• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5056070)   Today's Articles (1290)
For: Simmonds P, Tuplin A, Evans DJ. Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: Implications for virus evolution and host persistence. RNA 2004;10:1337-51. [PMID: 15273323 PMCID: PMC1370621 DOI: 10.1261/rna.7640104] [Citation(s) in RCA: 157] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2004] [Accepted: 06/01/2004] [Indexed: 05/20/2023]
Number Cited by Other Article(s)
101
Semegni JY, Wamalwa M, Gaujoux R, Harkins GW, Gray A, Martin DP. NASP: a parallel program for identifying evolutionarily conserved nucleic acid secondary structures from nucleotide sequence alignments. ACTA ACUST UNITED AC 2011;27:2443-5. [PMID: 21757466 DOI: 10.1093/bioinformatics/btr417] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
102
Characterization of a canine homolog of hepatitis C virus. Proc Natl Acad Sci U S A 2011;108:11608-13. [PMID: 21610165 DOI: 10.1073/pnas.1101794108] [Citation(s) in RCA: 217] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
103
Li H, Hughes AL, Bano N, McArdle S, Livingston S, Deubner H, McMahon BJ, Townshend-Bulson L, McMahan R, Rosen HR, Gretch DR. Genetic diversity of near genome-wide hepatitis C virus sequences during chronic infection: evidence for protein structural conservation over time. PLoS One 2011;6:e19562. [PMID: 21573177 PMCID: PMC3088699 DOI: 10.1371/journal.pone.0019562] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2010] [Accepted: 04/09/2011] [Indexed: 01/06/2023]  Open
104
RNA structural domains in noncoding regions of the foot-and-mouth disease virus genome trigger innate immunity in porcine cells and mice. J Virol 2011;85:6492-501. [PMID: 21525336 DOI: 10.1128/jvi.00599-11] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
105
Churkin A, Cohen M, Shemer-Avni Y, Barash D. Bioinformatic analysis of the neutrality of RNA secondary structure elements across genotypes reveals evidence for direct evolution of genetic robustness in HCV. J Bioinform Comput Biol 2011;8:1013-26. [PMID: 21121024 DOI: 10.1142/s0219720010005087] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2010] [Revised: 08/18/2010] [Accepted: 08/18/2010] [Indexed: 01/11/2023]
106
Sola I, Mateos-Gomez PA, Almazan F, Zuñiga S, Enjuanes L. RNA-RNA and RNA-protein interactions in coronavirus replication and transcription. RNA Biol 2011;8:237-48. [PMID: 21378501 PMCID: PMC3230552 DOI: 10.4161/rna.8.2.14991] [Citation(s) in RCA: 110] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2010] [Revised: 01/17/2011] [Accepted: 01/19/2011] [Indexed: 02/07/2023]  Open
107
Siu RWC, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A. Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs. J Virol 2011;85:2907-17. [PMID: 21191029 PMCID: PMC3067965 DOI: 10.1128/jvi.02052-10] [Citation(s) in RCA: 94] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2010] [Accepted: 12/20/2010] [Indexed: 11/20/2022]  Open
108
Nasheri N, Singaravelu R, Goodmurphy M, Lyn RK, Pezacki JP. Competing roles of microRNA-122 recognition elements in hepatitis C virus RNA. Virology 2010;410:336-44. [PMID: 21185047 DOI: 10.1016/j.virol.2010.11.015] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2010] [Revised: 09/20/2010] [Accepted: 11/16/2010] [Indexed: 12/12/2022]
109
Sanjuán R, Bordería AV. Interplay between RNA structure and protein evolution in HIV-1. Mol Biol Evol 2010;28:1333-8. [PMID: 21135148 DOI: 10.1093/molbev/msq329] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
110
Gultyaev AP, Fouchier RAM, Olsthoorn RCL. Influenza virus RNA structure: unique and common features. Int Rev Immunol 2010;29:533-56. [PMID: 20923332 DOI: 10.3109/08830185.2010.507828] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
111
Zhang X, Fan X, Xu Y, Di Bisceglie AM. Enhanced protocol for determining the 3' terminus of hepatitis C virus. J Virol Methods 2010;167:158-64. [PMID: 20381536 PMCID: PMC2916046 DOI: 10.1016/j.jviromet.2010.03.030] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2010] [Revised: 03/27/2010] [Accepted: 03/30/2010] [Indexed: 11/22/2022]
112
Fan X, Di Bisceglie AM. RT-PCR amplification and cloning of large viral sequences. Methods Mol Biol 2010;630:139-49. [PMID: 20300996 DOI: 10.1007/978-1-60761-629-0_10] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
113
Sagan SM, Nasheri N, Luebbert C, Pezacki JP. The Efficacy of siRNAs against Hepatitis C Virus Is Strongly Influenced by Structure and Target Site Accessibility. ACTA ACUST UNITED AC 2010;17:515-27. [DOI: 10.1016/j.chembiol.2010.04.011] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2010] [Revised: 03/31/2010] [Accepted: 04/12/2010] [Indexed: 02/05/2023]
114
Genomic features and evolutionary constraints in Saffold-like cardioviruses. J Gen Virol 2010;91:1418-27. [DOI: 10.1099/vir.0.018887-0] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
115
González-Candelas F, López-Labrador FX. Clinical relevance of genetic heterogeneity in HCV. Future Virol 2010. [DOI: 10.2217/fvl.09.63] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
116
Holmes EC. The Evolutionary Genetics of Emerging Viruses. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2009. [DOI: 10.1146/annurev.ecolsys.110308.120248] [Citation(s) in RCA: 143] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
117
Ilyinskii PO, Schmidt T, Lukashev D, Meriin AB, Thoidis G, Frishman D, Shneider AM. Importance of mRNA secondary structural elements for the expression of influenza virus genes. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 2009;13:421-30. [PMID: 19594376 DOI: 10.1089/omi.2009.0036] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
118
Natural insertions within the N-terminal region of the coat protein of Maize dwarf mosaic potyvirus (MDMV) have an effect on the RNA stability. Virus Genes 2009;40:135-9. [PMID: 19937270 DOI: 10.1007/s11262-009-0425-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2009] [Accepted: 11/10/2009] [Indexed: 10/20/2022]
119
Burns CC, Campagnoli R, Shaw J, Vincent A, Jorba J, Kew O. Genetic inactivation of poliovirus infectivity by increasing the frequencies of CpG and UpA dinucleotides within and across synonymous capsid region codons. J Virol 2009;83:9957-69. [PMID: 19605476 PMCID: PMC2747992 DOI: 10.1128/jvi.00508-09] [Citation(s) in RCA: 127] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2009] [Accepted: 07/09/2009] [Indexed: 01/16/2023]  Open
120
Liu Y, Wimmer E, Paul AV. Cis-acting RNA elements in human and animal plus-strand RNA viruses. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2009;1789:495-517. [PMID: 19781674 PMCID: PMC2783963 DOI: 10.1016/j.bbagrm.2009.09.007] [Citation(s) in RCA: 134] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/04/2009] [Revised: 09/09/2009] [Accepted: 09/13/2009] [Indexed: 02/08/2023]
121
Victoria M, Colina R, Miagostovich MP, Leite JP, Cristina J. Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome? BMC Res Notes 2009;2:176. [PMID: 19735574 PMCID: PMC2749865 DOI: 10.1186/1756-0500-2-176] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2009] [Accepted: 09/07/2009] [Indexed: 01/30/2023]  Open
122
Santangelo PJ. Molecular beacons and related probes for intracellular RNA imaging. WILEY INTERDISCIPLINARY REVIEWS-NANOMEDICINE AND NANOBIOTECHNOLOGY 2009;2:11-9. [DOI: 10.1002/wnan.52] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
123
Pang PS, Planet PJ, Glenn JS. The evolution of the major hepatitis C genotypes correlates with clinical response to interferon therapy. PLoS One 2009;4:e6579. [PMID: 19668364 PMCID: PMC2719056 DOI: 10.1371/journal.pone.0006579] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2009] [Accepted: 07/09/2009] [Indexed: 01/23/2023]  Open
124
Somvanshi P, Seth PK. Predicted RNA secondary structures for the conserved regions in dengue virus. Bioinformation 2009;3:435-9. [PMID: 19759866 PMCID: PMC2737491 DOI: 10.6026/97320630003435] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2008] [Revised: 04/03/2009] [Accepted: 04/16/2009] [Indexed: 11/25/2022]  Open
125
Wu B, Pogany J, Na H, Nicholson BL, Nagy PD, White KA. A discontinuous RNA platform mediates RNA virus replication: building an integrated model for RNA-based regulation of viral processes. PLoS Pathog 2009;5:e1000323. [PMID: 19266082 PMCID: PMC2648310 DOI: 10.1371/journal.ppat.1000323] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2008] [Accepted: 02/03/2009] [Indexed: 01/01/2023]  Open
126
Kapoor A, Slikas E, Simmonds P, Chieochansin T, Naeem A, Shaukat S, Alam MM, Sharif S, Angez M, Zaidi S, Delwart E. A newly identified bocavirus species in human stool. J Infect Dis 2009;199:196-200. [PMID: 19072716 PMCID: PMC2678954 DOI: 10.1086/595831] [Citation(s) in RCA: 253] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
127
Caugant DA. Full sequencing of viral genomes: practical strategies used for the amplification and characterization of foot-and-mouth disease virus. Methods Mol Biol 2009;551:217-230. [PMID: 19521878 PMCID: PMC7122775 DOI: 10.1007/978-1-60327-999-4_17] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
128
Irshad M. Retracted: Genetic diversity in hepatitis C virus (HCV): A brief review. Rev Med Virol 2008;19. [PMID: 19089864 DOI: 10.1002/rmv.603] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
129
Wang Q, Barr I, Guo F, Lee C. Evidence of a novel RNA secondary structure in the coding region of HIV-1 pol gene. RNA (NEW YORK, N.Y.) 2008;14:2478-88. [PMID: 18974280 PMCID: PMC2590956 DOI: 10.1261/rna.1252608] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 01/24/2008] [Accepted: 09/24/2008] [Indexed: 05/20/2023]
130
Davis M, Sagan SM, Pezacki JP, Evans DJ, Simmonds P. Bioinformatic and physical characterizations of genome-scale ordered RNA structure in mammalian RNA viruses. J Virol 2008;82:11824-36. [PMID: 18799591 PMCID: PMC2583674 DOI: 10.1128/jvi.01078-08] [Citation(s) in RCA: 87] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2008] [Accepted: 09/10/2008] [Indexed: 12/24/2022]  Open
131
A highly prevalent and genetically diversified Picornaviridae genus in South Asian children. Proc Natl Acad Sci U S A 2008;105:20482-7. [PMID: 19033469 DOI: 10.1073/pnas.0807979105] [Citation(s) in RCA: 157] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
132
Yang Y, Yi M, Evans DJ, Simmonds P, Lemon SM. Identification of a conserved RNA replication element (cre) within the 3Dpol-coding sequence of hepatoviruses. J Virol 2008;82:10118-28. [PMID: 18684812 PMCID: PMC2566277 DOI: 10.1128/jvi.00787-08] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2008] [Accepted: 07/29/2008] [Indexed: 11/20/2022]  Open
133
Role of the hepatitis C virus core+1 open reading frame and core cis-acting RNA elements in viral RNA translation and replication. J Virol 2008;82:11503-15. [PMID: 18799568 DOI: 10.1128/jvi.01640-08] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
134
Diviney S, Tuplin A, Struthers M, Armstrong V, Elliott RM, Simmonds P, Evans DJ. A hepatitis C virus cis-acting replication element forms a long-range RNA-RNA interaction with upstream RNA sequences in NS5B. J Virol 2008;82:9008-22. [PMID: 18614633 PMCID: PMC2546899 DOI: 10.1128/jvi.02326-07] [Citation(s) in RCA: 81] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2007] [Accepted: 07/02/2008] [Indexed: 12/13/2022]  Open
135
Nayak MK, Balasubramanian G, Sahoo GC, Bhattacharya R, Vinje J, Kobayashi N, Sarkar MC, Bhattacharya MK, Krishnan T. Detection of a novel intergenogroup recombinant Norovirus from Kolkata, India. Virology 2008;377:117-23. [PMID: 18555887 DOI: 10.1016/j.virol.2008.04.027] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2008] [Revised: 04/12/2008] [Accepted: 04/19/2008] [Indexed: 10/21/2022]
136
Ratra R, Lal SK. Functional genomics as a tool in virus research. Indian J Microbiol 2008;48:195-201. [PMID: 23100713 PMCID: PMC3450177 DOI: 10.1007/s12088-008-0032-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2008] [Accepted: 05/10/2008] [Indexed: 01/28/2023]  Open
137
Simmonds P, Karakasiliotis I, Bailey D, Chaudhry Y, Evans DJ, Goodfellow IG. Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses. Nucleic Acids Res 2008;36:2530-46. [PMID: 18319285 PMCID: PMC2377429 DOI: 10.1093/nar/gkn096] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2007] [Revised: 02/02/2008] [Accepted: 02/18/2008] [Indexed: 11/14/2022]  Open
138
Rapid sequence change and geographical spread of human parvovirus B19: comparison of B19 virus evolution in acute and persistent infections. J Virol 2008;82:6427-33. [PMID: 18417586 DOI: 10.1128/jvi.00471-08] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
139
Washenberger CL, Han JQ, Kechris KJ, Jha BK, Silverman RH, Barton DJ. Hepatitis C virus RNA: dinucleotide frequencies and cleavage by RNase L. Virus Res 2007;130:85-95. [PMID: 17604869 PMCID: PMC2186174 DOI: 10.1016/j.virusres.2007.05.020] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2006] [Revised: 05/18/2007] [Accepted: 05/22/2007] [Indexed: 12/25/2022]
140
3' RNA elements in hepatitis C virus replication: kissing partners and long poly(U). J Virol 2007;82:184-95. [PMID: 17942554 DOI: 10.1128/jvi.01796-07] [Citation(s) in RCA: 99] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
141
A highly divergent picornavirus in a marine mammal. J Virol 2007;82:311-20. [PMID: 17942560 DOI: 10.1128/jvi.01240-07] [Citation(s) in RCA: 103] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
142
Keller BC, Johnson CL, Erickson AK, Gale M. Innate immune evasion by hepatitis C virus and West Nile virus. Cytokine Growth Factor Rev 2007;18:535-44. [PMID: 17702639 PMCID: PMC2757293 DOI: 10.1016/j.cytogfr.2007.06.006] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
143
Branscum AJ, Johnson WO, Thurmond MC. BAYESIAN BETA REGRESSION: APPLICATIONS TO HOUSEHOLD EXPENDITURE DATA AND GENETIC DISTANCE BETWEEN FOOT-AND-MOUTH DISEASE VIRUSES. AUST NZ J STAT 2007. [DOI: 10.1111/j.1467-842x.2007.00481.x] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
144
Collective properties of evolving molecular quasispecies. BMC Evol Biol 2007;7:110. [PMID: 17620110 PMCID: PMC1934359 DOI: 10.1186/1471-2148-7-110] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2006] [Accepted: 07/09/2007] [Indexed: 01/15/2023]  Open
145
Delwart EL. Viral metagenomics. Rev Med Virol 2007;17:115-31. [PMID: 17295196 PMCID: PMC7169062 DOI: 10.1002/rmv.532] [Citation(s) in RCA: 224] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
146
Pybus OG, Rambaut A, Belshaw R, Freckleton RP, Drummond AJ, Holmes EC. Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution. Mol Biol Evol 2007;24:845-52. [PMID: 17218639 DOI: 10.1093/molbev/msm001] [Citation(s) in RCA: 118] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
147
Saito T, Hirai R, Loo YM, Owen D, Johnson CL, Sinha SC, Akira S, Fujita T, Gale M. Regulation of innate antiviral defenses through a shared repressor domain in RIG-I and LGP2. Proc Natl Acad Sci U S A 2007;104:582-7. [PMID: 17190814 PMCID: PMC1766428 DOI: 10.1073/pnas.0606699104] [Citation(s) in RCA: 570] [Impact Index Per Article: 31.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2006] [Indexed: 12/25/2022]  Open
148
Hraber PT, Fischer W, Bruno WJ, Leitner T, Kuiken C. Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 5' untranslated region (UTR) fails to classify subtypes. Virol J 2006;3:103. [PMID: 17169155 PMCID: PMC1764733 DOI: 10.1186/1743-422x-3-103] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2006] [Accepted: 12/14/2006] [Indexed: 01/06/2023]  Open
149
Romero TA, Tumban E, Jun J, Lott WB, Hanley KA. Secondary structure of dengue virus type 4 3' untranslated region: impact of deletion and substitution mutations. J Gen Virol 2006;87:3291-3296. [PMID: 17030863 DOI: 10.1099/vir.0.82182-0] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
150
Gultyaev AP, Heus HA, Olsthoorn RCL. An RNA conformational shift in recent H5N1 influenza A viruses. ACTA ACUST UNITED AC 2006;23:272-6. [PMID: 17090581 DOI: 10.1093/bioinformatics/btl559] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
PrevPage 3 of 4 1234Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA