Hydrogen-Activating Enzymes: Activity Does Not Correlate with Oxygen Sensitivity

Folding of heterologous proteins in bacterial cell factories: Cellular mechanisms and engineering strategies

The expression of correctly folded and functional heterologous proteins is important in many biotechnological production processes, whether it is enzymes, biopharmaceuticals or biosynthetic pathways for production of sustainable chemicals. For industrial applications, bacterial platform organisms, such as E. coli, are still broadly used due to the availability of tools and proven suitability at industrial scale. However, expression of heterologous proteins in these organisms can result in protein aggregation and low amounts of functional protein. This review provides an overview of the cellular mechanisms that can influence protein folding and expression, such as co-translational folding and assembly, chaperone binding, as well as protein quality control, across different model organisms. The knowledge of these mechanisms is then linked to different experimental methods that have been applied in order to improve functional heterologous protein folding, such as codon optimization, fusion tagging, chaperone co-production, as well as strain and protein engineering strategies.

Oxygen-Tolerant H2 Production by [FeFe]-H2ase Active Site Mimics Aided by Second Sphere Proton Shuttle

The instability of [FeFe]-H₂ases and their biomimetics toward O₂ renders them inefficient to implement in practical H₂ generation (HER). Previous investigations on synthetic models as well as natural enzymes proved that reactive oxygen species (ROS) generated on O₂ exposure oxidatively degrades the 2Fe subcluster within the H-cluster active site. Recent electrochemical studies, coupled with theoretical investigations on [FeFe]-H₂ase suggested that selective O₂ reduction to H₂O could eliminate the ROS, and hence, tolerance against oxidative degradation could be achieved ( Nat. Chem. 2017, 9, 88-95). We have prepared a series of 2Fe subsite mimics with substituted arenes attached to bridgehead N atoms in the S to S linker, (μ-S₂(CH₂)₂NAr)[Fe(CO)₃]₂. Structural analyses find the nature of the substituent on the arene offers steric control of the orientation of bridgehead N atoms, affecting their proton uptake and translocation ability. The heterogeneous electrochemical studies of these complexes physiadsorbed on edge plane graphite (EPG) electrode show the onset of HER activity at ∼180 mV overpotential in pH 5.5 water. In addition, bridgehead N-protonation and subsequent H-bonding capability are established to facilitate the O-O bond cleavage resulting in selective O₂ reduction to H₂O. This allows a synthetic [FeFe]-H₂ase model to reduce protons to H₂ unabated in the presence of dissolved O₂ in water at nearly neutral pH (pH 5.5); i.e., O₂-tolerant, stable HER activity is achieved.

Aerobic damage to [FeFe]-hydrogenases: activation barriers for the chemical attachment of O2

[FeFe]-hydrogenases are the best natural hydrogen-producing enzymes but their biotechnological exploitation is hampered by their extreme oxygen sensitivity. The free energy profile for the chemical attachment of O2 to the enzyme active site was investigated by using a range-separated density functional re-parametrized to reproduce high-level ab initio data. An activation free-energy barrier of 13 kcal mol(-1) was obtained for chemical bond formation between the di-iron active site and O2, a value in good agreement with experimental inactivation rates. The oxygen binding can be viewed as an inner-sphere electron-transfer process that is strongly influenced by Coulombic interactions with the proximal cubane cluster and the protein environment. The implications of these results for future mutation studies with the aim of increasing the oxygen tolerance of this enzyme are discussed.