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For: Walsh I, Martin AJM, Di Domenico T, Tosatto SCE. ESpritz: accurate and fast prediction of protein disorder. ACTA ACUST UNITED AC 2011;28:503-9. [PMID: 22190692 DOI: 10.1093/bioinformatics/btr682] [Citation(s) in RCA: 387] [Impact Index Per Article: 27.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Number Cited by Other Article(s)
301
Landau KS, Na I, Schenck RO, Uversky VN. Unfoldomics of prostate cancer: on the abundance and roles of intrinsically disordered proteins in prostate cancer. Asian J Androl 2017;18:662-72. [PMID: 27453073 PMCID: PMC5000786 DOI: 10.4103/1008-682x.184999] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
302
Intrinsically Disordered Regions in Serum Albumin: What Are They For? Cell Biochem Biophys 2017;76:39-57. [PMID: 28281231 DOI: 10.1007/s12013-017-0785-6] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2016] [Accepted: 02/13/2017] [Indexed: 12/16/2022]
303
Hanson J, Yang Y, Paliwal K, Zhou Y. Improving protein disorder prediction by deep bidirectional long short-term memory recurrent neural networks. Bioinformatics 2017;33:685-692. [PMID: 28011771 DOI: 10.1093/bioinformatics/btw678] [Citation(s) in RCA: 109] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2016] [Accepted: 10/26/2016] [Indexed: 11/12/2022]  Open
304
Wu W, Wang Z, Cong P, Li T. Accurate prediction of protein relative solvent accessibility using a balanced model. BioData Min 2017;10:1. [PMID: 28127402 PMCID: PMC5259893 DOI: 10.1186/s13040-016-0121-5] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2016] [Accepted: 12/27/2016] [Indexed: 01/19/2023]  Open
305
Pancsa R, Raimondi D, Cilia E, Vranken WF. Early Folding Events, Local Interactions, and Conservation of Protein Backbone Rigidity. Biophys J 2017;110:572-583. [PMID: 26840723 DOI: 10.1016/j.bpj.2015.12.028] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2015] [Revised: 12/21/2015] [Accepted: 12/29/2015] [Indexed: 01/20/2023]  Open
306
Wang Y, Guo Y, Pu X, Li M. A sequence-based computational method for prediction of MoRFs. RSC Adv 2017. [DOI: 10.1039/c6ra27161h] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
307
Wu Z, Hu G, Wang K, Kurgan L. Exploratory Analysis of Quality Assessment of Putative Intrinsic Disorder in Proteins. ARTIFICIAL INTELLIGENCE AND SOFT COMPUTING 2017. [DOI: 10.1007/978-3-319-59063-9_65] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
308
Uversky VN. How to Predict Disorder in a Protein of Interest. Methods Mol Biol 2017;1484:137-158. [PMID: 27787825 DOI: 10.1007/978-1-4939-6406-2_11] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
309
Data on evolution of intrinsically disordered regions of the human kinome and contribution of FAK1 IDRs to cytoskeletal remodeling. Data Brief 2016;10:315-324. [PMID: 28004021 PMCID: PMC5157709 DOI: 10.1016/j.dib.2016.11.099] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Revised: 11/21/2016] [Accepted: 11/30/2016] [Indexed: 11/23/2022]  Open
310
Fitzsimmons R, Amin N, Uversky VN. Understanding the roles of intrinsic disorder in subunits of hemoglobin and the disease process of sickle cell anemia. INTRINSICALLY DISORDERED PROTEINS 2016;4:e1248273. [PMID: 28232898 DOI: 10.1080/21690707.2016.1248273] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2016] [Accepted: 10/10/2016] [Indexed: 12/14/2022]
311
Lieutaud P, Ferron F, Uversky AV, Kurgan L, Uversky VN, Longhi S. How disordered is my protein and what is its disorder for? A guide through the "dark side" of the protein universe. INTRINSICALLY DISORDERED PROTEINS 2016;4:e1259708. [PMID: 28232901 DOI: 10.1080/21690707.2016.1259708] [Citation(s) in RCA: 80] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2016] [Revised: 11/03/2016] [Accepted: 11/04/2016] [Indexed: 12/18/2022]
312
Peng Z, Uversky VN, Kurgan L. Genes encoding intrinsic disorder in Eukaryota have high GC content. INTRINSICALLY DISORDERED PROTEINS 2016;4:e1262225. [PMID: 28232902 DOI: 10.1080/21690707.2016.1262225] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 09/20/2016] [Revised: 11/03/2016] [Accepted: 11/15/2016] [Indexed: 10/20/2022]
313
Alowolodu O, Johnson G, Alashwal L, Addou I, Zhdanova IV, Uversky VN. Intrinsic disorder in spondins and some of their interacting partners. INTRINSICALLY DISORDERED PROTEINS 2016;4:e1255295. [PMID: 28232900 DOI: 10.1080/21690707.2016.1255295] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2016] [Revised: 10/22/2016] [Accepted: 10/27/2016] [Indexed: 12/28/2022]
314
Srivastava A, Mazzocco G, Kel A, Wyrwicz LS, Plewczynski D. Detecting reliable non interacting proteins (NIPs) significantly enhancing the computational prediction of protein-protein interactions using machine learning methods. MOLECULAR BIOSYSTEMS 2016;12:778-85. [PMID: 26738778 DOI: 10.1039/c5mb00672d] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
315
Zambelli B, Uversky VN, Ciurli S. Nickel impact on human health: An intrinsic disorder perspective. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2016;1864:1714-1731. [DOI: 10.1016/j.bbapap.2016.09.008] [Citation(s) in RCA: 82] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2016] [Revised: 08/31/2016] [Accepted: 09/14/2016] [Indexed: 01/26/2023]
316
Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, Letunic I, Lopez R, Lu S, Marchler-Bauer A, Mi H, Mistry J, Natale DA, Necci M, Nuka G, Orengo CA, Park Y, Pesseat S, Piovesan D, Potter SC, Rawlings ND, Redaschi N, Richardson L, Rivoire C, Sangrador-Vegas A, Sigrist C, Sillitoe I, Smithers B, Squizzato S, Sutton G, Thanki N, Thomas PD, Tosatto SCE, Wu CH, Xenarios I, Yeh LS, Young SY, Mitchell AL. InterPro in 2017-beyond protein family and domain annotations. Nucleic Acids Res 2016;45:D190-D199. [PMID: 27899635 PMCID: PMC5210578 DOI: 10.1093/nar/gkw1107] [Citation(s) in RCA: 1073] [Impact Index Per Article: 119.2] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2016] [Accepted: 10/27/2016] [Indexed: 02/07/2023]  Open
317
p53 Proteoforms and Intrinsic Disorder: An Illustration of the Protein Structure-Function Continuum Concept. Int J Mol Sci 2016;17:ijms17111874. [PMID: 27834926 PMCID: PMC5133874 DOI: 10.3390/ijms17111874] [Citation(s) in RCA: 140] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2016] [Revised: 10/27/2016] [Accepted: 11/03/2016] [Indexed: 01/10/2023]  Open
318
Necci M, Piovesan D, Tosatto SCE. Large-scale analysis of intrinsic disorder flavors and associated functions in the protein sequence universe. Protein Sci 2016;25:2164-2174. [PMID: 27636733 DOI: 10.1002/pro.3041] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2016] [Revised: 09/12/2016] [Accepted: 09/12/2016] [Indexed: 12/22/2022]
319
Pancsa R, Tompa P. Essential functions linked with structural disorder in organisms of minimal genome. Biol Direct 2016;11:45. [PMID: 27608806 PMCID: PMC5016991 DOI: 10.1186/s13062-016-0149-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2016] [Accepted: 09/03/2016] [Indexed: 12/13/2022]  Open
320
Iqbal S, Hoque MT. Estimation of Position Specific Energy as a Feature of Protein Residues from Sequence Alone for Structural Classification. PLoS One 2016;11:e0161452. [PMID: 27588752 PMCID: PMC5010294 DOI: 10.1371/journal.pone.0161452] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2016] [Accepted: 08/06/2016] [Indexed: 11/20/2022]  Open
321
DeForte S, Uversky VN. Order, Disorder, and Everything in Between. Molecules 2016;21:molecules21081090. [PMID: 27548131 PMCID: PMC6274243 DOI: 10.3390/molecules21081090] [Citation(s) in RCA: 70] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2016] [Revised: 08/10/2016] [Accepted: 08/11/2016] [Indexed: 02/04/2023]  Open
322
Thieulin-Pardo G, Schramm A, Lignon S, Lebrun R, Kojadinovic M, Gontero B. The intriguing CP12-like tail of adenylate kinase 3 fromChlamydomonas reinhardtii. FEBS J 2016;283:3389-407. [DOI: 10.1111/febs.13814] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Revised: 06/14/2016] [Accepted: 07/13/2016] [Indexed: 01/09/2023]
323
Upadhyay AK, Sowdhamini R. Genome-Wide Prediction and Analysis of 3D-Domain Swapped Proteins in the Human Genome from Sequence Information. PLoS One 2016;11:e0159627. [PMID: 27467780 PMCID: PMC4965083 DOI: 10.1371/journal.pone.0159627] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2015] [Accepted: 07/06/2016] [Indexed: 11/19/2022]  Open
324
The Widespread Prevalence and Functional Significance of Silk-Like Structural Proteins in Metazoan Biological Materials. PLoS One 2016;11:e0159128. [PMID: 27415783 PMCID: PMC4944945 DOI: 10.1371/journal.pone.0159128] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Accepted: 06/28/2016] [Indexed: 01/05/2023]  Open
325
Gu Y, Li DW, Brüschweiler R. Decoding the Mobility and Time Scales of Protein Loops. J Chem Theory Comput 2016;11:1308-14. [PMID: 26579776 DOI: 10.1021/ct501085y] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
326
Pastor A, Singh AK, Shukla PK, Equbal MJ, Malik ST, Singh TP, Chaudhuri TK. Role of N-terminal region of Escherichia coli maltodextrin glucosidase in folding and function of the protein. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2016;1864:1138-1151. [PMID: 27317979 DOI: 10.1016/j.bbapap.2016.06.008] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2016] [Revised: 06/10/2016] [Accepted: 06/14/2016] [Indexed: 01/06/2023]
327
Sarkar D, Patra P, Ghosh A, Saha S. Computational Framework for Prediction of Peptide Sequences That May Mediate Multiple Protein Interactions in Cancer-Associated Hub Proteins. PLoS One 2016;11:e0155911. [PMID: 27218803 PMCID: PMC4878775 DOI: 10.1371/journal.pone.0155911] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2015] [Accepted: 05/08/2016] [Indexed: 01/26/2023]  Open
328
Malhis N, Jacobson M, Gsponer J. MoRFchibi SYSTEM: software tools for the identification of MoRFs in protein sequences. Nucleic Acids Res 2016;44:W488-93. [PMID: 27174932 PMCID: PMC4987941 DOI: 10.1093/nar/gkw409] [Citation(s) in RCA: 117] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2016] [Accepted: 05/03/2016] [Indexed: 11/13/2022]  Open
329
Al-Jiffri OH, Al-Sharif FM, Al-Jiffri EH, Uversky VN. Intrinsic disorder in biomarkers of insulin resistance, hypoadiponectinemia, and endothelial dysfunction among the type 2 diabetic patients. INTRINSICALLY DISORDERED PROTEINS 2016;4:e1171278. [PMID: 28232897 DOI: 10.1080/21690707.2016.1171278] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2015] [Revised: 03/15/2016] [Accepted: 03/17/2016] [Indexed: 02/06/2023]
330
Banerjee S, Chakraborty S, De RK. Deciphering the cause of evolutionary variance within intrinsically disordered regions in human proteins. J Biomol Struct Dyn 2016;35:233-249. [PMID: 26790343 DOI: 10.1080/07391102.2016.1143877] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
331
Stojanovski BM, Breydo L, Uversky VN, Ferreira GC. Murine erythroid 5-aminolevulinate synthase: Truncation of a disordered N-terminal extension is not detrimental for catalysis. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2016;1864:441-52. [DOI: 10.1016/j.bbapap.2016.02.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2015] [Revised: 01/19/2016] [Accepted: 02/03/2016] [Indexed: 11/16/2022]
332
Wang C, Uversky VN, Kurgan L. Disordered nucleiome: Abundance of intrinsic disorder in the DNA- and RNA-binding proteins in 1121 species from Eukaryota, Bacteria and Archaea. Proteomics 2016;16:1486-98. [DOI: 10.1002/pmic.201500177] [Citation(s) in RCA: 70] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2015] [Revised: 02/26/2016] [Accepted: 03/29/2016] [Indexed: 12/12/2022]
333
Yacoub HA, Al-Maghrabi OA, Ahmed ES, Uversky VN. Abundance and functional roles of intrinsic disorder in the antimicrobial peptides of the NK-lysin family. J Biomol Struct Dyn 2016;35:836-856. [DOI: 10.1080/07391102.2016.1164077] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
334
Espinoza-Fonseca LM, Kelekar A. High-resolution structural characterization of Noxa, an intrinsically disordered protein, by microsecond molecular dynamics simulations. MOLECULAR BIOSYSTEMS 2016;11:1850-6. [PMID: 25855872 DOI: 10.1039/c5mb00170f] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
335
He CL, Bian YY, Xue Y, Liu ZX, Zhou KQ, Yao CF, Lin Y, Zou HF, Luo FX, Qu YY, Zhao JY, Ye ML, Zhao SM, Xu W. Pyruvate Kinase M2 Activates mTORC1 by Phosphorylating AKT1S1. Sci Rep 2016;6:21524. [PMID: 26876154 PMCID: PMC4753445 DOI: 10.1038/srep21524] [Citation(s) in RCA: 99] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2015] [Accepted: 01/26/2016] [Indexed: 02/05/2023]  Open
336
Banerjee S, De RK. Structural disorder: a tool for housekeeping proteins performing tissue-specific interactions. J Biomol Struct Dyn 2016;34:1930-45. [DOI: 10.1080/07391102.2015.1095115] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
337
DeForte S, Uversky VN. Resolving the ambiguity: Making sense of intrinsic disorder when PDB structures disagree. Protein Sci 2016;25:676-88. [PMID: 26683124 DOI: 10.1002/pro.2864] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2015] [Revised: 12/14/2015] [Accepted: 12/15/2015] [Indexed: 12/25/2022]
338
Lieutaud P, Ferron F, Longhi S. Predicting Conformational Disorder. Methods Mol Biol 2016;1415:265-299. [PMID: 27115638 DOI: 10.1007/978-1-4939-3572-7_14] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
339
Yan J, Dunker AK, Uversky VN, Kurgan L. Molecular recognition features (MoRFs) in three domains of life. MOLECULAR BIOSYSTEMS 2016;12:697-710. [DOI: 10.1039/c5mb00640f] [Citation(s) in RCA: 103] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
340
Meng F, Na I, Kurgan L, Uversky VN. Compartmentalization and Functionality of Nuclear Disorder: Intrinsic Disorder and Protein-Protein Interactions in Intra-Nuclear Compartments. Int J Mol Sci 2015;17:ijms17010024. [PMID: 26712748 PMCID: PMC4730271 DOI: 10.3390/ijms17010024] [Citation(s) in RCA: 92] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2015] [Revised: 11/23/2015] [Accepted: 12/18/2015] [Indexed: 01/12/2023]  Open
341
El-Baky NA, Uversky VN, Redwan EM. Human consensus interferons: Bridging the natural and artificial cytokines with intrinsic disorder. Cytokine Growth Factor Rev 2015;26:637-45. [DOI: 10.1016/j.cytogfr.2015.07.012] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2015] [Revised: 07/01/2015] [Accepted: 07/02/2015] [Indexed: 12/13/2022]
342
Peyro M, Soheilypour M, Lee BL, Mofrad MRK. Evolutionarily Conserved Sequence Features Regulate the Formation of the FG Network at the Center of the Nuclear Pore Complex. Sci Rep 2015;5:15795. [PMID: 26541386 PMCID: PMC4635341 DOI: 10.1038/srep15795] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2015] [Accepted: 09/29/2015] [Indexed: 12/29/2022]  Open
343
DisPredict: A Predictor of Disordered Protein Using Optimized RBF Kernel. PLoS One 2015;10:e0141551. [PMID: 26517719 PMCID: PMC4627842 DOI: 10.1371/journal.pone.0141551] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2015] [Accepted: 10/09/2015] [Indexed: 12/02/2022]  Open
344
Malhis N, Wong ETC, Nassar R, Gsponer J. Computational Identification of MoRFs in Protein Sequences Using Hierarchical Application of Bayes Rule. PLoS One 2015;10:e0141603. [PMID: 26517836 PMCID: PMC4627796 DOI: 10.1371/journal.pone.0141603] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2015] [Accepted: 10/09/2015] [Indexed: 01/24/2023]  Open
345
Li J, Feng Y, Wang X, Li J, Liu W, Rong L, Bao J. An Overview of Predictors for Intrinsically Disordered Proteins over 2010-2014. Int J Mol Sci 2015;16:23446-62. [PMID: 26426014 PMCID: PMC4632708 DOI: 10.3390/ijms161023446] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2015] [Revised: 08/25/2015] [Accepted: 08/31/2015] [Indexed: 02/05/2023]  Open
346
Pellegrini M. Tandem Repeats in Proteins: Prediction Algorithms and Biological Role. Front Bioeng Biotechnol 2015;3:143. [PMID: 26442257 PMCID: PMC4585158 DOI: 10.3389/fbioe.2015.00143] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2015] [Accepted: 09/07/2015] [Indexed: 12/30/2022]  Open
347
Permyakov SE, Permyakov EA, Uversky VN. Intrinsically disordered caldesmon binds calmodulin via the "buttons on a string" mechanism. PeerJ 2015;3:e1265. [PMID: 26417545 PMCID: PMC4582948 DOI: 10.7717/peerj.1265] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2015] [Accepted: 09/03/2015] [Indexed: 01/27/2023]  Open
348
Baraldi E, Coller E, Zoli L, Cestaro A, Tosatto SCE, Zambelli B. Unfoldome variation upon plant-pathogen interactions: strawberry infection by Colletotrichum acutatum. PLANT MOLECULAR BIOLOGY 2015;89:49-65. [PMID: 26245354 DOI: 10.1007/s11103-015-0353-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2015] [Accepted: 07/26/2015] [Indexed: 06/04/2023]
349
Cong Q, Borek D, Otwinowski Z, Grishin NV. Skipper genome sheds light on unique phenotypic traits and phylogeny. BMC Genomics 2015;16:639. [PMID: 26311350 PMCID: PMC4551732 DOI: 10.1186/s12864-015-1846-0] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Accepted: 08/14/2015] [Indexed: 12/30/2022]  Open
350
Volpato V, Alshomrani B, Pollastri G. Accurate Ab Initio and Template-Based Prediction of Short Intrinsically-Disordered Regions by Bidirectional Recurrent Neural Networks Trained on Large-Scale Datasets. Int J Mol Sci 2015;16:19868-85. [PMID: 26307973 PMCID: PMC4581330 DOI: 10.3390/ijms160819868] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2015] [Revised: 07/28/2015] [Accepted: 07/29/2015] [Indexed: 12/02/2022]  Open
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