1
|
Kamoshita S, Matsui S, Suto N, Sakurai K. Reactivity Analysis of New Multivalent Electrophilic Probes for Affinity Labeling of Carbohydrate Binding Proteins. Chembiochem 2021; 23:e202100388. [PMID: 34490706 DOI: 10.1002/cbic.202100388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Revised: 09/05/2021] [Indexed: 11/07/2022]
Abstract
We have designed and synthesized six different multivalent electrophiles as carbohydrate affinity labeling probes. Evaluation of the reactivity of the electrophiles against peanut agglutinin (PNA) and Ricinus communis agglutinin (RCA) showed that p- and m-aryl sulfonyl fluoride are effective protein reactive groups that label carbohydrate binding lectins in a ligand-dependent fashion at a nanomolar probe concentration. Analysis of the selectivity of affinity labeling in the presence of excess BSA as a nonspecific protein indicated that m-arylsulfonyl fluoride is a more selective protein-reactive group, albeit with attenuated reactivity. Further analysis showed that the labeling efficiency of the multivalent electrophilic probes can be improved by employing reaction conditions involving 25 °C instead of typically employed 4 °C. Both isomers of arylsulfonyl fluoride groups together represent promising affinity labels for target identification studies that could serve as more efficient alternatives to photoreactive groups.
Collapse
Affiliation(s)
- Shione Kamoshita
- Department of Bioengineering and Life Science, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
| | - Saho Matsui
- Department of Bioengineering and Life Science, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
| | - Nanako Suto
- Department of Bioengineering and Life Science, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
| | - Kaori Sakurai
- Department of Bioengineering and Life Science, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
| |
Collapse
|
2
|
Suto N, Kamoshita S, Hosoya S, Sakurai K. Exploration of the Reactivity of Multivalent Electrophiles for Affinity Labeling: Sulfonyl Fluoride as a Highly Efficient and Selective Label. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202104347] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Nanako Suto
- Department of Bioengineering and Life Science Tokyo University of Agriculture and Technology 4-24-16, Naka-cho, Koganei-shi Tokyo 184-8588 Japan
| | - Shione Kamoshita
- Department of Bioengineering and Life Science Tokyo University of Agriculture and Technology 4-24-16, Naka-cho, Koganei-shi Tokyo 184-8588 Japan
| | - Shoichi Hosoya
- Institute of Research Tokyo Medical and Dental University 1-5-45, Yushima, Bunkyo-ku Tokyo 113-8510 Japan
| | - Kaori Sakurai
- Department of Bioengineering and Life Science Tokyo University of Agriculture and Technology 4-24-16, Naka-cho, Koganei-shi Tokyo 184-8588 Japan
| |
Collapse
|
3
|
Suto N, Kamoshita S, Hosoya S, Sakurai K. Exploration of the Reactivity of Multivalent Electrophiles for Affinity Labeling: Sulfonyl Fluoride as a Highly Efficient and Selective Label. Angew Chem Int Ed Engl 2021; 60:17080-17087. [PMID: 34060195 DOI: 10.1002/anie.202104347] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 05/16/2021] [Indexed: 12/23/2022]
Abstract
Here we explored the reactivity of a set of multivalent electrophiles cofunctionalized with a carbohydrate ligand on gold nanoparticles to achieve efficient affinity labeling for target protein analysis. Evaluation of the reactivity and selectivity of the electrophiles against three different cognate binding proteins identified arylsulfonyl fluoride as the most efficient protein-reactive group in this study. We demonstrated that multivalent arylsulfonyl fluoride probe 4 at 50 nm concentration achieved selective affinity labeling and enrichment of a model protein PNA in cell lysate, which was more effective than photoaffinity probe 1 with arylazide group. Labeling site analysis by LC-MS/MS revealed that the nanoparticle-immobilized arylsulfonyl fluoride group can target multiple amino acid residues around the ligand binding site of the target proteins. Our study highlights the utility of arylsulfonyl fluoride as a highly effective multivalent affinity label suitable for covalently capturing unknown target proteins.
Collapse
Affiliation(s)
- Nanako Suto
- Department of Bioengineering and Life Science, Tokyo University of Agriculture and Technology, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
| | - Shione Kamoshita
- Department of Bioengineering and Life Science, Tokyo University of Agriculture and Technology, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
| | - Shoichi Hosoya
- Institute of Research, Tokyo Medical and Dental University, 1-5-45, Yushima, Bunkyo-ku, Tokyo, 113-8510, Japan
| | - Kaori Sakurai
- Department of Bioengineering and Life Science, Tokyo University of Agriculture and Technology, 4-24-16, Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan
| |
Collapse
|
4
|
Lim Y, Kuang Y, Wu J, Yao SQ. Late‐Stage C(sp
2
)−H Functionalization: A Powerful Toolkit To Arm Natural Products for In Situ Proteome Profiling? Chemistry 2020; 27:3575-3580. [DOI: 10.1002/chem.202004373] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 11/04/2020] [Indexed: 12/17/2022]
Affiliation(s)
- Ying‐Jie Lim
- Department of Chemistry National University of Singapore 3 Science Drive 3 Singapore 117543 Singapore
| | - Yulong Kuang
- Department of Chemistry National University of Singapore 3 Science Drive 3 Singapore 117543 Singapore
| | - Jie Wu
- Department of Chemistry National University of Singapore 3 Science Drive 3 Singapore 117543 Singapore
| | - Shao Q. Yao
- Department of Chemistry National University of Singapore 3 Science Drive 3 Singapore 117543 Singapore
| |
Collapse
|
5
|
Chan HJ, Lin XH, Fan SY, Ru Hwu J, Tan KT. Rapid and Selective Labeling of Endogenous Transmembrane Proteins in Living Cells with a Difluorophenyl Ester Affinity-Based Probe. Chem Asian J 2020; 15:3416-3420. [PMID: 32931625 DOI: 10.1002/asia.202001049] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Indexed: 12/28/2022]
Abstract
The long-term stability of affinity-based protein labeling probes is crucial to obtain reproducible protein labeling results. However, highly stable probes generally suffer from low protein labeling efficiency and pose significant challenges when labeling low abundance native proteins in living cells. In this paper, we report that protein labeling probes based on an ortho-difluorophenyl ester reactive module exhibit long-term stability in DMSO stock solution and aqueous buffer, yet they can undergo rapid and selective labeling of native proteins. This novel electrophile can be customized with a wide range of different protein ligands and is particularly well-suited for the labeling and imaging of transmembrane proteins. With this probe design, the identity and relative levels of basal and hypoxia-induced transmembrane carbonic anhydrases were revealed by live cell imaging and in-gel fluorescence analysis. We believe that the extension of this difluorophenyl ester reactive module would allow for the specific labeling of various endogenous membrane proteins, facilitating in-depth studies of their distribution and functions in biological processes.
Collapse
Affiliation(s)
- Hsin-Ju Chan
- Department of Chemistry, National Tsing Hua University, 101 Section 2, Kuang Fu Road, Hsinchu, 30013, Taiwan (Republic of China
| | - Xin-Hui Lin
- Department of Chemistry, National Tsing Hua University, 101 Section 2, Kuang Fu Road, Hsinchu, 30013, Taiwan (Republic of China
| | - Syuan-Yun Fan
- Department of Chemistry, National Tsing Hua University, 101 Section 2, Kuang Fu Road, Hsinchu, 30013, Taiwan (Republic of China
| | - Jih Ru Hwu
- Department of Chemistry, National Tsing Hua University, 101 Section 2, Kuang Fu Road, Hsinchu, 30013, Taiwan (Republic of China.,Frontier Research Center on Fundamental and Applied Sciences of Matters, National Tsing Hua University, 101 Section 2, Kuang Fu Road, Hsinchu, 30013, Taiwan (Republic of China
| | - Kui-Thong Tan
- Department of Chemistry, National Tsing Hua University, 101 Section 2, Kuang Fu Road, Hsinchu, 30013, Taiwan (Republic of China.,Frontier Research Center on Fundamental and Applied Sciences of Matters, National Tsing Hua University, 101 Section 2, Kuang Fu Road, Hsinchu, 30013, Taiwan (Republic of China.,Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung, 807, Taiwan (Republic of China
| |
Collapse
|
6
|
Laraia L, Garivet G, Foley DJ, Kaiser N, Müller S, Zinken S, Pinkert T, Wilke J, Corkery D, Pahl A, Sievers S, Janning P, Arenz C, Wu Y, Rodriguez R, Waldmann H. Image‐Based Morphological Profiling Identifies a Lysosomotropic, Iron‐Sequestering Autophagy Inhibitor. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201913712] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Luca Laraia
- Department of Chemical Biology Max-Planck-Institute of Molecular Physiology Otto-Hahn-Strasse 11 44227 Dortmund Germany
- current address: Technical University of Denmark Department of Chemistry Kemitorvet 207 2800 Kgs. Lyngby Denmark
| | - Guillaume Garivet
- Department of Chemical Biology Max-Planck-Institute of Molecular Physiology Otto-Hahn-Strasse 11 44227 Dortmund Germany
- Faculty of Chemistry and Chemical Biology TU Dortmund Otto-Hahn-Strasse 6 44227 Dortmund Germany
| | - Daniel J. Foley
- Department of Chemical Biology Max-Planck-Institute of Molecular Physiology Otto-Hahn-Strasse 11 44227 Dortmund Germany
- current address: School of Physical and Chemical Sciences University of Canterbury Christchurch New Zealand
| | - Nadine Kaiser
- Department of Chemical Biology Max-Planck-Institute of Molecular Physiology Otto-Hahn-Strasse 11 44227 Dortmund Germany
- Faculty of Chemistry and Chemical Biology TU Dortmund Otto-Hahn-Strasse 6 44227 Dortmund Germany
| | - Sebastian Müller
- Institut Curie CNRS UMR 3666 INSERM U1143 PSL University Paris Chemical Cell Biology Group 26 Rue d'Ulm 75248 Paris Cedex 05 France
| | - Sarah Zinken
- Department of Chemical Biology Max-Planck-Institute of Molecular Physiology Otto-Hahn-Strasse 11 44227 Dortmund Germany
- Faculty of Chemistry and Chemical Biology TU Dortmund Otto-Hahn-Strasse 6 44227 Dortmund Germany
| | - Thomas Pinkert
- Institut für Chemie der Humboldt-Universität zu Berlin Brook-Taylor-Str. 2 (R 1'102) 12489 Berlin Germany
| | - Julian Wilke
- Department of Chemical Biology Max-Planck-Institute of Molecular Physiology Otto-Hahn-Strasse 11 44227 Dortmund Germany
- Faculty of Chemistry and Chemical Biology TU Dortmund Otto-Hahn-Strasse 6 44227 Dortmund Germany
| | - Dale Corkery
- Department of Chemistry Umeå Universitet KB.A4, Linnaeus väg 10 (rum: A4.35.07) 90187 Umeå Sweden
| | - Axel Pahl
- Compound Management and Screening Center, Dortmund Otto-Hahn-Str. 11 44227 Dortmund Germany
| | - Sonja Sievers
- Compound Management and Screening Center, Dortmund Otto-Hahn-Str. 11 44227 Dortmund Germany
| | - Petra Janning
- Department of Chemical Biology Max-Planck-Institute of Molecular Physiology Otto-Hahn-Strasse 11 44227 Dortmund Germany
- Faculty of Chemistry and Chemical Biology TU Dortmund Otto-Hahn-Strasse 6 44227 Dortmund Germany
| | - Christoph Arenz
- Institut für Chemie der Humboldt-Universität zu Berlin Brook-Taylor-Str. 2 (R 1'102) 12489 Berlin Germany
| | - Yaowen Wu
- Department of Chemistry Umeå Universitet KB.A4, Linnaeus väg 10 (rum: A4.35.07) 90187 Umeå Sweden
| | - Raphaël Rodriguez
- Institut Curie CNRS UMR 3666 INSERM U1143 PSL University Paris Chemical Cell Biology Group 26 Rue d'Ulm 75248 Paris Cedex 05 France
| | - Herbert Waldmann
- Department of Chemical Biology Max-Planck-Institute of Molecular Physiology Otto-Hahn-Strasse 11 44227 Dortmund Germany
- Faculty of Chemistry and Chemical Biology TU Dortmund Otto-Hahn-Strasse 6 44227 Dortmund Germany
| |
Collapse
|
7
|
Laraia L, Garivet G, Foley DJ, Kaiser N, Müller S, Zinken S, Pinkert T, Wilke J, Corkery D, Pahl A, Sievers S, Janning P, Arenz C, Wu Y, Rodriguez R, Waldmann H. Image-Based Morphological Profiling Identifies a Lysosomotropic, Iron-Sequestering Autophagy Inhibitor. Angew Chem Int Ed Engl 2020; 59:5721-5729. [PMID: 31769920 PMCID: PMC7154763 DOI: 10.1002/anie.201913712] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Indexed: 01/15/2023]
Abstract
Chemical proteomics is widely applied in small-molecule target identification. However, in general it does not identify non-protein small-molecule targets, and thus, alternative methods for target identification are in high demand. We report the discovery of the autophagy inhibitor autoquin and the identification of its molecular mode of action using image-based morphological profiling in the cell painting assay. A compound-induced fingerprint representing changes in 579 cellular parameters revealed that autoquin accumulates in lysosomes and inhibits their fusion with autophagosomes. In addition, autoquin sequesters Fe2+ in lysosomes, resulting in an increase of lysosomal reactive oxygen species and ultimately cell death. Such a mechanism of action would have been challenging to unravel by current methods. This work demonstrates the potential of the cell painting assay to deconvolute modes of action of small molecules, warranting wider application in chemical biology.
Collapse
Affiliation(s)
- Luca Laraia
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227, Dortmund, Germany.,current address: Technical University of Denmark, Department of Chemistry, Kemitorvet 207, 2800 Kgs., Lyngby, Denmark
| | - Guillaume Garivet
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227, Dortmund, Germany.,Faculty of Chemistry and Chemical Biology, TU Dortmund, Otto-Hahn-Strasse 6, 44227, Dortmund, Germany
| | - Daniel J Foley
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227, Dortmund, Germany.,current address: School of Physical and Chemical Sciences, University of Canterbury, Christchurch, New Zealand
| | - Nadine Kaiser
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227, Dortmund, Germany.,Faculty of Chemistry and Chemical Biology, TU Dortmund, Otto-Hahn-Strasse 6, 44227, Dortmund, Germany
| | - Sebastian Müller
- Institut Curie, CNRS UMR 3666, INSERM U1143, PSL University Paris, Chemical Cell Biology Group, 26 Rue d'Ulm, 75248, Paris Cedex 05, France
| | - Sarah Zinken
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227, Dortmund, Germany.,Faculty of Chemistry and Chemical Biology, TU Dortmund, Otto-Hahn-Strasse 6, 44227, Dortmund, Germany
| | - Thomas Pinkert
- Institut für Chemie der, Humboldt-Universität zu Berlin, Brook-Taylor-Str. 2 (R 1'102), 12489, Berlin, Germany
| | - Julian Wilke
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227, Dortmund, Germany.,Faculty of Chemistry and Chemical Biology, TU Dortmund, Otto-Hahn-Strasse 6, 44227, Dortmund, Germany
| | - Dale Corkery
- Department of Chemistry, Umeå Universitet, KB.A4, Linnaeus väg 10 (rum: A4.35.07), 90187, Umeå, Sweden
| | - Axel Pahl
- Compound Management and Screening Center, Dortmund, Otto-Hahn-Str. 11, 44227, Dortmund, Germany
| | - Sonja Sievers
- Compound Management and Screening Center, Dortmund, Otto-Hahn-Str. 11, 44227, Dortmund, Germany
| | - Petra Janning
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227, Dortmund, Germany.,Faculty of Chemistry and Chemical Biology, TU Dortmund, Otto-Hahn-Strasse 6, 44227, Dortmund, Germany
| | - Christoph Arenz
- Institut für Chemie der, Humboldt-Universität zu Berlin, Brook-Taylor-Str. 2 (R 1'102), 12489, Berlin, Germany
| | - Yaowen Wu
- Department of Chemistry, Umeå Universitet, KB.A4, Linnaeus väg 10 (rum: A4.35.07), 90187, Umeå, Sweden
| | - Raphaël Rodriguez
- Institut Curie, CNRS UMR 3666, INSERM U1143, PSL University Paris, Chemical Cell Biology Group, 26 Rue d'Ulm, 75248, Paris Cedex 05, France
| | - Herbert Waldmann
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227, Dortmund, Germany.,Faculty of Chemistry and Chemical Biology, TU Dortmund, Otto-Hahn-Strasse 6, 44227, Dortmund, Germany
| |
Collapse
|
8
|
Xu J, Li X, Ding K, Li Z. Applications of Activity-Based Protein Profiling (ABPP) and Bioimaging in Drug Discovery. Chem Asian J 2019; 15:34-41. [PMID: 31762171 DOI: 10.1002/asia.201901500] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Indexed: 01/12/2023]
Abstract
Activity-based protein profiling (ABPP) and bioimaging have been developed in recent years as powerful technologies in drug discovery. Specifically, both approaches can be applied in critical steps of drug development, such as therapy target discovery, high-throughput drug screening and target identification of bioactive molecules. We have been focused on the development of various strategies that enable simultaneous activity-based protein profiling and bioimaging studies, thus facilitating an understanding of drug actions and potential toxicities. In this Minireview, we summarize these novel strategies and applications, with the aim of promoting these technologies in drug discovery.
Collapse
Affiliation(s)
- Jiaqian Xu
- School of Pharmacy, Jinan University, Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China, 601 Huangpu Avenue West, Guangzhou, 510632, China.,Department of Chemistry, City University of Hong Kong, 83 Tat Chee Avenue, Hong Kong SAR, 999077, China
| | - Xiaoqian Li
- School of Pharmacy, Jinan University, Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China, 601 Huangpu Avenue West, Guangzhou, 510632, China
| | - Ke Ding
- School of Pharmacy, Jinan University, Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China, 601 Huangpu Avenue West, Guangzhou, 510632, China
| | - Zhengqiu Li
- School of Pharmacy, Jinan University, Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China, 601 Huangpu Avenue West, Guangzhou, 510632, China
| |
Collapse
|
9
|
Levy A, Leynes C, Baig M, Chew SA. The Application of Biomaterials in the Treatment of Platinum‐Resistant Ovarian Cancer. ChemMedChem 2019; 14:1810-1827. [DOI: 10.1002/cmdc.201900450] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Indexed: 12/26/2022]
Affiliation(s)
- Arkene Levy
- Department of Pharmacology, College of Medical Sciences Nova Southeastern University 3200 South University Drive Davie FL 33328 USA
| | - Carolina Leynes
- Department Health and Biomedical Sciences University of Texas Rio Grande Valley One West University Boulevard Brownsville TX 78520 USA
| | - Mirza Baig
- Dr. Kiran C. Patel College of Osteopathic Medicine Nova Southeastern University 3200 South University Drive Davie FL 33328 USA
| | - Sue Anne Chew
- Department Health and Biomedical Sciences University of Texas Rio Grande Valley One West University Boulevard Brownsville TX 78520 USA
| |
Collapse
|
10
|
Hayashi R, Morimoto S, Tomohiro T. Tag‐Convertible Photocrosslinker with Click‐On/OffN‐Acylsulfonamide Linkage for Protein Identification. Chem Asian J 2019; 14:3145-3148. [DOI: 10.1002/asia.201900859] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Revised: 07/26/2019] [Indexed: 12/25/2022]
Affiliation(s)
- Ryuji Hayashi
- Graduate School of Medicine and Pharmaceutical SciencesUniversity of Toyama 2630 Sugitani Toyama 930-0194 Japan
| | - Shota Morimoto
- Graduate School of Medicine and Pharmaceutical SciencesUniversity of Toyama 2630 Sugitani Toyama 930-0194 Japan
- Department of Pharmaceutical SciencesSuzuka University of Medical Science Suzuka Mie 510-0293 Japan
| | - Takenori Tomohiro
- Graduate School of Medicine and Pharmaceutical SciencesUniversity of Toyama 2630 Sugitani Toyama 930-0194 Japan
| |
Collapse
|
11
|
Chang Y, Zhu D, Guo H, Yin X, Ding K, Li Z. Crenolanib-Derived Probes Suitable for Cell- and Tissue-Based Protein Profiling and Single-Cell Imaging. Chembiochem 2019; 20:1783-1788. [PMID: 30942519 DOI: 10.1002/cbic.201900067] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Revised: 04/02/2019] [Indexed: 12/16/2022]
Abstract
Crenolanib (CP-868,596), a potent inhibitor of FLT3 and PDGFRα/β, is currently under phase III clinical investigation for the treatment of acute myeloid leukemia. However, the protein targets of Crenolanib in cancer cells remain obscure, which results in difficulties in understanding the mechanism of actions and side effects. To alleviate this issue, in this study, a photoaffinity probe and two fluorescent probes were created based on Crenolanib, followed by competitive protein profiling and bioimaging studies, with the aim of characterizing the cellular targets. A series of unknown protein hits, such as MAPK1, SHMT2, SLC25A11, and HIGD1A, were successfully identified by means of pull-down/LC-MS/MS; these might provide valuable clues for understanding drug action and potential toxicities. Moreover, the fluorescent probes are suitable for imaging drug distribution at the single-cell level.
Collapse
Affiliation(s)
- Yu Chang
- School of Pharmacy, Jinan University, Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine, Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China, 601 Huangpu Avenue West, Guangzhou, 510632, P.R. China
| | - Dongsheng Zhu
- Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, 190 Kaiyuan Avenue, Science Park, Guangzhou, 510530, P.R. China.,University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing, 100049, P.R. China
| | - Haijun Guo
- School of Pharmacy, Jinan University, Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine, Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China, 601 Huangpu Avenue West, Guangzhou, 510632, P.R. China
| | - Xingfeng Yin
- Key Laboratory of Functional Protein Research of Guangdong Higher, Education Institutes, Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University, 601 Huangpu Avenue West, Guangzhou, 510632, P.R. China
| | - Ke Ding
- School of Pharmacy, Jinan University, Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine, Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China, 601 Huangpu Avenue West, Guangzhou, 510632, P.R. China
| | - Zhengqiu Li
- School of Pharmacy, Jinan University, Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine, Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China, 601 Huangpu Avenue West, Guangzhou, 510632, P.R. China
| |
Collapse
|
12
|
Lim B, Lee J, Kim B, Lee R, Park J, Oh D, Gam J, Lee J. Target Identification of a 1,3,4‐Oxadiazin‐5(6
H
)‐One Anticancer Agent via Photoaffinity Labelling. ASIAN J ORG CHEM 2019. [DOI: 10.1002/ajoc.201900258] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Bumhee Lim
- College of PharmacyResearch Institute of Pharmaceutical sciencesSeoul National University 1 Gwanak-ro, Gwanak-gu Seoul 08826 Korea
| | - Jinah Lee
- College of PharmacyResearch Institute of Pharmaceutical sciencesSeoul National University 1 Gwanak-ro, Gwanak-gu Seoul 08826 Korea
| | - Byungjin Kim
- College of PharmacyResearch Institute of Pharmaceutical sciencesSeoul National University 1 Gwanak-ro, Gwanak-gu Seoul 08826 Korea
| | - Rang Lee
- College of PharmacyResearch Institute of Pharmaceutical sciencesSeoul National University 1 Gwanak-ro, Gwanak-gu Seoul 08826 Korea
| | - Jaehyun Park
- College of PharmacyResearch Institute of Pharmaceutical sciencesSeoul National University 1 Gwanak-ro, Gwanak-gu Seoul 08826 Korea
| | - Dong‐Chan Oh
- College of PharmacyResearch Institute of Pharmaceutical sciencesSeoul National University 1 Gwanak-ro, Gwanak-gu Seoul 08826 Korea
| | - Jongsik Gam
- Department of Medicinal BioscienceCollege of Interdisciplinary & Creative StudiesKonyang University 2121 Daehak-ro Nonsan, Chungnam 32992 Korea
| | - Jeeyeon Lee
- College of PharmacyResearch Institute of Pharmaceutical sciencesSeoul National University 1 Gwanak-ro, Gwanak-gu Seoul 08826 Korea
| |
Collapse
|
13
|
Hotta Y, Kaneko T, Hayashi R, Yamamoto A, Morimoto S, Chiba J, Tomohiro T. Photoinduced Electron Transfer‐Regulated Protein Labeling With a Coumarin‐Based Multifunctional Photocrosslinker. Chem Asian J 2019; 14:398-402. [DOI: 10.1002/asia.201801673] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2018] [Indexed: 01/04/2023]
Affiliation(s)
- Yusuke Hotta
- Graduate School of Medicine and Pharmaceutical SciencesUniversity of Toyama 2630 Sugitani Toyama 930-0194 Japan
| | - Tsukasa Kaneko
- Graduate School of Medicine and Pharmaceutical SciencesUniversity of Toyama 2630 Sugitani Toyama 930-0194 Japan
| | - Ryuji Hayashi
- Graduate School of Medicine and Pharmaceutical SciencesUniversity of Toyama 2630 Sugitani Toyama 930-0194 Japan
| | - Akito Yamamoto
- Graduate School of Medicine and Pharmaceutical SciencesUniversity of Toyama 2630 Sugitani Toyama 930-0194 Japan
| | - Shota Morimoto
- Graduate School of Medicine and Pharmaceutical SciencesUniversity of Toyama 2630 Sugitani Toyama 930-0194 Japan
- Department of Pharmaceutical SciencesSuzuka University of Medical Science Suzuka Mie 510-0293 Japan
| | - Junya Chiba
- Graduate School of Medicine and Pharmaceutical SciencesUniversity of Toyama 2630 Sugitani Toyama 930-0194 Japan
| | - Takenori Tomohiro
- Graduate School of Medicine and Pharmaceutical SciencesUniversity of Toyama 2630 Sugitani Toyama 930-0194 Japan
| |
Collapse
|
14
|
Zheng B, Guo H, Ma N, Ni Y, Xu J, Li L, Hao P, Ding K, Li Z. Cell- and Tissue-Based Proteome Profiling and Bioimaging with Probes Derived from a Potent AXL Kinase Inhibitor. Chem Asian J 2018; 13:2601-2605. [PMID: 29939481 DOI: 10.1002/asia.201800605] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Revised: 06/17/2018] [Indexed: 01/13/2023]
Affiliation(s)
- Binbin Zheng
- School of Pharmacy, Jinan University; Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Haijun Guo
- School of Pharmacy, Jinan University; Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Nan Ma
- School of Pharmacy, Jinan University; Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Yun Ni
- Institute of Advanced Materials (IAM); Nanjing Tech University; China
| | - Jiaqian Xu
- School of Pharmacy, Jinan University; Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Lin Li
- Institute of Advanced Materials (IAM); Nanjing Tech University; China
| | - Piliang Hao
- School of Life Science and Technology; ShanghaiTech University; China
| | - Ke Ding
- School of Pharmacy, Jinan University; Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Zhengqiu Li
- School of Pharmacy, Jinan University; Guangzhou City Key Laboratory of Precision Chemical Drug Development, International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development, Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| |
Collapse
|
15
|
Halder V, Oeljeklaus J, Heilmann G, Krahn JH, Liu Y, Xiong Y, Schlicht M, Schillinger J, Kracher B, Ehrmann M, Kombrink E, Kaschani F, Kaiser M. Identification of the Natural Product Rotihibin A as a TOR Kinase Signaling Inhibitor by Unbiased Transcriptional Profiling. Chemistry 2018; 24:12500-12504. [DOI: 10.1002/chem.201802647] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Revised: 06/20/2018] [Indexed: 12/13/2022]
Affiliation(s)
- Vivek Halder
- Chemical Biology, Zentrum für Medizinische Biotechnologie; Universität Duisburg-Essen; Universitätsstrasse 2 45117 Essen Germany
- Chemical Biology Laboratory; Max-Planck-Institute for Plant Breeding Research; Carl-von-Linnè-Weg 10 50829 Köln Germany
| | - Julian Oeljeklaus
- Chemical Biology, Zentrum für Medizinische Biotechnologie; Universität Duisburg-Essen; Universitätsstrasse 2 45117 Essen Germany
| | - Geronimo Heilmann
- Chemical Biology, Zentrum für Medizinische Biotechnologie; Universität Duisburg-Essen; Universitätsstrasse 2 45117 Essen Germany
| | - Jan H. Krahn
- Chemical Biology, Zentrum für Medizinische Biotechnologie; Universität Duisburg-Essen; Universitätsstrasse 2 45117 Essen Germany
| | - Yanlin Liu
- Basic Forestry and Proteomics Research Center; Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University; Fujian Province 350002 P.R. China
| | - Yan Xiong
- Basic Forestry and Proteomics Research Center; Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University; Fujian Province 350002 P.R. China
| | - Markus Schlicht
- Chemical Biology Laboratory; Max-Planck-Institute for Plant Breeding Research; Carl-von-Linnè-Weg 10 50829 Köln Germany
| | - Jasmin Schillinger
- Microbiology, Zentrum für Medizinische Biotechnologie; Universität Duisburg-Essen; Universitätsstrasse 2 45117 Essen Germany
| | - Barbara Kracher
- Bioinformatics, Department of Plant Microbe Interactions; Max-Planck-Institute for Plant Breeding Research; Carl-von-Linnè-Weg 10 50829 Köln Germany
| | - Michael Ehrmann
- Microbiology, Zentrum für Medizinische Biotechnologie; Universität Duisburg-Essen; Universitätsstrasse 2 45117 Essen Germany
| | - Erich Kombrink
- Chemical Biology Laboratory; Max-Planck-Institute for Plant Breeding Research; Carl-von-Linnè-Weg 10 50829 Köln Germany
| | - Farnusch Kaschani
- Chemical Biology, Zentrum für Medizinische Biotechnologie; Universität Duisburg-Essen; Universitätsstrasse 2 45117 Essen Germany
| | - Markus Kaiser
- Chemical Biology, Zentrum für Medizinische Biotechnologie; Universität Duisburg-Essen; Universitätsstrasse 2 45117 Essen Germany
| |
Collapse
|
16
|
Zhu D, Guo H, Chang Y, Ni Y, Li L, Zhang ZM, Hao P, Xu Y, Ding K, Li Z. Cell- and Tissue-Based Proteome Profiling and Dual Imaging of Apoptosis Markers with Probes Derived from Venetoclax and Idasanutlin. Angew Chem Int Ed Engl 2018; 57:9284-9289. [PMID: 29768700 DOI: 10.1002/anie.201802003] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Indexed: 01/17/2023]
Affiliation(s)
- Dongsheng Zhu
- Guangdong Provincial Key Laboratory of Biocomputing; Guangzhou Institutes of Biomedicine and Health; Chinese Academy of Sciences; 190 Kaiyuan Avenue, Science Park Guangzhou 510530 China
- University of Chinese Academy of Sciences; 19 Yuquan Road Beijing 100049 China
| | - Haijun Guo
- School of Pharmacy; Jinan University; Guangzhou City Key, Laboratory of Precision Chemical Drug Development; International Cooperative Laboratory of Traditional Chinese, Medicine Modernization and Innovative Drug Development; Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Yu Chang
- School of Pharmacy; Jinan University; Guangzhou City Key, Laboratory of Precision Chemical Drug Development; International Cooperative Laboratory of Traditional Chinese, Medicine Modernization and Innovative Drug Development; Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Yun Ni
- Institute of Advanced Materials (IAM); Nanjing Tech University; China
| | - Lin Li
- Institute of Advanced Materials (IAM); Nanjing Tech University; China
| | - Zhi-Min Zhang
- School of Pharmacy; Jinan University; Guangzhou City Key, Laboratory of Precision Chemical Drug Development; International Cooperative Laboratory of Traditional Chinese, Medicine Modernization and Innovative Drug Development; Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Piliang Hao
- School of Life Science and Technology; ShanghaiTech University; China
| | - Yong Xu
- Guangdong Provincial Key Laboratory of Biocomputing; Guangzhou Institutes of Biomedicine and Health; Chinese Academy of Sciences; 190 Kaiyuan Avenue, Science Park Guangzhou 510530 China
- University of Chinese Academy of Sciences; 19 Yuquan Road Beijing 100049 China
| | - Ke Ding
- School of Pharmacy; Jinan University; Guangzhou City Key, Laboratory of Precision Chemical Drug Development; International Cooperative Laboratory of Traditional Chinese, Medicine Modernization and Innovative Drug Development; Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Zhengqiu Li
- School of Pharmacy; Jinan University; Guangzhou City Key, Laboratory of Precision Chemical Drug Development; International Cooperative Laboratory of Traditional Chinese, Medicine Modernization and Innovative Drug Development; Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| |
Collapse
|
17
|
Zhu D, Guo H, Chang Y, Ni Y, Li L, Zhang ZM, Hao P, Xu Y, Ding K, Li Z. Cell- and Tissue-Based Proteome Profiling and Dual Imaging of Apoptosis Markers with Probes Derived from Venetoclax and Idasanutlin. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201802003] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Dongsheng Zhu
- Guangdong Provincial Key Laboratory of Biocomputing; Guangzhou Institutes of Biomedicine and Health; Chinese Academy of Sciences; 190 Kaiyuan Avenue, Science Park Guangzhou 510530 China
- University of Chinese Academy of Sciences; 19 Yuquan Road Beijing 100049 China
| | - Haijun Guo
- School of Pharmacy; Jinan University; Guangzhou City Key, Laboratory of Precision Chemical Drug Development; International Cooperative Laboratory of Traditional Chinese, Medicine Modernization and Innovative Drug Development; Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Yu Chang
- School of Pharmacy; Jinan University; Guangzhou City Key, Laboratory of Precision Chemical Drug Development; International Cooperative Laboratory of Traditional Chinese, Medicine Modernization and Innovative Drug Development; Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Yun Ni
- Institute of Advanced Materials (IAM); Nanjing Tech University; China
| | - Lin Li
- Institute of Advanced Materials (IAM); Nanjing Tech University; China
| | - Zhi-Min Zhang
- School of Pharmacy; Jinan University; Guangzhou City Key, Laboratory of Precision Chemical Drug Development; International Cooperative Laboratory of Traditional Chinese, Medicine Modernization and Innovative Drug Development; Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Piliang Hao
- School of Life Science and Technology; ShanghaiTech University; China
| | - Yong Xu
- Guangdong Provincial Key Laboratory of Biocomputing; Guangzhou Institutes of Biomedicine and Health; Chinese Academy of Sciences; 190 Kaiyuan Avenue, Science Park Guangzhou 510530 China
- University of Chinese Academy of Sciences; 19 Yuquan Road Beijing 100049 China
| | - Ke Ding
- School of Pharmacy; Jinan University; Guangzhou City Key, Laboratory of Precision Chemical Drug Development; International Cooperative Laboratory of Traditional Chinese, Medicine Modernization and Innovative Drug Development; Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Zhengqiu Li
- School of Pharmacy; Jinan University; Guangzhou City Key, Laboratory of Precision Chemical Drug Development; International Cooperative Laboratory of Traditional Chinese, Medicine Modernization and Innovative Drug Development; Ministry of Education (MOE) of People's Republic of China; 601 Huangpu Avenue West Guangzhou 510632 China
| |
Collapse
|
18
|
Gade NR, Iqbal J. Natural Product Inspired Topology Directed Synthesis of Hybrid Macrocyclic Compounds: A Simple Approach to Natural Product Analogues. ChemistrySelect 2018. [DOI: 10.1002/slct.201801117] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Narendar Reddy Gade
- Dr. Reddy's Institute of Life Sciences, University of Hyderabad Campus, Gachibowli; Hyderabad - 500046, Telangana India
- Department of Chemical and Life Science Engineering; Virginia Commonwealth University, Biotech Eight; Richmond, VA 23219 USA
| | - Javed Iqbal
- Dr. Reddy's Institute of Life Sciences, University of Hyderabad Campus, Gachibowli; Hyderabad - 500046, Telangana India
- Cosmic Discoveries Private Ltd. MaRS Discovery District; 101 College Street Toronto M5G 0B7 Canada
| |
Collapse
|
19
|
Wales SM, Merisor EG, Adcock HV, Pearce CA, Strutt IR, Lewis W, Hamza D, Moody CJ. Diastereoselective Synthesis of Highly Substituted, Amino- and Pyrrolidino-Tetrahydrofurans as Lead-Like Molecular Scaffolds. Chemistry 2018; 24:8233-8239. [DOI: 10.1002/chem.201801046] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Indexed: 01/15/2023]
Affiliation(s)
- Steven M. Wales
- School of Chemistry; University Park; University of Nottingham; Nottingham NG7 2RD United Kingdom
| | - Elena G. Merisor
- Sygnature Discovery Ltd, Biocity; Pennyfoot Street Nottingham NG1 1GF United Kingdom
| | - Holly V. Adcock
- Sygnature Discovery Ltd, Biocity; Pennyfoot Street Nottingham NG1 1GF United Kingdom
| | - Christopher A. Pearce
- Sygnature Discovery Ltd, Biocity; Pennyfoot Street Nottingham NG1 1GF United Kingdom
| | - Ian R. Strutt
- Sygnature Discovery Ltd, Biocity; Pennyfoot Street Nottingham NG1 1GF United Kingdom
| | - William Lewis
- School of Chemistry; University Park; University of Nottingham; Nottingham NG7 2RD United Kingdom
| | - Daniel Hamza
- Sygnature Discovery Ltd, Biocity; Pennyfoot Street Nottingham NG1 1GF United Kingdom
| | - Christopher J. Moody
- School of Chemistry; University Park; University of Nottingham; Nottingham NG7 2RD United Kingdom
| |
Collapse
|
20
|
Xie Y, Cheng L, Gao Y, Cai X, Yang X, Yi L, Xi Z. Tetrafluorination of Aromatic Azide Yields a Highly Efficient Staudinger Reaction: Kinetics and Biolabeling. Chem Asian J 2018; 13:1791-1796. [PMID: 29714052 DOI: 10.1002/asia.201800503] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2018] [Revised: 04/30/2018] [Indexed: 02/28/2024]
Abstract
The development of highly efficient bioorthogonal reactions is of paramount importance for the research fields of biomaterials and chemical biology. We found that the o,o'-difluorinated aromatic azide was able to react with triphenylphosphine to produce water-stable phosphanimine. To further improve the efficiency of this kind of nonhydrolysis Staudinger reaction, a tetrafluorinated aromatic azide was employed to develop a faster nonhydrolysis Staudinger reaction with a rate of up to 51 m-1 s-1 , as revealed by high-performance liquid chromatography (HPLC) analysis and fluorescence kinetics. As a proof-of-concept study, the highly efficient Staudinger reaction was successfully used for chemoselective fluorescence labeling of proteins and nucleic acids (DNA and RNA) as well as for protein polyethyleneglycol (PEG)ylation. We believe that this bioorthogonal reaction can provide a broadly useful tool for various bioconjugations.
Collapse
Affiliation(s)
- Yonghui Xie
- State Key Laboratory of Elemento-Organic Chemistry and Department of Chemical Biology, National Pesticide Engineering Research Center (Tianjin), Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), College of Chemistry, Nankai University, China
| | - Longhuai Cheng
- State Key Laboratory of Elemento-Organic Chemistry and Department of Chemical Biology, National Pesticide Engineering Research Center (Tianjin), Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), College of Chemistry, Nankai University, China
| | - Yasi Gao
- State Key Laboratory of Organic-Inorganic Composites, Beijing University of Chemical Technology (BUCT), Beijing, 100029, China
| | - Xuekang Cai
- State Key Laboratory of Organic-Inorganic Composites, Beijing University of Chemical Technology (BUCT), Beijing, 100029, China
- Department of Nuclear Medicine, Peking University First Hospital, Beijing, 100034, China
| | - Xing Yang
- Department of Nuclear Medicine, Peking University First Hospital, Beijing, 100034, China
| | - Long Yi
- State Key Laboratory of Organic-Inorganic Composites, Beijing University of Chemical Technology (BUCT), Beijing, 100029, China
| | - Zhen Xi
- State Key Laboratory of Elemento-Organic Chemistry and Department of Chemical Biology, National Pesticide Engineering Research Center (Tianjin), Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), College of Chemistry, Nankai University, China
| |
Collapse
|
21
|
Kremer L, Schultz-Fademrecht C, Baumann M, Habenberger P, Choidas A, Klebl B, Kordes S, Schöler HR, Sterneckert J, Ziegler S, Schneider G, Waldmann H. Discovery of a Novel Inhibitor of the Hedgehog Signaling Pathway through Cell-based Compound Discovery and Target Prediction. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201707394] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Lea Kremer
- Abteilung für Chemische Biologie; Max-Planck-Institut für Molekulare Physiologie; Otto-Hahn-Straße 11 44227 Dortmund Germany
- Fakultät für Chemie und Chemische Biologie; Technische Universität Dortmund; Otto-Hahn-Straße 6 44227 Dortmund Germany
| | | | - Matthias Baumann
- Lead Discovery Center GmbH; Otto-Hahn-Straße 15 44227 Dortmund Germany
| | - Peter Habenberger
- Lead Discovery Center GmbH; Otto-Hahn-Straße 15 44227 Dortmund Germany
| | - Axel Choidas
- Lead Discovery Center GmbH; Otto-Hahn-Straße 15 44227 Dortmund Germany
| | - Bert Klebl
- Lead Discovery Center GmbH; Otto-Hahn-Straße 15 44227 Dortmund Germany
| | - Susanne Kordes
- Lead Discovery Center GmbH; Otto-Hahn-Straße 15 44227 Dortmund Germany
- Abteilung Zell- und Entwicklungsbiologie; Max-Planck-Institut für Molekulare Biomedizin; Röntgenstraße 20 48149 Münster Germany
| | - Hans R. Schöler
- Abteilung Zell- und Entwicklungsbiologie; Max-Planck-Institut für Molekulare Biomedizin; Röntgenstraße 20 48149 Münster Germany
| | - Jared Sterneckert
- Abteilung Zell- und Entwicklungsbiologie; Max-Planck-Institut für Molekulare Biomedizin; Röntgenstraße 20 48149 Münster Germany
- DFG-Center for Regenerative Therapies; Cluster of Excellence; Technische Universität Dresden; Fetscherstr. 105 01307 Dresden Germany
| | - Slava Ziegler
- Abteilung für Chemische Biologie; Max-Planck-Institut für Molekulare Physiologie; Otto-Hahn-Straße 11 44227 Dortmund Germany
| | - Gisbert Schneider
- Institut für Pharmazeutische Wissenschaften; Departement Chemie und Angewandte Biowissenschaften; ETH Zürich; Vladimir-Prelog-Weg 4 8093 Zurich Switzerland
| | - Herbert Waldmann
- Abteilung für Chemische Biologie; Max-Planck-Institut für Molekulare Physiologie; Otto-Hahn-Straße 11 44227 Dortmund Germany
- Fakultät für Chemie und Chemische Biologie; Technische Universität Dortmund; Otto-Hahn-Straße 6 44227 Dortmund Germany
| |
Collapse
|
22
|
Kremer L, Schultz-Fademrecht C, Baumann M, Habenberger P, Choidas A, Klebl B, Kordes S, Schöler HR, Sterneckert J, Ziegler S, Schneider G, Waldmann H. Discovery of a Novel Inhibitor of the Hedgehog Signaling Pathway through Cell-based Compound Discovery and Target Prediction. Angew Chem Int Ed Engl 2017; 56:13021-13025. [PMID: 28833911 DOI: 10.1002/anie.201707394] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2017] [Indexed: 01/20/2023]
Abstract
Cell-based assays enable monitoring of small-molecule bioactivity in a target-agnostic manner and help uncover new biological mechanisms. Subsequent identification and validation of the small-molecule targets, typically employing proteomics techniques, is very challenging and limited, in particular if the targets are membrane proteins. Herein, we demonstrate that the combination of cell-based bioactive-compound discovery with cheminformatic target prediction may provide an efficient approach to accelerate the process and render target identification and validation more efficient. Using a cell-based assay, we identified the pyrazolo-imidazole smoothib as a new inhibitor of hedgehog (Hh) signaling and an antagonist of the protein smoothened (SMO) with a novel chemotype. Smoothib targets the heptahelical bundle of SMO, prevents its ciliary localization, reduces the expression of Hh target genes, and suppresses the growth of Ptch+/- medulloblastoma cells.
Collapse
Affiliation(s)
- Lea Kremer
- Abteilung für Chemische Biologie, Max-Planck-Institut für Molekulare Physiologie, Otto-Hahn-Straße 11, 44227, Dortmund, Germany.,Fakultät für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 6, 44227, Dortmund, Germany
| | | | - Matthias Baumann
- Lead Discovery Center GmbH, Otto-Hahn-Straße 15, 44227, Dortmund, Germany
| | - Peter Habenberger
- Lead Discovery Center GmbH, Otto-Hahn-Straße 15, 44227, Dortmund, Germany
| | - Axel Choidas
- Lead Discovery Center GmbH, Otto-Hahn-Straße 15, 44227, Dortmund, Germany
| | - Bert Klebl
- Lead Discovery Center GmbH, Otto-Hahn-Straße 15, 44227, Dortmund, Germany
| | - Susanne Kordes
- Lead Discovery Center GmbH, Otto-Hahn-Straße 15, 44227, Dortmund, Germany.,Abteilung Zell- und Entwicklungsbiologie, Max-Planck-Institut für Molekulare Biomedizin, Röntgenstraße 20, 48149, Münster, Germany
| | - Hans R Schöler
- Abteilung Zell- und Entwicklungsbiologie, Max-Planck-Institut für Molekulare Biomedizin, Röntgenstraße 20, 48149, Münster, Germany
| | - Jared Sterneckert
- Abteilung Zell- und Entwicklungsbiologie, Max-Planck-Institut für Molekulare Biomedizin, Röntgenstraße 20, 48149, Münster, Germany.,DFG-Center for Regenerative Therapies, Cluster of Excellence, Technische Universität Dresden, Fetscherstr. 105, 01307, Dresden, Germany
| | - Slava Ziegler
- Abteilung für Chemische Biologie, Max-Planck-Institut für Molekulare Physiologie, Otto-Hahn-Straße 11, 44227, Dortmund, Germany
| | - Gisbert Schneider
- Institut für Pharmazeutische Wissenschaften, Departement Chemie und Angewandte Biowissenschaften, ETH Zürich, Vladimir-Prelog-Weg 4, 8093, Zurich, Switzerland
| | - Herbert Waldmann
- Abteilung für Chemische Biologie, Max-Planck-Institut für Molekulare Physiologie, Otto-Hahn-Straße 11, 44227, Dortmund, Germany.,Fakultät für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 6, 44227, Dortmund, Germany
| |
Collapse
|
23
|
Pan S, Jang SY, Wang D, Liew SS, Li Z, Lee JS, Yao SQ. A Suite of “Minimalist” Photo-Crosslinkers for Live-Cell Imaging and Chemical Proteomics: Case Study with BRD4 Inhibitors. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201706076] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Sijun Pan
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
| | - Se-Young Jang
- Molecular Recognition Research Center; Bio-Med Program of KIST-School UST; Korea Institute of Science & Technology; Hwarangno 14-gil 5, Seongbuk-gu Seoul 136-791 Korea
| | - Danyang Wang
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
| | - Si Si Liew
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
| | - Zhengqiu Li
- College of Pharmacy; Jinan University; Guangzhou 510632 China
| | - Jun-Seok Lee
- Molecular Recognition Research Center; Bio-Med Program of KIST-School UST; Korea Institute of Science & Technology; Hwarangno 14-gil 5, Seongbuk-gu Seoul 136-791 Korea
| | - Shao Q. Yao
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
| |
Collapse
|
24
|
Pan S, Jang SY, Wang D, Liew SS, Li Z, Lee JS, Yao SQ. A Suite of "Minimalist" Photo-Crosslinkers for Live-Cell Imaging and Chemical Proteomics: Case Study with BRD4 Inhibitors. Angew Chem Int Ed Engl 2017; 56:11816-11821. [PMID: 28783236 DOI: 10.1002/anie.201706076] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Revised: 07/28/2017] [Indexed: 11/08/2022]
Abstract
Affinity-based probes (AfBPs) provide a powerful tool for large-scale chemoproteomic studies of drug-target interactions. The development of high-quality probes capable of recapitulating genuine drug-target engagement, however, could be challenging. "Minimalist" photo-crosslinkers, which contain an alkyl diazirine group and a chemically tractable tag, could alleviate such challenges, but few are currently available. Herein, we have developed new alkyl diazirine-containing photo-crosslinkers with different bioorthogonal tags. They were subsequently used to create a suite of AfBPs based on GW841819X (a small molecule inhibitor of BRD4). Through in vitro and in situ studies under conditions that emulated native drug-target interactions, we have obtained better insights into how a tag might affect the probe's performance. Finally, SILAC-based chemoproteomic studies have led to the discovery of a novel off-target, APEX1. Further studies showed GW841819X binds to APEX1 and caused up-regulation of endogenous DNMT1 expression under normoxia conditions.
Collapse
Affiliation(s)
- Sijun Pan
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore, 117543, Singapore
| | - Se-Young Jang
- Molecular Recognition Research Center, Bio-Med Program of KIST-School UST, Korea Institute of Science & Technology, Hwarangno 14-gil 5, Seongbuk-gu, Seoul, 136-791, Korea
| | - Danyang Wang
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore, 117543, Singapore
| | - Si Si Liew
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore, 117543, Singapore
| | - Zhengqiu Li
- College of Pharmacy, Jinan University, Guangzhou, 510632, China
| | - Jun-Seok Lee
- Molecular Recognition Research Center, Bio-Med Program of KIST-School UST, Korea Institute of Science & Technology, Hwarangno 14-gil 5, Seongbuk-gu, Seoul, 136-791, Korea
| | - Shao Q Yao
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore, 117543, Singapore
| |
Collapse
|
25
|
Wang DY, Cao Y, Zheng LY, Chen LD, Chen XF, Hong ZY, Zhu ZY, Li X, Chai YF. Target Identification of Kinase Inhibitor Alisertib (MLN8237) by Using DNA-Programmed Affinity Labeling. Chemistry 2017; 23:10906-10914. [DOI: 10.1002/chem.201702033] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2017] [Indexed: 12/22/2022]
Affiliation(s)
- Dong-Yao Wang
- School of Pharmacy; Second Military Medical University; No. 325 Guohe Road Shanghai 200433 P.R. China
| | - Yan Cao
- School of Pharmacy; Second Military Medical University; No. 325 Guohe Road Shanghai 200433 P.R. China
| | - Le-Yi Zheng
- School of Pharmacy; Second Military Medical University; No. 325 Guohe Road Shanghai 200433 P.R. China
| | - Lang-Dong Chen
- School of Pharmacy; Second Military Medical University; No. 325 Guohe Road Shanghai 200433 P.R. China
| | - Xiao-Fei Chen
- School of Pharmacy; Second Military Medical University; No. 325 Guohe Road Shanghai 200433 P.R. China
| | - Zhan-Ying Hong
- School of Pharmacy; Second Military Medical University; No. 325 Guohe Road Shanghai 200433 P.R. China
| | - Zhen-Yu Zhu
- School of Pharmacy; Second Military Medical University; No. 325 Guohe Road Shanghai 200433 P.R. China
| | - Xiaoyu Li
- Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong SAR China
| | - Yi-Feng Chai
- School of Pharmacy; Second Military Medical University; No. 325 Guohe Road Shanghai 200433 P.R. China
| |
Collapse
|
26
|
Fung SK, Zou T, Cao B, Lee PY, Fung YME, Hu D, Lok CN, Che CM. Cyclometalated Gold(III) Complexes Containing N-Heterocyclic Carbene Ligands Engage Multiple Anti-Cancer Molecular Targets. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201612583] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Sin Ki Fung
- State Key Laboratory of Synthetic Chemistry; Institute of Molecular Functional Materials; Chemical Biology Centre and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong China
| | - Taotao Zou
- State Key Laboratory of Synthetic Chemistry; Institute of Molecular Functional Materials; Chemical Biology Centre and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong China
| | - Bei Cao
- State Key Laboratory of Synthetic Chemistry; Institute of Molecular Functional Materials; Chemical Biology Centre and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong China
| | - Pui-Yan Lee
- State Key Laboratory of Synthetic Chemistry; Institute of Molecular Functional Materials; Chemical Biology Centre and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong China
| | - Yi Man Eva Fung
- State Key Laboratory of Synthetic Chemistry; Institute of Molecular Functional Materials; Chemical Biology Centre and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong China
| | - Di Hu
- State Key Laboratory of Synthetic Chemistry; Institute of Molecular Functional Materials; Chemical Biology Centre and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong China
| | - Chun-Nam Lok
- State Key Laboratory of Synthetic Chemistry; Institute of Molecular Functional Materials; Chemical Biology Centre and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong China
| | - Chi-Ming Che
- State Key Laboratory of Synthetic Chemistry; Institute of Molecular Functional Materials; Chemical Biology Centre and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong China
- HKU Shenzhen Institute of Research and Innovation; Shenzhen 518053 China
| |
Collapse
|
27
|
Fung SK, Zou T, Cao B, Lee PY, Fung YME, Hu D, Lok CN, Che CM. Cyclometalated Gold(III) Complexes Containing N-Heterocyclic Carbene Ligands Engage Multiple Anti-Cancer Molecular Targets. Angew Chem Int Ed Engl 2017; 56:3892-3896. [PMID: 28247451 DOI: 10.1002/anie.201612583] [Citation(s) in RCA: 98] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2016] [Indexed: 01/03/2023]
Abstract
Metal N-heterocyclic carbene (NHC) complexes are a promising class of anti-cancer agents displaying potent in vitro and in vivo activities. Taking a multi-faceted approach employing two clickable photoaffinity probes, herein we report the identification of multiple molecular targets for anti-cancer active pincer gold(III) NHC complexes. These complexes display potent and selective cytotoxicity against cultured cancer cells and in vivo anti-tumor activities in mice bearing xenografts of human cervical and lung cancers. Our experiments revealed the specific engagement of the gold(III) complexes with multiple cellular targets, including HSP60, vimentin, nucleophosmin, and YB-1, accompanied by expected downstream mechanisms of action. Additionally, PtII and PdII analogues can also bind the cellular proteins targeted by the gold(III) complexes, uncovering a distinct pincer cyclometalated metal-NHC scaffold in the design of anti-cancer metal medicines with multiple molecular targets.
Collapse
Affiliation(s)
- Sin Ki Fung
- State Key Laboratory of Synthetic Chemistry, Institute of Molecular Functional Materials, Chemical Biology Centre and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Taotao Zou
- State Key Laboratory of Synthetic Chemistry, Institute of Molecular Functional Materials, Chemical Biology Centre and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Bei Cao
- State Key Laboratory of Synthetic Chemistry, Institute of Molecular Functional Materials, Chemical Biology Centre and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Pui-Yan Lee
- State Key Laboratory of Synthetic Chemistry, Institute of Molecular Functional Materials, Chemical Biology Centre and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Yi Man Eva Fung
- State Key Laboratory of Synthetic Chemistry, Institute of Molecular Functional Materials, Chemical Biology Centre and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Di Hu
- State Key Laboratory of Synthetic Chemistry, Institute of Molecular Functional Materials, Chemical Biology Centre and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Chun-Nam Lok
- State Key Laboratory of Synthetic Chemistry, Institute of Molecular Functional Materials, Chemical Biology Centre and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Chi-Ming Che
- State Key Laboratory of Synthetic Chemistry, Institute of Molecular Functional Materials, Chemical Biology Centre and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China.,HKU Shenzhen Institute of Research and Innovation, Shenzhen, 518053, China
| |
Collapse
|
28
|
Sinn S, Biedermann F, De Cola L. Platinum Complex Assemblies as Luminescent Probes and Tags for Drugs and Toxins in Water. Chemistry 2017; 23:1965-1971. [DOI: 10.1002/chem.201605169] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2016] [Indexed: 01/06/2023]
Affiliation(s)
- Stephan Sinn
- Institut de Science et d'Ingénierie Supramoléculaires (ISIS); Université de Strasbourg & CNRS; 8 Rue Gaspard Monge 67000 Strasbourg France
| | - Frank Biedermann
- Institute for Nanotechnology (INT); Karlsruhe Institute of Technology; Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Germany
| | - Luisa De Cola
- Institut de Science et d'Ingénierie Supramoléculaires (ISIS); Université de Strasbourg & CNRS; 8 Rue Gaspard Monge 67000 Strasbourg France
- Institute for Nanotechnology (INT); Karlsruhe Institute of Technology; Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Germany
| |
Collapse
|
29
|
Doherty W, Adler N, Knox A, Nolan D, McGouran J, Nikalje AP, Lokwani D, Sarkate A, Evans P. Synthesis and Evaluation of 1,2,3-Triazole-Containing Vinyl and Allyl Sulfones as Anti-Trypanosomal Agents. European J Org Chem 2017. [DOI: 10.1002/ejoc.201601221] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- William Doherty
- Centre for Synthesis and Chemical Biology; School of Chemistry; University College Dublin; 4 Dublin Ireland
| | - Nikoletta Adler
- School of Biochemistry and Immunology; Trinity Biomedical Sciences Institute; Trinity College Dublin; Pearse Street 2 Dublin Ireland
| | - Andrew Knox
- School of Biochemistry and Immunology; Trinity Biomedical Sciences Institute; Trinity College Dublin; Pearse Street 2 Dublin Ireland
- School of Biological Sciences; Dublin Institute of Technology; Kevin Street 8 Dublin Ireland
| | - Derek Nolan
- School of Biochemistry and Immunology; Trinity Biomedical Sciences Institute; Trinity College Dublin; Pearse Street 2 Dublin Ireland
| | - Joanna McGouran
- School of Chemistry; Trinity Biomedical Sciences Institute; Trinity College Dublin; Pearse Street 2 Dublin Ireland
| | - Anna Pratima Nikalje
- Y. B. Chavan College of Pharmacy; Dr. Rafiq Zakaria Campus 431001 Aurangabad Maharashtra India
| | - Deepak Lokwani
- Y. B. Chavan College of Pharmacy; Dr. Rafiq Zakaria Campus 431001 Aurangabad Maharashtra India
| | - Aniket Sarkate
- Department of Chemical Technology; Dr. Babasaheb Ambedkar Marathwada University; 431004 Aurangabad Maharashtra India
| | - Paul Evans
- Centre for Synthesis and Chemical Biology; School of Chemistry; University College Dublin; 4 Dublin Ireland
| |
Collapse
|
30
|
Arai MA, Taguchi S, Komatsuzaki K, Uchiyama K, Masuda A, Sampei M, Satoh M, Kado S, Ishibashi M. Valosin-containing Protein is a Target of 5'-l Fuligocandin B and Enhances TRAIL Resistance in Cancer Cells. ChemistryOpen 2016; 5:574-579. [PMID: 28032027 PMCID: PMC5167318 DOI: 10.1002/open.201600081] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2016] [Indexed: 01/25/2023] Open
Abstract
Fuligocandin B (2) is a novel natural product that can overcome TRAIL resistance. We synthesized enatiomerically pure fuligocandin B (2) and its derivative 5′‐I fuligocandin B (4), and found that the latter had an improved biological activity against the human gastric cancer cell line, AGS. We attached a biotin linker and photoactivatable aryl diazirine group to 5′‐I fuligocandin B (4), and employed a pull‐down assay to identify valosin‐containing protein (VCP/p97), an AAA ATPase, as a 5′‐I fuligocandin B (4) target protein. Knock‐down of VCP by siRNA enhanced sensitivity to TRAIL in AGS cells. In addition, 4 enhanced CHOP and DR5 protein expression, and overall intracellular levels of ubiquitinated protein. These data suggest that endoplasmic reticulum stress caused through VCP inhibition by 4 increases CHOP‐mediated DR5 up‐regulation, which enhances TRAIL‐induced cell death in AGS cells. To the best of our knowledge, this is the first example to show a relationship between VCP and TRAIL‐resistance‐overcoming activity in cancer cells.
Collapse
Affiliation(s)
- Midori A Arai
- Graduate School of Pharmaceutical Sciences Chiba University 1-8-1 Inohana, Chuo-ku Chiba 260-8675 Japan
| | - Shota Taguchi
- Graduate School of Pharmaceutical Sciences Chiba University 1-8-1 Inohana, Chuo-ku Chiba 260-8675 Japan
| | - Kazuhiro Komatsuzaki
- Graduate School of Pharmaceutical Sciences Chiba University 1-8-1 Inohana, Chuo-ku Chiba 260-8675 Japan
| | - Kento Uchiyama
- Graduate School of Pharmaceutical Sciences Chiba University 1-8-1 Inohana, Chuo-ku Chiba 260-8675 Japan
| | - Ayaka Masuda
- Graduate School of Pharmaceutical Sciences Chiba University 1-8-1 Inohana, Chuo-ku Chiba 260-8675 Japan
| | - Mana Sampei
- Graduate School of Pharmaceutical Sciences Chiba University 1-8-1 Inohana, Chuo-ku Chiba 260-8675 Japan
| | - Mamoru Satoh
- Division of Clinical Mass Spectrometry Chiba University Hospital 1-8-1 Inohana, Chuo-ku Chiba260-8670 Japan; Chemical Analysis Center Chiba University 1-33 Yayoi-cho, Inage-ku Chiba263-8522 Japan
| | - Sayaka Kado
- Chemical Analysis Center Chiba University 1-33 Yayoi-cho, Inage-ku Chiba 263-8522 Japan
| | - Masami Ishibashi
- Graduate School of Pharmaceutical Sciences Chiba University 1-8-1 Inohana, Chuo-ku Chiba 260-8675 Japan
| |
Collapse
|
31
|
Zhang CJ, Wang J, Zhang J, Lee YM, Feng G, Lim TK, Shen HM, Lin Q, Liu B. Mechanism-Guided Design and Synthesis of a Mitochondria-Targeting Artemisinin Analogue with Enhanced Anticancer Activity. Angew Chem Int Ed Engl 2016; 55:13770-13774. [DOI: 10.1002/anie.201607303] [Citation(s) in RCA: 73] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2016] [Indexed: 11/08/2022]
Affiliation(s)
- Chong-Jing Zhang
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585 Singapore
| | - Jigang Wang
- The State Key Laboratory of Pharmaceutical Biotechnology; College of Life Science; Nanjing University; Nanjing 210023 China
- Department of Biological Science; National University of Singapore; 14 Science Drive 4 Singapore 117543 Singapore
| | - Jianbin Zhang
- Department of Physiology; Yong Loo Lin School of Medicine; National University of Singapore; 2 Medical Drive Singapore 117597 Singapore
| | - Yew Mun Lee
- Department of Biological Science; National University of Singapore; 14 Science Drive 4 Singapore 117543 Singapore
| | - Guangxue Feng
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585 Singapore
| | - Teck Kwang Lim
- Department of Biological Science; National University of Singapore; 14 Science Drive 4 Singapore 117543 Singapore
| | - Han-Ming Shen
- Department of Physiology; Yong Loo Lin School of Medicine; National University of Singapore; 2 Medical Drive Singapore 117597 Singapore
| | - Qingsong Lin
- Department of Biological Science; National University of Singapore; 14 Science Drive 4 Singapore 117543 Singapore
| | - Bin Liu
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585 Singapore
- Institute of Materials Research and Engineering; 2 Fusionopolis Way Singapore 138634 Singapore
| |
Collapse
|
32
|
Zhang CJ, Wang J, Zhang J, Lee YM, Feng G, Lim TK, Shen HM, Lin Q, Liu B. Mechanism-Guided Design and Synthesis of a Mitochondria-Targeting Artemisinin Analogue with Enhanced Anticancer Activity. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201607303] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Chong-Jing Zhang
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585 Singapore
| | - Jigang Wang
- The State Key Laboratory of Pharmaceutical Biotechnology; College of Life Science; Nanjing University; Nanjing 210023 China
- Department of Biological Science; National University of Singapore; 14 Science Drive 4 Singapore 117543 Singapore
| | - Jianbin Zhang
- Department of Physiology; Yong Loo Lin School of Medicine; National University of Singapore; 2 Medical Drive Singapore 117597 Singapore
| | - Yew Mun Lee
- Department of Biological Science; National University of Singapore; 14 Science Drive 4 Singapore 117543 Singapore
| | - Guangxue Feng
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585 Singapore
| | - Teck Kwang Lim
- Department of Biological Science; National University of Singapore; 14 Science Drive 4 Singapore 117543 Singapore
| | - Han-Ming Shen
- Department of Physiology; Yong Loo Lin School of Medicine; National University of Singapore; 2 Medical Drive Singapore 117597 Singapore
| | - Qingsong Lin
- Department of Biological Science; National University of Singapore; 14 Science Drive 4 Singapore 117543 Singapore
| | - Bin Liu
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585 Singapore
- Institute of Materials Research and Engineering; 2 Fusionopolis Way Singapore 138634 Singapore
| |
Collapse
|
33
|
Hu D, Liu Y, Lai YT, Tong KC, Fung YM, Lok CN, Che CM. Anticancer Gold(III) Porphyrins Target Mitochondrial Chaperone Hsp60. Angew Chem Int Ed Engl 2015; 55:1387-91. [DOI: 10.1002/anie.201509612] [Citation(s) in RCA: 89] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2015] [Indexed: 01/01/2023]
Affiliation(s)
- Di Hu
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| | - Yungen Liu
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| | - Yau-Tsz Lai
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| | - Ka-Chung Tong
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| | - Yi-Man Fung
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| | - Chun-Nam Lok
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| | - Chi-Ming Che
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| |
Collapse
|
34
|
Hu D, Liu Y, Lai YT, Tong KC, Fung YM, Lok CN, Che CM. Anticancer Gold(III) Porphyrins Target Mitochondrial Chaperone Hsp60. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201509612] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Di Hu
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| | - Yungen Liu
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| | - Yau-Tsz Lai
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| | - Ka-Chung Tong
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| | - Yi-Man Fung
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| | - Chun-Nam Lok
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| | - Chi-Ming Che
- State Key Laboratory of Synthetic Chemistry, Chemical Biology Center, and Department of Chemistry; The University of Hong Kong; Pokfulam Road Hong Kong Hong Kong
| |
Collapse
|
35
|
Gamo AM, González-Vera JA, Rueda-Zubiaurre A, Alonso D, Vázquez-Villa H, Martín-Couce L, Palomares Ó, López JA, Martín-Fontecha M, Benhamú B, López-Rodríguez ML, Ortega-Gutiérrez S. Chemoproteomic Approach to Explore the Target Profile of GPCR ligands: Application to 5-HT1A
and 5-HT6
Receptors. Chemistry 2015; 22:1313-21. [DOI: 10.1002/chem.201503101] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2015] [Indexed: 12/20/2022]
Affiliation(s)
- Ana M. Gamo
- Departamento de Química Orgánica I; Facultad de Ciencias Químicas; Universidad Complutense de Madrid; 28040 Madrid Spain
| | - Juan A. González-Vera
- Departamento de Química Orgánica I; Facultad de Ciencias Químicas; Universidad Complutense de Madrid; 28040 Madrid Spain
| | - Ainoa Rueda-Zubiaurre
- Departamento de Química Orgánica I; Facultad de Ciencias Químicas; Universidad Complutense de Madrid; 28040 Madrid Spain
| | - Dulce Alonso
- Departamento de Química Orgánica I; Facultad de Ciencias Químicas; Universidad Complutense de Madrid; 28040 Madrid Spain
| | - Henar Vázquez-Villa
- Departamento de Química Orgánica I; Facultad de Ciencias Químicas; Universidad Complutense de Madrid; 28040 Madrid Spain
| | - Lidia Martín-Couce
- Departamento de Química Orgánica I; Facultad de Ciencias Químicas; Universidad Complutense de Madrid; 28040 Madrid Spain
| | - Óscar Palomares
- Departamento de Bioquímica y Biología Molecular I; Facultad de Ciencias Químicas; Universidad Complutense de Madrid; 28040 Madrid Spain
| | - Juan A. López
- Proteomics Unit; Centro Nacional de Investigaciones Cardiovasculares, CNIC; 28029 Madrid Spain
| | - Mar Martín-Fontecha
- Departamento de Química Orgánica I; Facultad de Ciencias Químicas; Universidad Complutense de Madrid; 28040 Madrid Spain
| | - Bellinda Benhamú
- Departamento de Química Orgánica I; Facultad de Ciencias Químicas; Universidad Complutense de Madrid; 28040 Madrid Spain
| | - María L. López-Rodríguez
- Departamento de Química Orgánica I; Facultad de Ciencias Químicas; Universidad Complutense de Madrid; 28040 Madrid Spain
| | - Silvia Ortega-Gutiérrez
- Departamento de Química Orgánica I; Facultad de Ciencias Químicas; Universidad Complutense de Madrid; 28040 Madrid Spain
| |
Collapse
|
36
|
De Clercq DJH, Risseeuw MDP, Karalic I, De Smet AS, Defever D, Tavernier J, Lievens S, Van Calenbergh S. Alternative Reagents for Methotrexate as Immobilizing Anchor Moieties in the Optimization of MASPIT: Synthesis and Biological Evaluation. Chembiochem 2015; 16:834-43. [DOI: 10.1002/cbic.201402702] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2014] [Indexed: 11/10/2022]
|
37
|
Li C, Dong T, Li Q, Lei X. Probing the Anticancer Mechanism of (−)-Ainsliatrimer A through Diverted Total Synthesis and Bioorthogonal Ligation. Angew Chem Int Ed Engl 2014; 53:12111-5. [DOI: 10.1002/anie.201407225] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2014] [Indexed: 01/23/2023]
|
38
|
Li C, Dong T, Li Q, Lei X. Probing the Anticancer Mechanism of (−)-Ainsliatrimer A through Diverted Total Synthesis and Bioorthogonal Ligation. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201407225] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
|
39
|
Sudakow A, Papke U, Lindel T. Water compatible photoarylation of amino acids and peptides. Chemistry 2014; 20:10223-6. [PMID: 25042820 DOI: 10.1002/chem.201402959] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2014] [Indexed: 12/15/2022]
Abstract
A novel photoarylation of amino acids and peptides is described, which tolerates the presence of water. Irradiation of Boc-protected amino acids in the presence of N-protected 2-azidobenzimidazoles leads to selective arylation of carboxy termini or side chains. The new reaction also works for peptides. Irradiation of the nonapeptide H-SPSYVYHQF-OH also resulted in selective arylation of the tyrosine side chains, as indicated by ESI-MS/MS fragmentation. Chemo- and regioselectivity could add the title reaction to the repertoire of photoaffinity labeling methods.
Collapse
Affiliation(s)
- Alex Sudakow
- Institute of Organic Chemistry, TU Braunschweig, Hagenring 30, 38106 Braunschweig (Germany), Fax: (+49) 531-391-7744
| | | | | |
Collapse
|
40
|
Sauer S. Amorfrutins: A Promising Class of Natural Products that Are Beneficial to Health. Chembiochem 2014; 15:1231-8. [DOI: 10.1002/cbic.201402124] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2014] [Indexed: 01/16/2023]
|
41
|
Sakurai K, Ozawa S, Yamada R, Yasui T, Mizuno S. Comparison of the Reactivity of Carbohydrate Photoaffinity Probes with Different Photoreactive Groups. Chembiochem 2014; 15:1399-403. [DOI: 10.1002/cbic.201402051] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2014] [Indexed: 01/12/2023]
|
42
|
Plowright AT, Engkvist O, Gill A, Knerr L, Wang QD. Heart regeneration: opportunities and challenges for drug discovery with novel chemical and therapeutic methods or agents. Angew Chem Int Ed Engl 2014; 53:4056-75. [PMID: 24470316 DOI: 10.1002/anie.201307034] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2013] [Indexed: 12/11/2022]
Abstract
Following a heart attack, more than a billion cardiac muscle cells (cardiomyocytes) can be killed, leading to heart failure and sudden death. Much research in this area is now focused on the regeneration of heart tissue through differentiation of stem cells, proliferation of existing cardiomyocytes and cardiac progenitor cells, and reprogramming of fibroblasts into cardiomyocytes. Different chemical modalities (i.e. methods or agents), ranging from small molecules and RNA approaches (including both microRNA and anti-microRNA) to modified peptides and proteins, are showing potential to meet this medical need. In this Review, we outline the recent advances in these areas and describe both the modality and progress, including novel screening strategies to identify hits, and the upcoming challenges and opportunities to develop these hits into pharmaceuticals, at which chemistry plays a key role.
Collapse
Affiliation(s)
- Alleyn T Plowright
- Department of Medicinal Chemistry, Cardiovascular and Metabolic Diseases Innovative Medicines, AstraZeneca, Pepparedsleden 1, Mölndal, 43183 (Sweden).
| | | | | | | | | |
Collapse
|
43
|
Plowright AT, Engkvist O, Gill A, Knerr L, Wang QD. Herzregeneration: Chancen und Aufgaben für die Wirkstoff-Forschung mit neuartigen chemischen und therapeutischen Methoden oder Agentien. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201307034] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
|
44
|
Futamura Y, Kawatani M, Muroi M, Aono H, Nogawa T, Osada H. Identification of a Molecular Target of a Novel Fungal Metabolite, Pyrrolizilactone, by Phenotypic Profiling Systems. Chembiochem 2013; 14:2456-63. [DOI: 10.1002/cbic.201300499] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Indexed: 11/11/2022]
|