201
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Chen L, Lu G, Li Y, Li J, Tan M. Local Structure Preservation for Nonlinear Clustering. Neural Process Lett 2020. [DOI: 10.1007/s11063-020-10251-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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202
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Jin D, Qin Z, Yang M, Chen P. A Novel Neural Model With Lateral Interaction for Learning Tasks. Neural Comput 2020; 33:528-551. [PMID: 33253032 DOI: 10.1162/neco_a_01345] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
We propose a novel neural model with lateral interaction for learning tasks. The model consists of two functional fields: an elementary field to extract features and a high-level field to store and recognize patterns. Each field is composed of some neurons with lateral interaction, and the neurons in different fields are connected by the rules of synaptic plasticity. The model is established on the current research of cognition and neuroscience, making it more transparent and biologically explainable. Our proposed model is applied to data classification and clustering. The corresponding algorithms share similar processes without requiring any parameter tuning and optimization processes. Numerical experiments validate that the proposed model is feasible in different learning tasks and superior to some state-of-the-art methods, especially in small sample learning, one-shot learning, and clustering.
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Affiliation(s)
- Dequan Jin
- School of Mathematics and Information Science, Guangxi University, 530004, P.R.C.
| | - Ziyan Qin
- School of Mathematics and Information Science, Guangxi University, 530004, P.R.C.
| | - Murong Yang
- School of Mathematics and Information Science, Guangxi University, 530004, P.R.C.
| | - Penghe Chen
- School of Mathematics and Information Science, Guangxi University, 530004, P.R.C.
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203
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Predicting and Interpreting Students’ Grades in Distance Higher Education through a Semi-Regression Method. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10238413] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Multi-view learning is a machine learning app0roach aiming to exploit the knowledge retrieved from data, represented by multiple feature subsets known as views. Co-training is considered the most representative form of multi-view learning, a very effective semi-supervised classification algorithm for building highly accurate and robust predictive models. Even though it has been implemented in various scientific fields, it has not adequately used in educational data mining and learning analytics, since the hypothesis about the existence of two feature views cannot be easily implemented. Some notable studies have emerged recently dealing with semi-supervised classification tasks, such as student performance or student dropout prediction, while semi-supervised regression is uncharted territory. Therefore, the present study attempts to implement a semi-regression algorithm for predicting the grades of undergraduate students in the final exams of a one-year online course, which exploits three independent and naturally formed feature views, since they are derived from different sources. Moreover, we examine a well-established framework for interpreting the acquired results regarding their contribution to the final outcome per student/instance. To this purpose, a plethora of experiments is conducted based on data offered by the Hellenic Open University and representative machine learning algorithms. The experimental results demonstrate that the early prognosis of students at risk of failure can be accurately achieved compared to supervised models, even for a small amount of initially collected data from the first two semesters. The robustness of the applying semi-supervised regression scheme along with supervised learners and the investigation of features’ reasoning could highly benefit the educational domain.
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204
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Basomingera R, Choi YJ. Learning from Routing Information for Detecting Routing Misbehavior in Ad Hoc Networks. SENSORS 2020; 20:s20216275. [PMID: 33158143 PMCID: PMC7663644 DOI: 10.3390/s20216275] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/26/2020] [Revised: 10/26/2020] [Accepted: 11/02/2020] [Indexed: 11/16/2022]
Abstract
Owing to ad hoc wireless networks’ properties, the implementation of complex security systems with higher computing resources seems troublesome in most situations. Therefore, the usage of anomaly or intrusion detection systems has attracted considerable attention. The detection systems are implemented either as host-based, run by each node; or as cluster/network-based, run by cluster head. These two implementations exhibit benefits and drawbacks, such as when cluster-based is used alone, it faces maintaining protection when nodes delay to elect or replace a cluster head. Despite different heuristic approaches that have been proposed, there is still room for improvement. This work proposes a detection system that can run either as host- or as cluster-based to detect routing misbehavior attacks. The detection runs on a dataset built using the proposed routing-information-sharing algorithms. The detection system learns from shared routing information and uses supervised learning, when previous network status or an exploratory network is available, to train the model, or it uses unsupervised learning. The testbed is extended to evaluate the effects of mobility and network size. The simulation results show promising performance even against limiting factors.
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Affiliation(s)
- Robert Basomingera
- Department of Computer Engineering, Ajou University, Suwon 16499, Korea;
| | - Young-June Choi
- Department of Software and Computer Engineering, Ajou University, Suwon 16499, Korea
- Correspondence:
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205
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Abstract
Active learning is the category of partially supervised algorithms that is differentiated by its strategy to combine both the predictive ability of a base learner and the human knowledge so as to exploit adequately the existence of unlabeled data. Its ambition is to compose powerful learning algorithms which otherwise would be based only on insufficient labelled samples. Since the latter kind of information could raise important monetization costs and time obstacles, the human contribution should be seriously restricted compared with the former. For this reason, we investigate the use of the Logitboost wrapper classifier, a popular variant of ensemble algorithms which adopts the technique of boosting along with a regression base learner based on Model trees into 3 different active learning query strategies. We study its efficiency against 10 separate learners under a well-described active learning framework over 91 datasets which have been split to binary and multi-class problems. We also included one typical Logitboost variant with a separate internal regressor for discriminating the benefits of adopting a more accurate regression tree than one-node trees, while we examined the efficacy of one hyperparameter of the proposed algorithm. Since the application of the boosting technique may provide overall less biased predictions, we assume that the proposed algorithm, named as Logitboost(M5P), could provide both accurate and robust decisions under active learning scenarios that would be beneficial on real-life weakly supervised classification tasks. Its smoother weighting stage over the misclassified cases during training as well as the accurate behavior of M5P are the main factors that lead towards this performance. Proper statistical comparisons over the metric of classification accuracy verify our assumptions, while adoption of M5P instead of weak decision trees was proven to be more competitive for the majority of the examined problems. We present our results through appropriate summarization approaches and explanatory visualizations, commenting our results per case.
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206
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A proposed method for handling an imbalance data in classification of blood type based on Myers-Briggs type indicator. JURNAL TEKNOLOGI DAN SISTEM KOMPUTER 2020. [DOI: 10.14710/jtsiskom.2020.13625] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Blood type still leads to an assumption about its relation to some personality aspects. This study observes preprocessing methods for improving the classification accuracy of MBTI data to determine blood type. The training and testing data use 250 data from the MBTI questionnaire answers given by 250 respondents. The classification uses the k-Nearest Neighbor (k-NN) algorithm. Without preprocessing, k-NN results in about 32 % accuracy, so it needs some preprocessing to handle data imbalance before the classification. The proposed preprocessing consists of two-stage, the first stage is the unsupervised resample, and the second is the supervised resample. For the validation, it uses ten cross-validations. The result of k-Nearest Neighbor classification after using these proposed preprocessing stages has finally increased the accuracy, F-score, and recall significantly.
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207
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Improved Weighted k-Nearest Neighbor Based on PSO for Wind Power System State Recognition. ENERGIES 2020. [DOI: 10.3390/en13205520] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
In this paper, we propose using particle swarm optimization (PSO) which can improve weighted k-nearest neighbors (PWKNN) to diagnose the failure of a wind power system. PWKNN adjusts weight to correctly reflect the importance of features and uses the distance judgment strategy to figure out the identical probability of multi-label classification. The PSO optimizes the weight and parameter k of PWKNN. This testing is based on four classified conditions of the 300 W wind generator which include healthy, loss of lubrication in the gearbox, angular misaligned rotor, and bearing fault. Current signals are used to measure the conditions. This testing tends to establish a feature database that makes up or trains classifiers through feature extraction. Not lowering the classification accuracy, the correlation coefficient of feature selection is applied to eliminate irrelevant features and to diminish the runtime of classifiers. A comparison with other traditional classifiers, i.e., backpropagation neural network (BPNN), k-nearest neighbor (k-NN), and radial basis function network (RBFN) shows that PWKNN has a higher classification accuracy. The feature selection can diminish the average features from 16 to 2.8 and can reduce the runtime by 61%. This testing can classify these four conditions accurately without being affected by noise and it can reach an accuracy of 83% in the condition of signal-to-noise ratio (SNR) is 20dB. The results show that the PWKNN approach is capable of diagnosing the failure of a wind power system.
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208
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Liu H, Li X, Zhang S, Tian Q. Adaptive Hashing With Sparse Matrix Factorization. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2020; 31:4318-4329. [PMID: 31899436 DOI: 10.1109/tnnls.2019.2954856] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Hashing offers a desirable and effective solution for efficiently retrieving the nearest neighbors from large-scale data because of its low storage and computation costs. One of the most appealing techniques for hashing learning is matrix factorization. However, most hashing methods focus only on building the mapping relationships between the Euclidean and Hamming spaces and, unfortunately, underestimate the naturally sparse structures of the data. In addition, parameter tuning is always a challenging and head-scratching problem for sparse hashing learning. To address these problems, in this article, we propose a novel hashing method termed adaptively sparse matrix factorization hashing (SMFH), which exploits sparse matrix factorization to explore the parsimonious structures of the data. Moreover, SMFH adopts an orthogonal transformation to minimize the quantization loss while deriving the binary codes. The most distinguished property of SMFH is that it is adaptive and parameter-free, that is, SMFH can automatically generate sparse representations and does not require human involvement to tune the regularization parameters for the sparse models. Empirical studies on four publicly available benchmark data sets show that the proposed method can achieve promising performance and is competitive with a variety of state-of-the-art hashing methods.
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209
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Affiliation(s)
- Priyanga Dilini Talagala
- Department of Econometrics and Business Statistics, Monash University
,
Clayton
,
VIC
,
Australia
- ARC Centre of Excellence for Mathematics and Statistical Frontiers (ACEMS), University of Melbourne
,
Parkville
,
VIC
,
Australia
- Department of Computational Mathematics, University of Moratuwa
,
Moratuwa
,
Sri Lanka
| | - Rob J. Hyndman
- Department of Econometrics and Business Statistics, Monash University
,
Clayton
,
VIC
,
Australia
- ARC Centre of Excellence for Mathematics and Statistical Frontiers (ACEMS), University of Melbourne
,
Parkville
,
VIC
,
Australia
| | - Kate Smith-Miles
- School of Mathematics and Statistics, University of Melbourne
,
Parkville
,
VIC
,
Australia
- ARC Centre of Excellence for Mathematics and Statistical Frontiers (ACEMS), University of Melbourne
,
Parkville
,
VIC
,
Australia
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210
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Zong M, Wang R, Chen Z, Wang M, Wang X, Potgieter J. Multi-cue based 3D residual network for action recognition. Neural Comput Appl 2020. [DOI: 10.1007/s00521-020-05313-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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211
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Pan Z, Wang Y, Pan Y. A new locally adaptive k-nearest neighbor algorithm based on discrimination class. Knowl Based Syst 2020. [DOI: 10.1016/j.knosys.2020.106185] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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212
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Toğaçar M, Ergen B, Cömert Z, Özyurt F. A Deep Feature Learning Model for Pneumonia Detection Applying a Combination of mRMR Feature Selection and Machine Learning Models. Ing Rech Biomed 2020. [DOI: 10.1016/j.irbm.2019.10.006] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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213
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Kirtania R, Mitra S, Shankar BU. A novel adaptive k-NN classifier for handling imbalance: Application to brain MRI. INTELL DATA ANAL 2020. [DOI: 10.3233/ida-194647] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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214
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Wang J, Bell M, Liu X, Liu G. Machine-Learning Techniques Can Enhance Dairy Cow Estrus Detection Using Location and Acceleration Data. Animals (Basel) 2020; 10:ani10071160. [PMID: 32650526 PMCID: PMC7401617 DOI: 10.3390/ani10071160] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 05/25/2020] [Accepted: 07/07/2020] [Indexed: 11/16/2022] Open
Abstract
The aim of this study was to assess combining location, acceleration and machine learning technologies to detect estrus in dairy cows. Data were obtained from 12 cows, which were monitored continuously for 12 days. A neck mounted device collected 25,684 records for location and acceleration. Four machine-learning approaches were tested (K-nearest neighbor (KNN), back-propagation neural network (BPNN), linear discriminant analysis (LDA), and classification and regression tree (CART)) to automatically identify cows in estrus from estrus indicators determined by principal component analysis (PCA) of twelve behavioral metrics, which were: duration of standing, duration of lying, duration of walking, duration of feeding, duration of drinking, switching times between activity and lying, steps, displacement, average velocity, walking times, feeding times, and drinking times. The study showed that the neck tag had a static and dynamic positioning accuracy of 0.25 ± 0.06 m and 0.45 ± 0.15 m, respectively. In the 0.5-h, 1-h, and 1.5-h time windows, the machine learning approaches ranged from 73.3 to 99.4% for sensitivity, from 50 to 85.7% for specificity, from 77.8 to 95.8% for precision, from 55.6 to 93.7% for negative predictive value (NPV), from 72.7 to 95.4% for accuracy, and from 78.6 to 97.5% for F1 score. We found that the BPNN algorithm with 0.5-h time window was the best predictor of estrus in dairy cows. Based on these results, the integration of location, acceleration, and machine learning methods can improve dairy cow estrus detection.
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Affiliation(s)
- Jun Wang
- School of Agricultural Equipment Engineering, Henan University of Science and Technology, Luoyang 471003, China;
- Correspondence:
| | - Matt Bell
- School of Biosciences, The University of Nottingham, Sutton Bonington, Loughborough LE12 5RD, UK;
| | - Xiaohang Liu
- School of Agricultural Equipment Engineering, Henan University of Science and Technology, Luoyang 471003, China;
| | - Gang Liu
- Key Laboratory for Modern Precision Agriculture System Integration Research, Ministry of Education, China Agricultural University, Beijing 100083, China;
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215
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Eun SJ, Kim J. Development of intelligent healthcare system based on ambulatory blood pressure measuring device. Neural Comput Appl 2020. [DOI: 10.1007/s00521-020-05114-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
AbstractCurrently, the market size of blood pressure monitors both in domestic and overseas is gradually increasing due to the increase in hypertension patients resulting from aging population. In addition, the necessity of developing systems and devices for the healthcare of hypertension patients is also increasing. Moreover, the determination of health normality in respect to the management of hypertension patients is possible, but it is essentially important to incorporate preventive healthcare. Thus, further studies on deep learning-based prediction technology using previous data are needed. This paper proposes the development of an intelligent healthcare management system that can help to manage the health of hypertensive patients. The system includes a wrist-worn ambulatory blood pressure monitoring device that can analyze the normality of measured blood pressures. The performance evaluation results of the proposed system verified the reliability of data acquisition as compared with the existing equipment as well as the efficiency of the intelligent healthcare system.
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216
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Asgher U, Khalil K, Khan MJ, Ahmad R, Butt SI, Ayaz Y, Naseer N, Nazir S. Enhanced Accuracy for Multiclass Mental Workload Detection Using Long Short-Term Memory for Brain-Computer Interface. Front Neurosci 2020; 14:584. [PMID: 32655353 PMCID: PMC7324788 DOI: 10.3389/fnins.2020.00584] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2019] [Accepted: 05/12/2020] [Indexed: 11/30/2022] Open
Abstract
Cognitive workload is one of the widely invoked human factors in the areas of human-machine interaction (HMI) and neuroergonomics. The precise assessment of cognitive and mental workload (MWL) is vital and requires accurate neuroimaging to monitor and evaluate the cognitive states of the brain. In this study, we have decoded four classes of MWL using long short-term memory (LSTM) with 89.31% average accuracy for brain-computer interface (BCI). The brain activity signals are acquired using functional near-infrared spectroscopy (fNIRS) from the prefrontal cortex (PFC) region of the brain. We performed a supervised MWL experimentation with four varying MWL levels on 15 participants (both male and female) and 10 trials of each MWL per participant. Real-time four-level MWL states are assessed using fNIRS system, and initial classification is performed using three strong machine learning (ML) techniques, support vector machine (SVM), k-nearest neighbor (k-NN), and artificial neural network (ANN) with obtained average accuracies of 54.33, 54.31, and 69.36%, respectively. In this study, novel deep learning (DL) frameworks are proposed, which utilizes convolutional neural network (CNN) and LSTM with 87.45 and 89.31% average accuracies, respectively, to solve high-dimensional four-level cognitive states classification problem. Statistical analysis, t-test, and one-way F-test (ANOVA) are also performed on accuracies obtained through ML and DL algorithms. Results show that the proposed DL (LSTM and CNN) algorithms significantly improve classification performance as compared with ML (SVM, ANN, and k-NN) algorithms.
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Affiliation(s)
- Umer Asgher
- School of Mechanical and Manufacturing Engineering (SMME), National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Khurram Khalil
- School of Mechanical and Manufacturing Engineering (SMME), National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Muhammad Jawad Khan
- School of Mechanical and Manufacturing Engineering (SMME), National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Riaz Ahmad
- School of Mechanical and Manufacturing Engineering (SMME), National University of Sciences and Technology (NUST), Islamabad, Pakistan
- Directorate of Quality Assurance and International Collaboration, National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Shahid Ikramullah Butt
- School of Mechanical and Manufacturing Engineering (SMME), National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Yasar Ayaz
- School of Mechanical and Manufacturing Engineering (SMME), National University of Sciences and Technology (NUST), Islamabad, Pakistan
- National Center of Artificial Intelligence (NCAI) – NUST, Islamabad, Pakistan
| | - Noman Naseer
- Department of Mechatronics Engineering, Air University, Islamabad, Pakistan
| | - Salman Nazir
- Training and Assessment Research Group, Department of Maritime Operations, University of South-Eastern Norway, Kongsberg, Norway
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217
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Tian Z, Meng L, Long X, Diao T, Hu M, Wang M, Liu M, Wang J. DNA methylation-based classification and identification of bladder cancer prognosis-associated subgroups. Cancer Cell Int 2020; 20:255. [PMID: 32565739 PMCID: PMC7302382 DOI: 10.1186/s12935-020-01345-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Accepted: 06/12/2020] [Indexed: 02/02/2023] Open
Abstract
BACKGROUND Bladder cancer (BCA) is the most common urinary tumor, but its pathogenesis is unclear, and the associated treatment strategy has rarely been updated. In recent years, a deeper understanding of tumor epigenetics has been gained, providing new opportunities for cancer detection and treatment. METHODS We identified prognostic methylation sites based on DNA methylation profiles of BCA in the TCGA database and constructed a specific prognostic subgroup. RESULTS Based on the consistent clustering of 402 CpGs, we identified seven subgroups that had a significant association with survival. The difference in DNA methylation levels was related to T stage, N stage, M stage, grade, sex, age, stage and prognosis. Finally, the prediction model was constructed using a Cox regression model and verified using the test dataset; the prognosis was consistent with that of the training set. CONCLUSIONS The classification based on DNA methylation is closely related to the clinicopathological characteristics of BCA and determines the prognostic value of each epigenetic subtype. Therefore, our findings provide a basis for the development of DNA methylation subtype-specific therapeutic strategies for human bladder cancer.
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Affiliation(s)
- Zijian Tian
- Department of Urology, Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, No. 1 DaHua Road, Dong Dan, Beijing, 100730 China
- Graduate School of Peking Union Medical College, Chinese Academy of Medical Sciences, 9 DongDan SANTIAO, Beijing, 100730 China
| | - Lingfeng Meng
- Department of Urology, Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, No. 1 DaHua Road, Dong Dan, Beijing, 100730 China
- Graduate School of Peking Union Medical College, Chinese Academy of Medical Sciences, 9 DongDan SANTIAO, Beijing, 100730 China
| | - Xingbo Long
- Department of Urology, Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, No. 1 DaHua Road, Dong Dan, Beijing, 100730 China
| | - Tongxiang Diao
- Department of Urology, Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, No. 1 DaHua Road, Dong Dan, Beijing, 100730 China
| | - Maolin Hu
- Department of Urology, Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, No. 1 DaHua Road, Dong Dan, Beijing, 100730 China
| | - Miao Wang
- Department of Urology, Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, No. 1 DaHua Road, Dong Dan, Beijing, 100730 China
| | - Ming Liu
- Department of Urology, Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, No. 1 DaHua Road, Dong Dan, Beijing, 100730 China
| | - Jianye Wang
- Department of Urology, Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, No. 1 DaHua Road, Dong Dan, Beijing, 100730 China
- Graduate School of Peking Union Medical College, Chinese Academy of Medical Sciences, 9 DongDan SANTIAO, Beijing, 100730 China
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218
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Chen ZD, Zhao L, Chen HY, Gong JN, Chen X, Chen CYC. A novel artificial intelligence protocol to investigate potential leads for Parkinson's disease. RSC Adv 2020; 10:22939-22958. [PMID: 35520357 PMCID: PMC9054719 DOI: 10.1039/d0ra04028b] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Accepted: 05/27/2020] [Indexed: 11/21/2022] Open
Abstract
Previous studies have shown that small molecule inhibitors of NLRP3 may be a potential treatment for Parkinson's disease (PD). NACHT, LRR and PYD domains-containing protein 3 (NLRP3), heat shock protein HSP 90-beta (HSP90AB1), caspase-1 (CASP1) and cellular tumor antigen p53 (TP53) have significant involvement in the pathogenesis pathway of PD. Molecular docking was used to screen the traditional Chinese medicine database TCM Database@Taiwan. Top traditional Chinese medicine (TCM) compounds with high affinities based on Dock Score were selected to form the drug-target interaction network to investigate potential candidates targeting NLRP3, HSP90AB1, CASP1, and TP53 proteins. Artificial intelligence model, 3D-Quantitative Structure-Activity Relationship (3D-QSAR) were constructed respectively utilizing training sets of inhibitors against the four proteins with known inhibitory activities (pIC50). The results showed that 2007_22057 (an indole derivative), 2007_22325 (a valine anhydride) and 2007_15317 (an indole derivative) might be a potential medicine formula for the treatment of PD. Then there are three candidate compounds identified by the result of molecular dynamics.
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Affiliation(s)
- Zhi-Dong Chen
- Artificial Intelligence Medical Center, School of Intelligent Systems Engineering, Sun Yat-sen University Shenzhen 510275 China
- School of Pharmaceutical Sciences, Sun Yat-sen University Shenzhen 510275 China
| | - Lu Zhao
- Artificial Intelligence Medical Center, School of Intelligent Systems Engineering, Sun Yat-sen University Shenzhen 510275 China
- Department of Clinical Laboratory, The Sixth Affiliated Hospital, Sun Yat-sen University Guangzhou 510655 China
| | - Hsin-Yi Chen
- Artificial Intelligence Medical Center, School of Intelligent Systems Engineering, Sun Yat-sen University Shenzhen 510275 China
| | - Jia-Ning Gong
- Artificial Intelligence Medical Center, School of Intelligent Systems Engineering, Sun Yat-sen University Shenzhen 510275 China
- School of Pharmaceutical Sciences, Sun Yat-sen University Shenzhen 510275 China
| | - Xu Chen
- Artificial Intelligence Medical Center, School of Intelligent Systems Engineering, Sun Yat-sen University Shenzhen 510275 China
- School of Pharmaceutical Sciences, Sun Yat-sen University Shenzhen 510275 China
| | - Calvin Yu-Chian Chen
- Artificial Intelligence Medical Center, School of Intelligent Systems Engineering, Sun Yat-sen University Shenzhen 510275 China
- Department of Medical Research, China Medical University Hospital Taichung 40447 Taiwan
- Department of Bioinformatics and Medical Engineering, Asia University Taichung 41354 Taiwan
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219
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Unsupervised feature selection based on joint spectral learning and general sparse regression. Neural Comput Appl 2020. [DOI: 10.1007/s00521-019-04117-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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220
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Du T, Wen G, Cai Z, Zheng W, Tan M, Li Y. Spectral clustering algorithm combining local covariance matrix with normalization. Neural Comput Appl 2020. [DOI: 10.1007/s00521-018-3852-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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221
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Deng S, Xie X, Yuan C, Yang L, Wu X. Numerical sensitive data recognition based on hybrid gene expression programming for active distribution networks. Appl Soft Comput 2020. [DOI: 10.1016/j.asoc.2020.106213] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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222
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223
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A medoid-based weighting scheme for nearest-neighbor decision rule toward effective text categorization. SN APPLIED SCIENCES 2020. [DOI: 10.1007/s42452-020-2738-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Abstract
AbstractThe k-nearest-neighbor (kNN) decision rule is a simple and robust classifier for text categorization. The performance of kNN decision rule depends heavily upon the value of the neighborhood parameter k. The method categorize a test document even if the difference between the number of members of two competing categories is one. Hence, choice of k is crucial as different values of k can change the result of text categorization. Moreover, text categorization is a challenging task as the text data are generally sparse and high dimensional. Note that, assigning a document to a predefined category for an arbitrary value of k may not be accurate when there is no bound on the margin of majority voting. A method is thus proposed in spirit of the nearest-neighbor decision rule using a medoid-based weighting scheme to deal with these issues. The method puts more weightage on the training documents that are not only lie close to the test document but also lie close to the medoid of its corresponding category in decision making, unlike the standard nearest-neighbor algorithms that stress on the documents that are just close to the test document. The aim of the proposed classifier is to enrich the quality of decision making. The empirical results show that the proposed method performs better than different standard nearest-neighbor decision rules and support vector machine classifier using various well-known text collections in terms of macro- and micro-averaged f-measure.
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Abstract
Tea is one of the most popular beverages in the world, and its processing involves a number of steps which includes fermentation. Tea fermentation is the most important step in determining the quality of tea. Currently, optimum fermentation of tea is detected by tasters using any of the following methods: monitoring change in color of tea as fermentation progresses and tasting and smelling the tea as fermentation progresses. These manual methods are not accurate. Consequently, they lead to a compromise in the quality of tea. This study proposes a deep learning model dubbed TeaNet based on Convolution Neural Networks (CNN). The input data to TeaNet are images from the tea Fermentation and Labelme datasets. We compared the performance of TeaNet with other standard machine learning techniques: Random Forest (RF), K-Nearest Neighbor (KNN), Decision Tree (DT), Support Vector Machine (SVM), Linear Discriminant Analysis (LDA), and Naive Bayes (NB). TeaNet was more superior in the classification tasks compared to the other machine learning techniques. However, we will confirm the stability of TeaNet in the classification tasks in our future studies when we deploy it in a tea factory in Kenya. The research also released a tea fermentation dataset that is available for use by the community.
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Weed Classification for Site-Specific Weed Management Using an Automated Stereo Computer-Vision Machine-Learning System in Rice Fields. PLANTS 2020; 9:plants9050559. [PMID: 32349459 PMCID: PMC7284472 DOI: 10.3390/plants9050559] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Revised: 04/24/2020] [Accepted: 04/24/2020] [Indexed: 12/02/2022]
Abstract
Site-specific weed management and selective application of herbicides as eco-friendly techniques are still challenging tasks to perform, especially for densely cultivated crops, such as rice. This study is aimed at developing a stereo vision system for distinguishing between rice plants and weeds and further discriminating two types of weeds in a rice field by using artificial neural networks (ANNs) and two metaheuristic algorithms. For this purpose, stereo videos were recorded across the rice field and different channels were extracted and decomposed into the constituent frames. Next, upon pre-processing and segmentation of the frames, green plants were extracted out of the background. For accurate discrimination of the rice and weeds, a total of 302 color, shape, and texture features were identified. Two metaheuristic algorithms, namely particle swarm optimization (PSO) and the bee algorithm (BA), were used to optimize the neural network for selecting the most effective features and classifying different types of weeds, respectively. Comparing the proposed classification method with the K-nearest neighbors (KNN) classifier, it was found that the proposed ANN-BA classifier reached accuracies of 88.74% and 87.96% for right and left channels, respectively, over the test set. Taking into account either the arithmetic or the geometric means as the basis, the accuracies were increased up to 92.02% and 90.7%, respectively, over the test set. On the other hand, the KNN suffered from more cases of misclassification, as compared to the proposed ANN-BA classifier, generating an overall accuracy of 76.62% and 85.59% for the classification of the right and left channel data, respectively, and 85.84% and 84.07% for the arithmetic and geometric mean values, respectively.
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228
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Lafta R, Zhang J, Tao X, Zhu X, Li H, Chang L, Deo R. A general extensible learning approach for multi-disease recommendations in a telehealth environment. Pattern Recognit Lett 2020. [DOI: 10.1016/j.patrec.2018.11.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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229
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Zheng W, Zhu X, Wen G, Zhu Y, Yu H, Gan J. Unsupervised feature selection by self-paced learning regularization. Pattern Recognit Lett 2020. [DOI: 10.1016/j.patrec.2018.06.029] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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230
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Yu H, Wen G, Gan J, Zheng W, Lei C. Self-paced Learning for K-means Clustering Algorithm. Pattern Recognit Lett 2020. [DOI: 10.1016/j.patrec.2018.08.028] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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231
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Gan J, Wen G, Yu H, Zheng W, Lei C. Supervised feature selection by self-paced learning regression. Pattern Recognit Lett 2020. [DOI: 10.1016/j.patrec.2018.08.029] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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232
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Yang S, Li B, Zhang Y, Duan M, Liu S, Zhang Y, Feng X, Tan R, Huang L, Zhou F. Selection of features for patient-independent detection of seizure events using scalp EEG signals. Comput Biol Med 2020; 119:103671. [PMID: 32339116 DOI: 10.1016/j.compbiomed.2020.103671] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Revised: 02/20/2020] [Accepted: 02/20/2020] [Indexed: 11/16/2022]
Abstract
Epilepsy involves brain abnormalities that may cause sudden seizures or other uncontrollable body activities. Epilepsy may have substantial impacts on the patient's quality of life, and its detection heavily relies on tedious and time-consuming manual curation by experienced clinicians, based on EEG signals. Most existing EEG-based seizure detection algorithms are patient-dependent and train a detection model for each patient. A new patient can only be monitored effectively after several episodes of epileptic seizures. This study investigates the patient-independent detection of seizure events using the open dataset CHB-MIT Scalp EEG. First, a novel feature extraction algorithm called MinMaxHist is proposed to measure the topological patterns of the EEG signals. Following this, MinMaxHist and several other feature extraction algorithms are applied to parameterize the EEG signals. Next, a comprehensive series of feature screening and classification optimization experiments are conducted, and finally, an optimized EEG-based seizure detection model is presented that can achieve overall values for accuracy, sensitivity, specificity, Matthews correlation coefficient, and Kappa of 0.8627, 0.8032, 0.9222, 0.7504 and 0.7254, respectively, with only 30 features. The classification accuracy of the method with MinMaxHist features was 0.0464 higher than that without MinMaxHist features. Compared with existing methods, the proposed algorithm achieved higher accuracy and sensitivity, as shown in the experimental results.
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Affiliation(s)
- Shuhan Yang
- BioKnow Health Informatics Lab, College of Computer Science and Technology, Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, 130012, Jilin, China
| | - Bo Li
- BioKnow Health Informatics Lab, College of Software, Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, 130012, Jilin, China
| | - Yinda Zhang
- BioKnow Health Informatics Lab, College of Computer Science and Technology, Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, 130012, Jilin, China
| | - Meiyu Duan
- BioKnow Health Informatics Lab, College of Computer Science and Technology, Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, 130012, Jilin, China
| | - Shuai Liu
- BioKnow Health Informatics Lab, College of Computer Science and Technology, Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, 130012, Jilin, China
| | - Yexian Zhang
- BioKnow Health Informatics Lab, College of Computer Science and Technology, Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, 130012, Jilin, China
| | - Xin Feng
- BioKnow Health Informatics Lab, College of Computer Science and Technology, Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, 130012, Jilin, China; Jilin Institute of Chemical Technology, Jilin, 132000, Jilin, China
| | - Renbo Tan
- Cancer Systems Biology Center, The China-Japan Union Hospital, Jilin University, Changchun, 130033, China
| | - Lan Huang
- BioKnow Health Informatics Lab, College of Computer Science and Technology, Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, 130012, Jilin, China
| | - Fengfeng Zhou
- BioKnow Health Informatics Lab, College of Computer Science and Technology, Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, 130012, Jilin, China.
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Abdar M, Zomorodi-Moghadam M, Zhou X, Gururajan R, Tao X, Barua PD, Gururajan R. A new nested ensemble technique for automated diagnosis of breast cancer. Pattern Recognit Lett 2020. [DOI: 10.1016/j.patrec.2018.11.004] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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234
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Lu G, Zhao X, Yin J, Yang W, Li B. Multi-task learning using variational auto-encoder for sentiment classification. Pattern Recognit Lett 2020. [DOI: 10.1016/j.patrec.2018.06.027] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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235
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Zhang L, Hu Y, Liu Y, Li J, Ding E. WiCLoc: A Novel CSI-based Fingerprint Localization System. INT J PATTERN RECOGN 2020. [DOI: 10.1142/s0218001420580033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
With the rapid development of smart devices and WiFi networks, WiFi-based indoor localization is becoming increasingly important in location-based services. Among various localization techniques, the fingerprint-based method has attracted much interest due to its high accuracy and low equipment requirement. Traditional fingerprint-based indoor localization systems mostly obtain positioning by measuring the received signal strength indicator (RSSI). However, the RSSI is affected by environmental influences, thereby limiting the precision of positioning. Therefore, we propose a new indoor fingerprint localization system based on channel state information (CSI). We adopt a novel method, in which the amplitude and phase of the CSI are fused to generate fingerprints in the training phase and apply a weighted [Formula: see text]-nearest neighbor (KNN) algorithm for fingerprint matching during the estimation phase. The system is validated in an exhibition hall and laboratory and we also compare the results of the proposed system with those of two CSI-based and an RSSI-based fingerprint localization systems. The results show that the proposed system achieves a minimum mean distance error of 0.85[Formula: see text]m in the exhibition hall and 1.28[Formula: see text]m in the laboratory, outperforming the other systems.
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Affiliation(s)
- Lei Zhang
- School of Information and Electrical Engineering, Xuzhou University of Technology, Xuzhou 221000, P. R. China
- IoT Perception Mine Research Center, China University of Mining and Technology, Xuzhou 221000, P. R. China
- National and Local Joint Engineering Laboratory of Internet, Application Technology on Coal Mine, Xuzhou, Jiangsu 221008, P. R. China
| | - Yanjun Hu
- School of Information and Electrical Engineering, Xuzhou University of Technology, Xuzhou 221000, P. R. China
| | - Yafeng Liu
- IoT Perception Mine Research Center, China University of Mining and Technology, Xuzhou 221000, P. R. China
| | - Jiaxiang Li
- School of Information and Electrical Engineering, Xuzhou University of Technology, Xuzhou 221000, P. R. China
| | - Enjie Ding
- IoT Perception Mine Research Center, China University of Mining and Technology, Xuzhou 221000, P. R. China
- National and Local Joint Engineering Laboratory of Internet, Application Technology on Coal Mine, Xuzhou, Jiangsu 221008, P. R. China
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Selvi RS, Valarmathi ML. Optimal Feature Selection for Big Data Classification: Firefly with Lion-Assisted Model. BIG DATA 2020; 8:125-146. [PMID: 32319798 DOI: 10.1089/big.2019.0022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
In this article, the proposed method develops a big data classification model with the aid of intelligent techniques. Here, the Parallel Pool Map reduce Framework is used for handling big data. The model involves three main phases, namely (1) feature extraction, (2) optimal feature selection, and (3) classification. For feature extraction, the well-known feature extraction techniques such as principle component analysis, linear discriminate analysis, and linear square regression are used. Since the length of feature vector tends to be high, the choice of the optimal features is complex task. Hence, the proposed model utilizes the optimal feature selection technology referred as Lion-based Firefly (L-FF) algorithm to select the optimal features. The main objective of this article is projected on minimizing the correlation between the selected features. It results in providing diverse information regarding the different classes of data. Once, the optimal features are selected, the classification algorithm called neural network (NN) is adopted, which effectively classify the data in an effective manner with the selected features. Furthermore, the proposed L-FF+NN model is compared with the traditional methods and proves the effectiveness over other methods. Experimental analysis shows that the proposed L-FF+NN model is 92%, 28%, 87%, 82%, and 78% superior to the state-of-art models such as GA+NN, FF+NN, PSO+NN, ABC+NN, and LA+NN, respectively.
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The Feature Selection Effect on Missing Value Imputation of Medical Datasets. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10072344] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
In practice, many medical domain datasets are incomplete, containing a proportion of incomplete data with missing attribute values. Missing value imputation can be performed to solve the problem of incomplete datasets. To impute missing values, some of the observed data (i.e., complete data) are generally used as the reference or training set, and then the relevant statistical and machine learning techniques are employed to produce estimations to replace the missing values. Since the collected dataset usually contains a certain number of feature dimensions, it is useful to perform feature selection for better pattern recognition. Therefore, the aim of this paper is to examine the effect of performing feature selection on missing value imputation of medical datasets. Experiments are carried out on five different medical domain datasets containing various feature dimensions. In addition, three different types of feature selection methods and imputation techniques are employed for comparison. The results show that combining feature selection and imputation is a better choice for many medical datasets. However, the feature selection algorithm should be carefully chosen in order to produce the best result. Particularly, the genetic algorithm and information gain models are suitable for lower dimensional datasets, whereas the decision tree model is a better choice for higher dimensional datasets.
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Demand Forecasting for a Mixed-Use Building Using Agent-Schedule Information with a Data-Driven Model. ENERGIES 2020. [DOI: 10.3390/en13040780] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
There is great interest in data-driven modelling for the forecasting of building energy consumption while using machine learning (ML) modelling. However, little research considers classification-based ML models. This paper compares the regression and classification ML models for daily electricity and thermal load modelling in a large, mixed-use, university building. The independent feature variables of the model include outdoor temperature, historical energy consumption data sets, and several types of ‘agent schedules’ that provide proxy information that is based on broad classes of activity undertaken by the building’s inhabitants. The case study compares four different ML models testing three different feature sets with a genetic algorithm (GA) used to optimize the feature sets for those ML models without an embedded feature selection process. The results show that the regression models perform significantly better than classification models for the prediction of electricity demand and slightly better for the prediction of heat demand. The GA feature selection improves the performance of all models and demonstrates that historical heat demand, temperature, and the ‘agent schedules’, which derive from large occupancy fluctuations in the building, are the main factors influencing the heat demand prediction. For electricity demand prediction, feature selection picks almost all ‘agent schedule’ features that are available and the historical electricity demand. Historical heat demand is not picked as a feature for electricity demand prediction by the GA feature selection and vice versa. However, the exclusion of historical heat/electricity demand from the selected features significantly reduces the performance of the demand prediction.
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239
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Li K, Feng J. Grouping multi‐rate sampling fault detection method for penicillin fermentation process. CAN J CHEM ENG 2020. [DOI: 10.1002/cjce.23701] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Keqin Li
- College of Information Science and EngineeringNortheastern University Shenyang China
| | - Jian Feng
- College of Information Science and EngineeringNortheastern University Shenyang China
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Singh N, Singh P. Stacking-based multi-objective evolutionary ensemble framework for prediction of diabetes mellitus. Biocybern Biomed Eng 2020. [DOI: 10.1016/j.bbe.2019.10.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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241
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Toğaçar M, Ergen B, Cömert Z. Detection of lung cancer on chest CT images using minimum redundancy maximum relevance feature selection method with convolutional neural networks. Biocybern Biomed Eng 2020. [DOI: 10.1016/j.bbe.2019.11.004] [Citation(s) in RCA: 59] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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242
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Chen S, Shen B, Wang X, Yoo SJ. Geo-Location Information Aided Spectrum Sensing in Cellular Cognitive Radio Networks. SENSORS 2019; 20:s20010213. [PMID: 31905987 PMCID: PMC6983158 DOI: 10.3390/s20010213] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2019] [Revised: 12/20/2019] [Accepted: 12/25/2019] [Indexed: 11/26/2022]
Abstract
Apart from the received signal energy, auxiliary information plays an important role in remarkably ameliorating conventional spectrum sensing. In this paper, a novel spectrum sensing scheme aided by geolocation information is proposed. In the cellular cognitive radio network (CCRN), secondary user equipments (SUEs) first acquire their wireless fingerprints via either received signal strength (RSS) or time of arrival (TOA) estimation over the reference signals received from their surrounding base-stations (BSs) and then pinpoint their geographical locations through a wireless fingerprint (WFP) matching process in the wireless fingerprint database (WFPD). Driven by the WFPD, the SUEs can easily ascertain for themselves the white licensed frequency band (LFB) for opportunistic access. In view of the fact that the locations of the primary user (PU) transmitters in the CCRN are either readily known or practically unavailable, the SUEs can either search the WFPD directly or rely on the support vector machine (SVM) algorithm to determine the availability of the LFB. Additionally, in order to alleviate the deficiency of single SUE-based sensing, a joint prediction mechanism is proposed on the basis of cooperation of multiple SUEs that are geographically nearby. Simulations verify that the proposed scheme achieves higher detection probability and demands less energy consumption than the conventional spectrum sensing algorithms.
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Affiliation(s)
- Siji Chen
- School of Communication and Information Engineering (SCIE), Chongqing University of Posts and Telecommunications (CQUPT), Chongqing 400065, China; (S.C.); (X.W.)
| | - Bin Shen
- School of Communication and Information Engineering (SCIE), Chongqing University of Posts and Telecommunications (CQUPT), Chongqing 400065, China; (S.C.); (X.W.)
- Correspondence: ; Tel.: +86-23-6246-0222
| | - Xin Wang
- School of Communication and Information Engineering (SCIE), Chongqing University of Posts and Telecommunications (CQUPT), Chongqing 400065, China; (S.C.); (X.W.)
| | - Sang-Jo Yoo
- Department of Information and Communication Engineering, Inha University, Incheon 402751, Korea;
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243
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WiFi-Based Gesture Recognition for Vehicular Infotainment System—An Integrated Approach. APPLIED SCIENCES-BASEL 2019. [DOI: 10.3390/app9245268] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
In the realm of intelligent vehicles, gestures can be characterized for promoting automotive interfaces to control in-vehicle functions without diverting the driver’s visual attention from the road. Driver gesture recognition has gained more attention in advanced vehicular technology because of its substantial safety benefits. This research work demonstrates a novel WiFi-based device-free approach for driver gestures recognition for automotive interface to control secondary systems in a vehicle. Our proposed wireless model can recognize human gestures very accurately for the application of in-vehicle infotainment systems, leveraging Channel State Information (CSI). This computationally efficient framework is based on the properties of K Nearest Neighbors (KNN), induced in sparse representation coefficients for significant improvement in gestures classification. In this typical approach, we explore the mean of nearest neighbors to address the problem of computational complexity of Sparse Representation based Classification (SRC). The presented scheme leads to designing an efficient integrated classification model with reduced execution time. Both KNN and SRC algorithms are complimentary candidates for integration in the sense that KNN is simple yet optimized, whereas SRC is computationally complex but efficient. More specifically, we are exploiting the mean-based nearest neighbor rule to further improve the efficiency of SRC. The ultimate goal of this framework is to propose a better feature extraction and classification model as compared to the traditional algorithms that have already been used for WiFi-based device-free gesture recognition. Our proposed method improves the gesture recognition significantly for diverse scale of applications with an average accuracy of 91.4%.
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A Strong Machine Learning Classifier and Decision Stumps Based Hybrid AdaBoost Classification Algorithm for Cognitive Radios. SENSORS 2019; 19:s19235077. [PMID: 31757117 PMCID: PMC6928977 DOI: 10.3390/s19235077] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Revised: 11/14/2019] [Accepted: 11/17/2019] [Indexed: 11/16/2022]
Abstract
Machine learning (ML) based classification methods have been viewed as one kind of alternative solution for cooperative spectrum sensing (CSS) in recent years. In this paper, ML techniques based CSS algorithms are investigated for cognitive radio networks (CRN). Specifically, a strong machine learning classifier (MLC) and decision stumps (DS) based adaptive boosting (AdaBoost) classification mechanism is proposed for pattern classification of the primary user's behavior in the network. The conventional AdaBoost algorithm only combines multiple sub-classifiers and produces a strong weight based on their weights in classification. Taking into account the fact that the strong MLC and the weak DS serve as different sub-classifiers in classification, we propose employing a strong MLC as the first-stage classifier and DS as the second-stage classifiers, to eventually determine the class that the spectrum energy vector belongs to. We verify in simulations that the proposed hybrid AdaBoost algorithms are capable of achieving a higher detection probability than the conventional ML based spectrum sensing algorithms and the conventional hard fusion based CSS schemes.
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Hale AT, Stonko DP, Wang L, Strother MK, Chambless LB. Machine learning analyses can differentiate meningioma grade by features on magnetic resonance imaging. Neurosurg Focus 2019; 45:E4. [PMID: 30453458 DOI: 10.3171/2018.8.focus18191] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Accepted: 08/15/2018] [Indexed: 11/06/2022]
Abstract
OBJECTIVEPrognostication and surgical planning for WHO grade I versus grade II meningioma requires thoughtful decision-making based on radiographic evidence, among other factors. Although conventional statistical models such as logistic regression are useful, machine learning (ML) algorithms are often more predictive, have higher discriminative ability, and can learn from new data. The authors used conventional statistical models and an array of ML algorithms to predict atypical meningioma based on radiologist-interpreted preoperative MRI findings. The goal of this study was to compare the performance of ML algorithms to standard statistical methods when predicting meningioma grade.METHODSThe cohort included patients aged 18-65 years with WHO grade I (n = 94) and II (n = 34) meningioma in whom preoperative MRI was obtained between 1998 and 2010. A board-certified neuroradiologist, blinded to histological grade, interpreted all MR images for tumor volume, degree of peritumoral edema, presence of necrosis, tumor location, presence of a draining vein, and patient sex. The authors trained and validated several binary classifiers: k-nearest neighbors models, support vector machines, naïve Bayes classifiers, and artificial neural networks as well as logistic regression models to predict tumor grade. The area under the curve-receiver operating characteristic curve was used for comparison across and within model classes. All analyses were performed in MATLAB using a MacBook Pro.RESULTSThe authors included 6 preoperative imaging and demographic variables: tumor volume, degree of peritumoral edema, presence of necrosis, tumor location, patient sex, and presence of a draining vein to construct the models. The artificial neural networks outperformed all other ML models across the true-positive versus false-positive (receiver operating characteristic) space (area under curve = 0.8895).CONCLUSIONSML algorithms are powerful computational tools that can predict meningioma grade with great accuracy.
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Affiliation(s)
- Andrew T Hale
- 1Department of Neurosurgery, Vanderbilt University Medical Center.,3Vanderbilt University School of Medicine
| | | | - Li Wang
- 4Department of Biostatistics, Vanderbilt University; and
| | - Megan K Strother
- 5Department of Radiology, Vanderbilt University Medical Center, Nashville, Tennessee
| | - Lola B Chambless
- 1Department of Neurosurgery, Vanderbilt University Medical Center.,3Vanderbilt University School of Medicine
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Quality and Defect Inspection of Green Coffee Beans Using a Computer Vision System. APPLIED SCIENCES-BASEL 2019. [DOI: 10.3390/app9194195] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
There is an increased industry demand for efficient and safe methods to select the best-quality coffee beans for a demanding market. Color, morphology, shape and size are important factors that help identify the best quality beans; however, conventional techniques based on visual and/or mechanical inspection are not sufficient to meet the requirements. Therefore, this paper presents an image processing and machine learning technique integrated with an Arduino Mega board, to evaluate those four important factors when selecting best-quality green coffee beans. For this purpose, the k-nearest neighbor algorithm is used to determine the quality of coffee beans and their corresponding defect types. The system consists of logical processes, image processing and the supervised learning algorithms that were programmed with MATLAB and then burned into the Arduino board. The results showed this method has a high effectiveness in classifying each single green coffee bean by identifying its main visual characteristics, and the system can handle several coffee beans present in a single image. Statistical analysis shows the process can identify defects and quality with high accuracy. The artificial vision method was helpful for the selection of quality coffee beans and may be useful to increase production, reduce production time and improve quality control.
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248
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Gupta Y, Lee KH, Choi KY, Lee JJ, Kim BC, Kwon GR. Early diagnosis of Alzheimer's disease using combined features from voxel-based morphometry and cortical, subcortical, and hippocampus regions of MRI T1 brain images. PLoS One 2019; 14:e0222446. [PMID: 31584953 PMCID: PMC6777799 DOI: 10.1371/journal.pone.0222446] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2019] [Accepted: 08/30/2019] [Indexed: 11/28/2022] Open
Abstract
In recent years, several high-dimensional, accurate, and effective classification methods have been proposed for the automatic discrimination of the subject between Alzheimer's disease (AD) or its prodromal phase {i.e., mild cognitive impairment (MCI)} and healthy control (HC) persons based on T1-weighted structural magnetic resonance imaging (sMRI). These methods emphasis only on using the individual feature from sMRI images for the classification of AD, MCI, and HC subjects and their achieved classification accuracy is low. However, latest multimodal studies have shown that combining multiple features from different sMRI analysis techniques can improve the classification accuracy for these types of subjects. In this paper, we propose a novel classification technique that precisely distinguishes individuals with AD, aAD (stable MCI, who had not converted to AD within a 36-month time period), and mAD (MCI caused by AD, who had converted to AD within a 36-month time period) from HC individuals. The proposed method combines three different features extracted from structural MR (sMR) images using voxel-based morphometry (VBM), hippocampal volume (HV), and cortical and subcortical segmented region techniques. Three classification experiments were performed (AD vs. HC, aAD vs. mAD, and HC vs. mAD) with 326 subjects (171 elderly controls and 81 AD, 35 aAD, and 39 mAD patients). For the development and validation of the proposed classification method, we acquired the sMR images from the dataset of the National Research Center for Dementia (NRCD). A five-fold cross-validation technique was applied to find the optimal hyperparameters for the classifier, and the classification performance was compared by using three well-known classifiers: K-nearest neighbor, support vector machine, and random forest. Overall, the proposed model with the SVM classifier achieved the best performance on the NRCD dataset. For the individual feature, the VBM technique provided the best results followed by the HV technique. However, the use of combined features improved the classification accuracy and predictive power for the early classification of AD compared to the use of individual features. The most stable and reliable classification results were achieved when combining all extracted features. Additionally, to analyze the efficiency of the proposed model, we used the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset to compare the classification performance of the proposed model with those of several state-of-the-art methods.
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Affiliation(s)
- Yubraj Gupta
- School of Information Communication Engineering, Chosun University, Gwangju, Republic of Korea
- National Research Center for Dementia, Chosun University, Gwangju, Republic of Korea
| | - Kun Ho Lee
- National Research Center for Dementia, Chosun University, Gwangju, Republic of Korea
- Department of Biomedical Science, College of Natural Sciences, Chosun University, Gwangju, Republic of Korea
| | - Kyu Yeong Choi
- National Research Center for Dementia, Chosun University, Gwangju, Republic of Korea
| | - Jang Jae Lee
- National Research Center for Dementia, Chosun University, Gwangju, Republic of Korea
| | - Byeong Chae Kim
- National Research Center for Dementia, Chosun University, Gwangju, Republic of Korea
- Department of Neurology, Chonnam National University Medical School, Gwangju, Republic of Korea
| | - Goo Rak Kwon
- School of Information Communication Engineering, Chosun University, Gwangju, Republic of Korea
- National Research Center for Dementia, Chosun University, Gwangju, Republic of Korea
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249
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Chen W, Zhuang J, Wang PP, Jiang J, Lin C, Zeng P, Liang Y, Zhang X, Dai Y, Diao H. DNA methylation-based classification and identification of renal cell carcinoma prognosis-subgroups. Cancer Cell Int 2019; 19:185. [PMID: 31346320 PMCID: PMC6636124 DOI: 10.1186/s12935-019-0900-4] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Accepted: 07/04/2019] [Indexed: 12/14/2022] Open
Abstract
BACKGROUND Renal cell carcinoma (RCC) is the most common kidney cancer and includes several molecular and histological subtypes with different clinical characteristics. The combination of DNA methylation and gene expression data can improve the classification of tumor heterogeneity, by incorporating differences at the epigenetic level and clinical features. METHODS In this study, we identified the prognostic methylation and constructed specific prognosis-subgroups based on the DNA methylation spectrum of RCC from the TCGA database. RESULTS Significant differences in DNA methylation profiles among the seven subgroups were revealed by consistent clustering using 3389 CpGs that indicated that were significant differences in prognosis. The specific DNA methylation patterns reflected differentially in the clinical index, including TNM classification, pathological grade, clinical stage, and age. In addition, 437 CpGs corresponding to 477 genes of 151 samples were identified as specific hyper/hypomethylation sites for each specific subgroup. A total of 277 and 212 genes corresponding to DNA methylation at promoter sites were enriched in transcription factor of GKLF and RREB-1, respectively. Finally, Bayesian network classifier with specific methylation sites was constructed and was used to verify the test set of prognoses into DNA methylation subgroups, which was found to be consistent with the classification results of the train set. DNA methylation-based classification can be used to identify the distinct subtypes of renal cell carcinoma. CONCLUSIONS This study shows that DNA methylation-based classification is highly relevant for future diagnosis and treatment of renal cell carcinoma as it identifies the prognostic value of each epigenetic subtype.
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Affiliation(s)
- Wenbiao Chen
- State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, College of Medicine, Zhejiang University, 79 Qing Chun Road, Hangzhou, China
| | - Jia Zhuang
- Department of Urinary Surgery, Puning People’s Hospital, Puning People’s Hospital Affiliated To Southern Medical University, 30 Liusha Avenue, Jieyang, Guangdong China
| | - Peizhong Peter Wang
- Division of Community Health and Humanities, Faculty of Medicine, Memorial University of Newfoundland, St. John’s, Newfoundland Canada
| | - Jingjing Jiang
- State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, College of Medicine, Zhejiang University, 79 Qing Chun Road, Hangzhou, China
| | - Chenhong Lin
- State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, College of Medicine, Zhejiang University, 79 Qing Chun Road, Hangzhou, China
| | - Ping Zeng
- State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, College of Medicine, Zhejiang University, 79 Qing Chun Road, Hangzhou, China
| | - Yan Liang
- State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, College of Medicine, Zhejiang University, 79 Qing Chun Road, Hangzhou, China
| | - Xujun Zhang
- State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, College of Medicine, Zhejiang University, 79 Qing Chun Road, Hangzhou, China
| | - Yong Dai
- Clinical Medical Research Center, Shenzhen People’s Hospital, The Second Clinical Medical College of Jinan University, 1017 Dongmen North Road, Luohu District, Shenzhen, Guangdong China
| | - Hongyan Diao
- State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, College of Medicine, Zhejiang University, 79 Qing Chun Road, Hangzhou, China
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250
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Qiu T, Shi X, Wang J, Li Y, Qu S, Cheng Q, Cui T, Sui S. Deep Learning: A Rapid and Efficient Route to Automatic Metasurface Design. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2019; 6:1900128. [PMID: 31380164 PMCID: PMC6662056 DOI: 10.1002/advs.201900128] [Citation(s) in RCA: 59] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Revised: 03/11/2019] [Indexed: 05/20/2023]
Abstract
Metasurfaces provide unprecedented routes to manipulations on electromagnetic waves, which can realize many exotic functionalities. Despite the rapid development of metasurfaces in recent years, the design process of metasurface is still time-consuming and computational resource-consuming. Moreover, it is quite complicated for layman users to design metasurfaces as plenty of specialized knowledge is required. In this work, a metasurface design method named REACTIVE is proposed on the basis of deep learning, as deep learning method has shown its natural advantages and superiorities in mining undefined rules automatically in many fields. REACTIVE is capable of calculating metasurface structure directly through a given design target; meanwhile, it also shows the advantage in making the design process automatic, more efficient, less time-consuming, and less computational resource-consuming. Besides, it asks for less professional knowledge, so that engineers are required only to pay attention to the design target. Herein, a triple-band absorber is designed using the REACTIVE method, where a deep learning model computes the metasurface structure automatically through inputting the desired absorption rate. The whole design process is achieved 200 times faster than the conventional one, which convincingly demonstrates the superiority of this design method. REACTIVE is an effective design tool for designers, especially for laymen users and engineers.
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Affiliation(s)
- Tianshuo Qiu
- Department of Basic SciencesAir Force Engineering UniversityXi'an710051China
| | - Xin Shi
- School of Computer ScienceXi'an Polytechnic UniversityXi'an710048China
| | - Jiafu Wang
- Department of Basic SciencesAir Force Engineering UniversityXi'an710051China
| | - Yongfeng Li
- Department of Basic SciencesAir Force Engineering UniversityXi'an710051China
| | - Shaobo Qu
- Department of Basic SciencesAir Force Engineering UniversityXi'an710051China
| | - Qiang Cheng
- State Key Laboratory of Millimeter WavesSoutheast UniversityNanjing210096China
| | - Tiejun Cui
- State Key Laboratory of Millimeter WavesSoutheast UniversityNanjing210096China
| | - Sai Sui
- Department of Basic SciencesAir Force Engineering UniversityXi'an710051China
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