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For: Lynch M. Streamlining and simplification of microbial genome architecture. Annu Rev Microbiol 2006;60:327-49. [PMID: 16824010 DOI: 10.1146/annurev.micro.60.080805.142300] [Citation(s) in RCA: 176] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Number Cited by Other Article(s)
151
Plague GR. Intergenic transposable elements are not randomly distributed in bacteria. Genome Biol Evol 2010;2:584-90. [PMID: 20697140 PMCID: PMC2942039 DOI: 10.1093/gbe/evq040] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/03/2010] [Indexed: 12/04/2022]  Open
152
Koonin EV, Wolf YI. Constraints and plasticity in genome and molecular-phenome evolution. Nat Rev Genet 2010;11:487-98. [PMID: 20548290 PMCID: PMC3273317 DOI: 10.1038/nrg2810] [Citation(s) in RCA: 109] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
153
Hessen DO, Jeyasingh PD, Neiman M, Weider LJ. Genome streamlining in prokaryotes versus eukaryotes. Trends Ecol Evol 2010. [DOI: 10.1016/j.tree.2010.03.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
154
Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: selection vs. retroprocessing as the driving force. Genetics 2010;185:1369-80. [PMID: 20479143 DOI: 10.1534/genetics.110.118000] [Citation(s) in RCA: 85] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
155
Smith DR, Lee RW. Low nucleotide diversity for the expanded organelle and nuclear genomes of Volvox carteri supports the mutational-hazard hypothesis. Mol Biol Evol 2010;27:2244-56. [PMID: 20430860 DOI: 10.1093/molbev/msq110] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
156
Ballouz S, Francis AR, Lan R, Tanaka MM. Conditions for the evolution of gene clusters in bacterial genomes. PLoS Comput Biol 2010;6:e1000672. [PMID: 20168992 PMCID: PMC2820515 DOI: 10.1371/journal.pcbi.1000672] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2009] [Accepted: 01/07/2010] [Indexed: 11/18/2022]  Open
157
Genome streamlining and the elemental costs of growth. Trends Ecol Evol 2010;25:75-80. [DOI: 10.1016/j.tree.2009.08.004] [Citation(s) in RCA: 108] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2009] [Revised: 08/07/2009] [Accepted: 08/12/2009] [Indexed: 11/18/2022]
158
McMurdie PJ, Behrens SF, Müller JA, Göke J, Ritalahti KM, Wagner R, Goltsman E, Lapidus A, Holmes S, Löffler FE, Spormann AM. Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PLoS Genet 2009;5:e1000714. [PMID: 19893622 PMCID: PMC2764846 DOI: 10.1371/journal.pgen.1000714] [Citation(s) in RCA: 138] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2009] [Accepted: 10/08/2009] [Indexed: 11/18/2022]  Open
159
Isambert H, Stein RR. On the need for widespread horizontal gene transfers under genome size constraint. Biol Direct 2009;4:28. [PMID: 19703318 PMCID: PMC2740843 DOI: 10.1186/1745-6150-4-28] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2009] [Accepted: 08/25/2009] [Indexed: 11/20/2022]  Open
160
Csurös M, Miklós I. Streamlining and large ancestral genomes in Archaea inferred with a phylogenetic birth-and-death model. Mol Biol Evol 2009;26:2087-95. [PMID: 19570746 PMCID: PMC2726834 DOI: 10.1093/molbev/msp123] [Citation(s) in RCA: 98] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
161
Kuo CH, Ochman H. Deletional bias across the three domains of life. Genome Biol Evol 2009;1:145-52. [PMID: 20333185 PMCID: PMC2817411 DOI: 10.1093/gbe/evp016] [Citation(s) in RCA: 145] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/20/2009] [Indexed: 11/25/2022]  Open
162
Kuo CH, Moran NA, Ochman H. The consequences of genetic drift for bacterial genome complexity. Genome Res 2009;19:1450-4. [PMID: 19502381 DOI: 10.1101/gr.091785.109] [Citation(s) in RCA: 200] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
163
Pettersson ME, Kurland CG, Berg OG. Deletion rate evolution and its effect on genome size and coding density. Mol Biol Evol 2009;26:1421-30. [PMID: 19295120 DOI: 10.1093/molbev/msp054] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
164
Webb EA, Ehrenreich IM, Brown SL, Valois FW, Waterbury JB. Phenotypic and genotypic characterization of multiple strains of the diazotrophic cyanobacterium, Crocosphaera watsonii, isolated from the open ocean. Environ Microbiol 2009;11:338-48. [PMID: 19196268 DOI: 10.1111/j.1462-2920.2008.01771.x] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
165
Pérez-Rueda E, Janga SC, Martínez-Antonio A. Scaling relationship in the gene content of transcriptional machinery in bacteria. MOLECULAR BIOSYSTEMS 2009;5:1494-501. [DOI: 10.1039/b907384a] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
166
Ecological specialization in a spatially structured population of the thermophilic cyanobacterium Mastigocladus laminosus. Appl Environ Microbiol 2008;75:729-34. [PMID: 19047382 DOI: 10.1128/aem.01901-08] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
167
Catania F, Wurmser F, Potekhin AA, Przybos E, Lynch M. Genetic diversity in the Paramecium aurelia species complex. Mol Biol Evol 2008;26:421-31. [PMID: 19023087 DOI: 10.1093/molbev/msn266] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
168
Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. J Bacteriol 2008;191:65-73. [PMID: 18978059 DOI: 10.1128/jb.01237-08] [Citation(s) in RCA: 101] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
169
Koonin EV, Wolf YI. Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world. Nucleic Acids Res 2008;36:6688-719. [PMID: 18948295 PMCID: PMC2588523 DOI: 10.1093/nar/gkn668] [Citation(s) in RCA: 480] [Impact Index Per Article: 28.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
170
Giovannoni SJ, Hayakawa DH, Tripp HJ, Stingl U, Givan SA, Cho JC, Oh HM, Kitner JB, Vergin KL, Rappé MS. The small genome of an abundant coastal ocean methylotroph. Environ Microbiol 2008;10:1771-82. [DOI: 10.1111/j.1462-2920.2008.01598.x] [Citation(s) in RCA: 156] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
171
Gregory TR, Witt JDS. Population size and genome size in fishes: a closer look. Genome 2008;51:309-13. [PMID: 18356967 DOI: 10.1139/g08-003] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
172
Nucleotide diversity in the mitochondrial and nuclear compartments of Chlamydomonas reinhardtii: investigating the origins of genome architecture. BMC Evol Biol 2008;8:156. [PMID: 18495022 PMCID: PMC2412866 DOI: 10.1186/1471-2148-8-156] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2008] [Accepted: 05/21/2008] [Indexed: 12/03/2022]  Open
173
Arp DJ, Chain PSG, Klotz MG. The impact of genome analyses on our understanding of ammonia-oxidizing bacteria. Annu Rev Microbiol 2007;61:503-28. [PMID: 17506671 DOI: 10.1146/annurev.micro.61.080706.093449] [Citation(s) in RCA: 119] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
174
Balbi KJ, Feil EJ. The rise and fall of deleterious mutation. Res Microbiol 2007;158:779-86. [PMID: 17988836 DOI: 10.1016/j.resmic.2007.09.005] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2007] [Revised: 09/20/2007] [Accepted: 09/20/2007] [Indexed: 11/30/2022]
175
Toro N, Jiménez-Zurdo JI, García-Rodríguez FM. Bacterial group II introns: not just splicing. FEMS Microbiol Rev 2007;31:342-58. [PMID: 17374133 DOI: 10.1111/j.1574-6976.2007.00068.x] [Citation(s) in RCA: 87] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
176
Popescu CE, Lee RW. Mitochondrial genome sequence evolution in Chlamydomonas. Genetics 2006;175:819-26. [PMID: 17151253 PMCID: PMC1800605 DOI: 10.1534/genetics.106.063156] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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