula: see text]h[Formula: see text] over scalp subjects. The results indicate that FRCNN enables the convenience of epilepsy treatments while preserving a high degree of precision. In the end, a detailed comparison with the previous methods demonstrates that FRCNN has achieved higher performance and generalization ability.
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Affiliation(s)
- Peizhen Peng
- Key Laboratory of Measurement and Control of CSE, Ministry of Education, School of Automation, Southeast University, Nanjing 210096, P. R. China
| | - Liping Xie
- Key Laboratory of Measurement and Control of CSE, Ministry of Education, School of Automation, Southeast University, Nanjing 210096, P. R. China
| | - Haikun Wei
- Key Laboratory of Measurement and Control of CSE, Ministry of Education, School of Automation, Southeast University, Nanjing 210096, P. R. China
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93
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Liu X, Richardson AG. Edge deep learning for neural implants: a case study of seizure detection and prediction. J Neural Eng 2021; 18. [PMID: 33794507 DOI: 10.1088/1741-2552/abf473] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Accepted: 04/01/2021] [Indexed: 11/12/2022]
Abstract
Objective.Implanted devices providing real-time neural activity classification and control are increasingly used to treat neurological disorders, such as epilepsy and Parkinson's disease. Classification performance is critical to identifying brain states appropriate for the therapeutic action (e.g. neural stimulation). However, advanced algorithms that have shown promise in offline studies, in particular deep learning (DL) methods, have not been deployed on resource-restrained neural implants. Here, we designed and optimized three DL models or edge deployment and evaluated their inference performance in a case study of seizure detection.Approach.A deep neural network (DNN), a convolutional neural network (CNN), and a long short-term memory (LSTM) network were designed and trained with TensorFlow to classify ictal, preictal, and interictal phases from the CHB-MIT scalp EEG database. A sliding window based weighted majority voting algorithm was developed to detect seizure events based on each DL model's classification results. After iterative model compression and coefficient quantization, the algorithms were deployed on a general-purpose, off-the-shelf microcontroller for real-time testing. Inference sensitivity, false positive rate (FPR), execution time, memory size, and power consumption were quantified.Main results.For seizure event detection, the sensitivity and FPR for the DNN, CNN, and LSTM models were 87.36%/0.169 h-1, 96.70%/0.102 h-1, and 97.61%/0.071 h-1, respectively. Predicting seizures for early warnings was also feasible. The LSTM model achieved the best overall performance at the expense of the highest power. The DNN model achieved the shortest execution time. The CNN model showed advantages in balanced performance and power with minimum memory requirement. The implemented model compression and quantization achieved a significant saving of power and memory with an accuracy degradation of less than 0.5%.Significance.Inference with embedded DL models achieved performance comparable to many prior implementations that had no time or computational resource limitations. Generic microcontrollers can provide the required memory and computational resources, while model designs can be migrated to application-specific integrated circuits for further optimization and power saving. The results suggest that edge DL inference is a feasible option for future neural implants to improve classification performance and therapeutic outcomes.
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Affiliation(s)
- Xilin Liu
- Department of Electrical and Systems Engineering, University of Pennsylvania, Philadelphia, PA, United States of America
| | - Andrew G Richardson
- Department of Neurosurgery, University of Pennsylvania, Philadelphia, PA, United States of America
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94
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Diagnosis and prognosis of mental disorders by means of EEG and deep learning: a systematic mapping study. Artif Intell Rev 2021. [DOI: 10.1007/s10462-021-09986-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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95
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Pinto MF, Leal A, Lopes F, Dourado A, Martins P, Teixeira CA. A personalized and evolutionary algorithm for interpretable EEG epilepsy seizure prediction. Sci Rep 2021; 11:3415. [PMID: 33564050 PMCID: PMC7873127 DOI: 10.1038/s41598-021-82828-7] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Accepted: 01/06/2021] [Indexed: 11/08/2022] Open
Abstract
Seizure prediction may improve the quality of life of patients suffering from drug-resistant epilepsy, which accounts for about 30% of the total epileptic patients. The pre-ictal period determination, characterized by a transitional stage between normal brain activity and seizure, is a critical step. Past approaches failed to attain real-world applicability due to lack of generalization capacity. More recently, deep learning techniques may outperform traditional classifiers and handle time dependencies. However, despite the existing efforts for providing interpretable insights, clinicians may not be willing to make high-stake decisions based on them. Furthermore, a disadvantageous aspect of the more usual seizure prediction pipeline is its modularity and significant independence between stages. An alternative could be the construction of a search algorithm that, while considering pipeline stages' synergy, fine-tunes the selection of a reduced set of features that are widely used in the literature and computationally efficient. With extracranial recordings from 19 patients suffering from temporal-lobe seizures, we developed a patient-specific evolutionary optimization strategy, aiming to generate the optimal set of features for seizure prediction with a logistic regression classifier, which was tested prospectively in a total of 49 seizures and 710 h of continuous recording and performed above chance for 32% of patients, using a surrogate predictor. These results demonstrate the hypothesis of pre-ictal period identification without the loss of interpretability, which may help understanding brain dynamics leading to seizures and improve prediction algorithms.
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Affiliation(s)
- Mauro F Pinto
- Univ Coimbra, Centre for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, Coimbra, Portugal.
| | - Adriana Leal
- Univ Coimbra, Centre for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, Coimbra, Portugal
| | - Fábio Lopes
- Univ Coimbra, Centre for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, Coimbra, Portugal
| | - António Dourado
- Univ Coimbra, Centre for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, Coimbra, Portugal
| | - Pedro Martins
- Univ Coimbra, Centre for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, Coimbra, Portugal
| | - César A Teixeira
- Univ Coimbra, Centre for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, Coimbra, Portugal
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96
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Epilepsy prediction through optimized multidimensional sample entropy and Bi-LSTM. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2020.102293] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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97
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Craley J, Johnson E, Jouny C, Venkataraman A. Automated inter-patient seizure detection using multichannel Convolutional and Recurrent Neural Networks. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2020.102360] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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98
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Rasheed K, Qayyum A, Qadir J, Sivathamboo S, Kwan P, Kuhlmann L, O'Brien T, Razi A. Machine Learning for Predicting Epileptic Seizures Using EEG Signals: A Review. IEEE Rev Biomed Eng 2021; 14:139-155. [PMID: 32746369 DOI: 10.1109/rbme.2020.3008792] [Citation(s) in RCA: 104] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
With the advancement in artificial intelligence (AI) and machine learning (ML) techniques, researchers are striving towards employing these techniques for advancing clinical practice. One of the key objectives in healthcare is the early detection and prediction of disease to timely provide preventive interventions. This is especially the case for epilepsy, which is characterized by recurrent and unpredictable seizures. Patients can be relieved from the adverse consequences of epileptic seizures if it could somehow be predicted in advance. Despite decades of research, seizure prediction remains an unsolved problem. This is likely to remain at least partly because of the inadequate amount of data to resolve the problem. There have been exciting new developments in ML-based algorithms that have the potential to deliver a paradigm shift in the early and accurate prediction of epileptic seizures. Here we provide a comprehensive review of state-of-the-art ML techniques in early prediction of seizures using EEG signals. We will identify the gaps, challenges, and pitfalls in the current research and recommend future directions.
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99
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Nogay HS, Adeli H. Detection of Epileptic Seizure Using Pretrained Deep Convolutional Neural Network and Transfer Learning. Eur Neurol 2021; 83:602-614. [PMID: 33423031 DOI: 10.1159/000512985] [Citation(s) in RCA: 83] [Impact Index Per Article: 20.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Accepted: 11/11/2020] [Indexed: 11/19/2022]
Abstract
INTRODUCTION The diagnosis of epilepsy takes a certain process, depending entirely on the attending physician. However, the human factor may cause erroneous diagnosis in the analysis of the EEG signal. In the past 2 decades, many advanced signal processing and machine learning methods have been developed for the detection of epileptic seizures. However, many of these methods require large data sets and complex operations. METHODS In this study, an end-to-end machine learning model is presented for detection of epileptic seizure using the pretrained deep two-dimensional convolutional neural network (CNN) and the concept of transfer learning. The EEG signal is converted directly into visual data with a spectrogram and used directly as input data. RESULTS The authors analyzed the results of the training of the proposed pretrained AlexNet CNN model. Both binary and ternary classifications were performed without any extra procedure such as feature extraction. By performing data set creation from short-term spectrogram graphic images, the authors were able to achieve 100% accuracy for binary classification for epileptic seizure detection and 100% for ternary classification. DISCUSSION/CONCLUSION The proposed automatic identification and classification model can help in the early diagnosis of epilepsy, thus providing the opportunity for effective early treatment.
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Affiliation(s)
- Hidir Selcuk Nogay
- Department of Electrical and Energy, Kayseri University, Kayseri, Turkey
| | - Hojjat Adeli
- Departments of Biomedical Informatics and Neuroscience, The Ohio State University, Columbus, Ohio, USA,
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100
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Qi Y, Ding L, Wang Y, Pan G. Learning Robust Features from Nonstationary Brain Signals by Multi-Scale Domain Adaptation Networks for Seizure Prediction. IEEE Trans Cogn Dev Syst 2021. [DOI: 10.1109/tcds.2021.3100270] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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