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Papadogiorgaki M, Mezaris V, Chatzizisis YS, Giannoglou GD, Kompatsiaris I. Texture Analysis and Radial Basis Function Approximation for IVUS Image Segmentation. Open Biomed Eng J 2007; 1:53-9. [PMID: 19662128 PMCID: PMC2701076 DOI: 10.2174/1874120700701010053] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2007] [Revised: 09/07/2007] [Accepted: 09/07/2007] [Indexed: 11/22/2022] Open
Abstract
>Intravascular ultrasound (IVUS) has become in the last years an important tool in both clinical and research applications. The detection of lumen and media-adventitia borders in IVUS images represents a first necessary step in the utilization of the IVUS data for the 3D reconstruction of human coronary arteries and the reliable quantitative assessment of the atherosclerotic lesions. To serve this goal, a fully automated technique for the detection of lumen and media-adventitia boundaries has been developed. This comprises two different steps for contour initialization, one for each corresponding contour of interest, based on the results of texture analysis, and a procedure for approximating the initialization results with smooth continuous curves. A multilevel Discrete Wavelet Frames decomposition is used for texture analysis, whereas Radial Basis Function approximation is employed for producing smooth contours. The proposed method shows promising results compared to a previous approach for texture-based IVUS image analysis.
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Affiliation(s)
- Maria Papadogiorgaki
- Informatics and Telematics Institute, Centre for Research and Technology Hellas, 1st Km Thermi-Panorama Rd, P.O. Box 60361, GR-57001 Thermi-Thessaloniki, Greece
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52
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Giannoglou GD, Chatzizisis YS, Koutkias V, Kompatsiaris I, Papadogiorgaki M, Mezaris V, Parissi E, Diamantopoulos P, Strintzis MG, Maglaveras N, Parcharidis GE, Louridas GE. A novel active contour model for fully automated segmentation of intravascular ultrasound images: In vivo validation in human coronary arteries. Comput Biol Med 2007; 37:1292-302. [PMID: 17291482 DOI: 10.1016/j.compbiomed.2006.12.003] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2005] [Revised: 11/28/2006] [Accepted: 12/04/2006] [Indexed: 10/23/2022]
Abstract
The detection of lumen and media-adventitia borders in intravascular ultrasound (IVUS) images constitutes a necessary step for the quantitative assessment of atherosclerotic lesions. To date, most of the segmentation methods reported are either manual, or semi-automated, requiring user interaction at some extent, which increases the analysis time and detection errors. In this work, a fully automated approach for lumen and media-adventitia border detection is presented based on an active contour model, the initialization of which is performed via an analysis mechanism that takes advantage of the inherent morphologic characteristics of IVUS images. The in vivo validation of the proposed model in human coronary arteries revealed that it is a feasible approach, enabling accurate and rapid segmentation of multiple IVUS images.
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Affiliation(s)
- George D Giannoglou
- Cardiovascular Engineering and Atherosclerosis Laboratory, 1st Cardiology Department, AHEPA University Hospital, Aristotle University Medical School, Thessaloniki, Greece.
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53
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Dos Santos E, Yoshizawa M, Tanaka A, Saijo Y, Iwamoto T. Detection of luminal contour using fuzzy clustering and mathematical morphology in intravascular ultrasound images. CONFERENCE PROCEEDINGS : ... ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL CONFERENCE 2007; 2005:3471-4. [PMID: 17280971 DOI: 10.1109/iembs.2005.1617226] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
An innovative application of fuzzy clustering and mathematical morphology for the problem of luminal contour detection in intravascular ultrasound images is presented. Median and standard deviation are used as features for segmentation process. Comparison was made with gold standard segmented images obtained from the average of images segmented by experienced medical doctors. Tests were carried out with 20 in vivo coronary images obtained from different patients. High correlation coefficients were found between lumen regions manually and automatically defined when area, mean gray level, and standard deviation of the lumen regions were compared.
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Affiliation(s)
- Esmeraldo Dos Santos
- Graduate School of Engineering, Tohoku University, Aoba 6-6-05, Aoba-ku, Sendai 980-8579, Japan
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54
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Wu CH, Sun YN. Segmentation of kidney from ultrasound B-mode images with texture-based classification. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2006; 84:114-23. [PMID: 17070959 DOI: 10.1016/j.cmpb.2006.09.009] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2006] [Revised: 09/18/2006] [Accepted: 09/18/2006] [Indexed: 05/12/2023]
Abstract
The segmentation of anatomical structures from sonograms can help physicians evaluate organ morphology and realize quantitative measurement. It is an important but difficult issue in medical image analysis. In this paper, we propose a new method based on Laws' microtexture energies and maximum a posteriori (MAP) estimation to construct a probabilistic deformable model for kidney segmentation. First, using texture image features and MAP estimation, we classify each image pixel as inside or outside the boundary. Then, we design a deformable model to locate the actual boundary and maintain the smooth nature of the organ. Using gradient information subject to a smoothness constraint, the optimal contour is obtained by the dynamic programming technique. Experiments on different datasets are described. We find this method to be an effective approach.
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Affiliation(s)
- Chia-Hsiang Wu
- Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 701, Taiwan, ROC
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55
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Noble JA, Boukerroui D. Ultrasound image segmentation: a survey. IEEE TRANSACTIONS ON MEDICAL IMAGING 2006; 25:987-1010. [PMID: 16894993 DOI: 10.1109/tmi.2006.877092] [Citation(s) in RCA: 463] [Impact Index Per Article: 24.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
This paper reviews ultrasound segmentation paper methods, in a broad sense, focusing on techniques developed for medical B-mode ultrasound images. First, we present a review of articles by clinical application to highlight the approaches that have been investigated and degree of validation that has been done in different clinical domains. Then, we present a classification of methodology in terms of use of prior information. We conclude by selecting ten papers which have presented original ideas that have demonstrated particular clinical usefulness or potential specific to the ultrasound segmentation problem.
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Affiliation(s)
- J Alison Noble
- Department of Engineering Science, University of Oxford, UK.
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56
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Gil D, Hernández A, Rodriguez O, Mauri J, Radeva P. Statistical strategy for anisotropic adventitia modelling in IVUS. IEEE TRANSACTIONS ON MEDICAL IMAGING 2006; 25:768-78. [PMID: 16768241 DOI: 10.1109/tmi.2006.874962] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Vessel plaque assessment by analysis of intravascular ultrasound sequences is a useful tool for cardiac disease diagnosis and intervention. Manual detection of luminal (inner) and media-adventitia (external) vessel borders is the main activity of physicians in the process of lumen narrowing (plaque) quantification. Difficult definition of vessel border descriptors, as well as, shades, artifacts, and blurred signal response due to ultrasound physical properties trouble automated adventitia segmentation. In order to efficiently approach such a complex problem, we propose blending advanced anisotropic filtering operators and statistical classification techniques into a vessel border modelling strategy. Our systematic statistical analysis shows that the reported adventitia detection achieves an accuracy in the range of interobserver variability regardless of plaque nature, vessel geometry, and incomplete vessel borders.
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Affiliation(s)
- Debora Gil
- Computer Science Department, Computer Vision Center, Universidad Autonoma de Barcelona, Spain.
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57
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Cardinal MHR, Meunier J, Soulez G, Maurice RL, Therasse E, Cloutier G. Intravascular ultrasound image segmentation: a three-dimensional fast-marching method based on gray level distributions. IEEE TRANSACTIONS ON MEDICAL IMAGING 2006; 25:590-601. [PMID: 16689263 DOI: 10.1109/tmi.2006.872142] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Intravascular ultrasound (IVUS) is a catheter based medical imaging technique particularly useful for studying atherosclerotic disease. It produces cross-sectional images of blood vessels that provide quantitative assessment of the vascular wall, information about the nature of atherosclerotic lesions as well as plaque shape and size. Automatic processing of large IVUS data sets represents an important challenge due to ultrasound speckle, catheter artifacts or calcification shadows. A new three-dimensional (3-D) IVUS segmentation model, that is based on the fast-marching method and uses gray level probability density functions (PDFs) of the vessel wall structures, was developed. The gray level distribution of the whole IVUS pullback was modeled with a mixture of Rayleigh PDFs. With multiple interface fast-marching segmentation, the lumen, intima plus plaque structure, and media layers of the vessel wall were computed simultaneously. The PDF-based fast-marching was applied to 9 in vivo IVUS pullbacks of superficial femoral arteries and to a simulated IVUS pullback. Accurate results were obtained on simulated data with average point to point distances between detected vessel wall borders and ground truth <0.072 mm. On in vivo IVUS, a good overall performance was obtained with average distance between segmentation results and manually traced contours <0.16 mm. Moreover, the worst point to point variation between detected and manually traced contours stayed low with Hausdorff distances <0.40 mm, indicating a good performance in regions lacking information or containing artifacts. In conclusion, segmentation results demonstrated the potential of gray level PDF and fast-marching methods in 3-D IVUS image processing.
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Affiliation(s)
- Marie-Hélène Roy Cardinal
- Laboratory of Biorheology and Medical Ultrasonics, University of Montreal Hospital's Research Center, 2099 Alexandre de Sève, Montreal, QC H2L 2W5, Canada.
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58
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Wahle A, Lopez JJ, Olszewski ME, Vigmostad SC, Chandran KB, Rossen JD, Sonka M. Plaque development, vessel curvature, and wall shear stress in coronary arteries assessed by X-ray angiography and intravascular ultrasound. Med Image Anal 2006; 10:615-31. [PMID: 16644262 PMCID: PMC2590653 DOI: 10.1016/j.media.2006.03.002] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2006] [Indexed: 11/22/2022]
Abstract
The relationships among vascular geometry, hemodynamics, and plaque development in the coronary arteries are complex and not yet well understood. This paper reports a methodology for the quantitative analysis of in vivo coronary morphology and hemodynamics, with particular emphasis placed on the critical issues of image segmentation and the automated classification of disease severity. We were motivated by the observation that plaque more often developed at the inner curvature of a vessel, presumably due to the relatively lower wall shear stress at these locations. The presented studies are based on our validated methodology for the three-dimensional fusion of intravascular ultrasound (IVUS) and X-ray angiography, introducing a novel approach for IVUS segmentation that incorporates a robust, knowledge-based cost function and a fully optimal, three-dimensional segmentation algorithm. Our first study shows that circumferential plaque distribution depends on local vessel curvature in the majority of vessels. The second study analyzes the correlation between plaque distribution and wall shear stress in a set of 48 in vivo vessel segments. The results were conclusive for both studies, with a stronger correlation of circumferential plaque thickness with local curvature than with wall shear stress. The inverse relationship between local wall shear stress and plaque thickness was significantly more pronounced (p<0.025) in vessel cross sections exhibiting compensatory enlargement (positive remodeling) without luminal narrowing than when the full spectrum of disease severity was considered. The inverse relationship was no longer observed in vessels where less than 35% of vessel cross sections remained without luminal narrowing. The findings of this study confirm, in vivo, the hypothesis that relatively lower wall shear stress is associated with early plaque development.
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Affiliation(s)
- Andreas Wahle
- Department of Electrical and Computer Engineering, The University of Iowa, 4016 Seamans Center, Iowa City, IA 52242, USA.
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59
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Loizou CP, Pattichis CS, Pantziaris M, Tyllis T, Nicolaides A. Quality evaluation of ultrasound imaging in the carotid artery based on normalization and speckle reduction filtering. Med Biol Eng Comput 2006; 44:414-26. [PMID: 16937183 DOI: 10.1007/s11517-006-0045-1] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2005] [Accepted: 03/16/2006] [Indexed: 10/24/2022]
Abstract
Image quality is important when evaluating ultrasound images of the carotid for the assessment of the degree of atherosclerotic disease, or when transferring images through a telemedicine channel, and/or in other image processing tasks. The objective of this study was to investigate the usefulness of image quality evaluation based on image quality metrics and visual perception, in ultrasound imaging of the carotid artery after normalization and speckle reduction filtering. Image quality was evaluated based on statistical and texture features, image quality evaluation metrics, and visual perception evaluation made by two experts. These were computed on 80 longitudinal ultrasound images of the carotid bifurcation recorded from two different ultrasound scanners, the HDI ATL-3000 and the HDI ATL-5000 scanner, before (NF) and after (DS) speckle reduction filtering, after normalization (N), and after normalization and speckle reduction filtering (NDS). The results of this study showed that: (1) the normalized speckle reduction, NDS, images were rated visually better on both scanners; (2) the NDS images showed better statistical and texture analysis results on both scanners; (3) better image quality evaluation results were obtained between the original (NF) and normalized (N) images, i.e. NF-N, for both scanners, followed by the NF-DS images for the ATL HDI-5000 scanner and the NF-DS on the HDI ATL-3000 scanner; (4) the ATL HDI-5000 scanner images have considerable higher entropy than the ATL HDI-3000 scanner and thus more information content. However, based on the visual evaluation by the two experts, both scanners were rated similarly. The above findings are also in agreement with the visual perception evaluation, carried out by the two vascular experts. The results of this study showed that ultrasound image normalization and speckle reduction filtering are important preprocessing steps favoring image quality, and should be further investigated.
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Affiliation(s)
- C P Loizou
- Department of Computer Science, Intercollege, 92 Ayias Phylaxeos Str., PO Box 51604, 3507 Limassol, Cyprus.
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60
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Zhu Y, Williams S, Zwiggelaar R. Computer technology in detection and staging of prostate carcinoma: A review. Med Image Anal 2006; 10:178-99. [PMID: 16150630 DOI: 10.1016/j.media.2005.06.003] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2004] [Revised: 02/02/2005] [Accepted: 06/22/2005] [Indexed: 11/20/2022]
Abstract
After two decades of increasing interest and research activity, computer-assisted diagnostic approaches are reaching the stage where more routine deployment in clinical practice is becoming a possibility [Kruppinski, E.A., 2004. Computer-aided detection in clinical environment: Benefits and challenges for radiologists. Radiology 231, 7-9]. This is particularly the case in the analysis of mammographic images [Helvie, M.A., Hadjiiski, L., Makariou, E., Chan, H.P., Petrick, N., Sahiner, B., Lo, S.C., Freedman, M., Adler, D., Bailey, J., Blane, C., Hoff, D., Hunt, K., Joynt, L., Klein, K., Paramagul, C., Patterson, S.K., Roubidoux, M.A., 2004. Sensitivity of noncommercial computer-aided detection system for mammographic breast cancer detection: pilot clinical trial. Radiology 231, 208-214] and in the detection of pulmonary nodules [Reeves, A.P., Kostis, W.J., 2000. Computer-aided diagnosis for lung cancer. Radiol. Clin. North Am. 38, 497-509]. However, similar approaches can be applied more widely with the promise of increasing clinical utility in other areas. We review how computer-aided approaches may be applied in the diagnosis and staging of prostatic cancer. The current status of computer technology is reviewed, covering artificial neural networks for detection and staging, computerised biopsy simulation and computer-assisted analysis of ultrasound and magnetic resonance images.
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Affiliation(s)
- Yanong Zhu
- School of Computing Sciences, University of East Anglia, Norwich, Norfolk NR4 7TJ, UK
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61
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Liu W, Zagzebski JA, Varghese T, Dyer CR, Techavipoo U, Hall TJ. Segmentation of elastographic images using a coarse-to-fine active contour model. ULTRASOUND IN MEDICINE & BIOLOGY 2006; 32:397-408. [PMID: 16530098 PMCID: PMC1764611 DOI: 10.1016/j.ultrasmedbio.2005.11.011] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2005] [Revised: 11/07/2005] [Accepted: 11/17/2005] [Indexed: 05/04/2023]
Abstract
Delineation of radiofrequency-ablation-induced coagulation (thermal lesion) boundaries is an important clinical problem that is not well addressed by conventional imaging modalities. Elastography, which produces images of the local strain after small, externally applied compressions, can be used for visualization of thermal coagulations. This paper presents an automated segmentation approach for thermal coagulations on 3-D elastographic data to obtain both area and volume information rapidly. The approach consists of a coarse-to-fine method for active contour initialization and a gradient vector flow, active contour model for deformable contour optimization with the help of prior knowledge of the geometry of general thermal coagulations. The performance of the algorithm has been shown to be comparable to manual delineation of coagulations on elastograms by medical physicists (r = 0.99 for volumes of 36 radiofrequency-induced coagulations). Furthermore, the automatic algorithm applied to elastograms yielded results that agreed with manual delineation of coagulations on pathology images (r = 0.96 for the same 36 lesions). This algorithm has also been successfully applied on in vivo elastograms.
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Affiliation(s)
- Wu Liu
- Department of Medical Physics, University of Wisconsin-Madison, Madison, WI 53706-1532, USA.
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62
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Qiu Q, Dunmore-Buyze J, Boughner DR, Lacefield JC. Evaluation of an algorithm for semiautomated segmentation of thin tissue layers in high-frequency ultrasound images. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2006; 53:324-34. [PMID: 16529107 DOI: 10.1109/tuffc.2006.1593371] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
An algorithm consisting of speckle reduction by median filtering, contrast enhancement using top- and bottom-hat morphological filters, and segmentation with a discrete dynamic contour (DDC) model was implemented for nondestructive measurements of soft tissue layer thickness. Algorithm performance was evaluated by segmenting simulated images of three-layer phantoms and high-frequency (40 MHz) ultrasound images of porcine aortic valve cusps in vitro. The simulations demonstrated the necessity of the median and morphological filtering steps and enabled testing of user-specified parameters of the morphological filters and DDC model. In the experiments, six cusps were imaged in coronary perfusion solution (CPS) then in distilled water to test the algorithm's sensitivity to changes in the dimensions of thin tissue layers. Significant increases in the thickness of the fibrosa, spongiosa, and ventricularis layers, by 53.5% (p < 0.001), 88.5% (p < 0.001), and 35.1% (p = 0.033), respectively, were observed when the specimens were submerged in water. The intraobserver coefficient of variation of repeated thickness estimates ranged from 0.044 for the fibrosa in water to 0.164 for the spongiosa in CPS. Segmentation accuracy and variability depended on the thickness and contrast of the layers, but the modest variability provides confidence in the thickness measurements.
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Affiliation(s)
- Qiang Qiu
- University of Western Ontario, London, Ontario, N6A 5B9, Canada
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63
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Moment-based texture segmentation of luminal contour in intravascular ultrasound images. J Med Ultrason (2001) 2005; 32:91-9. [DOI: 10.1007/s10396-005-0041-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2004] [Accepted: 04/04/2005] [Indexed: 10/25/2022]
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