• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5080261)   Today's Articles (5074)
For:  [Subscribe] [Scholar Register]
Number Cited by Other Article(s)
201
Fonseca E, Machado AM, Vilas-Arrondo N, Gomes-Dos-Santos A, Veríssimo A, Esteves P, Almeida T, Themudo G, Ruivo R, Pérez M, da Fonseca R, Santos MM, Froufe E, Román-Marcote E, Venkatesh B, Castro LFC. Cartilaginous fishes offer unique insights into the evolution of the nuclear receptor gene repertoire in gnathostomes. Gen Comp Endocrinol 2020;295:113527. [PMID: 32526329 DOI: 10.1016/j.ygcen.2020.113527] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Revised: 05/15/2020] [Accepted: 06/03/2020] [Indexed: 12/12/2022]
202
Fouret J, Brunet FG, Binet M, Aurine N, Enchéry F, Croze S, Guinier M, Goumaidi A, Preininger D, Volff JN, Bailly-Bechet M, Lachuer J, Horvat B, Legras-Lachuer C. Sequencing the Genome of Indian Flying Fox, Natural Reservoir of Nipah Virus, Using Hybrid Assembly and Conservative Secondary Scaffolding. Front Microbiol 2020;11:1807. [PMID: 32849415 PMCID: PMC7403528 DOI: 10.3389/fmicb.2020.01807] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 07/09/2020] [Indexed: 11/20/2022]  Open
203
Miyauchi E, Kim SW, Suda W, Kawasumi M, Onawa S, Taguchi-Atarashi N, Morita H, Taylor TD, Hattori M, Ohno H. Gut microorganisms act together to exacerbate inflammation in spinal cords. Nature 2020;585:102-106. [PMID: 32848245 DOI: 10.1038/s41586-020-2634-9] [Citation(s) in RCA: 166] [Impact Index Per Article: 33.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2019] [Accepted: 05/22/2020] [Indexed: 01/09/2023]
204
Gavriilidou A, Gutleben J, Versluis D, Forgiarini F, van Passel MWJ, Ingham CJ, Smidt H, Sipkema D. Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis. BMC Genomics 2020;21:569. [PMID: 32819293 PMCID: PMC7440613 DOI: 10.1186/s12864-020-06971-7] [Citation(s) in RCA: 68] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Accepted: 08/05/2020] [Indexed: 01/24/2023]  Open
205
Pérez-Cobas AE, Gomez-Valero L, Buchrieser C. Metagenomic approaches in microbial ecology: an update on whole-genome and marker gene sequencing analyses. Microb Genom 2020;6:mgen000409. [PMID: 32706331 PMCID: PMC7641418 DOI: 10.1099/mgen.0.000409] [Citation(s) in RCA: 71] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Accepted: 06/30/2020] [Indexed: 12/23/2022]  Open
206
Chen M, Wang B, Lu G, Zhong Z, Wang Z. Genome Sequence Resource of Magnaporthe oryzae Laboratory Strain 2539. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2020;33:1029-1031. [PMID: 32343629 DOI: 10.1094/mpmi-02-20-0036-a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
207
Optimization of the culture conditions for production of Polyhydroxyalkanoate and its characterization from a new Bacillus cereus sp. BNPI-92 strain, isolated from plastic waste dumping yard. Int J Biol Macromol 2020;156:1064-1080. [DOI: 10.1016/j.ijbiomac.2019.11.138] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Revised: 11/16/2019] [Accepted: 11/17/2019] [Indexed: 11/20/2022]
208
Deblasio D, Kim K, Kingsford C. More Accurate Transcript Assembly via Parameter Advising. J Comput Biol 2020;27:1181-1189. [PMID: 32315544 PMCID: PMC7415876 DOI: 10.1089/cmb.2019.0286] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
209
Steenwyk JL, Lind AL, Ries LNA, Dos Reis TF, Silva LP, Almeida F, Bastos RW, Fraga da Silva TFDC, Bonato VLD, Pessoni AM, Rodrigues F, Raja HA, Knowles SL, Oberlies NH, Lagrou K, Goldman GH, Rokas A. Pathogenic Allodiploid Hybrids of Aspergillus Fungi. Curr Biol 2020;30:2495-2507.e7. [PMID: 32502407 PMCID: PMC7343619 DOI: 10.1016/j.cub.2020.04.071] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2019] [Revised: 02/25/2020] [Accepted: 04/24/2020] [Indexed: 12/12/2022]
210
Yan WJ, Liu H, Yang TG, Liao R, Qin R. Complete chloroplast genome sequence of Chrysosplenium ramosum and Chrysosplenium alternifolium (Saxifragaceae). Mitochondrial DNA B Resour 2020;5:2837-2838. [PMID: 33553626 PMCID: PMC7850371 DOI: 10.1080/23802359.2020.1790313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]  Open
211
Stohr JJ, Kluytmans-van den Bergh MF, Wedema R, Friedrich AW, Kluytmans JA, Rossen JW. Detection of extended-spectrum beta-lactamase (ESBL) genes and plasmid replicons in Enterobacteriaceae using PlasmidSPAdes assembly of short-read sequence data. Microb Genom 2020;6:mgen000400. [PMID: 32589571 PMCID: PMC7478632 DOI: 10.1099/mgen.0.000400] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Accepted: 06/04/2020] [Indexed: 01/11/2023]  Open
212
Bohr LL, Mortimer TD, Pepperell CS. Lateral Gene Transfer Shapes Diversity of Gardnerella spp. Front Cell Infect Microbiol 2020;10:293. [PMID: 32656099 PMCID: PMC7324480 DOI: 10.3389/fcimb.2020.00293] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Accepted: 05/18/2020] [Indexed: 12/13/2022]  Open
213
The Basis for Natural Multiresistance to Phage in Pseudomonas aeruginosa. Antibiotics (Basel) 2020;9:antibiotics9060339. [PMID: 32570896 PMCID: PMC7344871 DOI: 10.3390/antibiotics9060339] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Revised: 06/01/2020] [Accepted: 06/16/2020] [Indexed: 01/21/2023]  Open
214
Using genetic markers to identify the origin of illegally traded agarwood-producing Aquilaria sinensis trees. Glob Ecol Conserv 2020. [DOI: 10.1016/j.gecco.2020.e00958] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
215
Jeffress S, Arun-Chinnappa K, Stodart B, Vaghefi N, Tan YP, Ash G. Genome mining of the citrus pathogen Elsinoë fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters. PLoS One 2020;15:e0227396. [PMID: 32469865 PMCID: PMC7259788 DOI: 10.1371/journal.pone.0227396] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Accepted: 04/17/2020] [Indexed: 11/22/2022]  Open
216
Hornung BVH, Kuijper EJ, Smits WK. An in silico survey of Clostridioides difficile extrachromosomal elements   . Microb Genom 2020;5. [PMID: 31526450 PMCID: PMC6807378 DOI: 10.1099/mgen.0.000296] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
217
Gallant J, Mouton J, Ummels R, Ten Hagen-Jongman C, Kriel N, Pain A, Warren RM, Bitter W, Heunis T, Sampson SL. Identification of gene fusion events in Mycobacterium tuberculosis that encode chimeric proteins. NAR Genom Bioinform 2020;2:lqaa033. [PMID: 33575588 PMCID: PMC7671302 DOI: 10.1093/nargab/lqaa033] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2020] [Revised: 04/16/2020] [Accepted: 05/05/2020] [Indexed: 02/07/2023]  Open
218
Liu Y, Sun J, Zhang M, Yang G, Wang R, Xu J, Li Q, Zhang S, Le W, Hao B, Li Y, Wu J. Identification of key genes related to seedlessness by genome-wide detection of structural variation and transcriptome analysis in 'Shijiwuhe' pear. Gene 2020;738:144480. [PMID: 32081696 DOI: 10.1016/j.gene.2020.144480] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2019] [Revised: 02/14/2020] [Accepted: 02/14/2020] [Indexed: 11/30/2022]
219
Li K, Lu Y, Deng L, Wang L, Shi L, Wang Z. Deconvolute individual genomes from metagenome sequences through short read clustering. PeerJ 2020;8:e8966. [PMID: 32296615 PMCID: PMC7150542 DOI: 10.7717/peerj.8966] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Accepted: 03/24/2020] [Indexed: 12/17/2022]  Open
220
López-Durán PA, Fonseca-Coronado S, Lozano-Trenado LM, Araujo-Betanzos S, Rugerio-Trujillo DA, Vaughan G, Saldaña-Rivera E. Nosocomial transmission of extensively drug resistant Acinetobacter baumannii strains in a tertiary level hospital. PLoS One 2020;15:e0231829. [PMID: 32302355 PMCID: PMC7164640 DOI: 10.1371/journal.pone.0231829] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Accepted: 04/01/2020] [Indexed: 12/12/2022]  Open
221
Louha S, Ray DA, Winker K, Glenn TC. A High-Quality Genome Assembly of the North American Song Sparrow, Melospiza melodia. G3 (BETHESDA, MD.) 2020;10:1159-1166. [PMID: 32075855 PMCID: PMC7144075 DOI: 10.1534/g3.119.400929] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/19/2019] [Accepted: 02/13/2020] [Indexed: 01/25/2023]
222
Ranallo-Benavidez TR, Jaron KS, Schatz MC. GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes. Nat Commun 2020;11:1432. [PMID: 32188846 PMCID: PMC7080791 DOI: 10.1038/s41467-020-14998-3] [Citation(s) in RCA: 864] [Impact Index Per Article: 172.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Accepted: 02/10/2020] [Indexed: 11/09/2022]  Open
223
Li Q, Ramasamy S, Singh P, Hagel JM, Dunemann SM, Chen X, Chen R, Yu L, Tucker JE, Facchini PJ, Yeaman S. Gene clustering and copy number variation in alkaloid metabolic pathways of opium poppy. Nat Commun 2020;11:1190. [PMID: 32132540 PMCID: PMC7055283 DOI: 10.1038/s41467-020-15040-2] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Accepted: 02/10/2020] [Indexed: 02/08/2023]  Open
224
Li CJ, Zhao D, Li BX, Zhang N, Yan JY, Zou HT. Whole genome sequencing and comparative genomic analysis of oleaginous red yeast Sporobolomyces pararoseus NGR identifies candidate genes for biotechnological potential and ballistospores-shooting. BMC Genomics 2020;21:181. [PMID: 32093624 PMCID: PMC7041287 DOI: 10.1186/s12864-020-6593-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2019] [Accepted: 02/19/2020] [Indexed: 11/12/2022]  Open
225
Thomas JC, Seby S, Abrams AJ, Cartee J, Lucking S, Vidyaprakash E, Schmerer M, Pham CD, Hong J, Torrone E, Cyr SS, Shafer WM, Bernstein K, Kersh EN, Gernert KM. Evidence of Recent Genomic Evolution in Gonococcal Strains With Decreased Susceptibility to Cephalosporins or Azithromycin in the United States, 2014-2016. J Infect Dis 2020;220:294-305. [PMID: 30788502 DOI: 10.1093/infdis/jiz079] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2018] [Accepted: 02/14/2019] [Indexed: 01/07/2023]  Open
226
Hardin A, Nevonen KA, Eckalbar WL, Carbone L, Ahituv N. Comparative Genomic Characterization of the Multimammate Mouse Mastomys coucha. Mol Biol Evol 2020;36:2805-2812. [PMID: 31424545 PMCID: PMC6878952 DOI: 10.1093/molbev/msz188] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
227
Genome Assembly and Analysis of the North American Mountain Goat (Oreamnos americanus) Reveals Species-Level Responses to Extreme Environments. G3-GENES GENOMES GENETICS 2020;10:437-442. [PMID: 31806764 PMCID: PMC7003085 DOI: 10.1534/g3.119.400747] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
228
Kotzamanidis C, Malousi A, Bitchava K, Vafeas G, Chatzidimitriou D, Skoura L, Papadimitriou E, Chatzopoulou F, Zdragas A. First Report of Isolation and Genome Sequence of L. petauri Strain from a Rainbow Trout Lactococcosis Outbreak. Curr Microbiol 2020;77:1089-1096. [PMID: 32008079 DOI: 10.1007/s00284-020-01905-8] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2019] [Accepted: 01/27/2020] [Indexed: 12/13/2022]
229
Yi L, Dalai M, Su R, Lin W, Erdenedalai M, Luvsantseren B, Chimedtseren C, Wang Z, Hasi S. Whole-genome sequencing of wild Siberian musk deer (Moschus moschiferus) provides insights into its genetic features. BMC Genomics 2020;21:108. [PMID: 32005147 PMCID: PMC6995116 DOI: 10.1186/s12864-020-6495-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2019] [Accepted: 01/14/2020] [Indexed: 12/20/2022]  Open
230
Arantes AL, Moreira JPC, Diender M, Parshina SN, Stams AJM, Alves MM, Alves JI, Sousa DZ. Enrichment of Anaerobic Syngas-Converting Communities and Isolation of a Novel Carboxydotrophic Acetobacterium wieringae Strain JM. Front Microbiol 2020;11:58. [PMID: 32082285 PMCID: PMC7006291 DOI: 10.3389/fmicb.2020.00058] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Accepted: 01/13/2020] [Indexed: 11/13/2022]  Open
231
Molina-Mora JA, Campos-Sánchez R, Rodríguez C, Shi L, García F. High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers. Sci Rep 2020;10:1392. [PMID: 31996747 PMCID: PMC6989561 DOI: 10.1038/s41598-020-58319-6] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Accepted: 01/06/2020] [Indexed: 12/14/2022]  Open
232
Draft Genome Sequences of Three Strains of Verticillium nonalfalfae Exhibiting Different Levels of Aggressiveness on Ailanthus altissima. Microbiol Resour Announc 2020;9:9/2/e01384-19. [PMID: 31919179 PMCID: PMC6952665 DOI: 10.1128/mra.01384-19] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
233
Organohalide-respiring Desulfoluna species isolated from marine environments. ISME JOURNAL 2020;14:815-827. [PMID: 31896791 PMCID: PMC7031245 DOI: 10.1038/s41396-019-0573-y] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Accepted: 12/16/2019] [Indexed: 12/17/2022]
234
Fu S, Chu R, Xu X, Chen H, Shi Y, Zhu S, Wei Z. The complete mitochondrial genome of a Chinese endemic species, Paraprenanthes diversifolia (Vaniot) N. Kilian (Cichorieae; Asteraceae). Mitochondrial DNA B Resour 2020;5:1098-1099. [PMID: 33366891 PMCID: PMC7748815 DOI: 10.1080/23802359.2020.1726220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]  Open
235
da Fonseca RR, Couto A, Machado AM, Brejova B, Albertin CB, Silva F, Gardner P, Baril T, Hayward A, Campos A, Ribeiro ÂM, Barrio-Hernandez I, Hoving HJ, Tafur-Jimenez R, Chu C, Frazão B, Petersen B, Peñaloza F, Musacchia F, Alexander GC, Osório H, Winkelmann I, Simakov O, Rasmussen S, Rahman MZ, Pisani D, Vinther J, Jarvis E, Zhang G, Strugnell JM, Castro LFC, Fedrigo O, Patricio M, Li Q, Rocha S, Antunes A, Wu Y, Ma B, Sanges R, Vinar T, Blagoev B, Sicheritz-Ponten T, Nielsen R, Gilbert MTP. A draft genome sequence of the elusive giant squid, Architeuthis dux. Gigascience 2020;9:giz152. [PMID: 31942620 PMCID: PMC6962438 DOI: 10.1093/gigascience/giz152] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Revised: 10/27/2019] [Accepted: 12/05/2019] [Indexed: 12/17/2022]  Open
236
Manni M, Simao FA, Robertson HM, Gabaglio MA, Waterhouse RM, Misof B, Niehuis O, Szucsich NU, Zdobnov EM. The Genome of the Blind Soil-Dwelling and Ancestrally Wingless Dipluran Campodea augens: A Key Reference Hexapod for Studying the Emergence of Insect Innovations. Genome Biol Evol 2020;12:3534-3549. [PMID: 31778187 PMCID: PMC6938034 DOI: 10.1093/gbe/evz260] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/26/2019] [Indexed: 12/13/2022]  Open
237
Pellegrina L, Pizzi C, Vandin F. Fast Approximation of Frequent k-Mers and Applications to Metagenomics. J Comput Biol 2019;27:534-549. [PMID: 31891535 DOI: 10.1089/cmb.2019.0314] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
238
Marchant DB, Sessa EB, Wolf PG, Heo K, Barbazuk WB, Soltis PS, Soltis DE. The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly. Sci Rep 2019;9:18181. [PMID: 31796775 PMCID: PMC6890710 DOI: 10.1038/s41598-019-53968-8] [Citation(s) in RCA: 61] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2019] [Accepted: 11/04/2019] [Indexed: 01/04/2023]  Open
239
Novel redox-active enzymes for ligninolytic applications revealed from multiomics analyses of Peniophora sp. CBMAI 1063, a laccase hyper-producer strain. Sci Rep 2019;9:17564. [PMID: 31772294 PMCID: PMC6879535 DOI: 10.1038/s41598-019-53608-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Accepted: 11/04/2019] [Indexed: 11/08/2022]  Open
240
Royo-Llonch M, Sánchez P, González JM, Pedrós-Alió C, Acinas SG. Ecological and functional capabilities of an uncultured Kordia sp. Syst Appl Microbiol 2019;43:126045. [PMID: 31831198 DOI: 10.1016/j.syapm.2019.126045] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2019] [Revised: 10/28/2019] [Accepted: 11/12/2019] [Indexed: 01/07/2023]
241
Jiang F, Zhang J, Wang S, Yang L, Luo Y, Gao S, Zhang M, Wu S, Hu S, Sun H, Wang Y. The apricot (Prunus armeniaca L.) genome elucidates Rosaceae evolution and beta-carotenoid synthesis. HORTICULTURE RESEARCH 2019;6:128. [PMID: 31754435 PMCID: PMC6861294 DOI: 10.1038/s41438-019-0215-6] [Citation(s) in RCA: 73] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2019] [Revised: 10/09/2019] [Accepted: 10/23/2019] [Indexed: 05/23/2023]
242
Athena: Automated Tuning of k-mer based Genomic Error Correction Algorithms using Language Models. Sci Rep 2019;9:16157. [PMID: 31695060 PMCID: PMC6834855 DOI: 10.1038/s41598-019-52196-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Accepted: 10/07/2019] [Indexed: 01/30/2023]  Open
243
Bastías A, Correa F, Rojas P, Martin C, Pérez-Diaz J, Yáñez C, Cuevas M, Verdugo R, Sagredo B. Draft genome sequence data of maqui (Aristotelia chilensis) and identification of SSR markers. Data Brief 2019;27:104545. [PMID: 31673575 PMCID: PMC6817651 DOI: 10.1016/j.dib.2019.104545] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2019] [Revised: 08/20/2019] [Accepted: 09/13/2019] [Indexed: 12/03/2022]  Open
244
Nunes R, Gonçalves AR, Pires de Campos Telles M. Data on the draft genome sequence of Caryocar brasiliense Camb. (Caryocaraceae): An important genetic resource from Brazilian savannas. Data Brief 2019;26:104543. [PMID: 31667304 PMCID: PMC6811913 DOI: 10.1016/j.dib.2019.104543] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2019] [Revised: 08/27/2019] [Accepted: 09/12/2019] [Indexed: 11/28/2022]  Open
245
Magnus representation of genome sequences. J Theor Biol 2019;480:104-111. [DOI: 10.1016/j.jtbi.2019.08.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Revised: 07/30/2019] [Accepted: 08/05/2019] [Indexed: 11/24/2022]
246
Svensson D, Sjögren R, Sundell D, Sjödin A, Trygg J. doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows. BMC Bioinformatics 2019;20:498. [PMID: 31615395 PMCID: PMC6794737 DOI: 10.1186/s12859-019-3091-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Accepted: 09/10/2019] [Indexed: 12/30/2022]  Open
247
Song B, Song Y, Fu Y, Kizito EB, Kamenya SN, Kabod PN, Liu H, Muthemba S, Kariba R, Njuguna J, Maina S, Stomeo F, Djikeng A, Hendre PS, Chen X, Chen W, Li X, Sun W, Wang S, Cheng S, Muchugi A, Jamnadass R, Shapiro HY, Van Deynze A, Yang H, Wang J, Xu X, Odeny DA, Liu X. Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome. Gigascience 2019;8:giz115. [PMID: 31574156 PMCID: PMC6771550 DOI: 10.1093/gigascience/giz115] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2019] [Revised: 07/14/2019] [Accepted: 08/24/2019] [Indexed: 12/04/2022]  Open
248
Martin SL, Parent JS, Laforest M, Page E, Kreiner JM, James T. Population Genomic Approaches for Weed Science. PLANTS (BASEL, SWITZERLAND) 2019;8:E354. [PMID: 31546893 PMCID: PMC6783936 DOI: 10.3390/plants8090354] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Revised: 09/12/2019] [Accepted: 09/14/2019] [Indexed: 12/16/2022]
249
Červenák F, Juríková K, Devillers H, Kaffe B, Khatib A, Bonnell E, Sopkovičová M, Wellinger RJ, Nosek J, Tzfati Y, Neuvéglise C, Tomáška Ľ. Identification of telomerase RNAs in species of the Yarrowia clade provides insights into the co-evolution of telomerase, telomeric repeats and telomere-binding proteins. Sci Rep 2019;9:13365. [PMID: 31527614 PMCID: PMC6746865 DOI: 10.1038/s41598-019-49628-6] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2019] [Accepted: 07/29/2019] [Indexed: 12/17/2022]  Open
250
Rowe WPM. When the levee breaks: a practical guide to sketching algorithms for processing the flood of genomic data. Genome Biol 2019;20:199. [PMID: 31519212 PMCID: PMC6744645 DOI: 10.1186/s13059-019-1809-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Accepted: 09/02/2019] [Indexed: 01/21/2023]  Open
PrevPage 5 of 10 12456910Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA