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Arlt C, Flegler V, Ihling CH, Schäfer M, Thondorf I, Sinz A. An Integrated Mass Spectrometry Based Approach to Probe the Structure of the Full‐Length Wild‐Type Tetrameric p53 Tumor Suppressor. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201609826] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Christian Arlt
- Department of Pharmaceutical Chemistry and Bioanalytics Institute of Pharmacy Martin-Luther University Halle-Wittenberg Wolfgang-Langenbeck-Str. 4 06120 Halle/Saale Germany
| | - Vanessa Flegler
- Department of Pharmaceutical Chemistry and Bioanalytics Institute of Pharmacy Martin-Luther University Halle-Wittenberg Wolfgang-Langenbeck-Str. 4 06120 Halle/Saale Germany
| | - Christian H. Ihling
- Department of Pharmaceutical Chemistry and Bioanalytics Institute of Pharmacy Martin-Luther University Halle-Wittenberg Wolfgang-Langenbeck-Str. 4 06120 Halle/Saale Germany
| | - Mathias Schäfer
- Department Mass Spectrometry Institute of Organic Chemistry University of Cologne Greinstraße 4 50939 Cologne Germany
| | - Iris Thondorf
- Department of Technical Biochemistry Institute of Biochemistry and Biotechnology Martin-Luther University Halle-Wittenberg Kurt-Mothes-Str. 3 06120 Halle/Saale Germany
| | - Andrea Sinz
- Department of Pharmaceutical Chemistry and Bioanalytics Institute of Pharmacy Martin-Luther University Halle-Wittenberg Wolfgang-Langenbeck-Str. 4 06120 Halle/Saale Germany
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Arlt C, Flegler V, Ihling CH, Schäfer M, Thondorf I, Sinz A. An Integrated Mass Spectrometry Based Approach to Probe the Structure of the Full-Length Wild-Type Tetrameric p53 Tumor Suppressor. Angew Chem Int Ed Engl 2016; 56:275-279. [PMID: 27897373 DOI: 10.1002/anie.201609826] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2016] [Revised: 11/10/2016] [Indexed: 12/31/2022]
Abstract
We present an integrated approach for investigating the topology of proteins through native mass spectrometry (MS) and cross-linking/MS, which we applied to the full-length wild-type p53 tetramer. For the first time, the two techniques were combined in one workflow to obtain not only structural insight in the p53 tetramer, but also information on the cross-linking efficiency and the impact of cross-linker modification on the conformation of an intrinsically disordered protein (IDP). P53 cross-linking was monitored by native MS and as such, our strategy serves as a quality control for different cross-linking reagents. Our approach can be applied to the structural investigation of various protein systems, including IDPs and large protein assemblies, which are challenging to study by the conventional methods used for protein structure characterization.
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Affiliation(s)
- Christian Arlt
- Department of Pharmaceutical Chemistry and Bioanalytics, Institute of Pharmacy, Martin-Luther University Halle-Wittenberg, Wolfgang-Langenbeck-Str. 4, 06120, Halle/Saale, Germany
| | - Vanessa Flegler
- Department of Pharmaceutical Chemistry and Bioanalytics, Institute of Pharmacy, Martin-Luther University Halle-Wittenberg, Wolfgang-Langenbeck-Str. 4, 06120, Halle/Saale, Germany
| | - Christian H Ihling
- Department of Pharmaceutical Chemistry and Bioanalytics, Institute of Pharmacy, Martin-Luther University Halle-Wittenberg, Wolfgang-Langenbeck-Str. 4, 06120, Halle/Saale, Germany
| | - Mathias Schäfer
- Department Mass Spectrometry, Institute of Organic Chemistry, University of Cologne, Greinstraße 4, 50939, Cologne, Germany
| | - Iris Thondorf
- Department of Technical Biochemistry, Institute of Biochemistry and Biotechnology, Martin-Luther University Halle-Wittenberg, Kurt-Mothes-Str. 3, 06120, Halle/Saale, Germany
| | - Andrea Sinz
- Department of Pharmaceutical Chemistry and Bioanalytics, Institute of Pharmacy, Martin-Luther University Halle-Wittenberg, Wolfgang-Langenbeck-Str. 4, 06120, Halle/Saale, Germany
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Fujiwara D, Kitada H, Oguri M, Nishihara T, Michigami M, Shiraishi K, Yuba E, Nakase I, Im H, Cho S, Joung JY, Kodama S, Kono K, Ham S, Fujii I. A Cyclized Helix-Loop-Helix Peptide as a Molecular Scaffold for the Design of Inhibitors of Intracellular Protein-Protein Interactions by Epitope and Arginine Grafting. Angew Chem Int Ed Engl 2016; 55:10612-5. [DOI: 10.1002/anie.201603230] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2016] [Revised: 06/07/2016] [Indexed: 01/08/2023]
Affiliation(s)
- Daisuke Fujiwara
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Hidekazu Kitada
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Masahiro Oguri
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Toshio Nishihara
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Masataka Michigami
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Kazunori Shiraishi
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Eiji Yuba
- Department of Applied Chemistry; Graduate School of Engineering; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Ikuhiko Nakase
- N2RC; Osaka Prefecture University; 1-2, Gakuen-cho, Naka-ku Osaka 599-8570 Japan
| | - Haeri Im
- Department of Chemistry; Sookmyung Women's University; Hyochangwongil 52, Yongsanku Seoul 140-742 Korea
| | - Sunhee Cho
- Department of Chemistry; Sookmyung Women's University; Hyochangwongil 52, Yongsanku Seoul 140-742 Korea
| | - Jong Young Joung
- Department of Chemistry; Sookmyung Women's University; Hyochangwongil 52, Yongsanku Seoul 140-742 Korea
| | - Seiji Kodama
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Kenji Kono
- Department of Applied Chemistry; Graduate School of Engineering; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Sihyun Ham
- Department of Chemistry; Sookmyung Women's University; Hyochangwongil 52, Yongsanku Seoul 140-742 Korea
| | - Ikuo Fujii
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
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Fujiwara D, Kitada H, Oguri M, Nishihara T, Michigami M, Shiraishi K, Yuba E, Nakase I, Im H, Cho S, Joung JY, Kodama S, Kono K, Ham S, Fujii I. A Cyclized Helix-Loop-Helix Peptide as a Molecular Scaffold for the Design of Inhibitors of Intracellular Protein-Protein Interactions by Epitope and Arginine Grafting. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201603230] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Daisuke Fujiwara
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Hidekazu Kitada
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Masahiro Oguri
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Toshio Nishihara
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Masataka Michigami
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Kazunori Shiraishi
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Eiji Yuba
- Department of Applied Chemistry; Graduate School of Engineering; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Ikuhiko Nakase
- N2RC; Osaka Prefecture University; 1-2, Gakuen-cho, Naka-ku Osaka 599-8570 Japan
| | - Haeri Im
- Department of Chemistry; Sookmyung Women's University; Hyochangwongil 52, Yongsanku Seoul 140-742 Korea
| | - Sunhee Cho
- Department of Chemistry; Sookmyung Women's University; Hyochangwongil 52, Yongsanku Seoul 140-742 Korea
| | - Jong Young Joung
- Department of Chemistry; Sookmyung Women's University; Hyochangwongil 52, Yongsanku Seoul 140-742 Korea
| | - Seiji Kodama
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Kenji Kono
- Department of Applied Chemistry; Graduate School of Engineering; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
| | - Sihyun Ham
- Department of Chemistry; Sookmyung Women's University; Hyochangwongil 52, Yongsanku Seoul 140-742 Korea
| | - Ikuo Fujii
- Department of Biological Science; Graduate School of Science; Osaka Prefecture University; 1-1, Gakuen-cho, Naka-ku Osaka 599-8531 Japan
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Ryoji Noyori Prize: M. Shibasaki / New Year Honours: C. V. Robinson and S. E. Gibson / Clara Immerwahr Award: J. K. Edwards / Clemens Winkler Medal: Otto S. Wolfbeis / Board of Trustees, Volkswagen Foundation: T. Carell / AkzoNobel North America Science A. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/anie.201301240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Ryoji-Noyori-Preis: M. Shibasaki / New Year Honours: C. V. Robinson und S. E. Gibson / Clara-Immerwahr-Preis: J. K. Edwards / Clemens-Winkler-Medaille: Otto S. Wolfbeis / Kuratorium der Volkswagenstiftung: T. Carell / AkzoNobel North America Science Award. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201301240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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