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Wang R, Dashwood WM, Nian H, Löhr CV, Fischer KA, Tsuchiya N, Nakagama H, Ashktorab H, Dashwood RH. NADPH oxidase overexpression in human colon cancers and rat colon tumors induced by 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP). Int J Cancer 2011; 128:2581-90. [PMID: 20715105 PMCID: PMC3262595 DOI: 10.1002/ijc.25610] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2010] [Accepted: 07/27/2010] [Indexed: 11/07/2022]
Abstract
NADPH oxidase/dual-oxidase (Nox/Duox) family members have been implicated in nuclear factor kappa-B (NFκB)-mediated inflammation and inflammation-associated pathologies. We sought to examine, for the first time, the role of Nox/Duox and NFκB in rats treated with the cooked meat heterocyclic amine carcinogen 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP). In the PhIP-induced colon tumors obtained after 1 year, Nox1, Nox4, NFκB-p50 and NFκB-p65 were all highly overexpressed compared with their levels in adjacent normal-looking colonic mucosa. Nox1 and Nox4 mRNA and protein levels also were markedly elevated in a panel of primary human colon cancers, compared with their matched controls. In HT29 human colon cancer cells, Nox1 knockdown induced G1 cell cycle arrest, whereas in Caco-2 cells there was a strong apoptotic response, with increased levels of cleaved caspase-3, -6, -7 and poly(ADP-ribose)polymerase. Nox1 knockdown blocked lipopolysaccharide-induced phosphorylation of IκB kinase, inhibited the nuclear translocation of NFκB (p50 and p65) proteins, and attenuated NFκB DNA binding activity. There was a corresponding reduction in the expression of downstream NFκB targets, such as MYC, CCND1 and IL1β. The results provide the first evidence for a role of Nox1, Nox4 and NFκB in PhIP-induced colon carcinogenesis, including during the early stages before tumor onset. Collectively, the findings from this investigation and others suggest that further work is warranted on the role of Nox/Duox family members and NFκB in colon cancer development.
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Affiliation(s)
- Rong Wang
- Linus Pauling Institute, Oregon State University, Corvallis, Oregon
| | | | - Hui Nian
- Linus Pauling Institute, Oregon State University, Corvallis, Oregon
- Department of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon
| | - Christiane V. Löhr
- College of Veterinary Medicine, Oregon State University, Corvallis, Oregon
| | - Kay A. Fischer
- College of Veterinary Medicine, Oregon State University, Corvallis, Oregon
| | - Naoto Tsuchiya
- Biochemistry Division, National Cancer Center Research Institute, Tokyo, Japan
| | - Hitoshi Nakagama
- Biochemistry Division, National Cancer Center Research Institute, Tokyo, Japan
| | | | - Roderick H. Dashwood
- Linus Pauling Institute, Oregon State University, Corvallis, Oregon
- Department of Environmental and Molecular Toxicology, Oregon State University, Corvallis, Oregon
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52
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Pimentel E, Cruces MP, Zimmering S. A study of the inhibition/promotion effects of sodium-copper chlorophyllin (SCC)-mediated mutagenesis in somatic cells of Drosophila. Mutat Res 2011; 722:52-5. [PMID: 21406245 DOI: 10.1016/j.mrgentox.2011.03.001] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2010] [Accepted: 03/07/2011] [Indexed: 11/28/2022]
Abstract
Sodium-copper chlorophyllin (SCC), a copper-porphyrin complex, has been shown to act as an inhibitor as well as a promoter of DNA-damage induction by a variety of mutagens in several test systems. In order to investigate the basis of this dual effect, experiments were carried out to compare the influence of pretreatment with intact SCC and that of its constituents, the metal-free protoporphyrin (PP-IX) and copper as CuCl(2). The wing-spot test was employed to monitor mutational events in somatic cells of Drosophila melanogaster. Heterozygous mwh+/+flr(3) larvae were treated for 24h with SCC, PP-IX, CuCl(2) or sucrose. Following this treatment, one group of larvae were immediately allowed to feed on instant medium containing 0.5mM N-nitroso-N-ethylurea (ENU) dissolved in phosphate buffer to reach pH 6. The remaining larvae received treatment with ENU with a delay of 1, 2 or 3days (DTD). Results revealed an (a) overall inhibitory effect for 0-DTD and 1-DTD after pretreatment with SCC, (b) only in 0-DTD after PP-IX, and (c) in all DTDs after treatment with CuCl(2). These results provide evidence that the copper ion plays a central role in the antimutagenic effect of SCC, and for a sustained period of time. Pretreatment with SCC and PP-IX produced a promoter effect at 2-DTD and 3-DTD. The results could be explained as an effect of the accumulation of metal-free porphyrin following the dissociation of the copper-porphyrin complex (SCC), the copper-ion reaching proteins to form complexes and participated in anabolic pathways.
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Affiliation(s)
- E Pimentel
- Departamento de Biología, Instituto Nacional de Investigaciones Nucleares (ININ), Carretera México-Toluca S/N, La Marquesa, Ocoyoacac, México CP. 52750, Mexico.
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53
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Wang H, Koshizaki N, Li L, Jia L, Kawaguchi K, Li X, Pyatenko A, Swiatkowska-Warkocka Z, Bando Y, Golberg D. Size-tailored ZnO submicrometer spheres: bottom-up construction, size-related optical extinction, and selective aniline trapping. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2011; 23:1865-1870. [PMID: 21413086 DOI: 10.1002/adma.201100078] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2011] [Indexed: 05/27/2023]
Affiliation(s)
- Hongqiang Wang
- Nanosystem Research Institute (NRI), National Institute of Advanced Industrial Science and Technology (AIST), Central 5, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan.
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54
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Grotto D, Vicentini J, Angeli JPF, Latorraca EF, Monteiro PAP, Barcelos GRM, Somacal S, Emanuelli T, Barbosa F. Evaluation of protective effects of fish oil against oxidative damage in rats exposed to methylmercury. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2011; 74:487-493. [PMID: 20970192 DOI: 10.1016/j.ecoenv.2010.10.012] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2010] [Revised: 09/23/2010] [Accepted: 10/02/2010] [Indexed: 05/30/2023]
Abstract
The present study evaluates a possible protective effect of fish oil against oxidative damage promoted by methylmercury (MeHg) in sub-chronically exposed rats. Reduced glutathione peroxidase and catalase enzyme activity and reduced glutathione levels were observed in MeHg-exposed animals compared to controls. Methylmercury exposure was also associated with DNA damage. Administration of fish oil to the methylmercury-exposed animals did not ameliorate enzyme activity or glutathione levels. On the other hand, a significant DNA protective effect (about 30%) was observed with fish oil treatment. There were no differences in the total mercury concentration in rat liver, kidney, heart or brain after MeHg administration with or without fish oil co-administration. Histopathological analyses showed a significant leukocyte infiltration in rat tissues after MeHg exposure, but this effect was significantly reduced after co-administration of fish oil. Taken together, our findings demonstrate oxidative damage even after low-level MeHg exposure and the protective effect of fish oil. This protection seems not to be related to antioxidant defenses or mercury re-distribution in rat tissues. It is probably due to the anti-inflammatory effects of fish oil.
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Affiliation(s)
- Denise Grotto
- Departamento de Análises Clínicas, Toxicológicas e Bromatológicas. Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, CEP.: 14040-903, Ribeirão Preto, São Paulo, Brazil
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55
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Piskac-Collier AL, Monroy C, Lopez MS, Cortes A, Etzel CJ, Greisinger AJ, Spitz MR, El-Zein RA. Variants in folate pathway genes as modulators of genetic instability and lung cancer risk. Genes Chromosomes Cancer 2011; 50:1-12. [PMID: 20842733 DOI: 10.1002/gcc.20826] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Genetic instability plays a crucial role in cancer development. The genetic stability of the cell as well as DNA methylation status could be modulated by folate levels. Several studies suggested associations between polymorphisms in folate genes and alterations in protein expression and variations in serum levels of the folate. The objective of this study was to investigate the effect of folate pathway polymorphisms on modulating genetic instability and lung cancer risk. Genotyping of 5 SNPs in folate pathway genes and cytokinesis-blocked micronucleus cytome assay analysis (to determine the genetic instability at baseline and following NNK treatment) was conducted on 180 lung cancer cases and 180 age-, gender-, and smoking-matched controls. Our results showed that individually, folate pathway SNPs were not associated with cytogenetic damage or lung cancer risk. However, in a polygenic disease such as lung cancer, gene-gene interactions are expected to play an important role in determining the phenotypic variability of the diseases. We observed that interactions between MTHFR677, MTHFR1298, and SHMT polymorphisms may have a significant impact on genetic instability in lung cancer patients. With regard to cytogenetic alterations, our results showed that lymphocytes from lung cancer patients exposed to the tobacco-specific carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone [NNK] had considerably increased frequency of cytogenetic damage in presence of MTHFR 677, MTHFR 1298, and SHMT allelic variants. These findings support the notion that significant interactions may potentially modulate the lung cancer susceptibility and alter the overall the repair abilities of lung cancer patients when exposed to tobacco carcinogens such as NNK.
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Affiliation(s)
- Amanda L Piskac-Collier
- Division of Cancer Prevention, Department of Epidemiology, The University of Texas M.D. Anderson Cancer Center, Houston, TX 77030, USA
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Yan C, Lu J, Zhang G, Gan T, Zeng Q, Shao Z, Duerksen-Hughes PJ, Yang J. Benzo[a]pyrene induces complex H2AX phosphorylation patterns by multiple kinases including ATM, ATR, and DNA-PK. Toxicol In Vitro 2011; 25:91-9. [DOI: 10.1016/j.tiv.2010.09.012] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2009] [Revised: 09/03/2010] [Accepted: 09/24/2010] [Indexed: 10/19/2022]
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57
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Fenech M. Current Knowledge and Strategies to Determine Dietary Reference Values for DNA Damage Prevention. Genes Environ 2011. [DOI: 10.3123/jemsge.33.112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
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58
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Diaz GJ, Murcia HW, Cepeda SM. Cytochrome P450 enzymes involved in the metabolism of aflatoxin B1 in chickens and quail. Poult Sci 2010; 89:2461-9. [PMID: 20952710 DOI: 10.3382/ps.2010-00864] [Citation(s) in RCA: 77] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Abstract
A study was conducted to identify the cytochrome P450 (CYP, CYP450) enzyme orthologs involved in the bioactivation of aflatoxin B(1) (AFB(1)) into the highly toxic metabolite known as aflatoxin-8,9-epoxide (AFBO) in quail and chicken hepatic microsomes. The strategies used included the use of specific CYP450 inhibitors and the correlation of prototype substrate activities with AFBO production. Additionally, the presence of the enzymes was qualitatively determined using an immunoblotting technique. The results showed that both quail and chicken microsomes have CYP1A1, CYP1A2, CYP2A6, and CYP3A4 enzymatic activity. A strong relationship between CYP1A1 and CYP2A6 activities and AFB(1) bioactivation was found in both species. Inhibition studies provided more evidence for the role of CYP2A6 in the bioactivation of AFB(1). The immunoblot results showed clear bands for the CYP2A6 and CYP3A4 orthologs in both species. The results of the present study indicate that CYP2A6 and, to a lesser extent, CYP1A1 are responsible for the bioactivation of AFB(1) into AFBO in both quail and chicken hepatic microsomes.
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Affiliation(s)
- G J Diaz
- Laboratorio de Toxicología, Facultad de Medicina Veterinaria y de Zootecnia, Universidad Nacional de Colombia, Bogotá, D.C. Colombia.
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59
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Katic J, Cemeli E, Baumgartner A, Laubenthal J, Bassano I, Stølevik SB, Granum B, Namork E, Nygaard UC, Løvik M, Leeuwen DV, Loock KV, Anderson D, Fučić A, Decordier I. Evaluation of the genotoxicity of 10 selected dietary/environmental compounds with the in vitro micronucleus cytokinesis-block assay in an interlaboratory comparison. Food Chem Toxicol 2010; 48:2612-23. [DOI: 10.1016/j.fct.2010.06.030] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2010] [Revised: 06/10/2010] [Accepted: 06/17/2010] [Indexed: 02/02/2023]
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60
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Ferguson LR. Dietary influences on mutagenesis--where is this field going? ENVIRONMENTAL AND MOLECULAR MUTAGENESIS 2010; 51:909-918. [PMID: 20740647 DOI: 10.1002/em.20594] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Early studies on dietary mutagenesis were mostly observational, with large numbers of potential dietary mutagens being identified from every conceivable dietary source. These included known dietary carcinogens such as aflatoxin B1 and benzo[a]pyrene, and hitherto unrecognized dietary mutagens, such as the pyrolysis products formed during the heating of proteinaceous materials (heterocyclic amines). The 1993 evaluation of 2-amino-3-methyl-3H-imidazo(4,5-j)quinoline as a probable human carcinogen by the International Agency for Research on Cancer was a landmark, as this was done in the absence of specific human carcinogenicity data, and strongly influenced by mutagenicity test data. In the 21st century, the field has moved from the identification of more and more mutagens, to molecular epidemiologic approaches that not only show a mutagenic effect but also seek to link it to a dietary (or environmental) cause. Effects of diet in stimulating chronic inflammation may lead to reactive species and thereby mutation as a secondary consequence, while dietary deficiencies and nutrient imbalances may be strong sources of mutagenesis. Recognition of the roles of nutrients in cell signaling processes and control of microRNAs suggest major influences on gene expression, in the absence of permanent DNA changes. Genome-wide association studies have highlighted new pathways such as JAK/STAT signaling that profoundly influence genomic instability and responses to dietary mutagens. With improved methodologies for DNA sequencing and epigenetic changes, it is time to apply more sophisticated approaches to recognizing and proving the role of diet as a primary modulator of mutagenesis in humans.
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Affiliation(s)
- Lynnette R Ferguson
- Discipline of Nutrition, Faculty of Medical & Health Science, The University of Auckland, Auckland, New Zealand.
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61
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Fenech MF. Nutriomes and nutrient arrays - the key to personalised nutrition for DNA damage prevention and cancer growth control. Genome Integr 2010; 1:11. [PMID: 20704708 PMCID: PMC2927499 DOI: 10.1186/2041-9414-1-11] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2010] [Accepted: 08/12/2010] [Indexed: 11/26/2022] Open
Abstract
DNA damage at the base-sequence, epigenome and chromosome level is a fundamental cause of developmental and degenerative diseases. Multiple micronutrients and their interactions with the inherited and/or acquired genome determine DNA damage and genomic instability rates. The challenge is to identify for each individual the combination of micronutrients and their doses (i.e. the nutriome) that optimises genome stability and DNA repair. In this paper I describe and propose the use of high-throughput nutrient array systems with high content analysis diagnostics of DNA damage, cell death and cell growth for defining, on an individual basis, the optimal nutriome for DNA damage prevention and cancer growth control.
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Affiliation(s)
- Michael F Fenech
- CSIRO Food and Nutritional Sciences, PO Box 10041 Adelaide BC, SA, 5000, Australia.
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62
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Fenech MF. Dietary reference values of individual micronutrients and nutriomes for genome damage prevention: current status and a road map to the future. Am J Clin Nutr 2010; 91:1438S-1454S. [PMID: 20219957 DOI: 10.3945/ajcn.2010.28674d] [Citation(s) in RCA: 99] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Damage to the genome is recognized as a fundamental cause of developmental and degenerative diseases. Several micronutrients play an important role in protecting against DNA damage events generated through endogenous and exogenous factors by acting as cofactors or substrates for enzymes that detoxify genotoxins as well as enzymes involved in DNA repair, methylation, and synthesis. In addition, it is evident that either micronutrient deficiency or micronutrient excess can modify genome stability and that these effects may also depend on nutrient-nutrient and nutrient-gene interaction, which is affected by genotype. These observations have led to the emerging science of genome health nutrigenomics, which is based on the principle that DNA damage is a fundamental cause of disease that can be diagnosed and nutritionally prevented on an individual, genetic subgroup, or population basis. In this article, the following topics are discussed: 1) biomarkers used to study genome damage in humans and their validation, 2) evidence for the association of genome damage with developmental and degenerative disease, 3) current knowledge of micronutrients required for the maintenance of genome stability in humans, 4) the effect of nutrient-nutrient and nutrient-genotype interaction on DNA damage, and 5) strategies to determine dietary reference values of single micronutrients and micronutrient combinations (nutriomes) on the basis of DNA damage prevention. This article also identifies important knowledge gaps and future research directions required to shed light on these issues. The ultimate goal is to match the nutriome to the genome to optimize genome maintenance and to prevent pathologic amounts of DNA damage.
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Affiliation(s)
- Michael F Fenech
- Commonwealth Scientific and Industrial Research Organisation Food and Nutritional Sciences, Adelaide BC SA 5000, Australia.
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Madrigal-Santillán E, Morales-González JA, Vargas-Mendoza N, Reyes-Ramírez P, Cruz-Jaime S, Sumaya-Martínez T, Pérez-Pastén R, Madrigal-Bujaidar E. Antigenotoxic studies of different substances to reduce the DNA damage induced by aflatoxin B(1) and ochratoxin A. Toxins (Basel) 2010; 2:738-757. [PMID: 22069607 PMCID: PMC3153197 DOI: 10.3390/toxins2040738] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2010] [Revised: 04/08/2010] [Accepted: 04/13/2010] [Indexed: 02/07/2023] Open
Abstract
Mycotoxins are produced mainly by the mycelial structure of filamentous fungi, or more specifically, molds. These secondary metabolites are synthesized during the end of the exponential growth phase and appear to have no biochemical significance in fungal growth and development. The contamination of foods and feeds with mycotoxins is a significant problem for the adverse effects on humans, animals, and crops that result in illnesses and economic losses. The toxic effect of the ingestion of mycotoxins in humans and animals depends on a number of factors including intake levels, duration of exposure, toxin species, mechanisms of action, metabolism, and defense mechanisms. In general, the consumption of contaminated food and feed with mycotoxin induces to neurotoxic, immunosuppressive, teratogenic, mutagenic, and carcinogenic effect in humans and/or animals. The most significant mycotoxins in terms of public health and agronomic perspective include the aflatoxins, ochratoxin A (OTA), trichothecenes, fumonisins, patulin, and the ergot alkaloids. Due to the detrimental effects of these mycotoxins, several strategies have been developed in order to reduce the risk of exposure. These include the degradation, destruction, inactivation or removal of mycotoxins through chemical, physical and biological methods. However, the results obtained with these methods have not been optimal, because they may change the organoleptic characteristics and nutritional values of food. Another alternative strategy to prevent or reduce the toxic effects of mycotoxins is by applying antimutagenic agents. These substances act according to several extra- or intracellular mechanisms, their main goal being to avoid the interaction of mycotoxins with DNA; as a consequence of their action, these agents would inhibit mutagenesis and carcinogenesis. This article reviews the main strategies used to control AFB(1) and ochratoxin A and contains an analysis of some antigenotoxic substances that reduce the DNA damage caused by these mycotoxins.
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Affiliation(s)
- Eduardo Madrigal-Santillán
- Instituto de Ciencias de la Salud, Universidad Autónoma del Estado de Hidalgo., Ex-Hacienda de la Concepción. Tilcuautla. Pachuca de Soto, Hidalgo. CP 42080, México; (J.A.M.); (N.V.); (P.R.); (S.C.); (T.S.)
- Laboratorio de Genética, Escuela Nacional de Ciencias Biológicas, I.P.N., Av. Wilfrido Massieu. Unidad A. López Mateos. Zacatenco. Col Lindavista. D.F. CP 07738, México; (E.M.B.)
| | - José A. Morales-González
- Instituto de Ciencias de la Salud, Universidad Autónoma del Estado de Hidalgo., Ex-Hacienda de la Concepción. Tilcuautla. Pachuca de Soto, Hidalgo. CP 42080, México; (J.A.M.); (N.V.); (P.R.); (S.C.); (T.S.)
| | - Nancy Vargas-Mendoza
- Instituto de Ciencias de la Salud, Universidad Autónoma del Estado de Hidalgo., Ex-Hacienda de la Concepción. Tilcuautla. Pachuca de Soto, Hidalgo. CP 42080, México; (J.A.M.); (N.V.); (P.R.); (S.C.); (T.S.)
| | - Patricia Reyes-Ramírez
- Instituto de Ciencias de la Salud, Universidad Autónoma del Estado de Hidalgo., Ex-Hacienda de la Concepción. Tilcuautla. Pachuca de Soto, Hidalgo. CP 42080, México; (J.A.M.); (N.V.); (P.R.); (S.C.); (T.S.)
| | - Sandra Cruz-Jaime
- Instituto de Ciencias de la Salud, Universidad Autónoma del Estado de Hidalgo., Ex-Hacienda de la Concepción. Tilcuautla. Pachuca de Soto, Hidalgo. CP 42080, México; (J.A.M.); (N.V.); (P.R.); (S.C.); (T.S.)
| | - Teresa Sumaya-Martínez
- Instituto de Ciencias de la Salud, Universidad Autónoma del Estado de Hidalgo., Ex-Hacienda de la Concepción. Tilcuautla. Pachuca de Soto, Hidalgo. CP 42080, México; (J.A.M.); (N.V.); (P.R.); (S.C.); (T.S.)
| | - Ricardo Pérez-Pastén
- Laboratorio de Toxicología Preclínica, Escuela Nacional de Ciencias Biológicas, I.P.N., Av. Wilfrido Massieu. Unidad A. López Mateos. Zacatenco. Col Lindavista. D.F. CP 07738, México; (R.P.)
| | - Eduardo Madrigal-Bujaidar
- Laboratorio de Genética, Escuela Nacional de Ciencias Biológicas, I.P.N., Av. Wilfrido Massieu. Unidad A. López Mateos. Zacatenco. Col Lindavista. D.F. CP 07738, México; (E.M.B.)
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Fu WJ, Stromberg AJ, Viele K, Carroll RJ, Wu G. Statistics and bioinformatics in nutritional sciences: analysis of complex data in the era of systems biology. J Nutr Biochem 2010; 21:561-72. [PMID: 20233650 DOI: 10.1016/j.jnutbio.2009.11.007] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2008] [Revised: 11/10/2009] [Accepted: 11/12/2009] [Indexed: 10/19/2022]
Abstract
Over the past 2 decades, there have been revolutionary developments in life science technologies characterized by high throughput, high efficiency, and rapid computation. Nutritionists now have the advanced methodologies for the analysis of DNA, RNA, protein, low-molecular-weight metabolites, as well as access to bioinformatics databases. Statistics, which can be defined as the process of making scientific inferences from data that contain variability, has historically played an integral role in advancing nutritional sciences. Currently, in the era of systems biology, statistics has become an increasingly important tool to quantitatively analyze information about biological macromolecules. This article describes general terms used in statistical analysis of large, complex experimental data. These terms include experimental design, power analysis, sample size calculation, and experimental errors (Type I and II errors) for nutritional studies at population, tissue, cellular, and molecular levels. In addition, we highlighted various sources of experimental variations in studies involving microarray gene expression, real-time polymerase chain reaction, proteomics, and other bioinformatics technologies. Moreover, we provided guidelines for nutritionists and other biomedical scientists to plan and conduct studies and to analyze the complex data. Appropriate statistical analyses are expected to make an important contribution to solving major nutrition-associated problems in humans and animals (including obesity, diabetes, cardiovascular disease, cancer, ageing, and intrauterine growth retardation).
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Affiliation(s)
- Wenjiang J Fu
- Department of Epidemiology, Michigan State University, East Lansing, MI 48824, USA
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65
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Dani C, Oliboni LS, Umezu FM, Pasquali MA, Salvador M, Moreira JCF, Henriques JAP. Antioxidant and Antigenotoxic Activities of Purple Grape Juice—Organic and Conventional—in Adult Rats. J Med Food 2009; 12:1111-8. [DOI: 10.1089/jmf.2008.0256] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Caroline Dani
- Instituto de Biotecnologia, Universidade de Caxias do Sul, Caxias do Sul, Brazil
| | - Lívia S. Oliboni
- Instituto de Biotecnologia, Universidade de Caxias do Sul, Caxias do Sul, Brazil
| | - Fernanda M. Umezu
- Instituto de Biotecnologia, Universidade de Caxias do Sul, Caxias do Sul, Brazil
| | - Matheus A.B. Pasquali
- Centro de Estudos em Estresse Oxidativo, Departamento de Bioquímica, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Mirian Salvador
- Instituto de Biotecnologia, Universidade de Caxias do Sul, Caxias do Sul, Brazil
| | - José Cláudio Fonseca Moreira
- Centro de Estudos em Estresse Oxidativo, Departamento de Bioquímica, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
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Abstract
PURPOSE OF REVIEW To provide an updated summary of dietary mutagens and their potential role in the etiology of cancer and atherosclerosis. RECENT FINDINGS Compelling evidence supports an accumulation of somatic mutations during carcinogenesis, leading to the activation of oncogenes or inactivation of tumor suppressor genes or both. There is also suggestive evidence that mutation provides an early event in atherosclerosis. Genome-wide association studies (GWAS) identify genes associated with familial cancers and atherosclerosis, but genes involved in sporadic events are less well characterized. Many dietary components are mutagenic, including natural dietary components, mutagens generated during cooking and processing of food or through contamination. Molecular epidemiology associates specific mutagens with specific types of cancer. Although chromosome mutations may provide a risk biomarker for atherosclerosis, they are not necessarily causal. SUMMARY Association studies, supported by molecular epidemiology, provide evidence that certain dietary mutagens, including aflatoxin B1, aristolochic acid and benzo[a]pyrene, are causal in some human cancers. Similar studies have correlated the level of oxidative DNA damage, DNA adducts and clastogenesis in arterial smooth muscle cells with atherogenic risk factors described through traditional epidemiology. However, establishing whether or not dietary mutagens lead to mutations that are causal in atherosclerosis remains a challenge for the newer genomic technologies.
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Affiliation(s)
- Lynnette R Ferguson
- Faculty of Medical and Health Sciences, Discipline of Nutrition, The University of Auckland, Auckland, New Zealand.
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67
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Abstract
An increasing literature associates high intake of meat, especially red meat and processed meat with an increased risk of cancers, especially colorectal cancer. There is evidence that this risk may not be a function of meat per se, but may reflect high-fat intake, and/or carcinogens generated through various cooking and processing methods. The cancer risk may be modulated by certain genotypes. Cancers associated with high meat consumption may be reduced by the addition of anticarcinogens in the diet, especially at the same time as meat preparation or meat consumption, or modification of food preparation methods. Meat contains potential anticarcinogens, including omega-3 polyunsaturated fatty acids, and conjugated linoleic acid (CLA). Red meat, in particular, is an important source of micronutrients with anticancer properties, including selenium, vitamin B6 and B12, and vitamin D. Adjusting the balance between meat and other dietary components may be critical to protecting against potential cancer risks.
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Affiliation(s)
- Lynnette R Ferguson
- Discipline of Nutrition, Faculty of Medical and Health Sciences, The University of Auckland, Private Bag 92019, Auckland, New Zealand.
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Inhibition of mitomycin C-induced chromosomal aberrations by micrometer powder of selenium-enriched green tea in mice spermatocytes. MUTATION RESEARCH-GENETIC TOXICOLOGY AND ENVIRONMENTAL MUTAGENESIS 2009; 675:11-6. [DOI: 10.1016/j.mrgentox.2009.01.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2008] [Revised: 01/16/2009] [Accepted: 01/25/2009] [Indexed: 11/20/2022]
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69
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Abstract
Based on analysis of mainly own data the author discusses the methodological problems of studies of modification of chemical mutagenesis, offers general recommendations for planning and realization of experiments, and analyzes possible trends in research and prospects for practical application of the results.
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70
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Ji Q, Yoon SB, Hill JP, Vinu A, Yu JS, Ariga K. Layer-by-Layer Films of Dual-Pore Carbon Capsules with Designable Selectivity of Gas Adsorption. J Am Chem Soc 2009; 131:4220-1. [DOI: 10.1021/ja9010354] [Citation(s) in RCA: 131] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Qingmin Ji
- World Premier International (WPI) Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki, 305-0044, Japan, and Department of Advanced Materials Chemistry, BK21 Research Team, Korea University, 208 Seochang, Jochiwon, ChungNam 339-700, Korea
| | - Suk Bon Yoon
- World Premier International (WPI) Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki, 305-0044, Japan, and Department of Advanced Materials Chemistry, BK21 Research Team, Korea University, 208 Seochang, Jochiwon, ChungNam 339-700, Korea
| | - Jonathan P. Hill
- World Premier International (WPI) Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki, 305-0044, Japan, and Department of Advanced Materials Chemistry, BK21 Research Team, Korea University, 208 Seochang, Jochiwon, ChungNam 339-700, Korea
| | - Ajayan Vinu
- World Premier International (WPI) Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki, 305-0044, Japan, and Department of Advanced Materials Chemistry, BK21 Research Team, Korea University, 208 Seochang, Jochiwon, ChungNam 339-700, Korea
| | - Jong-Sung Yu
- World Premier International (WPI) Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki, 305-0044, Japan, and Department of Advanced Materials Chemistry, BK21 Research Team, Korea University, 208 Seochang, Jochiwon, ChungNam 339-700, Korea
| | - Katsuhiko Ariga
- World Premier International (WPI) Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki, 305-0044, Japan, and Department of Advanced Materials Chemistry, BK21 Research Team, Korea University, 208 Seochang, Jochiwon, ChungNam 339-700, Korea
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71
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