101
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Zobel JP, Bokareva OS, Zimmer P, Wölper C, Bauer M, González L. Intersystem Crossing and Triplet Dynamics in an Iron(II) N-Heterocyclic Carbene Photosensitizer. Inorg Chem 2020; 59:14666-14678. [PMID: 32869981 PMCID: PMC7581298 DOI: 10.1021/acs.inorgchem.0c02147] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
![]()
The electronic excited
states of the iron(II) complex [FeII(tpy)(pyz-NHC)]2+ [tpy = 2,2′:6′,2″-terpyridine; pyz-NHC
= 1,1′-bis(2,6-diisopropylphenyl)pyrazinyldiimidazolium-2,2′-diylidene]
and their relaxation pathways have been theoretically investigated.
To this purpose, trajectory surface-hopping simulations within a linear
vibronic coupling model including a 244-dimensional potential energy
surface (PES) with 20 singlet and 20 triplet coupled states have been
used. The simulations show that, after excitation to the lowest-energy
absorption band of predominant metal-to-ligand charge-transfer character
involving the tpy ligand, almost 80% of the population undergoes intersystem
crossing to the triplet manifold in about 50 fs, while the remaining
20% decays through internal conversion to the electronic ground state
in about 300 fs. The population transferred to the triplet states
is found to deactivate into two different regions of the PESs, one
where the static dipole moment is small and shows increased metal-centered
character and another with a large static dipole moment, where the
electron density is transferred from the tpy to pyz-NHC ligand. Coherent
oscillations of 400 fs are observed between these two sets of triplet
populations, until the mixture equilibrates to a ratio of 60:40. Finally,
the importance of selecting suitable normal modes is highlighted—a
choice that can be far from straightforward in transition-metal complexes
with hundreds of degrees of freedom. Trajectory
surface-hopping simulations with a linear vibronic coupling model
reveal the competition of major intersystem crossing versus minor
internal conversion dynamics in an iron(II) N-heterocyclic carbene
dye. The triplet population bifurcates into two regions of the potential
energy surfaces, characterized by small and large static dipole moments
due to different electronic character and showing coherent oscillations
of 400 fs until both triplet populations coexist in a mixture of 60:40.
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Affiliation(s)
- J Patrick Zobel
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währingerstraße 19, 1090 Vienna, Austria
| | - Olga S Bokareva
- Institute of Physics, Rostock University, Albert Einstein Straße 23-24, 18059 Rostock, Germany
| | - Peter Zimmer
- Faculty of Science, Chemistry Department and Center for Sustainable Systems Design (CSSD), Paderborn University, Warburger Straße 100, 33098 Paderborn, Germany
| | - Christoph Wölper
- Department for X-Ray Diffraction, Inorganic Chemistry, University of Duisburg-Essen, Universitätsstraße 7, D-45117 Essen, Germany
| | - Matthias Bauer
- Faculty of Science, Chemistry Department and Center for Sustainable Systems Design (CSSD), Paderborn University, Warburger Straße 100, 33098 Paderborn, Germany
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währingerstraße 19, 1090 Vienna, Austria.,Vienna Research Platform on Accelerating Photoreaction Discovery, University of Vienna, Währingerstr. 19, 1090 Vienna, Austria
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102
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Suchan J, Janoš J, Slavíček P. Pragmatic Approach to Photodynamics: Mixed Landau–Zener Surface Hopping with Intersystem Crossing. J Chem Theory Comput 2020; 16:5809-5820. [DOI: 10.1021/acs.jctc.0c00512] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Jiří Suchan
- Department of Physical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 16628 Prague, Czech Republic
| | - Jiří Janoš
- Department of Physical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 16628 Prague, Czech Republic
| | - Petr Slavíček
- Department of Physical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 16628 Prague, Czech Republic
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103
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Curchod BFE, Glover WJ, Martínez TJ. SSAIMS-Stochastic-Selection Ab Initio Multiple Spawning for Efficient Nonadiabatic Molecular Dynamics. J Phys Chem A 2020; 124:6133-6143. [PMID: 32580552 DOI: 10.1021/acs.jpca.0c04113] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Ab initio multiple spawning provides a powerful and accurate way of describing the excited-state dynamics of molecular systems, whose strength resides in the proper description of coherence effects during nonadiabatic processes thanks to the coupling of trajectory basis functions. However, the simultaneous propagation of a large number of trajectory basis functions can be numerically inconvenient. We propose here an elegant and simple solution to this issue, which consists of (i) detecting uncoupled groups of coupled trajectory basis functions and (ii) selecting stochastically one of these groups to continue the ab initio multiple spawning dynamics. We show that this procedure can reproduce the results of full ab initio multiple spawning dynamics in cases where the uncoupled groups of trajectory basis functions stay uncoupled throughout the dynamics (which is often the case in high-dimensional problems). We present and discuss the aforementioned idea in detail and provide simple numerical applications on indole, ethylene, and protonated formaldimine, highlighting the potential of stochastic-selection ab initio multiple spawning.
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Affiliation(s)
- Basile F E Curchod
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - William J Glover
- NYU Shanghai, 1555 Century Ave., Shanghai 200122, China.,NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai 200062, China.,Department of Chemistry, New York University, New York, New York 10003, United States
| | - Todd J Martínez
- Department of Chemistry and the PULSE Institute, Stanford University, Stanford, California 94305, United States.,SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
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104
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Gong Q, Li Y, Liu F. Trajectory surface-hopping dynamics of light-driven imine switches. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2020.137506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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105
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Matthews DA, Cheng L, Harding ME, Lipparini F, Stopkowicz S, Jagau TC, Szalay PG, Gauss J, Stanton JF. Coupled-cluster techniques for computational chemistry: The CFOUR program package. J Chem Phys 2020; 152:214108. [DOI: 10.1063/5.0004837] [Citation(s) in RCA: 214] [Impact Index Per Article: 42.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Affiliation(s)
- Devin A. Matthews
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, USA
| | - Lan Cheng
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, USA
| | - Michael E. Harding
- Institut für Physikalische Chemie, Karlsruher Institut für Technologie (KIT), Kaiserstr. 12, D-76131 Karlsruhe, Germany
| | - Filippo Lipparini
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via G. Moruzzi 13, I-56124 Pisa, Italy
| | - Stella Stopkowicz
- Department Chemie, Johannes Gutenberg-Universität Mainz, Duesbergweg 10-14, D-55128 Mainz, Germany
| | - Thomas-C. Jagau
- Department of Chemistry, University of Munich (LMU), Butenandtstr. 5-13, D-81377 Munich, Germany
| | - Péter G. Szalay
- ELTE Eötvös Loránd University, Institute of Chemistry, Pázmány Péter sétány 1/A, H-1117 Budapest, Hungary
| | - Jürgen Gauss
- Department Chemie, Johannes Gutenberg-Universität Mainz, Duesbergweg 10-14, D-55128 Mainz, Germany
| | - John F. Stanton
- Quantum Theory Project, Departments of Chemistry and Physics, University of Florida, Gainesville, Florida 32611, USA
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106
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Lischka H, Shepard R, Müller T, Szalay PG, Pitzer RM, Aquino AJA, Araújo do Nascimento MM, Barbatti M, Belcher LT, Blaudeau JP, Borges I, Brozell SR, Carter EA, Das A, Gidofalvi G, González L, Hase WL, Kedziora G, Kertesz M, Kossoski F, Machado FBC, Matsika S, do Monte SA, Nachtigallová D, Nieman R, Oppel M, Parish CA, Plasser F, Spada RFK, Stahlberg EA, Ventura E, Yarkony DR, Zhang Z. The generality of the GUGA MRCI approach in COLUMBUS for treating complex quantum chemistry. J Chem Phys 2020; 152:134110. [PMID: 32268762 DOI: 10.1063/1.5144267] [Citation(s) in RCA: 52] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
The core part of the program system COLUMBUS allows highly efficient calculations using variational multireference (MR) methods in the framework of configuration interaction with single and double excitations (MR-CISD) and averaged quadratic coupled-cluster calculations (MR-AQCC), based on uncontracted sets of configurations and the graphical unitary group approach (GUGA). The availability of analytic MR-CISD and MR-AQCC energy gradients and analytic nonadiabatic couplings for MR-CISD enables exciting applications including, e.g., investigations of π-conjugated biradicaloid compounds, calculations of multitudes of excited states, development of diabatization procedures, and furnishing the electronic structure information for on-the-fly surface nonadiabatic dynamics. With fully variational uncontracted spin-orbit MRCI, COLUMBUS provides a unique possibility of performing high-level calculations on compounds containing heavy atoms up to lanthanides and actinides. Crucial for carrying out all of these calculations effectively is the availability of an efficient parallel code for the CI step. Configuration spaces of several billion in size now can be treated quite routinely on standard parallel computer clusters. Emerging developments in COLUMBUS, including the all configuration mean energy multiconfiguration self-consistent field method and the graphically contracted function method, promise to allow practically unlimited configuration space dimensions. Spin density based on the GUGA approach, analytic spin-orbit energy gradients, possibilities for local electron correlation MR calculations, development of general interfaces for nonadiabatic dynamics, and MRCI linear vibronic coupling models conclude this overview.
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Affiliation(s)
- Hans Lischka
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - Ron Shepard
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Thomas Müller
- Institute for Advanced Simulation, Jülich Supercomputing Centre, Forschungszentrum Jülich, Jülich 52428, Germany
| | - Péter G Szalay
- ELTE Eötvös Loránd University, Institute of Chemistry, Budapest, Hungary
| | - Russell M Pitzer
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA
| | - Adelia J A Aquino
- School of Pharmaceutical Sciences and Technology, Tianjin University, Tianjin 300072, People's Republic of China
| | | | | | - Lachlan T Belcher
- Laser and Optics Research Center, Department of Physics, US Air Force Academy, Colorado 80840, USA
| | | | - Itamar Borges
- Departamento de Química, Instituto Militar de Engenharia, Rio de Janeiro, RJ 22290-270, Brazil
| | - Scott R Brozell
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Emily A Carter
- Office of the Chancellor and Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, Box 951405, Los Angeles, California 90095-1405, USA
| | - Anita Das
- Indian Institute of Engineering Science and Technology, Shibpur, Howrah, India
| | - Gergely Gidofalvi
- Department of Chemistry and Biochemistry, Gonzaga University, Spokane, Washington 99258, USA
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| | - William L Hase
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - Gary Kedziora
- Air Force Research Laboratory, Wright-Patterson Air Force Base, Ohio 45433, USA
| | - Miklos Kertesz
- Department of Chemistry, Georgetown University, 37th and O Streets, NW, Washington, DC 20057-1227, USA
| | | | - Francisco B C Machado
- Departamento de Química, Instituto Tecnológico de Aeronáutica, São José dos Campos 12228-900, São Paulo, Brazil
| | - Spiridoula Matsika
- Department of Chemistry, Temple University, 1901 N. 13th St., Philadelphia, Pennsylvania 19122, USA
| | | | - Dana Nachtigallová
- Institute of Organic Chemistry and Biochemistry v.v.i., The Czech Academy of Sciences, Flemingovo nám. 2, 160610 Prague 6, Czech Republic
| | - Reed Nieman
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - Markus Oppel
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| | - Carol A Parish
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, Richmond, Virginia 23173, USA
| | - Felix Plasser
- Department of Chemistry, Loughborough University, Loughborough LE11 3TU, United Kingdom
| | - Rene F K Spada
- Departamento de Física, Instituto Tecnológico de Aeronáutica, São José dos Campos 12228-900, São Paulo, Brazil
| | - Eric A Stahlberg
- Biomedical Informatics and Data Science, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, USA
| | - Elizete Ventura
- Universidade Federal da Paraíba, 58059-900 João Pessoa, PB, Brazil
| | - David R Yarkony
- Department of Chemistry, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218, USA
| | - Zhiyong Zhang
- Stanford Research Computing Center, Stanford University, 255 Panama Street, Stanford, California 94305, USA
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107
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Park JW, Al-Saadon R, MacLeod MK, Shiozaki T, Vlaisavljevich B. Multireference Electron Correlation Methods: Journeys along Potential Energy Surfaces. Chem Rev 2020; 120:5878-5909. [PMID: 32239929 DOI: 10.1021/acs.chemrev.9b00496] [Citation(s) in RCA: 79] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Multireference electron correlation methods describe static and dynamical electron correlation in a balanced way and, therefore, can yield accurate and predictive results even when single-reference methods or multiconfigurational self-consistent field theory fails. One of their most prominent applications in quantum chemistry is the exploration of potential energy surfaces. This includes the optimization of molecular geometries, such as equilibrium geometries and conical intersections and on-the-fly photodynamics simulations, both of which depend heavily on the ability of the method to properly explore the potential energy surface. Because such applications require nuclear gradients and derivative couplings, the availability of analytical nuclear gradients greatly enhances the scope of quantum chemical methods. This review focuses on the developments and advances made in the past two decades. A detailed account of the analytical nuclear gradient and derivative coupling theories is presented. Emphasis is given to the software infrastructure that allows one to make use of these methods. Notable applications of multireference electron correlation methods to chemistry, including geometry optimizations and on-the-fly dynamics, are summarized at the end followed by a discussion of future prospects.
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Affiliation(s)
- Jae Woo Park
- Department of Chemistry, Chungbuk National University, Chungdae-ro 1, Cheongju 28644, Korea
| | - Rachael Al-Saadon
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Matthew K MacLeod
- Workday, 4900 Pearl Circle East, Suite 100, Boulder, Colorado 80301, United States
| | - Toru Shiozaki
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.,Quantum Simulation Technologies, Inc., 625 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - Bess Vlaisavljevich
- Department of Chemistry, University of South Dakota, 414 East Clark Street, Vermillion, South Dakota 57069, United States
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108
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R S L, Kurup GB, Vennapusa SR. Identification of a receiver triplet state in the ultrafast intersystem crossing of carbonylpyrenes. Phys Chem Chem Phys 2020; 22:6145-6153. [PMID: 32124884 DOI: 10.1039/c9cp06857k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The near-unity triplet quantum yield of photoexcited carbonyl functionalized pyrenes is theoretically investigated. The estimated energetics of singlet-triplet manifolds and relevant spin-orbit coupling parameters strongly suggest triplet state formation via the S1→ T4/T5 pathway. Quantum wavepacket dynamics of triplet manifolds within the linear vibronic coupling approach reveal that the receiver triplet state would undergo rapid internal conversion decay to the lower triplet state(s), facilitating efficient triplet generation by minimizing the reverse intersystem crossing possibilities. On the basis of these results, a unified mechanism is proposed to describe the ultrafast intersystem crossing process in these molecules.
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Affiliation(s)
- Lekshmi R S
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER TVM), Maruthamala P.O., Vithura, Thiruvananthapuram 695551, Kerala, India.
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109
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Mai S, Menger MFSJ, Marazzi M, Stolba DL, Monari A, González L. Competing ultrafast photoinduced electron transfer and intersystem crossing of [Re(CO) 3 (Dmp)(His124)(Trp122)] + in Pseudomonas aeruginosa azurin: a nonadiabatic dynamics study. Theor Chem Acc 2020; 139:65. [PMID: 32214889 PMCID: PMC7078154 DOI: 10.1007/s00214-020-2555-6] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Accepted: 01/20/2020] [Indexed: 12/28/2022]
Abstract
We present a computational study of sub-picosecond nonadiabatic dynamics in a rhenium complex coupled electronically to a tryptophan (Trp) side chain of Pseudomonas aeruginosa azurin, a prototypical protein used in the study of electron transfer in proteins. To gain a comprehensive understanding of the photoinduced processes in this system, we have carried out vertical excitation calculations at the TDDFT level of theory as well as nonadiabatic dynamics simulations using the surface hopping including arbitrary couplings (SHARC) method coupled to potential energy surfaces represented with a linear vibronic coupling model. The results show that the initial photoexcitation populates both singlet metal-to-ligand charge transfer (MLCT) and singlet charge-separated (CS) states, where in the latter an electron was transferred from the Trp amino acid to the complex. Subsequently, a complex mechanism of simultaneous intersystem crossing and electron transfer leads to the sub-picosecond population of triplet MLCT and triplet CS states. These results confirm the assignment of the sub-ps time constants of previous experimental studies and constitute the first computational evidence for the ultrafast formation of the charge-separated states in Re-sensitized azurin.
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Affiliation(s)
- Sebastian Mai
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
- Present Address: Photonics Institute, Vienna University of Technology, Gußhausstr. 27–29, 1040 Vienna, Austria
| | - Maximilian F. S. J. Menger
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
- Present Address: Zernike Institute for Advanced Materials, Faculty of Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Marco Marazzi
- Department of Analytical Chemistry, Physical Chemistry and Chemical Engineering, Universidad de Alcalá, Ctra. Madrid-Barcelona Km. 33,600, 28871 Alcalá de Henares, Madrid Spain
- Chemical Research Institute “Andrés M. del Río” (IQAR), Universidad de Alcalá, 28871 Alcalá de Henares, Madrid Spain
| | - Dario L. Stolba
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
| | - Antonio Monari
- Université de Lorraine and CNRS, LPTC UMR, 7019 Nancy, France
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
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110
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Sarkar R, Heitz MC, Royal G, Boggio-Pasqua M. Electronic Excited States and UV-Vis Absorption Spectra of the Dihydropyrene/Cyclophanediene Photochromic Couple: a Theoretical Investigation. J Phys Chem A 2020; 124:1567-1579. [PMID: 32017559 DOI: 10.1021/acs.jpca.9b11262] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Dihydropyrene (DHP)/cyclophanediene (CPD) is a fascinating photoswitchable organic system displaying negative photochromism. Upon irradiation in the visible region, the colored DHP can be converted to its open-ring CPD colorless isomer, which can be converted back to DHP by UV light. DHP and CPD thus possess very different absorption spectra whose absorption bands have never been assigned in detail so far. In this work, we characterize the vertical electronic transitions of the first six and seven excited states of DHP and CPD, respectively, aiming for a realistic comparison with experiment. We used state-of-the-art electronic structure methods [e.g., complete active space second-order perturbation theory (CASPT2), n-electron valence-state perturbation theory (NEVPT2), extended multiconfigurational quasi-degenerate perturbation theory (XMCQDPT2), and third-order algebraic diagrammatic construction ADC(3)] capable of describing differential electron correlation. Vertical transition energies were also computed with time-dependent density functional theory (TD-DFT) and compared to these accurate methods. After the reliability of TD-DFT was validated for the main optical transitions, this efficient method was used to simulate the absorption spectra of DHP and CPD in the framework of the Franck-Condon Herzberg-Teller approximation and also using the nuclear ensemble approach. Overall, for both methods, the simulated absorption spectra reproduce nicely the main spectral features of the DHP and CPD isomers, that is, the main four absorption bands of increasing intensity of DHP and the absorption rise below 300 nm for CPD.
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Affiliation(s)
- Rudraditya Sarkar
- Laboratoire de Chimie et Physique Quantiques , UMR 5626, IRSAMC, CNRS et Université Toulouse 3 , 118 Route de Narbonne , 31062 Toulouse , France
| | - Marie-Catherine Heitz
- Laboratoire de Chimie et Physique Quantiques , UMR 5626, IRSAMC, CNRS et Université Toulouse 3 , 118 Route de Narbonne , 31062 Toulouse , France
| | - Guy Royal
- Université Grenoble Alpes , CNRS, DCM , F-38000 Grenoble , France
| | - Martial Boggio-Pasqua
- Laboratoire de Chimie et Physique Quantiques , UMR 5626, IRSAMC, CNRS et Université Toulouse 3 , 118 Route de Narbonne , 31062 Toulouse , France
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111
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Smith B, Akimov AV. Modeling nonadiabatic dynamics in condensed matter materials: some recent advances and applications. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2020; 32:073001. [PMID: 31661681 DOI: 10.1088/1361-648x/ab5246] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
This review focuses on recent developments in the field of nonadiabatic molecular dynamics (NA-MD), with particular attention given to condensed-matter systems. NA-MD simulations for small molecular systems can be performed using high-level electronic structure (ES) calculations, methods accounting for the quantization of nuclear motion, and using fewer approximations in the dynamical methodology itself. Modeling condensed-matter systems imposes many limitations on various aspects of NA-MD computations, requiring approximations at various levels of theory-from the ES, to the ways in which the coupling of electrons and nuclei are accounted for. Nonetheless, the approximate treatment of NA-MD in condensed-phase materials has gained a spin lately in many applied studies. A number of advancements of the methodology and computational tools have been undertaken, including general-purpose methods, as well as those tailored to nanoscale and condensed matter systems. This review summarizes such methodological and software developments, puts them into the broader context of existing approaches, and highlights some of the challenges that remain to be solved.
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Affiliation(s)
- Brendan Smith
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260-3000, United States of America
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112
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Effect of nitrogen substitution and π-conjugation on photophysical properties and excited state intramolecular proton transfer reactions of methyl salicylate derivatives: Theoretical investigation. J Photochem Photobiol A Chem 2020. [DOI: 10.1016/j.jphotochem.2019.112267] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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113
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Bondanza M, Nottoli M, Cupellini L, Lipparini F, Mennucci B. Polarizable embedding QM/MM: the future gold standard for complex (bio)systems? Phys Chem Chem Phys 2020; 22:14433-14448. [DOI: 10.1039/d0cp02119a] [Citation(s) in RCA: 59] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
We provide a perspective of the induced dipole formulation of polarizable QM/MM, showing how efficient implementations will enable their application to the modeling of dynamics, spectroscopy, and reactivity in complex biosystems.
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Affiliation(s)
- Mattia Bondanza
- Dipartimento di Chimica e Chimica Industriale
- Università di Pisa
- I-56124 Pisa
- Italy
| | - Michele Nottoli
- Dipartimento di Chimica e Chimica Industriale
- Università di Pisa
- I-56124 Pisa
- Italy
| | - Lorenzo Cupellini
- Dipartimento di Chimica e Chimica Industriale
- Università di Pisa
- I-56124 Pisa
- Italy
| | - Filippo Lipparini
- Dipartimento di Chimica e Chimica Industriale
- Università di Pisa
- I-56124 Pisa
- Italy
| | - Benedetta Mennucci
- Dipartimento di Chimica e Chimica Industriale
- Università di Pisa
- I-56124 Pisa
- Italy
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114
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Mai S, González L. Identification of important normal modes in nonadiabatic dynamics simulations by coherence, correlation, and frequency analyses. J Chem Phys 2019; 151:244115. [DOI: 10.1063/1.5129335] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Affiliation(s)
- Sebastian Mai
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
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115
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Peters LM, Kussmann J, Ochsenfeld C. Nonadiabatic Molecular Dynamics on Graphics Processing Units: Performance and Application to Rotary Molecular Motors. J Chem Theory Comput 2019; 15:6647-6659. [PMID: 31763834 PMCID: PMC6909237 DOI: 10.1021/acs.jctc.9b00859] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2019] [Indexed: 11/29/2022]
Abstract
Nonadiabatic molecular dynamics (NAMD) simulations of molecular systems require the efficient evaluation of excited-state properties, such as energies, gradients, and nonadiabatic coupling vectors. Here, we investigate the use of graphics processing units (GPUs) in addition to central processing units (CPUs) to efficiently calculate these properties at the time-dependent density functional theory (TDDFT) level of theory. Our implementation in the FermiONs++ program package uses the J-engine and a preselective screening procedure for the calculation of Coulomb and exchange kernels, respectively. We observe good speed-ups for small and large molecular systems (comparable to those observed in ground-state calculations) and reduced (down to sublinear) scaling behavior with respect to the system size (depending on the spatial locality of the investigated excitation). As a first illustrative application, we present efficient NAMD simulations of a series of newly designed light-driven rotary molecular motors and compare their S1 lifetimes. Although all four rotors show different S1 excitation energies, their ability to rotate upon excitation is conserved, making the series an interesting starting point for rotary molecular motors with tunable excitation energies.
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Affiliation(s)
- Laurens
D. M. Peters
- Chair
of Theoretical Chemistry, Department of Chemistry, University of Munich (LMU), Butenandtstr. 7, D-81377 München, Germany
| | - Jörg Kussmann
- Chair
of Theoretical Chemistry, Department of Chemistry, University of Munich (LMU), Butenandtstr. 7, D-81377 München, Germany
| | - Christian Ochsenfeld
- Chair
of Theoretical Chemistry, Department of Chemistry, University of Munich (LMU), Butenandtstr. 7, D-81377 München, Germany
- Max
Planck Institute for Solid State Research, Heisenbergstr. 1, D-70569 Stuttgart, Germany
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116
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Sukpattanacharoen C, Salaeh R, Promarak V, Escudero D, Kungwan N. Heteroatom substitution effect on electronic structures, photophysical properties, and excited-state intramolecular proton transfer processes of 3-hydroxyflavone and its analogues: A TD-DFT study. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.05.113] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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117
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Vansco MF, Marchetti B, Trongsiriwat N, Bhagde T, Wang G, Walsh PJ, Klippenstein SJ, Lester MI. Synthesis, Electronic Spectroscopy, and Photochemistry of Methacrolein Oxide: A Four-Carbon Unsaturated Criegee Intermediate from Isoprene Ozonolysis. J Am Chem Soc 2019; 141:15058-15069. [PMID: 31446755 DOI: 10.1021/jacs.9b05193] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Ozonolysis of isoprene, one of the most abundant volatile organic compounds in the earth's atmosphere, generates the four-carbon unsaturated methacrolein oxide (MACR-oxide) Criegee intermediate. The first laboratory synthesis and direct detection of MACR-oxide is achieved through reaction of photolytically generated, resonance-stabilized iodoalkene radicals with oxygen. MACR-oxide is characterized on its first π* ← π electronic transition using a ground-state depletion method. MACR-oxide exhibits a broad UV-visible spectrum peaked at 380 nm with weak oscillatory structure at long wavelengths ascribed to vibrational resonances. Complementary theory predicts two strong π* ← π transitions arising from extended conjugation across MACR-oxide with overlapping contributions from its four conformers. Electronic promotion to the 11ππ* state agrees well with experiment, and results in nonadiabatic coupling and prompt release of O 1D products observed as anisotropic velocity-map images. This UV-visible detection scheme will enable study of its unimolecular and bimolecular reactions under thermal conditions of relevance to the atmosphere.
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Affiliation(s)
- Michael F Vansco
- Department of Chemistry , University of Pennsylvania , Philadelphia , Pennsylvania 19104-6323 , United States
| | - Barbara Marchetti
- Department of Chemistry , University of Pennsylvania , Philadelphia , Pennsylvania 19104-6323 , United States
| | - Nisalak Trongsiriwat
- Department of Chemistry , University of Pennsylvania , Philadelphia , Pennsylvania 19104-6323 , United States
| | - Trisha Bhagde
- Department of Chemistry , University of Pennsylvania , Philadelphia , Pennsylvania 19104-6323 , United States
| | - Guanghan Wang
- Department of Chemistry , University of Pennsylvania , Philadelphia , Pennsylvania 19104-6323 , United States
| | - Patrick J Walsh
- Department of Chemistry , University of Pennsylvania , Philadelphia , Pennsylvania 19104-6323 , United States
| | - Stephen J Klippenstein
- Chemical Sciences and Engineering Division , Argonne National Laboratory , Lemont , Illinois 60439 , United States
| | - Marsha I Lester
- Department of Chemistry , University of Pennsylvania , Philadelphia , Pennsylvania 19104-6323 , United States
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118
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Zobel JP, González L. Nonadiabatic Dynamics Simulation Predict Intersystem Crossing in Nitroaromatic Molecules on a Picosecond Time Scale. CHEMPHOTOCHEM 2019; 3:833-845. [PMID: 31681833 PMCID: PMC6813632 DOI: 10.1002/cptc.201900108] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2019] [Revised: 05/06/2019] [Indexed: 12/19/2022]
Abstract
Previous time-resolved spectroscopic experiments and static quantum-chemical calculations attributed nitronaphthalene derivatives one of the fastest time scales for intersystem crossing within organic molecules, reaching the 100 fs mark. Nonadiabatic dynamics simulations on three nitronaphthalene derivatives challenge this view, showing that the experimentally observed ∼100 fs process corresponds to internal conversion in the singlet manifolds. Intersystem crossing, instead, takes place on a longer time scale of ∼1 ps. The dynamics simulations further reveal that the spin transitions occur via two distinct pathways with different contribution for the three systems, which are determined by electronic factors and the torsion of the nitro group. This study, therefore, indicates that the existence of sub-picosecond intersystem crossing in other nitroaromatic molecules should be questioned.
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Affiliation(s)
- J. Patrick Zobel
- Division of Theoretical Chemistry, KemicentrumLund UniversityP.O. Box 124SE-221 00LundSweden
| | - Leticia González
- Institute of Theoretical ChemistryUniversity of ViennaWähringer Straße 17A-1090ViennaAustria
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119
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Kochman MA, Durbeej B. Theoretical Study of Ground- and Excited-State Charge Transfer in Fulvene-Based Donor–Acceptor Systems. J Phys Chem A 2019; 123:6660-6673. [DOI: 10.1021/acs.jpca.9b02962] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Michał Andrzej Kochman
- Division of Theoretical Chemistry, Department of Physics, Chemistry and Biology (IFM), Linköping University, 581 83 Linköping, Sweden
| | - Bo Durbeej
- Division of Theoretical Chemistry, Department of Physics, Chemistry and Biology (IFM), Linköping University, 581 83 Linköping, Sweden
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120
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Wang L, Qiu J, Bai X, Xu J. Surface hopping methods for nonadiabatic dynamics in extended systems. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2019. [DOI: 10.1002/wcms.1435] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Linjun Wang
- Center for Chemistry of Novel & High‐Performance Materials, Department of Chemistry Zhejiang University Hangzhou China
| | - Jing Qiu
- Center for Chemistry of Novel & High‐Performance Materials, Department of Chemistry Zhejiang University Hangzhou China
| | - Xin Bai
- Center for Chemistry of Novel & High‐Performance Materials, Department of Chemistry Zhejiang University Hangzhou China
| | - Jiabo Xu
- Center for Chemistry of Novel & High‐Performance Materials, Department of Chemistry Zhejiang University Hangzhou China
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121
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Daengngern R, Salaeh R, Saelee T, Kerdpol K, Kungwan N. Excited-state intramolecular proton transfer reactions of 2,5-bis(2′-benzoxazolyl)hydroquinone and its water cluster exhibiting single and double proton transfer: A TD-DFT dynamics simulation. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.110889] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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122
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Miao G, Subotnik J. Revisiting the Recoherence Problem in the Fewest Switches Surface Hopping Algorithm. J Phys Chem A 2019; 123:5428-5435. [DOI: 10.1021/acs.jpca.9b03188] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Gaohan Miao
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Joseph Subotnik
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
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123
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Brorsen KR. Reproducing global potential energy surfaces with continuous-filter convolutional neural networks. J Chem Phys 2019; 150:204104. [DOI: 10.1063/1.5093908] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Affiliation(s)
- Kurt R. Brorsen
- Department of Chemistry, University of Missouri, Columbia, Missouri 65203, USA
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124
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Stojanović L, Crespo‐Otero R. Understanding Aggregation Induced Emission in a Propeller‐Shaped Blue Emitter. CHEMPHOTOCHEM 2019. [DOI: 10.1002/cptc.201900075] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Ljiljana Stojanović
- School of Biological and Chemical SciencesQueen Mary University of London Mile End Road London E1 4NS UK
| | - Rachel Crespo‐Otero
- School of Biological and Chemical SciencesQueen Mary University of London Mile End Road London E1 4NS UK
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125
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Horton SL, Liu Y, Forbes R, Makhija V, Lausten R, Stolow A, Hockett P, Marquetand P, Rozgonyi T, Weinacht T. Excited state dynamics of CH 2I 2 and CH 2BrI studied with UV pump VUV probe photoelectron spectroscopy. J Chem Phys 2019; 150:174201. [PMID: 31067867 DOI: 10.1063/1.5086665] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
We compare the excited state dynamics of diiodomethane (CH2I2) and bromoiodomethane (CH2BrI) using time resolved photoelectron spectroscopy. A 4.65 eV UV pump pulse launches a dissociative wave packet on excited states of both molecules and the ensuing dynamics are probed via photoionization using a 7.75 eV probe pulse. The resulting photoelectrons are measured with the velocity map imaging technique for each pump-probe delay. Our measurements highlight differences in the dynamics for the two molecules, which are interpreted with high-level ab initio molecular dynamics (trajectory surface hopping) calculations. Our analysis allows us to associate features in the photoelectron spectrum with different portions of the excited state wave packet represented by different trajectories. The excited state dynamics in bromoiodomethane are simple and can be described in terms of direct dissociation along the C-I coordinate, whereas the dynamics in diiodomethane involve internal conversion and motion along multiple dimensions.
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Affiliation(s)
- Spencer L Horton
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, USA
| | - Yusong Liu
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, USA
| | - Ruaridh Forbes
- Department of Physics, University of Ottawa, 150 Louis Pasteur, Ottawa, Ontario K1N 6N5, Canada
| | - Varun Makhija
- Department of Physics, University of Ottawa, 150 Louis Pasteur, Ottawa, Ontario K1N 6N5, Canada
| | - Rune Lausten
- National Research Council of Canada, 100 Sussex Drive, Ottawa, Ontario K1A 0R6, Canada
| | - Albert Stolow
- Department of Physics, University of Ottawa, 150 Louis Pasteur, Ottawa, Ontario K1N 6N5, Canada
| | - Paul Hockett
- National Research Council of Canada, 100 Sussex Drive, Ottawa, Ontario K1A 0R6, Canada
| | - Philipp Marquetand
- Faculty of Chemistry, Institute of Theoretical Chemistry, University of Vienna, Währinger Str. 17, 1090 Wien, Austria
| | - Tamás Rozgonyi
- Institute of Materials and Environmental Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar Tudósok Körútja 2, Budapest 1117, Hungary
| | - Thomas Weinacht
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, USA
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126
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127
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Mai S, Wolf AP, González L. Curious Case of 2-Selenouracil: Efficient Population of Triplet States and Yet Photostable. J Chem Theory Comput 2019; 15:3730-3742. [DOI: 10.1021/acs.jctc.9b00208] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Sebastian Mai
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| | - Anna-Patricia Wolf
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
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128
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Peng J, Xie Y, Hu D, Lan Z. Performance of trajectory surface hopping method in the treatment of ultrafast intersystem crossing dynamics. J Chem Phys 2019; 150:164126. [PMID: 31042919 DOI: 10.1063/1.5079426] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We carried out extensive studies to examine the performance of the fewest-switches surface hopping method in the description of the ultrafast intersystem crossing dynamic of various singlet-triplet (S-T) models by comparison with the results of the exact full quantum dynamics. Different implementation details and some derivative approaches were examined. As expected, it is better to perform the trajectory surface hopping calculations in the spin-adiabatic representation or by the local diabatization approach, instead of in the spin-diabatic representation. The surface hopping method provides reasonable results for the short-time dynamics in the S-T model with weak spin-orbital coupling (diabatic coupling), although it does not perform well in the models with strong spin-orbital coupling (diabatic coupling). When the system accesses the S-T potential energy crossing with rather high kinetic energy, the trajectory surface hopping method tends to produce a good description of the nonadiabatic intersystem crossing dynamics. The impact of the decoherence correction on the performance of the trajectory surface hopping is system dependent. It improves the result accuracy in many cases, while its influence may also be minor for other cases.
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Affiliation(s)
- Jiawei Peng
- Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety and MOE Key Laboratory of Environmental Theoretical Chemistry, SCNU Environmental Research Institute, South China Normal University, Guangzhou 510006, China
| | - Yu Xie
- Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety and MOE Key Laboratory of Environmental Theoretical Chemistry, SCNU Environmental Research Institute, South China Normal University, Guangzhou 510006, China
| | - Deping Hu
- MOE Key Laboratory of Organic Optoelectronics and Molecular Engineering, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Zhenggang Lan
- Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety and MOE Key Laboratory of Environmental Theoretical Chemistry, SCNU Environmental Research Institute, South China Normal University, Guangzhou 510006, China
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129
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Li Y, Gan Y, Cao Z. Computational insight into excited states of the ring-opening radicals from the pyrolysis of furan biofuels. J Comput Chem 2019; 40:1057-1065. [PMID: 30299565 DOI: 10.1002/jcc.25594] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2018] [Revised: 07/30/2018] [Accepted: 08/17/2018] [Indexed: 12/25/2022]
Abstract
The low-lying valence excited states and Rydberg states of the radical species from the ring-opening reactions in pyrolysis of furan biofuels have been determined by extensive density functional theory and sophisticated wave function theory calculations. The radicals 1-C4 H5 O-2, 2-furylCH2 , and 4-C6 H7 O with the delocalized π-type single electron are predicted to be most stable among the reactive species here for furan, 2-methyfuran, and 2,5-dimethylfuran, respectively. Predicted vertical transition energies by TD-CAM-B3LYP show good agreement with those by CASPT2. Some among the electronic excitations to low-lying states can take place in the visible light region, and they may be involved in the combustion process. Further surface hopping dynamics simulations on the excited states of the most stable ring-opening radical 1-C4 H5 O-2 of furan as an example reveal that 89.9% sampling trajectories at the initial excited state of 22 A"(π1 π*2 ) decay to the 12 A'(n1 π*2 ) state within an average of 384 fs, and then 81.2% trajectories at the 12 A' state go to the ground state within an average of 114 fs. At the end of the simulation for 1000 fs, 18.8% trajectories still stay on the excited states of 22 A" and 12 A', suggesting that the reactive radicals in the ground state are mainly responsible for the combustion chemistry of furan biofuels. © 2018 Wiley Periodicals, Inc.
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Affiliation(s)
- Yuanyuan Li
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Yanzhen Gan
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Zexing Cao
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
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130
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Miao G, Bellonzi N, Subotnik J. An extension of the fewest switches surface hopping algorithm to complex Hamiltonians and photophysics in magnetic fields: Berry curvature and “magnetic” forces. J Chem Phys 2019; 150:124101. [DOI: 10.1063/1.5088770] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Gaohan Miao
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Nicole Bellonzi
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Joseph Subotnik
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
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131
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Zheng Q, Chu W, Zhao C, Zhang L, Guo H, Wang Y, Jiang X, Zhao J. Ab initio nonadiabatic molecular dynamics investigations on the excited carriers in condensed matter systems. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2019. [DOI: 10.1002/wcms.1411] [Citation(s) in RCA: 87] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Qijing Zheng
- ICQD/Hefei National Laboratory for Physical Sciences at Microscale, and Key Laboratory of Strongly‐Coupled Quantum Matter Physics, Chinese Academy of Sciences, and Department of Physics University of Science and Technology of China Hefei China
| | - Weibin Chu
- ICQD/Hefei National Laboratory for Physical Sciences at Microscale, and Key Laboratory of Strongly‐Coupled Quantum Matter Physics, Chinese Academy of Sciences, and Department of Physics University of Science and Technology of China Hefei China
| | - Chuanyu Zhao
- ICQD/Hefei National Laboratory for Physical Sciences at Microscale, and Key Laboratory of Strongly‐Coupled Quantum Matter Physics, Chinese Academy of Sciences, and Department of Physics University of Science and Technology of China Hefei China
| | - Lili Zhang
- ICQD/Hefei National Laboratory for Physical Sciences at Microscale, and Key Laboratory of Strongly‐Coupled Quantum Matter Physics, Chinese Academy of Sciences, and Department of Physics University of Science and Technology of China Hefei China
| | - Hongli Guo
- ICQD/Hefei National Laboratory for Physical Sciences at Microscale, and Key Laboratory of Strongly‐Coupled Quantum Matter Physics, Chinese Academy of Sciences, and Department of Physics University of Science and Technology of China Hefei China
- School of Physics and Technology, Center for Nanoscience and Nanotechnology, and Key Laboratory of Artificial Micro‐ and Nano‐structures of Ministry of Education Wuhan University Wuhan China
| | - Yanan Wang
- ICQD/Hefei National Laboratory for Physical Sciences at Microscale, and Key Laboratory of Strongly‐Coupled Quantum Matter Physics, Chinese Academy of Sciences, and Department of Physics University of Science and Technology of China Hefei China
| | - Xiang Jiang
- ICQD/Hefei National Laboratory for Physical Sciences at Microscale, and Key Laboratory of Strongly‐Coupled Quantum Matter Physics, Chinese Academy of Sciences, and Department of Physics University of Science and Technology of China Hefei China
| | - Jin Zhao
- ICQD/Hefei National Laboratory for Physical Sciences at Microscale, and Key Laboratory of Strongly‐Coupled Quantum Matter Physics, Chinese Academy of Sciences, and Department of Physics University of Science and Technology of China Hefei China
- Department of Physics and Astronomy University of Pittsburgh Pittsburgh Pennsylvania
- Synergetic Innovation Center of Quantum Information & Quantum Physics University of Science and Technology of China Hefei China
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132
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Yang Y, Li D, Li C, Liu Y, Jiang K. Asymmetric substitution changes the UV-induced nonradiative decay pathway and the spectra behaviors of β-diketones. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 207:209-215. [PMID: 30240982 DOI: 10.1016/j.saa.2018.09.026] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Revised: 09/13/2018] [Accepted: 09/14/2018] [Indexed: 06/08/2023]
Abstract
Asymmetric substitution has not been termed as an essential factor in studying photo-induced ultrafast dynamics of molecular system. Asymmetric 4-hydroxybut-3-en-2-one (HEO), together with symmetric malonaldehyde (MA) and acetylacetone (AA), have been provided as target sample to study the nonradiative decay (ND) processes of β-diketones. An effective ND pathway of the three molecules is presented that their excited second (S2) states transfer to first (S1) state by nonadiabatic surface hopping, and then transfer to triplet (T1) state by crossing minimum energy crossing point (MECP), after which decay to ground (S0) state through MECP. More importantly, the asymmetric substitution of HEO induces the proton transfer in the S1 state and generates a proton-transferred conformer with lowest energy, which does not occur for MA and AA. This change exploits a new ND pathway that the S1 state decays to the proton transferred T1 state and then undergoes reverse proton transfer to S0 state through the MECPs between the three states. The two pathways of HEO give detailed energy and geometric information on surface hopping of S2/S1 and MECPs of S1/T1/S0, and interpret the reason of the ND pathway while not spectra emission. This result is significantly different from the previous reported ND pathway of photoisomerization or conical intersection between different states. This work shows that asymmetric substitution changes the molecular structure and then changes their spectra behaviors.
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Affiliation(s)
- Yonggang Yang
- College of Physics and Materials Science, Henan Normal University, Xinxiang 453007, China
| | - Donglin Li
- College of Physics and Materials Science, Henan Normal University, Xinxiang 453007, China
| | - Chaozheng Li
- College of Physics and Materials Science, Henan Normal University, Xinxiang 453007, China
| | - Yufang Liu
- College of Physics and Materials Science, Henan Normal University, Xinxiang 453007, China.
| | - Kai Jiang
- School of Environment, Henan Normal University, Xinxiang 453007, China
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133
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Vansco MF, Marchetti B, Lester MI. Electronic spectroscopy of methyl vinyl ketone oxide: A four-carbon unsaturated Criegee intermediate from isoprene ozonolysis. J Chem Phys 2019; 149:244309. [PMID: 30599734 DOI: 10.1063/1.5064716] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Ozonolysis of isoprene, one of the most abundant volatile organic compounds in the atmosphere, proceeds through methyl vinyl ketone oxide (MVK-oxide), methacrolein oxide, and formaldehyde oxide (CH2OO) Criegee intermediates. The present study focuses on MVK-oxide, a four-carbon unsaturated carbonyl oxide intermediate, using vacuum ultraviolet photoionization at 118 nm and UV-visible induced depletion of the m/z = 86 mass channel to characterize its first π* ← π electronic transition. The electronic spectrum is broad and unstructured with its peak at 388 nm (3.2 eV). The MVK-oxide spectrum is shifted to a significantly longer wavelength than CH2OO and alkyl-substituted Criegee intermediates studied previously due to extended conjugation across the vinyl and carbonyl oxide groups. Electronic excitation results in rapid dissociation at λ ≤ 430 nm to methyl vinyl ketone and O 1D products, the latter detected by 2 + 1 resonance enhanced multiphoton ionization using velocity map imaging. Complementary electronic structure calculations (CASPT2(12,10)/AVDZ) predict two π* ← π transitions with significant oscillator strength for each of the four conformers of MVK-oxide with vertical excitation energies (and corresponding wavelengths) in the 3.1-3.6 eV (350-400 nm) and 4.5-5.5 eV (220-280 nm) regions. The computed electronic absorption profile of MVK-oxide, based on a Wigner distribution of ground state configurations and summed over the four conformers, is predicted to peak at 397 nm. UV-visible spectroscopy on the first π* ← π transition is shown by a combination of experiment and theory to provide a sensitive method for detection of the MVK-oxide Criegee intermediate that will enable further studies of its photochemistry and unimolecular and bimolecular reaction dynamics.
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Affiliation(s)
- Michael F Vansco
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, USA
| | - Barbara Marchetti
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, USA
| | - Marsha I Lester
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, USA
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134
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Hanasaki K, Kanno M, Niehaus TA, Kono H. An efficient approximate algorithm for nonadiabatic molecular dynamics. J Chem Phys 2019; 149:244117. [PMID: 30599729 DOI: 10.1063/1.5046757] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
We propose a modification to the nonadiabatic surface hopping calculation method formulated in a paper by Yu et al. [Phys. Chem. Chem. Phys. 16, 25883 (2014)], which is a multidimensional extension of the Zhu-Nakamura theory with a practical diabatic gradient estimation algorithm. In our modification, their diabatic gradient estimation algorithm, which is based on a simple interpolation of the adiabatic potential energy surfaces, is replaced by an algorithm using the numerical derivatives of the adiabatic gradients. We then apply the algorithm to several models of nonadiabatic dynamics, both analytic and ab initio models, to numerically demonstrate that our method indeed widens the applicability and robustness of their method. We also discuss the validity and limitations of our new nonadiabatic surface hopping method while considering in mind potential applications to excited-state dynamics of biomolecules or unconventional nonadiabatic dynamics such as radiation decay processes in ultraintense X-ray fields.
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Affiliation(s)
- Kota Hanasaki
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Manabu Kanno
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Thomas A Niehaus
- University of Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, F-69622, Villeubanne, France
| | - Hirohiko Kono
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
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135
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Prommin C, Kerdpol K, Saelee T, Kungwan N. Effects of π-expansion, an additional hydroxyl group, and substitution on the excited state single and double proton transfer of 2-hydroxybenzaldehyde and its relative compounds: TD-DFT static and dynamic study. NEW J CHEM 2019. [DOI: 10.1039/c9nj05055h] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The effects of π-expansion, an extra hydroxyl group, and substituents on the photophysical properties, the excited state single proton transfer and the double proton transfer of 2-hydroxybenzaldehyde and its relatives have been theoretically investigated using TD-DFT.
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Affiliation(s)
- Chanatkran Prommin
- Department of Chemistry
- Faculty of Science
- Chiang Mai University
- Chiang Mai 50200
- Thailand
| | - Khanittha Kerdpol
- Department of Chemistry
- Faculty of Science
- Chiang Mai University
- Chiang Mai 50200
- Thailand
| | - Tinnakorn Saelee
- Department of Chemistry
- Faculty of Science
- Chiang Mai University
- Chiang Mai 50200
- Thailand
| | - Nawee Kungwan
- Department of Chemistry
- Faculty of Science
- Chiang Mai University
- Chiang Mai 50200
- Thailand
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136
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Sitkiewicz SP, Rivero D, Oliva-Enrich JM, Saiz-Lopez A, Roca-Sanjuán D. Ab initio quantum-chemical computations of the absorption cross sections of HgX2 and HgXY (X, Y = Cl, Br, and I): molecules of interest in the Earth's atmosphere. Phys Chem Chem Phys 2019; 21:455-467. [DOI: 10.1039/c8cp06160b] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The electronic-structure properties of the low-lying electronic states and the absorption cross sections of mercury halides have been determined within the UV-vis spectrum range (170 nm ≤ λphoton ≤ 600 nm).
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Affiliation(s)
- Sebastian P. Sitkiewicz
- Kimika Fakultatea
- Euskal Herriko Unibertsitatea UPV/EHU and Donostia International Physics Center (DIPC)
- 20080 Donostia
- Spain
| | - Daniel Rivero
- Department of Atmospheric Chemistry and Climate
- Institute of Physical Chemistry Rocasolano
- CSIC
- 28006 Madrid
- Spain
| | - Josep M. Oliva-Enrich
- Department of Atmospheric Chemistry and Climate
- Institute of Physical Chemistry Rocasolano
- CSIC
- 28006 Madrid
- Spain
| | - Alfonso Saiz-Lopez
- Department of Atmospheric Chemistry and Climate
- Institute of Physical Chemistry Rocasolano
- CSIC
- 28006 Madrid
- Spain
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137
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Zobel JP, Nogueira JJ, González L. Finite-temperature Wigner phase-space sampling and temperature effects on the excited-state dynamics of 2-nitronaphthalene. Phys Chem Chem Phys 2019; 21:13906-13915. [DOI: 10.1039/c8cp03273d] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The concept of finite temperature Wigner phase-space sampling allowing the population of vibrationally excited states is introduced and employed to study temperature effects on the absorption spectrum of 2-nitronaphtalene (2NN) and its relaxation dynamics.
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Affiliation(s)
- J. Patrick Zobel
- Institute of Theoretical Chemistry
- University of Vienna
- A-1090 Vienna
- Austria
| | - Juan J. Nogueira
- Institute of Theoretical Chemistry
- University of Vienna
- A-1090 Vienna
- Austria
| | - Leticia González
- Institute of Theoretical Chemistry
- University of Vienna
- A-1090 Vienna
- Austria
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138
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Li X, Hu D, Xie Y, Lan Z. Analysis of trajectory similarity and configuration similarity in on-the-fly surface-hopping simulation on multi-channel nonadiabatic photoisomerization dynamics. J Chem Phys 2018; 149:244104. [DOI: 10.1063/1.5048049] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Affiliation(s)
- Xusong Li
- CAS Key Laboratory of Biobased Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China
- Sino-Danish Center for Education and Research/Sino-Danish College, University of Chinese Academy of Sciences, Beijing 100049, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Deping Hu
- CAS Key Laboratory of Biobased Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yu Xie
- The Environmental Research Institute, MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
| | - Zhenggang Lan
- CAS Key Laboratory of Biobased Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China
- Sino-Danish Center for Education and Research/Sino-Danish College, University of Chinese Academy of Sciences, Beijing 100049, China
- The Environmental Research Institute, MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
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139
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Preiss J, Kage D, Hoffmann K, Martínez TJ, Resch-Genger U, Presselt M. Ab Initio Prediction of Fluorescence Lifetimes Involving Solvent Environments by Means of COSMO and Vibrational Broadening. J Phys Chem A 2018; 122:9813-9820. [PMID: 30507127 DOI: 10.1021/acs.jpca.8b08886] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The fluorescence lifetime is a key property of fluorophores that can be utilized for microenvironment probing, analyte sensing, and multiplexing as well as barcoding applications. For the rational design of lifetime probes and barcodes, theoretical methods have been developed to enable the ab initio prediction of this parameter, which depends strongly on interactions with solvent molecules and other chemical species in the emitteŕs immediate environment. In this work, we investigate how a conductor-like screening model (COSMO) can account for variations in fluorescence lifetimes that are caused by such fluorophore-solvent interactions. Therefore, we calculate vibrationally broadened fluorescence spectra using the nuclear ensemble method to obtain distorted molecular geometries to sample the electronic transitions with time-dependent density functional theory (TDDFT). The influence of the solvent on fluorescence lifetimes is accounted for with COSMO. For example, for 4-hydroxythiazole fluorophore containing different heteroatoms and acidic and basic moieties in aprotic and protic solvents of varying polarity, this approach was compared to experimentally determined lifetimes in the same solvents. Our results demonstrate a good correlation between theoretically predicted and experimentally measured fluorescence lifetimes except for the polar solvents ethanol and acetonitrile that can specifically interact with the heteroatoms and the carboxylic acid of the thiazole derivative.
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Affiliation(s)
- Julia Preiss
- Institute of Physical Chemistry , Friedrich Schiller University Jena , Helmholtzweg 4 , 07743 Jena , Germany.,Leibniz Institute of Photonic Technology (IPHT) , Albert-Einstein-Strasse 9 , 07745 Jena , Germany
| | - Daniel Kage
- Bundesanstalt für Materialforschung und-prüfung (BAM), Richard-Willstätter-Strasse 11 , 12489 Berlin , Germany.,Department of Physics , Humboldt-Universität zu Berlin , Newtonstrasse 15 , 12489 Berlin , Germany
| | - Katrin Hoffmann
- Bundesanstalt für Materialforschung und-prüfung (BAM), Richard-Willstätter-Strasse 11 , 12489 Berlin , Germany
| | - Todd J Martínez
- SLAC National Accelerator Laboratory , Menlo Park , California 94309 , United States.,Department of Chemistry and PULSE Institute , Stanford University , Stanford , California 94305 , United States
| | - Ute Resch-Genger
- Bundesanstalt für Materialforschung und-prüfung (BAM), Richard-Willstätter-Strasse 11 , 12489 Berlin , Germany
| | - Martin Presselt
- Institute of Physical Chemistry , Friedrich Schiller University Jena , Helmholtzweg 4 , 07743 Jena , Germany.,Leibniz Institute of Photonic Technology (IPHT) , Albert-Einstein-Strasse 9 , 07745 Jena , Germany.,Center for Energy and Environmental Chemistry Jena (CEEC Jena) , Friedrich Schiller University Jena , Philosophenweg 7a , 07743 Jena , Germany.,Sciclus GmbH & Co. KG, Moritz-von-Rohr-Strasse 1a , 07745 Jena , Germany
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140
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Dsouza R, Cheng X, Li Z, Miller RJD, Kochman MA. Oscillatory Photoelectron Signal of N-Methylmorpholine as a Test Case for the Algebraic-Diagrammatic Construction Method of Second Order. J Phys Chem A 2018; 122:9688-9700. [DOI: 10.1021/acs.jpca.8b10241] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Raison Dsouza
- Max Planck Institute for the Structure and Dynamics of Matter, Bldg. 99 (CFEL), Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Xinxin Cheng
- Max Planck Institute for the Structure and Dynamics of Matter, Bldg. 99 (CFEL), Luruper Chaussee 149, 22761 Hamburg, Germany
- Hamburg Centre for Ultrafast Imaging (CUI), Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Zheng Li
- Max Planck Institute for the Structure and Dynamics of Matter, Bldg. 99 (CFEL), Luruper Chaussee 149, 22761 Hamburg, Germany
| | - R. J. Dwayne Miller
- Max Planck Institute for the Structure and Dynamics of Matter, Bldg. 99 (CFEL), Luruper Chaussee 149, 22761 Hamburg, Germany
- Hamburg Centre for Ultrafast Imaging (CUI), Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
- Department of Chemistry and Physics, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - Michał Andrzej Kochman
- Department of Physics, Chemistry and Biology (IFM), Linköping University, 581 83 Linköping, Sweden
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141
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Photoreduction of gaseous oxidized mercury changes global atmospheric mercury speciation, transport and deposition. Nat Commun 2018; 9:4796. [PMID: 30442890 PMCID: PMC6237998 DOI: 10.1038/s41467-018-07075-3] [Citation(s) in RCA: 66] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Accepted: 10/11/2018] [Indexed: 11/15/2022] Open
Abstract
Anthropogenic mercury (Hg(0)) emissions oxidize to gaseous Hg(II) compounds, before deposition to Earth surface ecosystems. Atmospheric reduction of Hg(II) competes with deposition, thereby modifying the magnitude and pattern of Hg deposition. Global Hg models have postulated that Hg(II) reduction in the atmosphere occurs through aqueous-phase photoreduction that may take place in clouds. Here we report that experimental rainfall Hg(II) photoreduction rates are much slower than modelled rates. We compute absorption cross sections of Hg(II) compounds and show that fast gas-phase Hg(II) photolysis can dominate atmospheric mercury reduction and lead to a substantial increase in the modelled, global atmospheric Hg lifetime by a factor two. Models with Hg(II) photolysis show enhanced Hg(0) deposition to land, which may prolong recovery of aquatic ecosystems long after Hg emissions are lowered, due to the longer residence time of Hg in soils compared with the ocean. Fast Hg(II) photolysis substantially changes atmospheric Hg dynamics and requires further assessment at regional and local scales. Reduction of gaseous Hg(II) compounds drives atmospheric mercury wet and dry deposition to Earth surface ecosystems. Global Hg models assume this reduction takes place in clouds. Here the authors report a new gas-phase Hg photochemical mechanism that changes atmospheric mercury lifetime and its deposition to the surface.
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142
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Xie Y, Zheng J, Lan Z. Performance evaluation of the symmetrical quasi-classical dynamics method based on Meyer-Miller mapping Hamiltonian in the treatment of site-exciton models. J Chem Phys 2018; 149:174105. [DOI: 10.1063/1.5047002] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Yu Xie
- Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, Shandong, China
- The Environmental Research Institute; MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
| | - Jie Zheng
- Industrial Research Institute of Nonwovens and Technical Textiles, College of Textiles and Clothing, Qingdao University, Qingdao 266071, China
| | - Zhenggang Lan
- Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, Shandong, China
- The Environmental Research Institute; MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
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143
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Mai S, Mohamadzade A, Marquetand P, González L, Ullrich S. Simulated and Experimental Time-Resolved Photoelectron Spectra of the Intersystem Crossing Dynamics in 2-Thiouracil. Molecules 2018; 23:E2836. [PMID: 30388739 PMCID: PMC6278540 DOI: 10.3390/molecules23112836] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Revised: 10/25/2018] [Accepted: 10/26/2018] [Indexed: 11/16/2022] Open
Abstract
We report time-dependent photoelectron spectra recorded with a single-photon ionization setup and extensive simulations of the same spectra for the excited-state dynamics of 2-thiouracil (2TU) in the gas phase. We find that single-photon ionization produces very similar results as two-photon ionization, showing that the probe process does not have a strong influence on the measured dynamics. The good agreement between the single-photon ionization experiments and the simulations shows that the norms of Dyson orbitals allow for qualitatively describing the ionization probabilities of 2TU. This reasonable performance of Dyson norms is attributed to the particular electronic structure of 2TU, where all important neutral and ionic states involve similar orbital transitions and thus the shape of the Dyson orbitals do not strongly depend on the initial neutral and final ionic state. We argue that similar situations should also occur in other biologically relevant thio-nucleobases, and that the time-resolved photoelectron spectra of these bases could therefore be adequately modeled with the techniques employed here.
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Affiliation(s)
- Sebastian Mai
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria.
| | - Abed Mohamadzade
- Department of Physics and Astronomy, University of Georgia, Athens, GA 30602, USA.
| | - Philipp Marquetand
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria.
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria.
| | - Susanne Ullrich
- Department of Physics and Astronomy, University of Georgia, Athens, GA 30602, USA.
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144
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Tuna D, Spörkel L, Barbatti M, Thiel W. Nonadiabatic dynamics simulations of photoexcited urocanic acid. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.09.036] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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145
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146
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Mai S, Marquetand P, González L. Nonadiabatic dynamics: The SHARC approach. WILEY INTERDISCIPLINARY REVIEWS. COMPUTATIONAL MOLECULAR SCIENCE 2018; 8:e1370. [PMID: 30450129 PMCID: PMC6220962 DOI: 10.1002/wcms.1370] [Citation(s) in RCA: 274] [Impact Index Per Article: 39.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Revised: 04/05/2018] [Accepted: 04/06/2018] [Indexed: 12/12/2022]
Abstract
We review the Surface Hopping including ARbitrary Couplings (SHARC) approach for excited-state nonadiabatic dynamics simulations. As a generalization of the popular surface hopping method, SHARC allows simulating the full-dimensional dynamics of molecules including any type of coupling terms beyond nonadiabatic couplings. Examples of these arbitrary couplings include spin-orbit couplings or dipole moment-laser field couplings, such that SHARC can describe ultrafast internal conversion, intersystem crossing, and radiative processes. The key step of the SHARC approach consists of a diagonalization of the Hamiltonian including these couplings, such that the nuclear dynamics is carried out on potential energy surfaces including the effects of the couplings-this is critical in any applications considering, for example, transition metal complexes or strong laser fields. We also give an overview over the new SHARC2.0 dynamics software package, released under the GNU General Public License, which implements the SHARC approach and several analysis tools. The review closes with a brief survey of applications where SHARC was employed to study the nonadiabatic dynamics of a wide range of molecular systems. This article is categorized under: Theoretical and Physical Chemistry > Reaction Dynamics and KineticsSoftware > Simulation MethodsSoftware > Quantum Chemistry.
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Affiliation(s)
- Sebastian Mai
- Institute of Theoretical Chemistry, Faculty of Chemistry University of Vienna Vienna Austria
| | - Philipp Marquetand
- Institute of Theoretical Chemistry, Faculty of Chemistry University of Vienna Vienna Austria
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry University of Vienna Vienna Austria
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147
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Torres A, Prado LR, Bortolini G, Rego LGC. Charge Transfer Driven Structural Relaxation in a Push-Pull Azobenzene Dye-Semiconductor Complex. J Phys Chem Lett 2018; 9:5926-5933. [PMID: 30257563 DOI: 10.1021/acs.jpclett.8b02490] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Photoexcited structural dynamics in azo-compounds may differ fundamentally whether the push-pull photochromic azo-compound is isolated or forms a heterogeneous charge transfer complex, due to a sudden oxidation of the chromophore. Herein, we use a quantum-classical self-consistent approach that incorporates nonadiabatic excited-state electronic quantum dynamics into molecular mechanics to study the photoexcited dynamics of the push-pull azo-compound para-Methyl Red in the gas phase and sensitizing the (101) anatase surface of TiO2. We find that the photoinduced S2/S0 trans-to- cis isomerization of para-Methyl Red in the gas phase occurs through a pedal-like torsion around the ϕCNNC dihedral angle, without evidence to support the inversion mechanism, likewise in the parent azobenzene molecule. However, the photoexcited structural relaxation of the charge transfer complex para-Methyl Red/TiO2 contrasts essentially with the isolated azo-compounds. Immediately after photoexcitation, the excited electron flows into the TiO2 conduction band, with an injection time constant of ≃5 fs, and no indication of isomerization is observed during the 1.5 ps simulations. Instead, a strong vibronic relaxation occurs that excites the NN stretching mode of the azo-group, which is ultimately ascribed to the NA relaxation, and delocalization, of the hole wavepacket.
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Affiliation(s)
- Alberto Torres
- Department of Physics , Universidade Federal de Santa Catarina , Florianópolis , SC 88040-900 , Brazil
| | - Luciano R Prado
- Department of Physics , Universidade Federal de Santa Catarina , Florianópolis , SC 88040-900 , Brazil
| | - Graziele Bortolini
- Department of Physics , Universidade Federal de Santa Catarina , Florianópolis , SC 88040-900 , Brazil
| | - Luis G C Rego
- Department of Physics , Universidade Federal de Santa Catarina , Florianópolis , SC 88040-900 , Brazil
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148
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Rauta AK, Maiti B. Trajectory surface hopping study of propane photodissociation dynamics at 157 nm. J Chem Phys 2018; 149:044308. [PMID: 30068164 DOI: 10.1063/1.5037676] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The photodissociation dynamics of propane molecules has been studied using the quasiclassical trajectory surface hopping (TSH) method in conjunction with Tully's fewest switches algorithm. The trajectories are propagated on potential energy surfaces computed on-the-fly using the multiconfiguration and multireference ab initio method starting in the lowest excited singlet state (HOMO → 3s Rydberg state) of propane at 157 nm with the emphasis on the site specificity of atomic hydrogen elimination, molecular hydrogen elimination, and their product branching ratios. Our dynamics simulation revealed that there are three primary dissociation channels: the atomic hydrogen elimination, the molecular hydrogen elimination, and the C-C bond scission. The trajectories indicate that the H2 elimination from the internal carbon atom (2,2-H2 elimination) and terminal carbon atom (1,1-H2 elimination) is the major process and follows a three centred synchronous concerted mechanism. 1,2-H2 and 1,3-H2 eliminations on the other hand are minor processes and exclusively follow the roaming mediated nonadiabatic dynamics. The probability of elimination of the hydrogen atom from two terminal groups (terminal hydrogen elimination) is greater than that from the internal CH2 group (internal hydrogen elimination). Almost 83% of atomic hydrogen elimination occurs through the asynchronous concerted mechanism from the terminal carbon atom via triple dissociation leading to CH3 + C2H4 + H products. This finding is in good agreement with a recent experimental observation. The present TSH study indicates that approximately one-third of the trajectories those resulted in a triple dissociation channel, CH3 + C2H4 + H completed in the ground singlet state following a nonadiabatic path (hopping from the first excited singlet S1 to the ground state S0) via the C-C and C-H dissociation coordinate conical intersection S1/S0. The products CH3(1 2A2″) + C2H4(1Ag) + H, obtained are ground state methyl radicals and ground state ethylene. The trajectories those ended in a triple dissociation channel CH3 + C2H4 + H adiabatically in the S1 state lead to CH3(1 2A2″) + C2H4 (1 3B1) + H, where singlet methyl radicals and triplet ethylene are formed in their corresponding lowest electronic state via a spin conserving route. Two channels, CH4 + CH3CH and C2H6 + CH2, are found to have minor contributions. In the case of methane elimination, the trajectories that follow an adiabatic path lead to CH3CH(1 1A″) + CH4,(1 1A1), where ethylidene is in the excited state and methane is in the ground state. Methane elimination via nonadiabatic path leads to CH3CH(11A') + CH4(1 1A1), where both ethylidene and methane are in the ground electronic state. Ethane eliminations follow the adiabatic path leading to C2H6(1 1A1g) + CH2(1 1B1) where ethane is in the ground state and methylene is in the first excited state.
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Affiliation(s)
- Akshaya Kumar Rauta
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Biswajit Maiti
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
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149
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Filatov M, Min SK, Kim KS. Direct Nonadiabatic Dynamics by Mixed Quantum-Classical Formalism Connected with Ensemble Density Functional Theory Method: Application to trans-Penta-2,4-dieniminium Cation. J Chem Theory Comput 2018; 14:4499-4512. [DOI: 10.1021/acs.jctc.8b00217] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Michael Filatov
- Department of Chemistry, School of Natural Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Korea
| | - Seung Kyu Min
- Department of Chemistry, School of Natural Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Korea
| | - Kwang S. Kim
- Department of Chemistry, School of Natural Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Korea
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150
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Mai S, Plasser F, Pabst M, Neese F, Köhn A, González L. Surface hopping dynamics including intersystem crossing using the algebraic diagrammatic construction method. J Chem Phys 2018; 147:184109. [PMID: 29141436 DOI: 10.1063/1.4999687] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
We report an implementation for employing the algebraic diagrammatic construction to second order [ADC(2)] ab initio electronic structure level of theory in nonadiabatic dynamics simulations in the framework of the SHARC (surface hopping including arbitrary couplings) dynamics method. The implementation is intended to enable computationally efficient, reliable, and easy-to-use nonadiabatic dynamics simulations of intersystem crossing in organic molecules. The methodology is evaluated for the 2-thiouracil molecule. It is shown that ADC(2) yields reliable excited-state energies, wave functions, and spin-orbit coupling terms for this molecule. Dynamics simulations are compared to previously reported results using high-level multi-state complete active space perturbation theory, showing favorable agreement.
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Affiliation(s)
- Sebastian Mai
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
| | - Felix Plasser
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
| | - Mathias Pabst
- Institute of Physical Chemistry, University of Mainz, Duesbergweg 10, D-55099 Mainz, Germany
| | - Frank Neese
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Andreas Köhn
- Institute of Physical Chemistry, University of Mainz, Duesbergweg 10, D-55099 Mainz, Germany
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
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