151
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Jagesar DC, Wiering PG, Kay ER, Leigh DA, Brouwer AM. Successive Translocation of the Rings in a [3]Rotaxane. Chemphyschem 2016; 17:1902-12. [PMID: 26918870 DOI: 10.1002/cphc.201501162] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Indexed: 11/09/2022]
Abstract
A [2]rotaxane, a [3]rotaxane and the corresponding thread containing two succinamide (succ) binding stations and a central redox-active pyromellitimide (pmi) station were studied. Infrared spectroelectrochemical experiments revealed the translocation of the macrocycle between the succinamide station and the electrochemically reduced pmi station (radical anion and dianion). Remarkably, in the [3]rotaxane, the rings can be selectively translocated. One-electron reduction leads to the translocation of one of the two macrocycles from the succinamide to the pyromellitimide station, whereas activation of the shuttle through two-electron reduction results in the translocation of both macrocycles: the dianion, due to its higher electron density and hence greater hydrogen-bond accepting affinity, is hydrogen bonded to both macrocycles. Systems with such an on-command contraction are known as molecular muscles. The relative strengths of the binding between the macrocycle and the imide anions could be estimated from the hydrogen-bond-induced shifts in the C=O stretching frequencies of hydrogen-bond accepting amide groups of the macrocycle.
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Affiliation(s)
- Dhiredj C Jagesar
- University of Amsterdam, van 't Hoff Institute for Molecular Sciences, PO Box 94157, 1090 GD, Amsterdam, The Netherlands
| | - Piet G Wiering
- University of Amsterdam, van 't Hoff Institute for Molecular Sciences, PO Box 94157, 1090 GD, Amsterdam, The Netherlands
| | - Euan R Kay
- School of Chemistry, University of Edinburgh, The King's Buildings, West Mains Road, Edinburgh, EH9 3JJ, UK.,EaStCHEM School of Chemistry, University of St Andrews, North Haugh, St Andrews, KY16 9ST, UK
| | - David A Leigh
- School of Chemistry, University of Edinburgh, The King's Buildings, West Mains Road, Edinburgh, EH9 3JJ, UK.,School of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK
| | - Albert M Brouwer
- University of Amsterdam, van 't Hoff Institute for Molecular Sciences, PO Box 94157, 1090 GD, Amsterdam, The Netherlands.
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152
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Legigan T, Riss-Yaw B, Clavel C, Coutrot F. Active Esters as Pseudostoppers for Slippage Synthesis of [2]Pseudorotaxane Building Blocks: A Straightforward Route to Multi-Interlocked Molecular Machines. Chemistry 2016; 22:8835-47. [DOI: 10.1002/chem.201601286] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2016] [Indexed: 01/26/2023]
Affiliation(s)
- Thibaut Legigan
- Supramolecular Machines and ARchitectures Team; Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS; Université Montpellier - ENSCM; case courrier 1706; Bâtiment Chimie (17), 3ème étage, Faculté des Sciences; Place Eugène Bataillon 34095 Montpellier cedex 5 France
| | - Benjamin Riss-Yaw
- Supramolecular Machines and ARchitectures Team; Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS; Université Montpellier - ENSCM; case courrier 1706; Bâtiment Chimie (17), 3ème étage, Faculté des Sciences; Place Eugène Bataillon 34095 Montpellier cedex 5 France
| | - Caroline Clavel
- Supramolecular Machines and ARchitectures Team; Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS; Université Montpellier - ENSCM; case courrier 1706; Bâtiment Chimie (17), 3ème étage, Faculté des Sciences; Place Eugène Bataillon 34095 Montpellier cedex 5 France
| | - Frédéric Coutrot
- Supramolecular Machines and ARchitectures Team; Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS; Université Montpellier - ENSCM; case courrier 1706; Bâtiment Chimie (17), 3ème étage, Faculté des Sciences; Place Eugène Bataillon 34095 Montpellier cedex 5 France
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153
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Franchi P, Bleve V, Mezzina E, Schäfer C, Ragazzon G, Albertini M, Carbonera D, Credi A, Di Valentin M, Lucarini M. Structural Changes of a Doubly Spin-Labeled Chemically Driven Molecular Shuttle Probed by PELDOR Spectroscopy. Chemistry 2016; 22:8745-50. [DOI: 10.1002/chem.201601407] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2016] [Indexed: 01/12/2023]
Affiliation(s)
- Paola Franchi
- Dipartimento di Chimica “G. Ciamician”; University of Bologna; Via Selmi 2 40126 Bologna Italy
| | - Valentina Bleve
- Dipartimento di Chimica “G. Ciamician”; University of Bologna; Via Selmi 2 40126 Bologna Italy
| | - Elisabetta Mezzina
- Dipartimento di Chimica “G. Ciamician”; University of Bologna; Via Selmi 2 40126 Bologna Italy
| | - Christian Schäfer
- Dipartimento di Chimica “G. Ciamician”; University of Bologna; Via Selmi 2 40126 Bologna Italy
| | - Giulio Ragazzon
- Dipartimento di Chimica “G. Ciamician”; University of Bologna; Via Selmi 2 40126 Bologna Italy
| | - Marco Albertini
- Dipartimento di Scienze Chimiche; University of Padova; Via Marzolo 1 35131 Padova Italy
| | - Donatella Carbonera
- Dipartimento di Scienze Chimiche; University of Padova; Via Marzolo 1 35131 Padova Italy
| | - Alberto Credi
- Dipartimento di Chimica “G. Ciamician”; University of Bologna; Via Selmi 2 40126 Bologna Italy
- Dipartimento di Scienze e Tecnologie Agro-alimentari; University of Bologna; Viale Fanin 44 40127 Bologna Italy
| | - Marilena Di Valentin
- Dipartimento di Scienze Chimiche; University of Padova; Via Marzolo 1 35131 Padova Italy
| | - Marco Lucarini
- Dipartimento di Chimica “G. Ciamician”; University of Bologna; Via Selmi 2 40126 Bologna Italy
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154
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Lewis JEM, Bordoli RJ, Denis M, Fletcher CJ, Galli M, Neal EA, Rochette EM, Goldup SM. High yielding synthesis of 2,2'-bipyridine macrocycles, versatile intermediates in the synthesis of rotaxanes. Chem Sci 2016; 7:3154-3161. [PMID: 29997807 PMCID: PMC6005271 DOI: 10.1039/c6sc00011h] [Citation(s) in RCA: 69] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2016] [Accepted: 01/26/2016] [Indexed: 12/13/2022] Open
Abstract
We present an operationally simple approach to 2,2'-bipyridine macrocycles. Our method uses simple starting materials to produce these previously hard to access rotaxane precursors in remarkable yields (typically >65%) across a range of scales (0.1-5 mmol). All of the macrocycles reported are efficiently converted (>90%) to rotaxanes under AT-CuAAC conditions. With the requisite macrocycles finally available in sufficient quantities, we further demonstrate their long term utility through the first gram-scale synthesis of an AT-CuAAC [2]rotaxane and extend this powerful methodology to produce novel Sauvage-type molecular shuttles.
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Affiliation(s)
- J E M Lewis
- Chemistry , University of Southampton , Highfield , Southampton , SO17 1BJ , UK .
| | - R J Bordoli
- School of Biological and Chemical Sciences , Queen Mary University of London , Mile End Road , London , E1 4NS , UK
| | - M Denis
- Chemistry , University of Southampton , Highfield , Southampton , SO17 1BJ , UK .
| | - C J Fletcher
- Chemistry , University of Southampton , Highfield , Southampton , SO17 1BJ , UK .
| | - M Galli
- Chemistry , University of Southampton , Highfield , Southampton , SO17 1BJ , UK .
| | - E A Neal
- School of Biological and Chemical Sciences , Queen Mary University of London , Mile End Road , London , E1 4NS , UK
| | - E M Rochette
- Chemistry , University of Southampton , Highfield , Southampton , SO17 1BJ , UK .
| | - S M Goldup
- Chemistry , University of Southampton , Highfield , Southampton , SO17 1BJ , UK .
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155
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Meng Z, Xiang JF, Chen CF. Directional Molecular Transportation Based on a Catalytic Stopper-Leaving Rotaxane System. J Am Chem Soc 2016; 138:5652-8. [PMID: 27078221 DOI: 10.1021/jacs.6b01852] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Ratchet mechanism has proved to be a key principle in designing molecular motors and machines that exploit random thermal fluctuations for directional motion with energy input. To integrate ratchet mechanism into artificial systems, precise molecular design is a prerequisite to control the pathway of relative motion between their subcomponents, which is still a formidable challenge. Herein, we report a straightforward method to control the transportation barrier of a macrocycle by selectively detaching one of the two stoppers using a novel DBU-catalyzed stopper-leaving reaction in a rotaxane system. The macrocycle was first allowed to thread onto a semidumbbell axle from the open end and subsequently thermodynamically captured into a nonsymmetrical rotaxane. Then, it was driven energetically uphill until it reached a kinetically trapped state by destroying its interaction with ammonium site, and was finally quantitatively released from the other end when the corresponding stopper barrier was removed. Although the directional transportation at the present system was achieved by discrete chemical reactions for the sake of higher transportation efficiency, it represents a new molecular transportation model by the strategy of using stopper-leavable rotaxane.
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Affiliation(s)
- Zheng Meng
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, China.,University of Chinese Academy of Sciences , Beijing 100049, China
| | - Jun-Feng Xiang
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, China
| | - Chuan-Feng Chen
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, China
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156
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Mitra R, Thiele M, Octa-Smolin F, Letzel MC, Niemeyer J. A bifunctional chiral [2]catenane based on 1,1'-binaphthyl-phosphates. Chem Commun (Camb) 2016; 52:5977-80. [PMID: 27058367 DOI: 10.1039/c6cc01980c] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A novel [2]catenane was synthesised by ring-closing metathesis from a Ca-bisphosphate template. The resulting interlocked structure features two chiral 1,1'-binaphthyl-phosphates, leading to a bifunctional catenane structure. Initial binding studies point at the applicability of such mechanically interlocked bisphosphates as artificial receptors for dicationic guest molecules.
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Affiliation(s)
- R Mitra
- Institute of Organic Chemistry, Department of Chemistry, University of Duisburg-Essen, Universitätsstrasse 7, 45141 Essen, Germany.
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157
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Waelès P, Riss-Yaw B, Coutrot F. Synthesis of a pH-Sensitive Hetero[4]Rotaxane Molecular Machine that Combines [c2]Daisy and [2]Rotaxane Arrangements. Chemistry 2016; 22:6837-45. [DOI: 10.1002/chem.201600453] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2016] [Indexed: 11/10/2022]
Affiliation(s)
- Philip Waelès
- Supramolecular Machines and ARchitectures Team; Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS; Université Montpellier, ENSCM; case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon 34095 Montpellier cedex 5 France
| | - Benjamin Riss-Yaw
- Supramolecular Machines and ARchitectures Team; Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS; Université Montpellier, ENSCM; case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon 34095 Montpellier cedex 5 France
| | - Frédéric Coutrot
- Supramolecular Machines and ARchitectures Team; Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS; Université Montpellier, ENSCM; case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon 34095 Montpellier cedex 5 France
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158
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Tabacchi G, Silvi S, Venturi M, Credi A, Fois E. Dethreading of a Photoactive Azobenzene-Containing Molecular Axle from a Crown Ether Ring: A Computational Investigation. Chemphyschem 2016; 17:1913-9. [PMID: 26918775 DOI: 10.1002/cphc.201501160] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2015] [Revised: 02/23/2016] [Indexed: 11/08/2022]
Abstract
Pseudorotaxanes formed by a dibenzo[24]crown-8 ring (R) and a dialkylammonium axle bearing either two E- or two Z-azobenzene units (EE-A or ZZ-A) revealed useful for the construction of light-powered molecular machines and motors, as they provide the opportunity of photocontrolling self-assembly/disassembly processes. The potential energies profiles for the dethreading of these complexes have been investigated by adopting a combination of first-principles molecular dynamics, metadynamics and quantum-chemical geometry optimization approaches. While the dethreading of the EE-A axle is associated with a monotonic energy increase, for that of the ZZ-A axle a transition state and an intermediate structure, in which the components are still threaded together, are found. The rate determining step for the dethreading of the ZZ axle has a higher energy barrier than that of the EE axle, in agreement with the experimental kinetic data. Moreover, the results suggest that the elliptic shape of the ring cavity is important for discriminating between the E and Z terminal azobenzene during dethreading.
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Affiliation(s)
- Gloria Tabacchi
- Dipartimento di Scienza ed Alta Tecnologia and INSTM, Università dell'Insubria, Via Valleggio 11, I-, 22100, Como, Italy
| | - Serena Silvi
- Photochemical Nanosciences Laboratory and Interuniversity Center for the Chemical Conversion of Solar Energy, Dipartimento di Chimica "G. Ciamician", Università di Bologna, Via Selmi 2, I-40126, Bologna, Italy
| | - Margherita Venturi
- Photochemical Nanosciences Laboratory and Interuniversity Center for the Chemical Conversion of Solar Energy, Dipartimento di Chimica "G. Ciamician", Università di Bologna, Via Selmi 2, I-40126, Bologna, Italy
| | - Alberto Credi
- Photochemical Nanosciences Laboratory and Interuniversity Center for the Chemical Conversion of Solar Energy, Dipartimento di Chimica "G. Ciamician", Università di Bologna, Via Selmi 2, I-40126, Bologna, Italy.
| | - Ettore Fois
- Dipartimento di Scienza ed Alta Tecnologia and INSTM, Università dell'Insubria, Via Valleggio 11, I-, 22100, Como, Italy.
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159
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Ariga K, Li J, Fei J, Ji Q, Hill JP. Nanoarchitectonics for Dynamic Functional Materials from Atomic-/Molecular-Level Manipulation to Macroscopic Action. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2016; 28:1251-86. [PMID: 26436552 DOI: 10.1002/adma.201502545] [Citation(s) in RCA: 308] [Impact Index Per Article: 34.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2015] [Revised: 07/27/2015] [Indexed: 05/21/2023]
Abstract
Objects in all dimensions are subject to translational dynamism and dynamic mutual interactions, and the ability to exert control over these events is one of the keys to the synthesis of functional materials. For the development of materials with truly dynamic functionalities, a paradigm shift from "nanotechnology" to "nanoarchitectonics" is proposed, with the aim of design and preparation of functional materials through dynamic harmonization of atomic-/molecular-level manipulation and control, chemical nanofabrication, self-organization, and field-controlled organization. Here, various examples of dynamic functional materials are presented from the atom/molecular-level to macroscopic dimensions. These systems, including atomic switches, molecular machines, molecular shuttles, motional crystals, metal-organic frameworks, layered assemblies, gels, supramolecular assemblies of biomaterials, DNA origami, hollow silica capsules, and mesoporous materials, are described according to their various dynamic functions, which include short-term plasticity, long-term potentiation, molecular manipulation, switchable catalysis, self-healing properties, supramolecular chirality, morphological control, drug storage and release, light-harvesting, mechanochemical transduction, molecular tuning molecular recognition, hand-operated nanotechnology.
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Affiliation(s)
- Katsuhiko Ariga
- World Premier International (WPI) Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, 305-0044, Japan
| | - Junbai Li
- Beijing National Laboratory for Molecular Science, CAS Key Lab of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Science, Beijing, 100190, P. R. China
| | - Jinbo Fei
- Beijing National Laboratory for Molecular Science, CAS Key Lab of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Science, Beijing, 100190, P. R. China
| | - Qingmin Ji
- World Premier International (WPI) Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, 305-0044, Japan
| | - Jonathan P Hill
- World Premier International (WPI) Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, 305-0044, Japan
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160
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Cakmak Y, Erbas-Cakmak S, Leigh DA. Asymmetric Catalysis with a Mechanically Point-Chiral Rotaxane. J Am Chem Soc 2016; 138:1749-51. [PMID: 26835978 PMCID: PMC4805306 DOI: 10.1021/jacs.6b00303] [Citation(s) in RCA: 116] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
![]()
Mechanical
point-chirality in a [2]rotaxane is utilized for asymmetric
catalysis. Stable enantiomers of the rotaxane result from a bulky
group in the middle of the thread preventing a benzylic amide macrocycle
shuttling between different sides of a prochiral center, creating
point chirality in the vicinity of a secondary amine group. The resulting
mechanochirogenesis delivers enantioselective organocatalysis via
both enamine (up to 71:29 er) and iminium (up to 68:32 er) activation
modes.
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Affiliation(s)
- Yusuf Cakmak
- School of Chemistry, University of Manchester , Oxford Road, Manchester M13 9PL, United Kingdom
| | - Sundus Erbas-Cakmak
- School of Chemistry, University of Manchester , Oxford Road, Manchester M13 9PL, United Kingdom
| | - David A Leigh
- School of Chemistry, University of Manchester , Oxford Road, Manchester M13 9PL, United Kingdom
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161
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Schweez C, Shushkov P, Grimme S, Höger S. Synthesis and Dynamics of Nanosized Phenylene-Ethynylene-Butadiynylene Rotaxanes and the Role of Shape Persistence. Angew Chem Int Ed Engl 2016; 55:3328-33. [PMID: 26836984 PMCID: PMC4797704 DOI: 10.1002/anie.201509702] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2015] [Revised: 12/08/2015] [Indexed: 11/21/2022]
Abstract
Phenylacetylene‐based [2]rotaxanes were synthesized by a covalent‐template approach by aminolysis of the corresponding prerotaxanes. The wheel and the bulky stoppers are made of phenylene–ethynylene–butadiynylene macrocycles of the same size. The stoppers are large enough to enable the synthesis and purification of the rotaxane. However, the wheel unthreads from the axle at elevated temperatures. The deslipping kinetics and the activation parameters were determined. We described theoretically the unthreading by state‐of‐the‐art DFT‐based molecular‐mechanics models and a string method for the simulation of rare events. This approach enabled us to characterize in detail the unthreading mechanism, which involves the folding of the stopper during its passage through the wheel opening, a process that defies intuitive geometrical considerations. The conformational and energetic features of the transition allowed us to infer the molecular residues controlling the disassembly timescale.
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Affiliation(s)
- Christopher Schweez
- Kekulé Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
| | - Philip Shushkov
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Beringstrasse 4, 53115, Bonn, Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Beringstrasse 4, 53115, Bonn, Germany.
| | - Sigurd Höger
- Kekulé Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany.
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162
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Liu W, Peck EM, Smith BD. High Affinity Macrocycle Threading by a Near-Infrared Croconaine Dye with Flanking Polymer Chains. J Phys Chem B 2016; 120:995-1001. [PMID: 26807599 DOI: 10.1021/acs.jpcb.5b11961] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Croconaine dyes have narrow and intense absorption bands at ∼800 nm, very weak fluorescence, and high photostabilities, which combine to make them very attractive chromophores for absorption-based imaging or laser heating technologies. The physical supramolecular properties of croconaine dyes have rarely been investigated, especially in water. This study focuses on a molecular threading process that encapsulates a croconaine dye inside a tetralactam macrocycle in organic or aqueous solvent. Macrocycle association and rate constant data are reported for a series of croconaine structures with different substituents attached to the ends of the dye. The association constants were highest in water (Ka ∼ 10(9) M(-1)), and the threading rate constants (kon) increased in the solvent order H2O > MeOH > CHCl3. Systematic variation of croconaine substituents located just outside the croconaine/macrocycle complexation interface hardly changed Ka but had a strong influence on kon. A croconaine dye with N-propyl groups at each end of the structure exhibited a desirable mixture of macrocycle threading properties; that is, there was rapid and quantitative croconaine/macrocycle complexation at relatively high concentrations in water, and no dissociation of the preassembled complex when it was diluted into a solution of fetal bovine serum, even after laser-induced photothermal heating of the solution. The combination of favorable near-infrared absorption properties and tunable mechanical stability makes threaded croconaine/macrocycle complexes very attractive as molecular probes or as supramolecular composites for various applications in absorption-based imaging or photothermal therapy.
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Affiliation(s)
- Wenqi Liu
- Department of Chemistry and Biochemistry, University of Notre Dame , 236 Nieuwland Science Hall, Notre Dame, Indiana 46556, United States
| | - Evan M Peck
- Department of Chemistry and Biochemistry, University of Notre Dame , 236 Nieuwland Science Hall, Notre Dame, Indiana 46556, United States
| | - Bradley D Smith
- Department of Chemistry and Biochemistry, University of Notre Dame , 236 Nieuwland Science Hall, Notre Dame, Indiana 46556, United States
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163
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Li T, Zhang H, Hu L, Shao F. Topoisomerase-Based Preparation and AFM Imaging of Multi-Interlocked Circular DNA. Bioconjug Chem 2016; 27:616-20. [PMID: 26745453 DOI: 10.1021/acs.bioconjchem.5b00606] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Multi-interlocked circular DNA structures have been in high demand for fabricating complicated functional DNA architectures and nanodevices such as molecular switches, shuttles, and motors. Even though various innovative methods have been developed in the past, creation of multi-interlocked circular DNA structures with defined numbers of DNA molecules and linking patterns is still a challenging task nowadays. Here, we propose a top-down decatenation of kinetoplast DNA as a new approach for creating multi-interlocked circular DNA structures. Through optimizing the amount and reaction time of topoisomerase II, we synthesized completely mutually interlocked tricircular, tetra-circular, and oligo-circular DNA structures, which have not yet been acquirable through any other existing synthetic means. The catenation structures of multiple circular DNA were further verified through atomic force microscopic analysis of the backbone overlapping patterns and the circumference. It accordingly is our expectation that the top-down enzymatic approaches could offer a highly interlocked network with defined numbers of circular DNA with simple protocols, and could consequently be beneficial to the design and fabrication of sophisticated functional molecules and nanodevices in the areas of supramolecular chemistry, DNA nanotechnology, and material science.
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Affiliation(s)
- Tevin Li
- Lexington High School , 251 Waltham Street, Lexington, Massachusetts 02421, United States
| | - Hao Zhang
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University , 21 Nanyang Link, Singapore, 637371
| | - Lianzhe Hu
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University , 21 Nanyang Link, Singapore, 637371
| | - Fangwei Shao
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University , 21 Nanyang Link, Singapore, 637371
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164
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Nakamura T, Kimura H, Okuhara T, Yamamura M, Nabeshima T. A Hierarchical Self-Assembly System Built Up from Preorganized Tripodal Helical Metal Complexes. J Am Chem Soc 2016; 138:794-7. [PMID: 26744899 DOI: 10.1021/jacs.5b12752] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The hierarchical organization strategy has realized elaborate supramolecular structures that are difficult to achieve by a one-pot thermodynamically driven self-assembly. Self-assembly via Schiff base formation of the preorganized tripodal helical unit 2(2+), which is composed of the tris(bipyridyl) ligand 1 and octahedral metal ion (Ru(II) and Fe(II)), lead to two supramolecular structures, i.e., a macrobicyclic dimer and an interlocked helicate. Notably, the interlocked helicate had a unique motif with an elongated shape (∼ 58 Å) and linearly aligned metal centers with homochiral configurations (all-Δ or all-Λ), which shows potential for allosteric regulation based on the long-range transmittance of the structural information.
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Affiliation(s)
- Takashi Nakamura
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Interdisciplinary Materials Science (TIMS), University of Tsukuba , 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Hikaru Kimura
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Interdisciplinary Materials Science (TIMS), University of Tsukuba , 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Takashi Okuhara
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Interdisciplinary Materials Science (TIMS), University of Tsukuba , 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Masaki Yamamura
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Interdisciplinary Materials Science (TIMS), University of Tsukuba , 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Tatsuya Nabeshima
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Interdisciplinary Materials Science (TIMS), University of Tsukuba , 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
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165
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Fu X, Zhang Q, Rao SJ, Qu DH, Tian H. One-pot synthesis of a [c2]daisy-chain-containing hetero[4]rotaxane via a self-sorting strategy. Chem Sci 2016; 7:1696-1701. [PMID: 28808537 PMCID: PMC5535066 DOI: 10.1039/c5sc04844c] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2015] [Accepted: 01/12/2016] [Indexed: 12/15/2022] Open
Abstract
The construction and efficient synthesis of hetero[n]rotaxanes with high structural complexity are always attractive challenges. Herein, we demonstrate a facile one-pot preparation of a hetero[4]rotaxane, by employing a self-sorting strategy, which contains an interpenetrated dibenzo-24-crown-8 (DB24C8) based [c2]daisy chain structure and is ended with a benzo-21-crown-7 (B21C7) based rotaxane at each side. The key to the design involved encoding the selective threading using a steric hindrance-related "language", where highly selective self-assemblies occurred in a three-component self-sorting process, which included the threading of a benzylalkylammonium into a B21C7 and interpenetrated dimerized formation of a DB24C8 based [c2]daisy chain simultaneously; the precise pre-assembled system resulted in the efficient synthesis of hetero[4]rotaxane with a high-level of structural complexity under the "CuAAC" reaction.
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Affiliation(s)
- Xin Fu
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals , East China University of Science and Technology , 130 Meilong Road , Shanghai , 200237 , China .
| | - Qi Zhang
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals , East China University of Science and Technology , 130 Meilong Road , Shanghai , 200237 , China .
| | - Si-Jia Rao
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals , East China University of Science and Technology , 130 Meilong Road , Shanghai , 200237 , China .
| | - Da-Hui Qu
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals , East China University of Science and Technology , 130 Meilong Road , Shanghai , 200237 , China .
| | - He Tian
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals , East China University of Science and Technology , 130 Meilong Road , Shanghai , 200237 , China .
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166
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Wong HL, Yeung MCL, Yam VWW. Transition Metal-Based Photofunctional Materials: Recent Advances and Potential Applications. STRUCTURE AND BONDING 2016:201-289. [DOI: 10.1007/430_2015_204] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/04/2025]
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167
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Yu G, Suzaki Y, Osakada K. Ferrocene-containing [1]-, [2]-, [3]- and [4]rotaxanes synthesized from a common precursor. RSC Adv 2016. [DOI: 10.1039/c6ra05688a] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
[1]-, [2]-, [3]- and [4]rotaxanes were synthesized by reaction of azide compounds with dialkylammonium with ferrocenyl and alkynyl terminal groups.
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Affiliation(s)
- Gilbert Yu
- Chemical Resources Laboratory R1-3
- Tokyo Institute of Technology
- Yokohama
- Japan
- Ateneo de Manila University
| | - Yuji Suzaki
- Chemical Resources Laboratory R1-3
- Tokyo Institute of Technology
- Yokohama
- Japan
| | - Kohtaro Osakada
- Chemical Resources Laboratory R1-3
- Tokyo Institute of Technology
- Yokohama
- Japan
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168
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Evans NH, Gell CE, Peach MJG. The synthesis of a pyridine-N-oxide isophthalamide rotaxane utilizing supplementary amide hydrogen bond interactions. Org Biomol Chem 2016; 14:7972-81. [DOI: 10.1039/c6ob01435f] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A pyridine-N-oxide containing rotaxane has been prepared in 32% yield. The role of macrocycle structure in successful pseudo-rotaxane formation has been rationalised by a combination of NMR spectroscopy, X-ray crystallography and computational modelling.
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169
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Pairault N, Barat R, Tranoy-Opalinski I, Renoux B, Thomas M, Papot S. Rotaxane-based architectures for biological applications. CR CHIM 2016. [DOI: 10.1016/j.crci.2015.05.012] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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170
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Liu W, Peck EM, Hendzel KD, Smith BD. Sensitive Structural Control of Macrocycle Threading by a Fluorescent Squaraine Dye Flanked by Polymer Chains. Org Lett 2015; 17:5268-71. [PMID: 26452041 PMCID: PMC4636930 DOI: 10.1021/acs.orglett.5b02633] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A macrocyclic tetralactam is threaded by a complementary squaraine dye that is flanked by two polyethylene glycol chains to produce a pseudorotaxane complex with favorable near-infrared fluorescence properties. The association thermodynamics and kinetics were measured for a homologous series of squaraines with different N-alkyl substituents at both ends of the dye. The results show that subtle changes in substituent steric size have profound effects on threading kinetics without greatly altering the very high association constant.
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Affiliation(s)
- Wenqi Liu
- Department of Chemistry and Biochemistry, 236 Nieuwland Science Hall, University of Notre Dame, Notre Dame, Indiana 46556, USA
| | - Evan M. Peck
- Department of Chemistry and Biochemistry, 236 Nieuwland Science Hall, University of Notre Dame, Notre Dame, Indiana 46556, USA
| | - Kevin D. Hendzel
- Department of Chemistry and Biochemistry, 236 Nieuwland Science Hall, University of Notre Dame, Notre Dame, Indiana 46556, USA
| | - Bradley D. Smith
- Department of Chemistry and Biochemistry, 236 Nieuwland Science Hall, University of Notre Dame, Notre Dame, Indiana 46556, USA
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171
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Wang HX, Meng Z, Xiang JF, Xia YX, Sun Y, Hu SZ, Chen H, Yao J, Chen CF. Guest-dependent directional complexation based on triptycene derived oxacalixarene: formation of oriented rotaxanes. Chem Sci 2015; 7:469-474. [PMID: 29899891 PMCID: PMC5964692 DOI: 10.1039/c5sc03511b] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2015] [Accepted: 10/07/2015] [Indexed: 12/27/2022] Open
Abstract
Structural changes in the guest cause inversion of the dominant threading direction in triptycene derived oxacalixarene with different semi-cavities.
The manipulation of supramolecular devices to carry out sophisticated and programmed tasks is bound up with the spatial allocation of their components, especially the threading direction of the guest, which controls the host–guest orientation in the device. However, insights are needed to probe more possibilities for steering the threading direction. We have developed a new system consisting of a three-dimensional nonsymmetric oxacalixarene (H) with a fixed comformation and (bi)pyridinium salts (G1–G3), in which we found that based on the intrinsic discrepancies between the two semi-cavities of H, the electron densities of the axles greatly affect the threading direction. This was unequivocally demonstrated by NMR spectra and single crystal structures. With elaborate design, unidirectional threading was achieved, resulting in an oriented rotaxane. Therefore, we describe a new approach in which the threading direction and final orientation may be finely controlled by adjustment of the structure of the guest.
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Affiliation(s)
- Han-Xiao Wang
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China. .,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zheng Meng
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China. .,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jun-Feng Xiang
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
| | - Yu-Xiang Xia
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
| | - Yihua Sun
- CAS Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
| | - Shu-Zhen Hu
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
| | - Hui Chen
- CAS Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
| | - Jiannian Yao
- CAS Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
| | - Chuan-Feng Chen
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
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172
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Neelakandan PP, Jiménez A, Thoburn JD, Nitschke JR. An Autocatalytic System of Photooxidation-Driven Substitution Reactions on a FeII4L6Cage Framework. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201507045] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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173
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Neelakandan PP, Jiménez A, Thoburn JD, Nitschke JR. An Autocatalytic System of Photooxidation-Driven Substitution Reactions on a Fe(II)4L6 Cage Framework. Angew Chem Int Ed Engl 2015; 54:14378-82. [PMID: 26437971 DOI: 10.1002/anie.201507045] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2015] [Revised: 09/15/2015] [Indexed: 12/11/2022]
Abstract
The functions of life are accomplished by systems exhibiting nonlinear kinetics: autocatalysis, in particular, is integral to the signal amplification that allows for biological information processing. Novel synthetic autocatalytic systems provide a foundation for the design of artificial chemical networks capable of carrying out complex functions. Here we report a set of Fe(II)4L6 cages containing BODIPY chromophores having tuneable photosensitizing properties. Electron-rich anilines were observed to displace electron-deficient anilines at the dynamic-covalent imine bonds of these cages. When iodoaniline residues were incorporated, heavy-atom effects led to enhanced (1)O2 production. The incorporation of (methylthio)aniline residues into a cage allowed for the design of an autocatalytic system: oxidation of the methylthio groups into sulfoxides make them electron-deficient and allows their displacement by iodoanilines, generating a better photocatalyst and accelerating the reaction.
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Affiliation(s)
- Prakash P Neelakandan
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW (UK).,Current address: Institute of Nano Science and Technology, Habitat Centre, Phase 10, Sector 64, Mohali 160062 (India)
| | - Azucena Jiménez
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW (UK).,Current address: Department of Chemistry, University of Oviedo, Julian Clavería 8, Oviedo 33006 (Spain)
| | - John D Thoburn
- Department of Chemistry, Randolph-Macon College, Ashland, VA 23005 (USA)
| | - Jonathan R Nitschke
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW (UK).
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174
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Martinez-Cuezva A, Rodrigues LV, Navarro C, Carro-Guillen F, Buriol L, Frizzo CP, Martins MAP, Alajarin M, Berna J. Dethreading of Tetraalkylsuccinamide-Based [2]Rotaxanes for Preparing Benzylic Amide Macrocycles. J Org Chem 2015; 80:10049-59. [DOI: 10.1021/acs.joc.5b01651] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Alberto Martinez-Cuezva
- Departamento
de Química Orgánica, Facultad de Química, Regional
Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Leticia V. Rodrigues
- Núcleo
de Química de Heterociclos (NUQUIMHE), Departamento de Química, Universidade Federal de Santa Maria, 97105-900 Santa Maria-RS, Brazil
| | - Cristian Navarro
- Departamento
de Química Orgánica, Facultad de Química, Regional
Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Fernando Carro-Guillen
- Departamento
de Química Orgánica, Facultad de Química, Regional
Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Lilian Buriol
- Núcleo
de Química de Heterociclos (NUQUIMHE), Departamento de Química, Universidade Federal de Santa Maria, 97105-900 Santa Maria-RS, Brazil
| | - Clarissa P. Frizzo
- Núcleo
de Química de Heterociclos (NUQUIMHE), Departamento de Química, Universidade Federal de Santa Maria, 97105-900 Santa Maria-RS, Brazil
| | - Marcos A. P. Martins
- Núcleo
de Química de Heterociclos (NUQUIMHE), Departamento de Química, Universidade Federal de Santa Maria, 97105-900 Santa Maria-RS, Brazil
| | - Mateo Alajarin
- Departamento
de Química Orgánica, Facultad de Química, Regional
Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Jose Berna
- Departamento
de Química Orgánica, Facultad de Química, Regional
Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
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175
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Diniz AM, Basílio N, Cruz H, Pina F, Parola AJ. Spatiotemporal control over the co-conformational switching in pH-responsive flavylium-based multistate pseudorotaxanes. Faraday Discuss 2015; 185:361-79. [PMID: 26395804 DOI: 10.1039/c5fd00078e] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
A multistate molecular dyad containing flavylium and viologen units was synthesized and the pH dependent thermodynamics of the network completely characterized by a variety of spectroscopic techniques such as NMR, UV-vis and stopped-flow. The flavylium cation is only stable at acidic pH values. Above pH ≈ 5 the hydration of the flavylium leads to the formation of the hemiketal followed by ring-opening tautomerization to give the cis-chalcone. Finally, this last species isomerizes to give the trans-chalcone. For the present system only the flavylium cation and the trans-chalcone species could be detected as being thermodynamically stable. The hemiketal and the cis-chalcone are kinetic intermediates with negligible concentrations at the equilibrium. All stable species of the network were found to form 1 : 1 and 2 : 1 host : guest complexes with cucurbit[7]uril (CB7) with association constants in the ranges 10(5)-10(8) M(-1) and 10(3)-10(4) M(-1), respectively. The 1 : 1 complexes were particularly interesting to devise pH responsive bistable pseudorotaxanes: at basic pH values (≈12) the flavylium cation interconverts into the deprotonated trans-chalcone in a few minutes and under these conditions the CB7 wheel was found to be located around the viologen unit. A decrease in pH to values around 1 regenerates the flavylium cation in seconds and the macrocycle is translocated to the middle of the axle. On the other hand, if the pH is decreased to 6, the deprotonated trans-chalcone is neutralized to give a metastable species that evolves to the thermodynamically stable flavylium cation in ca. 20 hours. By taking advantage of the pH-dependent kinetics of the trans-chalcone/flavylium interconversion, spatiotemporal control of the molecular organization in pseudorotaxane systems can be achieved.
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Affiliation(s)
- Ana Marta Diniz
- Laboratório Associado para a Química Verde (LAQV), REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Monte de Caparica, Portugal. and Departamento de Química, Escola Superior de Tecnologia da Saúde de Lisboa - Instituto Politécnico de Lisboa, Lisboa, Portugal
| | - Nuno Basílio
- Laboratório Associado para a Química Verde (LAQV), REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Monte de Caparica, Portugal.
| | - Hugo Cruz
- Laboratório Associado para a Química Verde (LAQV), REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Monte de Caparica, Portugal.
| | - Fernando Pina
- Laboratório Associado para a Química Verde (LAQV), REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Monte de Caparica, Portugal.
| | - A Jorge Parola
- Laboratório Associado para a Química Verde (LAQV), REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Monte de Caparica, Portugal.
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176
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Affiliation(s)
- Sundus Erbas-Cakmak
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - David A. Leigh
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Charlie T. McTernan
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Alina
L. Nussbaumer
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
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177
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Abstract
The active transport of ions and molecules across cell membranes is essential to creating the concentration gradients that sustain life in all living organisms, be they bacteria, fungi, plants, animals or Homo sapiens. Nature uses active transport everywhere for everything. Molecular biologists have long been attracted to the study of active transport and continue to this day to investigate and elucidate the tertiary structures of the complex motor proteins that sustain it, while physicists, interested in nonequilibrium statistical mechanics, have developed theoretical models to describe the driven ratcheting motions that are crucial to its function. The increasingly detailed understanding that contemporary science has acquired relating to active transport, however, has yet to lead to the design and construction of artificial molecular motors capable of employing ratchet-driven motions that can also perform work against concentration gradients. Mechanically interlocked molecules (MIMs) in the form of pseudo- and semirotaxanes are showing some encouraging signs in meeting these goals. This review summarizes recent progress in making artificial molecular motors that can perform work by "pumping" tetracationic rings into high-energy states. The launching pad is a bistable [2]rotaxane whose dumbbell component contains two electron-donating recognition sites, one, a tetrathiafulvalene (TTF) unit, which interacts more strongly with the ring component, cyclobis(paraquat-p-phenylene) (CBPQT(4+)), containing two electron-accepting bipyridinium units, than does the other 1,5-dioxynaphthalene (DNP) unit. Switching can be induced electrochemically by oxidizing the TTF unit to a TTF(•+) radical cation, whereupon Coulombic repulsion takes care of moving the ring to the DNP unit. Reduction of the radical cation resets the switch. Molecular switches operate at, or close to, equilibrium. Any work done during one switching event is undone during the reset. Molecular motors, on the other hand, rely on a flux of energy, and a ratchet mechanism to make periodic changes to the potential energy surface of a system in order to move molecules uphill to higher energy states. Forging a path from molecular switches to motors involved designing a molecular pump prototype. An asymmetric dumbbell with a 2-isopropylphenyl (neutral) end and a 3,5-dimethylpyridinium (charged) end with a DNP recognition site to entice CBPQT(4+) rings out of solution exhibits relative unidirectional movement of the rings with respect to the dumbbell. Redox chemistry does the trick. During the oxidative cycle, the rings enter the dumbbell by passing over the neutral end onto the recognition site; in the reduction cycle, much of the recognition is lost and the rings find their way back into solution by leaving the dumbbell from the charged end. This on-one-end, off-the-other process can be repeated over and over again using light as the energy source in the presence of a photosensitizer and a compound that shuttles electrons back and forth. Although this prototype demonstrates ratchet-driven translational motion, no work is done. A ring enters the dumbbell from one end and leaves from the other end. Another deficiency of the prototype is the fact that, although the recognition site is muted on reduction, it retains some attraction for the ring. What if the recognition site was attractive initially and then became repulsive? This question was answered by turning to radical chemistry and employing the known stabilization behavior of a bipyridinium radical cation and the bisradical dication, generated on reduction of the CBPQT(4+) ring, to pluck rings out of solution and thread them over the charged end of the pump portion of a semidumbbell. On subsequent oxidation, the pump is primed and the rings pass through a one-way door, given a little thermal energy, onto a collecting-chain where they find themselves accumulating where they would rather not be present. In this manner, an artificial molecular pump mimics the pumping machinery commonplace in biological systems. Looking beyond this state-of-the-art artificial molecular pump, we discuss, from a theoretical standpoint, the measures that would need to be taken in order to render its operation autonomous.
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Affiliation(s)
- Chuyang Cheng
- Department of Chemistry, Northwestern University , 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Paul R McGonigal
- Department of Chemistry, Northwestern University , 2145 Sheridan Road, Evanston, Illinois 60208, United States
- Department of Chemistry, Durham University , South Road, Durham DH1 3LE, United Kingdom
| | - J Fraser Stoddart
- Department of Chemistry, Northwestern University , 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - R Dean Astumian
- Department of Physics and Astronomy, The University of Maine , Orono, Maine 04469, United States
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178
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Galli M, Lewis JEM, Goldup SM. A Stimuli-Responsive Rotaxane-Gold Catalyst: Regulation of Activity and Diastereoselectivity. Angew Chem Int Ed Engl 2015; 54:13545-9. [PMID: 26387887 PMCID: PMC4678423 DOI: 10.1002/anie.201505464] [Citation(s) in RCA: 132] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2015] [Revised: 08/06/2015] [Indexed: 12/20/2022]
Abstract
A rotaxane-based Au catalyst was developed and the effect of the mechanical bond on its behavior was studied. Unlike the non-interlocked thread, the rotaxane requires a catalytically innocent cofactor, the identity of which significantly influences both the yield and diastereoselectivity of the reaction. Under optimized conditions, Au(I) (the catalyst), Ag(I) (to abstract the Cl(-) ligand), and Cu(I) (the cofactor) combine to produce a catalyst with excellent activity and selectivity.
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Affiliation(s)
- Marzia Galli
- School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ (UK)
| | - James E M Lewis
- School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ (UK)
| | - Stephen M Goldup
- School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ (UK).
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179
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Galli M, Lewis JEM, Goldup SM. A Stimuli-Responsive Rotaxane-Gold Catalyst: Regulation of Activity and Diastereoselectivity. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201505464] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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180
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Varghese S, Elemans JAAW, Rowan AE, Nolte RJM. Molecular computing: paths to chemical Turing machines. Chem Sci 2015; 6:6050-6058. [PMID: 28717447 PMCID: PMC5504628 DOI: 10.1039/c5sc02317c] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Accepted: 08/06/2015] [Indexed: 11/21/2022] Open
Abstract
In this perspective, we highlight some of the recent advances in the development of molecular and biomolecular systems for performing logic operations and computing. We also present a blueprint of a chemical Turing machine using a processive catalytic approach.
To comply with the rapidly increasing demand of information storage and processing, new strategies for computing are needed. The idea of molecular computing, where basic computations occur through molecular, supramolecular, or biomolecular approaches, rather than electronically, has long captivated researchers. The prospects of using molecules and (bio)macromolecules for computing is not without precedent. Nature is replete with examples where the handling and storing of data occurs with high efficiencies, low energy costs, and high-density information encoding. The design and assembly of computers that function according to the universal approaches of computing, such as those in a Turing machine, might be realized in a chemical way in the future; this is both fascinating and extremely challenging. In this perspective, we highlight molecular and (bio)macromolecular systems that have been designed and synthesized so far with the objective of using them for computing purposes. We also present a blueprint of a molecular Turing machine, which is based on a catalytic device that glides along a polymer tape and, while moving, prints binary information on this tape in the form of oxygen atoms.
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Affiliation(s)
- Shaji Varghese
- Radboud University , Institute for Molecules and Materials , Heyendaalseweg 135 , 6525 AJ Nijmegen , The Netherlands . ;
| | - Johannes A A W Elemans
- Radboud University , Institute for Molecules and Materials , Heyendaalseweg 135 , 6525 AJ Nijmegen , The Netherlands . ;
| | - Alan E Rowan
- Radboud University , Institute for Molecules and Materials , Heyendaalseweg 135 , 6525 AJ Nijmegen , The Netherlands . ;
| | - Roeland J M Nolte
- Radboud University , Institute for Molecules and Materials , Heyendaalseweg 135 , 6525 AJ Nijmegen , The Netherlands . ;
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181
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Berg M, Nozinovic S, Engeser M, Lützen A. A Cholesterol Containing pH-Sensitive Bistable [2]Rotaxane. European J Org Chem 2015. [DOI: 10.1002/ejoc.201500657] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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182
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Waelès P, Clavel C, Fournel-Marotte K, Coutrot F. Synthesis of triazolium-based mono- and tris-branched [1]rotaxanes using a molecular transporter of dibenzo-24-crown-8. Chem Sci 2015; 6:4828-4836. [PMID: 28717488 PMCID: PMC5502395 DOI: 10.1039/c5sc01722j] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2015] [Accepted: 05/28/2015] [Indexed: 11/21/2022] Open
Abstract
We report a diverted route to [1]rotaxane and tris-branched [1]rotaxane that are devoid of any efficient template and which could not be obtained by classical straightforward strategies. The described chemical route relies on the utilization of a "macrocycle transporter", which is able first to bind a macrocycle, second to link temporarily a triazolium-containing molecular axle, and third to deliver the macrocycle around the new docked axle through molecular machinery in a [1]rotaxane structure. The extended encircled thread is eventually cleaved by an amine or a triamine to afford the triazolium-containing [1]rotaxanes, releasing at the same time, the macrocycle transporter as a recyclable species.
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Affiliation(s)
- P Waelès
- Supramolecular Machines and Architectures Team , Faculté des Sciences , Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS , Université Montpellier , ENSCM , case courrier 1706, Bâtiment Chimie (17), 3ème étage, Place Eugène Bataillon , 34095 Montpellier cedex 5 , France . ; http://www.glycorotaxane.fr ; ; Tel: +33 4 67 14 38 43
| | - C Clavel
- Supramolecular Machines and Architectures Team , Faculté des Sciences , Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS , Université Montpellier , ENSCM , case courrier 1706, Bâtiment Chimie (17), 3ème étage, Place Eugène Bataillon , 34095 Montpellier cedex 5 , France . ; http://www.glycorotaxane.fr ; ; Tel: +33 4 67 14 38 43
| | - K Fournel-Marotte
- Supramolecular Machines and Architectures Team , Faculté des Sciences , Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS , Université Montpellier , ENSCM , case courrier 1706, Bâtiment Chimie (17), 3ème étage, Place Eugène Bataillon , 34095 Montpellier cedex 5 , France . ; http://www.glycorotaxane.fr ; ; Tel: +33 4 67 14 38 43
| | - F Coutrot
- Supramolecular Machines and Architectures Team , Faculté des Sciences , Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS , Université Montpellier , ENSCM , case courrier 1706, Bâtiment Chimie (17), 3ème étage, Place Eugène Bataillon , 34095 Montpellier cedex 5 , France . ; http://www.glycorotaxane.fr ; ; Tel: +33 4 67 14 38 43
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183
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Meng Z, Han Y, Wang LN, Xiang JF, He SG, Chen CF. Stepwise Motion in a Multivalent [2](3)Catenane. J Am Chem Soc 2015; 137:9739-45. [DOI: 10.1021/jacs.5b05758] [Citation(s) in RCA: 86] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Zheng Meng
- Beijing
National Laboratory for Molecular Sciences, CAS Key Laboratory of
Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ying Han
- Beijing
National Laboratory for Molecular Sciences, CAS Key Laboratory of
Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Li-Na Wang
- Institute
of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Jun-Feng Xiang
- Institute
of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Sheng-Gui He
- Institute
of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Chuan-Feng Chen
- Beijing
National Laboratory for Molecular Sciences, CAS Key Laboratory of
Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
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184
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Li SH, Zhang HY, Xu X, Liu Y. Mechanically selflocked chiral gemini-catenanes. Nat Commun 2015; 6:7590. [PMID: 26126502 PMCID: PMC4506498 DOI: 10.1038/ncomms8590] [Citation(s) in RCA: 145] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2014] [Accepted: 05/22/2015] [Indexed: 12/22/2022] Open
Abstract
Mechanically interlocked and entangled molecular architectures represent one of the elaborate topological superstructures engineered at a molecular resolution. Here we report a methodology for fabricating mechanically selflocked molecules (MSMs) through highly efficient one-step amidation of a pseudorotaxane derived from dual functionalized pillar[5]arene (P[5]A) threaded by α,ω-diaminoalkane (DA-n; n=3-12). The monomeric and dimeric pseudo[1]catenanes thus obtained, which are inherently chiral due to the topology of P[5]A used, were isolated and fully characterized by NMR and circular dichroism spectroscopy, X-ray crystallography and DFT calculations. Of particular interest, the dimeric pseudo[1]catenane, named 'gemini-catenane', contained stereoisomeric meso-erythro and dl-threo isomers, in which two P[5]A moieties are threaded by two DA-n chains in topologically different patterns. This access to chiral pseudo[1]catenanes and gemini-catenanes will greatly promote the practical use of such sophisticated chiral architectures in supramolecular and materials science and technology.
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Affiliation(s)
- Sheng-Hua Li
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Nankai University, Tianjin 300071, China
| | - Heng-Yi Zhang
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Nankai University, Tianjin 300071, China
| | - Xiufang Xu
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Nankai University, Tianjin 300071, China
| | - Yu Liu
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Nankai University, Tianjin 300071, China
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185
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Giri C, Topić F, Cametti M, Rissanen K. Mixed valence mono- and hetero-metallic grid catenanes. Chem Sci 2015; 6:5712-5718. [PMID: 28757953 PMCID: PMC5512231 DOI: 10.1039/c5sc01851j] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2015] [Accepted: 06/29/2015] [Indexed: 12/12/2022] Open
Abstract
Here, we report on the multicomponent self-assembly and single crystal X-ray diffraction study of a series of three interlocked mixed valence mono- and hetero-metallic [2]-catenanes made of [2 × 2] metallo-grids. They show unique structural features and highlight the essential roles of both the Cu(ii)/Cu(i) pair and of the conformationally adaptable organic ligands for achieving catenation of grids.
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Affiliation(s)
- Chandan Giri
- University of Jyvaskyla , Department of Chemistry , Nanoscience Center , P. O. Box. 35, FI-40014 University of Jyvaskyla , Finland .
| | - Filip Topić
- University of Jyvaskyla , Department of Chemistry , Nanoscience Center , P. O. Box. 35, FI-40014 University of Jyvaskyla , Finland .
| | - Massimo Cametti
- Department of Chemistry , Materials and Chemical Engineering "Giulio Natta" , Politecnico di Milano , Via L. Mancinelli 7 , 20131 Milano , Italy .
| | - Kari Rissanen
- University of Jyvaskyla , Department of Chemistry , Nanoscience Center , P. O. Box. 35, FI-40014 University of Jyvaskyla , Finland .
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186
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Kuo TY, Tseng WH, Chen CH. Force Spectroscopy of Metal-Crown Ether Multivalency: Effect of Local Environments on Energy Landscape and Sensing Kinetics. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201503948] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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187
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Kuo TY, Tseng WH, Chen CH. Force Spectroscopy of Metal-Crown Ether Multivalency: Effect of Local Environments on Energy Landscape and Sensing Kinetics. Angew Chem Int Ed Engl 2015; 54:9213-7. [DOI: 10.1002/anie.201503948] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2015] [Indexed: 11/09/2022]
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188
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Sun J, Wu Y, Liu Z, Cao D, Wang Y, Cheng C, Chen D, Wasielewski MR, Stoddart JF. Visible Light-Driven Artificial Molecular Switch Actuated by Radical–Radical and Donor–Acceptor Interactions. J Phys Chem A 2015; 119:6317-25. [DOI: 10.1021/acs.jpca.5b04570] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Junling Sun
- Department
of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
| | - Yilei Wu
- Department
of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
- Argonne-Northwestern
Solar Energy Research (ANSER) Center, Northwestern University, 2145 Sheridan
Road, Evanston, Illinois 60208-3113, United States
| | - Zhichang Liu
- Department
of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
| | - Dennis Cao
- Department
of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
| | - Yuping Wang
- Department
of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
| | - Chuyang Cheng
- Department
of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
| | - Dongyang Chen
- Department
of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
| | - Michael R. Wasielewski
- Department
of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
- Argonne-Northwestern
Solar Energy Research (ANSER) Center, Northwestern University, 2145 Sheridan
Road, Evanston, Illinois 60208-3113, United States
| | - J. Fraser Stoddart
- Department
of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
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189
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Langton MJ, Beer PD. Nitrate anion templated synthesis of a [2]catenane for nitrate recognition in organic-aqueous solvent media. Chem Commun (Camb) 2015; 50:8124-7. [PMID: 24926915 DOI: 10.1039/c4cc03200d] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The first example of a catenane synthesised using a nitrate anion template is demonstrated. Removal of the templating anion reveals a mechanically interlocked molecular host system which is capable of recognising nitrate selectively over a range of more basic mono-anionic oxoanions in a competitive organic-aqueous solvent mixture.
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Affiliation(s)
- Matthew J Langton
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, Mansfield Road, Oxford, OX1 3TA, UK.
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190
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Martinez-Cuezva A, Pastor A, Cioncoloni G, Orenes RA, Alajarin M, Symes MD, Berna J. Versatile control of the submolecular motion of di(acylamino)pyridine-based [2]rotaxanes. Chem Sci 2015; 6:3087-3094. [PMID: 28706682 PMCID: PMC5490047 DOI: 10.1039/c5sc00790a] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Accepted: 03/18/2015] [Indexed: 11/21/2022] Open
Abstract
A cyclic network of chemical reactions has been conceived for exchanging the dynamic behaviour of di(acylamino)pyridine-based rotaxanes and surrogates. X-ray diffraction studies revealed the intercomponent interactions in these interlocked compounds and were consistent with those found in solution by dynamic NMR experiments. This particular binding site was incorporated into a molecular shuttle enabled for accessing two states with an outstanding positional discrimination through chemical manipulation. Furthermore, the ability of the di(acylamino)pyridine domain to associate with external binders with a complementary array of HB donor and acceptor sites was exploited for the advance of an unprecedented electrochemical switch operating through a reversible anion radical recognition process.
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Affiliation(s)
- Alberto Martinez-Cuezva
- Departamento de Química Orgánica , Facultad de Química , Regional Campus of International Excellence "Campus Mare Nostrum" , Universidad de Murcia , E-30100 , Murcia , Spain .
| | - Aurelia Pastor
- Departamento de Química Orgánica , Facultad de Química , Regional Campus of International Excellence "Campus Mare Nostrum" , Universidad de Murcia , E-30100 , Murcia , Spain .
| | - Giacomo Cioncoloni
- WestCHEM , School of Chemistry , University of Glasgow , University Avenue , Glasgow G12 8QQ , UK
| | | | - Mateo Alajarin
- Departamento de Química Orgánica , Facultad de Química , Regional Campus of International Excellence "Campus Mare Nostrum" , Universidad de Murcia , E-30100 , Murcia , Spain .
| | - Mark D Symes
- WestCHEM , School of Chemistry , University of Glasgow , University Avenue , Glasgow G12 8QQ , UK
| | - Jose Berna
- Departamento de Química Orgánica , Facultad de Química , Regional Campus of International Excellence "Campus Mare Nostrum" , Universidad de Murcia , E-30100 , Murcia , Spain .
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191
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DONG HUAZE, FENG XIAOJUN, LIU XIA, ZHENG BIN, BI JIANHONG, XUE YAN, GOU SHAOHUA, WANG YANPING. Supramolecular structures constructed from three novel rare earth metal complexes. J CHEM SCI 2015. [DOI: 10.1007/s12039-015-0840-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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192
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McConnell AJ, Wood CS, Neelakandan PP, Nitschke JR. Stimuli-Responsive Metal–Ligand Assemblies. Chem Rev 2015; 115:7729-93. [DOI: 10.1021/cr500632f] [Citation(s) in RCA: 759] [Impact Index Per Article: 75.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Anna J. McConnell
- Department of Chemistry, University of Cambridge, Lensfield
Road, Cambridge CB2 1EW, United Kingdom
| | - Christopher S. Wood
- Department of Chemistry, University of Cambridge, Lensfield
Road, Cambridge CB2 1EW, United Kingdom
| | - Prakash P. Neelakandan
- Department of Chemistry, University of Cambridge, Lensfield
Road, Cambridge CB2 1EW, United Kingdom
| | - Jonathan R. Nitschke
- Department of Chemistry, University of Cambridge, Lensfield
Road, Cambridge CB2 1EW, United Kingdom
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193
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Bleve V, Schäfer C, Franchi P, Silvi S, Mezzina E, Credi A, Lucarini M. Reversible mechanical switching of magnetic interactions in a molecular shuttle. ChemistryOpen 2015; 4:18-21. [PMID: 25861565 PMCID: PMC4380948 DOI: 10.1002/open.201402073] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2014] [Indexed: 12/03/2022] Open
Abstract
An acid–base switchable molecular shuttle based on a [2]rotaxane, incorporating stable radical units in both the ring and dumbbell components, is reported. The [2]rotaxane comprises a dibenzo[24]crown-8 ring (DB24C8) interlocked with a dumbbell component that possesses a dialkylammonium (NH2+) and a 4,4′-bipyridinium (BPY2+) recognition site. Deprotonation of the rotaxane NH2+ centers effects a quantitative displacement of the DB24C8 macroring to the BPY2+ recognition site, a process that can be reversed by acid treatment. Interaction between stable 2,2,6,6-tetramethylpiperidine-1-oxyl (TEMPO) radicals connected to the ring and dumbbell components could be switched between noncoupled (three-line electron paramagnetic resonance (EPR) spectrum) and coupled (five-line EPR spectrum) upon displacement of the spin-labelled DB24C8 macroring. The complete base- and acid-induced switching cycle of the EPR pattern was repeated six times without an appreciable loss of signal, highlighting the reversibility of the process. Hence, this molecular machine is capable of switching on/off magnetic interactions by chemically driven reversible mechanical effects. A system of this kind represents an initial step towards a new generation of nanoscale magnetic switches that may be of interest for a variety of applications.
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Affiliation(s)
- Valentina Bleve
- Dipartimento di Chimica "G. Ciamician", Università di Bologna Via Selmi 2, 40126 Bologna (Italy)
| | - Christian Schäfer
- Dipartimento di Chimica "G. Ciamician", Università di Bologna Via Selmi 2, 40126 Bologna (Italy)
| | - Paola Franchi
- Dipartimento di Chimica "G. Ciamician", Università di Bologna Via Selmi 2, 40126 Bologna (Italy)
| | - Serena Silvi
- Dipartimento di Chimica "G. Ciamician", Università di Bologna Via Selmi 2, 40126 Bologna (Italy)
| | - Elisabetta Mezzina
- Dipartimento di Chimica "G. Ciamician", Università di Bologna Via Selmi 2, 40126 Bologna (Italy)
| | - Alberto Credi
- Dipartimento di Chimica "G. Ciamician", Università di Bologna Via Selmi 2, 40126 Bologna (Italy)
| | - Marco Lucarini
- Dipartimento di Chimica "G. Ciamician", Università di Bologna Via Selmi 2, 40126 Bologna (Italy)
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194
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Wood CS, Ronson TK, Belenguer AM, Holstein JJ, Nitschke JR. Two-stage directed self-assembly of a cyclic [3]catenane. Nat Chem 2015; 7:354-8. [DOI: 10.1038/nchem.2205] [Citation(s) in RCA: 154] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2014] [Accepted: 02/13/2015] [Indexed: 12/25/2022]
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195
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Ogawa M, Nagashima M, Sogawa H, Kuwata S, Takata T. Synthesis and Cavity Size Effect of Pd-Containing Macrocycle Catalyst for Efficient Intramolecular Hydroamination of Allylurethane. Org Lett 2015; 17:1664-7. [DOI: 10.1021/acs.orglett.5b00378] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | | | | | | | - Toshikazu Takata
- Advanced Catalytic Transformation for Carbon Utilization (ACT-C), JST, O-okayama, Meguro-ku, Tokyo 152-8552, Japan
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196
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Ligand-Directed Molecular Architectures: Self-Assembly of Five [2+2] Metallacycles from Bis(4-(pyridin-2-yl)pyrimidin-2-ylthio)propane. J Inorg Organomet Polym Mater 2015. [DOI: 10.1007/s10904-015-0186-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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197
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Barat R, Legigan T, Tranoy-Opalinski I, Renoux B, Péraudeau E, Clarhaut J, Poinot P, Fernandes AE, Aucagne V, Leigh DA, Papot S. A mechanically interlocked molecular system programmed for the delivery of an anticancer drug. Chem Sci 2015; 6:2608-2613. [PMID: 29308165 PMCID: PMC5649224 DOI: 10.1039/c5sc00648a] [Citation(s) in RCA: 109] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2015] [Accepted: 02/23/2015] [Indexed: 11/21/2022] Open
Abstract
The development of mechanically interlocked molecular systems programmed to operate autonomously in biological environments is an emerging field of research with potential medicinal applications.
The development of mechanically interlocked molecular systems programmed to operate autonomously in biological environments is an emerging field of research with potential medicinal applications. Within this framework, functional rotaxane- and pseudorotaxane-based architectures are starting to attract interest for the delivery of anticancer drugs, with the ultimate goal to improve the efficiency of cancer chemotherapy. Here, we report an enzyme-sensitive [2]-rotaxane designed to release a potent anticancer drug within tumor cells. The molecular device includes a protective ring that prevents the premature liberation of the drug in plasma. However, once located inside cancer cells the [2]-rotaxane leads to the release of the drug through the controlled disassembly of the mechanically interlocked components, in response to a determined sequence of two distinct enzymatic activations. Furthermore, in vitro biological evaluations reveal that this biocompatible functional system exhibits a noticeable level of selectivity for cancer cells overexpressing β-galactosidase.
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Affiliation(s)
- Romain Barat
- Université de Poitiers , UMR-CNRS 7285 , Institut de Chimie des Milieux et des Matériaux de Poitiers , groupe « Systèmes Moléculaires Programmés » , 4 rue Michel Brunet, TSA 51106 , 86073 Poitiers , France .
| | - Thibaut Legigan
- Université de Poitiers , UMR-CNRS 7285 , Institut de Chimie des Milieux et des Matériaux de Poitiers , groupe « Systèmes Moléculaires Programmés » , 4 rue Michel Brunet, TSA 51106 , 86073 Poitiers , France .
| | - Isabelle Tranoy-Opalinski
- Université de Poitiers , UMR-CNRS 7285 , Institut de Chimie des Milieux et des Matériaux de Poitiers , groupe « Systèmes Moléculaires Programmés » , 4 rue Michel Brunet, TSA 51106 , 86073 Poitiers , France .
| | - Brigitte Renoux
- Université de Poitiers , UMR-CNRS 7285 , Institut de Chimie des Milieux et des Matériaux de Poitiers , groupe « Systèmes Moléculaires Programmés » , 4 rue Michel Brunet, TSA 51106 , 86073 Poitiers , France .
| | - Elodie Péraudeau
- Université de Poitiers , CNRS ERL 7368 , 1 rue Georges Bonnet, TSA 51106 , 86073 Poitiers , France.,CHU de Poitiers , 2 rue de la Milétrie, CS 90577 , 86021 Poitiers , France
| | - Jonathan Clarhaut
- Université de Poitiers , UMR-CNRS 7285 , Institut de Chimie des Milieux et des Matériaux de Poitiers , groupe « Systèmes Moléculaires Programmés » , 4 rue Michel Brunet, TSA 51106 , 86073 Poitiers , France . .,CHU de Poitiers , 2 rue de la Milétrie, CS 90577 , 86021 Poitiers , France
| | - Pauline Poinot
- Université de Poitiers , UMR-CNRS 7285 , Institut de Chimie des Milieux et des Matériaux de Poitiers , Equipe Eau, Géochimie Organique, Santé (EGS) , 4 rue Michel Brunet, TSA 51106 , 86073 Poitiers , France
| | - Antony E Fernandes
- Institute of Condensed Matter and Nanoscience , Université catholique de Louvain , place Croix du Sud , 1348 Louvain-la-Neuve , Belgium
| | - Vincent Aucagne
- Centre de Biophysique Moléculaire , CNRS , rue Charles Sadron , 45071 Orléans Cedex 2 , France
| | - David A Leigh
- School of Chemistry University of Manchester , Oxford road , Manchester MP13 9PL , UK
| | - Sébastien Papot
- Université de Poitiers , UMR-CNRS 7285 , Institut de Chimie des Milieux et des Matériaux de Poitiers , groupe « Systèmes Moléculaires Programmés » , 4 rue Michel Brunet, TSA 51106 , 86073 Poitiers , France .
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198
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Qu DH, Wang QC, Zhang QW, Ma X, Tian H. Photoresponsive Host–Guest Functional Systems. Chem Rev 2015; 115:7543-88. [DOI: 10.1021/cr5006342] [Citation(s) in RCA: 622] [Impact Index Per Article: 62.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Da-Hui Qu
- Key Laboratory for Advanced Materials & Institute of Fine Chemicals, East China University of Science & Technology, Meilong Road 130, Shanghai 200237, P. R. China
| | - Qiao-Chun Wang
- Key Laboratory for Advanced Materials & Institute of Fine Chemicals, East China University of Science & Technology, Meilong Road 130, Shanghai 200237, P. R. China
| | - Qi-Wei Zhang
- Key Laboratory for Advanced Materials & Institute of Fine Chemicals, East China University of Science & Technology, Meilong Road 130, Shanghai 200237, P. R. China
| | - Xiang Ma
- Key Laboratory for Advanced Materials & Institute of Fine Chemicals, East China University of Science & Technology, Meilong Road 130, Shanghai 200237, P. R. China
| | - He Tian
- Key Laboratory for Advanced Materials & Institute of Fine Chemicals, East China University of Science & Technology, Meilong Road 130, Shanghai 200237, P. R. China
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199
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Mezzina E, Manoni R, Romano F, Lucarini M. Spin-Labelling of Host-Guest Assemblies with Nitroxide Radicals. ASIAN J ORG CHEM 2015. [DOI: 10.1002/ajoc.201402286] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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200
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Schmittel M, De S, Pramanik S. Redox-dependent self-sorting toggles a rotary nanoswitch. Org Biomol Chem 2015. [DOI: 10.1039/c5ob01041a] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
The pyridine–pyrimidine (py–pym) arm as the moving part of the two-state nanomechanical rotary switch [Cu(1)]+ is toggled reversibly between two stations using one-electron oxidation/reduction.
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Affiliation(s)
- Michael Schmittel
- Center of Micro and Nanochemistry and Engineering
- Organische Chemie I
- Universität Siegen
- D-57068 Siegen
- Germany
| | - Soumen De
- Center of Micro and Nanochemistry and Engineering
- Organische Chemie I
- Universität Siegen
- D-57068 Siegen
- Germany
| | - Susnata Pramanik
- Center of Micro and Nanochemistry and Engineering
- Organische Chemie I
- Universität Siegen
- D-57068 Siegen
- Germany
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