Multiple expression of molecular information: enforced generation of different supramolecular inorganic architectures by processing of the same ligand information through specific coordination algorithms

Multi-Responsive Eight-State Bis(acridinium-Zn(II) porphyrin) Receptor

A multi-responsive receptor consisting of two (acridinium-Zn(II) porphyrin) conjugates has been designed. The binding constant between this receptor and a ditopic guest has been modulated (i) upon addition of nucleophiles converting acridinium moieties into the non-aromatic acridane derivatives and (ii) upon oxidation of the porphyrin units. A total of eight states has been probed for this receptor resulting from the cascade of the recognition and responsive events. Moreover, the acridinium/acridane conversion leads to a significant change of the photophysical properties, switching from electron to energy transfer processes. Interestingly, for the bis(acridinium-Zn(II) porphyrin) receptor, charge-transfer luminescence in the near-infrared has been observed.

Synthesis, X-ray Crystal Structure and Antimicrobial Activity of Unexpected Trinuclear Cu(II) Complex from s-Triazine-Based Di-Compartmental Ligand via Self-Assembly

The synthesis and X-ray crystal structure of the trinuclear [Cu3(HL)(Cl)2(NO3)(H2O)5](NO3)2 complex of the s-triazine-based di-compartmental ligand, 2-methoxy-4,6-bis(2-(pyridin-2-ylmsethylene)hydrazinyl)-1,3,5-triazine (H2L), are presented. The Cu1 and Cu2 are penta-coordinated with CuN3ClO coordination environment, distorted square pyramidal coordination geometry while Cu3 is hexa-coordinated with CuN2O4 coordination sphere, and distorted octahedral geometry. The complex crystallized in the primitive P-1 triclinic crystal system with two molecular units per unit cell. Its packing is dominated by the O–H (35.5%) and Cl–H (8.8%) hydrogen bonding interactions as well as the π–π stacking (2.3%) and anion–π-stacking interactions (3.7%). The different coordination interactions were analyzed using atoms in molecules (AIM) theory, and the number of charge transferences from the ligand group to Cu(II) were determined using natural bond orbital calculations. The effect of the free ligand and its Cu(II) complex on the tested pathogenic microbes (Staphylococcus aureus, S. epidermidis, Enterococcus faecalis, Escherichia coli, Salmonella typhi and Pseudomonas aeruginosa) and one fungal isolate (Candida albicans) is presented. Both have wide spectrum antimicrobial activity against the selected microorganism. It is observed that the free ligand at 180 µg/mL was more effective than its Cu(II) complex and showed close results compared to the positive control gentamicin. At higher concentrations (1 mg/mL), the Cu(II) complex was found to be more active against S. epidermidis, E. coli and C. albicans than the lower concentration. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) values are also lower for the Cu(II) complex than the free ligand.

Stepwise syntheses and supramolecular assemblies of a series of polyoxovanadate hybrids with various architectures

Inorganic–organic hybrids with carbon chains of different lengths at the terminus of the organic ligands exhibit supramolecular-assemblies in different dimensions.

Supramolecular reactions of metallo-architectures: Ag2-double-helicate/Zn4-grid, Pb4-grid/Zn4-grid interconversions, and Ag2-double-helicate fusion

Supramolecular reactions are of importance in many fields. We report herein three examples where complexes of hydrazone-based ligands are involved. A Ag2-double-helicate was converted, by treatment with Zn(OTf)2, into a Zn4-grid (exchange of metal ions and change of the nature of the initial complex). A Pb4-grid was converted, upon reaction with ZnCl2 or ZnBr2, into a Zn4-grid (exchange of metal ions, but conservation of the nature of the initial complex). The reverse conversions were also achieved. The fusion of a Ag2-double-helicate with another Ag2-double-helicate was performed (exchange of ligands, but conservation of the nature of the complexes) and resulted in a mixture of three helicates (two homostranded ones and one heterostranded one).

Synthesis, X-ray characterization and DFT studies of N-benzimidazolyl-pyrimidine–M(ii) complexes (M = Cu, Co and Ni): the prominent role of π-hole and anion–π interactions

Five Cu(ii), Co(ii) and Ni(ii) complexes with 2-(N-benzimidazolyl)-pyrimidine and nitrate co-ligands have been synthesized and characterized by X-ray diffraction.

Preparation, crystal structures and conformations of six complexes based on 1,4-bis(benzimidazol-1-ylmethyl)-2,3,5,6-tetramethylbenzene

Six manganese(ii), cobalt(ii), copper(ii) and cadmium(ii) complexes based on dibenzimidazolyl ligands with the 1,2,4,5-tetramethylbenzene linker have been prepared and characterized.

Impact of the level of complexity in self-sorting: Fabrication of a supramolecular scalene triangle

The impact of the level of complexity in self-sorting was elaborated through the fabrication of various scalene triangles. It turned out that the self-sorting system with a higher level of complexity was far superior to less complex sorting algorithms.

Anion-templated self-assembly of highly stable Fe(II) pentagonal metallacycles with short anion-π contacts

The crystal structures of the self-assembled metallapentacycles [{Fe(5)(bptz)(5)(CH(3)CN)(10)} ⊂ 2SbF(6)][SbF(6)](8) (1) and [{Fe(5)(bmtz)(5)(CH(3)CN)(10)} ⊂ SbF(6)][SbF(6)](9) (2) with the π-acidic ligands bptz (3,6-bis(2-pyridyl)-1,2,4,5-tetrazine) and bmtz (3,6-bis(2-pyrimidyl)-1,2,4,5-tetrazine), respectively, revealed cationic pentagons templated by [SbF(6)](-) ions. The short anion-π contacts established between the anions and the tetrazine rings play an important role in the stability of the pentagons.

Multi-channel receptors based on thiopyrylium functionalised with macrocyclic receptors for the recognition of transition metal cations and anions

We report herein the synthesis and characterization of a family of ligands containing different cation binding sites covalently connected to a thiopyrylium signalling reporter. The receptors L1-L6 are able to signal the presence of certain metal cations via three different channels; i.e. electrochemically, fluorogenically and chromogenically. An acetonitrile solution of L1-L6 shows a bright blue colour due to a charge-transfer band in the 575-585 nm region. The colour variation in acetonitrile of L1-L6 in the presence of the metal cations Ag+, Cd2+, Cu2+, Fe3+, Hg2+, Ni2+, Pb2+ and Zn2+ has been studied. A selective hypsochromic shift of the blue band was found for the systems L4-Pb2+ and L5-Hg2+. Additionally, L1-L6 are poorly fluorescent but coordination with certain metal cations induces an enhancement of the fluorescence at ca 500 nm. For instance, the presence of Cu2+ and Fe3+ induced a remarkable 42-fold and 45-fold enhancement in the emission intensity of L1 centred at 500 nm, respectively. Also remarkable was the 18-fold enhancement observed for L4 and L5 in the presence of Fe3+ and Cu2+, respectively. The electrochemical behaviour of receptors L1-L6 was studied in acetonitrile using platinum as a working electrode and [Bu4N][BF4] as a supporting electrolyte. This family of receptors showed a one-electron reversible redox process at ca. -0.46 V versus sce attributed to the reduction of the thiopyrylium group. A moderate anodic shift in the presence of certain metal cations was observed. The effect in the UV-visible spectra of acetonitrile solutions of receptor L1-L6 in the presence of anions was also studied. A remarkable bleaching was found in the presence of cyanide.

Second-order self-organization in coordination-driven self-assembly: exploring the limits of self-selection

Self-organization during the self-assembly of a series of functionalized bispyridyl organic donors with complementary di-Pt(II) acceptors into supramolecular rhomboids and rectangles is explored. The connectivity and location of functional groups on the organic donors ensures that they do not interfere sterically or electronically with their respective binding sites. Carefully controlled reaction conditions are employed so that the only means of self-organization during self-assembly is through "second-order" effects arising from the distal functional groups themselves. With the selection of functionalized systems studied, the extent of second-order self-organization varies from essentially zero to quite pronounced.

sp Carbon Chains Surrounded by sp3 Carbon Double Helices: Coordination-Driven Self-Assembly of Wirelike Pt(C⋮C)nPt Moieties That Are Spanned by Two P(CH2)mP Linkages

Reactions of trans,trans-(C6F5)(p-tol3P)2Pt(CC)4Pt(Pp-tol3)2(C6F5) and diphosphines Ar2P(CH2)mPAr2 yield trans,trans-(C6F5)(Ar2P(CH2)mPAr2)Pt(CC)4Pt(Ar2P(CH2)mPAr2)(C6F5), in which the platinum atoms are spanned via an sp and two sp3 carbon chains (Ar/m = 3, Ph/14, 87%; 4, p-tol/14, 91%; 5, p-C6H4-t-Bu/14, 77%; 7, Ph/10, 80%; 8, Ph/11, 80%; 9, Ph/12, 36%; only oligomers form for m > 14). Crystal structures of 3-5 show that the sp3 chains adopt chiral double-helical conformations that shield the sp chain at approximately the van der Waals distance, with both enantiomers in the unit cell. The platinum square planes define angles of 196.6 degrees -189.9 degrees or more than a half twist. Crystal structures of 7-9, which have shorter sp3 chains, exhibit nonhelical conformations. Reaction of the corresponding Pt(CC)6Pt complex and Ph2P(CH2)18PPh2 gives an analogous adduct (27%). The crystal structure shows two independent molecules, one helical and the other not. Low-temperature NMR data suggest that the enantiomeric helical conformations of 3-5 rapidly interconvert in solution. Cyclic voltammograms of 3-5 show more reversible oxidations than model compounds lacking bridging sp3 chains. These are the only double-helical molecules that do not feature bonding interactions between the helix strands, or covalent bonds to templates dispersed throughout the strands, or any type of encoding. The driving force for helix formation is analyzed.

Messages in molecules: ligand/cation coding and self-recognition in a constitutionally dynamic system of heterometallic double helicates

Double helicates are known to exhibit self-recognition characteristics determined by the coordination geometry of the metal involved as well as by the topicity of the ligands. Combining tridentate (terpyridine, T) or bidentate (bipyridine, B) subunits in a tritopic strand affords a set of ligands able to assemble by pairs to form double helicates, homo- or heterostranded, homo- or heterotopic, depending on the coordination properties of the metals involved. The four ligand strands, BBB, TTT, BBT, and TBT form constitutionally dynamic sets of double helicates with the metal ions Cu(I), Cu(II), and Zn(II); these helicates correspond to the correct coding of the BB, BT, and TT pairs for tetra-, penta-, and hexacoordinate Cu(I), Cu(II), and Zn(II) cations, respectively.

Simple thermodynamics for unravelling sophisticated self-assembly processes

During the past 15 years, coordination chemistry has rapidly developed toward multicomponent assemblies involving several ligands and metal ions, which are connected via intra- or intermolecular processes. The fascinating structural aspect of these complexation reactions has been early recognized for the design of sophisticated (supra)molecular architectures with novel topologies and functions, while the concomitant energetic part only recently emerged as a potential tools for controlling and programming self-assemblies. In this Perspective, we focus on the modelling of the free energy changes accompanying self-assembly processes. Starting with the original protein-ligand model borrowed from biology, which describes complicated multicomponent assemblies, we present (i) its adaptation to coordination chemistry and (ii) its significance for addressing cooperativity as an extra energy cost resulting from intercomponent interactions. An additional entropic concept arising from the separation of intra- and intermolecular complexation processes is then discussed, together with its explicit consideration for modeling multicomponent complexation reactions. Finally, both aspects (i.e. cooperativity and intra-/intermolecular connections) are combined in the extended site binding model, which is able to dissect free energy changes occurring in sophisticated metal-ligand assemblies with a minimum set of microscopic parameters. Applications to experimental complexation reactions of increasing complexity are systematically discussed, and illustrate the potential and limitations of each model.

Ligand-Controlled Mixed-Valence Copper Rectangular Grid-Type Coordination Polymers Based on Pyridylterpyridine

Six mixed-valence Cu(I)Cu(II) compounds containing 4'-(4-pyridyl)-2,2':6',2' '-terpyridine (L1) or 4'-(2-pyridyl)-2,2':6',2' '-terpyridine (L2) were prepared under the hydrothermal and ambient conditions, and their crystal structures were determined by single-crystal X-ray diffraction. Selection of CuCl(2).2H(2)O or Cu(CH(3)COO)(2).H(2)O with the L1 ligand and NH(4)SCN, KI, or KBr under hydrothermal conditions afforded 1-dimensional mixed-valence Cu(I)Cu(II) compounds [Cu(2)(L1)(mu-1,1-SCN)(mu-Cl)Cl](n) (1), [Cu(2)(L1)(mu-I)(2)Cl](n) (2), [Cu(2)(L1)(mu-Br)(2)Br](n) (3), and [Cu(2)(L1)(mu-1,3-SCN)(2)(SCN)](n)(4), respectively. Compound 5, prepared by layering with CuSCN and L1, is a 2-dimensional bilayer structure. In compounds 1-5, the L1 ligand and X (X = Cl, Br, I, SCN) linked between monovalent and divalent copper atoms resulting in the formation of mixed-valence rectangular grid-type M(4)L(4) or M(6)L(6) building blocks, which were further linked by X (X = Cl, Br, I, SCN) to form 1- or 2-dimensional polymers. The sizes of M(4)L(4) units in 1-4 were fine-tuned by the sizes of X linkers. Reaction of Cu(CH(3)COO)(2).H(2)O with L2 and NH(4)SCN under hydrothermal conditions gave mixed-valence Cu(I)Cu(II) compound [Cu(2)(L2)(mu-1,3-SCN)(3)](n) (6). Unlike those in 1-5, the structure of 6 was constructed from thiocyanate groups and the pendant pyridine of L2 left uncoordinated. The temperature-dependent magnetic susceptibility studies on compounds 1 and 4 showed the presence of mixed-valence electronic structure.

A Simple Thermodynamic Model for Quantitatively Addressing Cooperativity in Multicomponent Self-Assembly Processes—Part 2: Extension to Multimetallic Helicates Possessing Different Binding Sites

The extended site-binding model, which explicitly separates intramolecular interactions (i.e., intermetallic and interligand) from the successive binding of metal ions to polytopic receptors, is used for unravelling the self-assembly of trimetallic double-stranded Cu(I) and triple-stranded Eu(III) helicates. A thorough analysis of the available stability constants systematically shows that negatively cooperative processes operate, in strong contrast with previous reports invoking either statistical behaviours or positive cooperativity. Our results also highlight the need for combining successive generations of complexes with common binding units, but with increasing metallic nuclearities, for rationalizing and programming multicomponent supramolecular assemblies.