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Hou W, Zhang Y, Huang F, Chen W, Gu Y, Wang Y, Pang J, Dong H, Pan K, Zhang S, Ma P, Xu H. Bioinspired Selenium-Nitrogen Exchange (SeNEx) Click Chemistry Suitable for Nanomole-Scale Medicinal Chemistry and Bioconjugation. Angew Chem Int Ed Engl 2024; 63:e202318534. [PMID: 38343199 DOI: 10.1002/anie.202318534] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2023] [Accepted: 02/08/2024] [Indexed: 02/24/2024]
Abstract
Click chemistry is a powerful molecular assembly strategy for rapid functional discovery. The development of click reactions with new connecting linkage is of great importance for expanding the click chemistry toolbox. We report the first selenium-nitrogen exchange (SeNEx) click reaction between benzoselenazolones and terminal alkynes (Se-N to Se-C), which is inspired by the biochemical SeNEx between Ebselen and cysteine (Cys) residue (Se-N to Se-S). The formed selenoalkyne connection is readily elaborated, thus endowing this chemistry with multidimensional molecular diversity. Besides, this reaction is modular, predictable, and high-yielding, features fast kinetics (k2≥14.43 M-1 s-1), excellent functional group compatibility, and works well at miniaturization (nanomole-scale), opening up many interesting opportunities for organo-Se synthesis and bioconjugation, as exemplified by sequential click chemistry (coupled with ruthenium-catalyzed azide-alkyne cycloaddition (RuAAC) and sulfur-fluoride exchange (SuFEx)), selenomacrocycle synthesis, nanomole-scale synthesis of Se-containing natural product library and DNA-encoded library (DEL), late-stage peptide modification and ligation, and multiple functionalization of proteins. These results indicated that SeNEx is a useful strategy for new click chemistry developments, and the established SeNEx chemistry will serve as a transformative platform in multidisciplinary fields such as synthetic chemistry, material science, chemical biology, medical chemistry, and drug discovery.
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Affiliation(s)
- Wei Hou
- College of Pharmaceutical Science and Institute of Drug Development & Chemical Biology, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Yiyuan Zhang
- Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, 201210, Shanghai, China
| | - Fuchao Huang
- College of Pharmaceutical Science and Institute of Drug Development & Chemical Biology, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Wanting Chen
- Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, 201210, Shanghai, China
| | - Yuang Gu
- Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, 201210, Shanghai, China
| | - Yan Wang
- Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, 201210, Shanghai, China
| | - Jiacheng Pang
- College of Pharmaceutical Science and Institute of Drug Development & Chemical Biology, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Hewei Dong
- College of Pharmaceutical Science and Institute of Drug Development & Chemical Biology, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Kangyin Pan
- Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, 201210, Shanghai, China
| | - Shuning Zhang
- Shanghai Key Laboratory of Orthopedic Implants, Department of Orthopedic Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University, School of Medicine, 201210, Shanghai, China
| | - Peixiang Ma
- Shanghai Key Laboratory of Orthopedic Implants, Department of Orthopedic Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University, School of Medicine, 201210, Shanghai, China
| | - Hongtao Xu
- Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, 201210, Shanghai, China
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2
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Xu H, Wang Y, Dong H, Zhang Y, Gu Y, Zhang S, Meng Y, Li J, Shi XJ, Ji Q, Liu L, Ma P, Ma F, Yang G, Hou W. Selenylation Chemistry Suitable for On‐Plate Parallel and On‐DNA Library Synthesis Enabling High‐Throughput Medicinal Chemistry. Angew Chem Int Ed Engl 2022; 61:e202206516. [DOI: 10.1002/anie.202206516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Indexed: 11/08/2022]
Affiliation(s)
- Hongtao Xu
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Yan Wang
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Hewei Dong
- College of Pharmaceutical Science and Institute of Drug Development & Chemical Biology Zhejiang University of Technology Hangzhou 310014 China
| | - Yiyuan Zhang
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Yuang Gu
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Shuning Zhang
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Yu Meng
- College of Pharmaceutical Science and Institute of Drug Development & Chemical Biology Zhejiang University of Technology Hangzhou 310014 China
| | - Jie Li
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Xiao Jie Shi
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Qun Ji
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Lili Liu
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Peixiang Ma
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
- Shanghai Key Laboratory of Orthopedic Implants Department of Orthopedic Surgery Shanghai Ninth People's Hospital Shanghai Jiao Tong University School of Medicine 201210 Shanghai China
- Zhejiang Laboratory Hangzhou 311121 China
| | - Fei Ma
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Guang Yang
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Wei Hou
- College of Pharmaceutical Science and Institute of Drug Development & Chemical Biology Zhejiang University of Technology Hangzhou 310014 China
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3
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Xu H, Wang Y, Dong H, Zhang Y, Gu Y, Zhang S, Meng Y, Li J, Shi XJ, Ji Q, Liu L, Ma P, Ma F, Yang G, Hou W. Selenylation Chemistry Suitable for On‐Plate Parallel and On‐DNA Library Synthesis Enabling High‐Throughput Medicinal Chemistry. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202206516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Hongtao Xu
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Yan Wang
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Hewei Dong
- College of Pharmaceutical Science and Institute of Drug Development & Chemical Biology Zhejiang University of Technology Hangzhou 310014 China
| | - Yiyuan Zhang
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Yuang Gu
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Shuning Zhang
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Yu Meng
- College of Pharmaceutical Science and Institute of Drug Development & Chemical Biology Zhejiang University of Technology Hangzhou 310014 China
| | - Jie Li
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Xiao Jie Shi
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Qun Ji
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Lili Liu
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Peixiang Ma
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
- Shanghai Key Laboratory of Orthopedic Implants Department of Orthopedic Surgery Shanghai Ninth People's Hospital Shanghai Jiao Tong University School of Medicine 201210 Shanghai China
- Zhejiang Laboratory Hangzhou 311121 China
| | - Fei Ma
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Guang Yang
- Shanghai Institute for Advanced Immunochemical Studies ShanghaiTech University Shanghai 201210 China
| | - Wei Hou
- College of Pharmaceutical Science and Institute of Drug Development & Chemical Biology Zhejiang University of Technology Hangzhou 310014 China
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4
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Melsen PRA, Yoshisada R, Jongkees SAK. Opportunities for expanding encoded chemical diversification and improving hit enrichment in mRNA-displayed peptide libraries. Chembiochem 2022; 23:e202100685. [PMID: 35100479 PMCID: PMC9306583 DOI: 10.1002/cbic.202100685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 01/27/2022] [Indexed: 11/07/2022]
Abstract
DNA‐encoded small‐molecule libraries and mRNA displayed peptide libraries both use numerically large pools of oligonucleotide‐tagged molecules to identify potential hits for protein targets. They differ dramatically, however, in the ‘drug‐likeness’ of the molecules that each can be used to discover. We give here an overview of the two techniques, comparing some advantages and disadvantages of each, and suggest areas where particularly mRNA display can benefit from adopting advances developed with DNA‐encoded small molecule libraries. We outline cases where chemical modification of the peptide library has already been used in mRNA display, and survey opportunities to expand this using examples from DNA‐encoded small molecule libraries. We also propose potential opportunities for encoding such reactions within the mRNA/cDNA tag of an mRNA‐displayed peptide library to allow a more diversity‐oriented approach to library modification. Finally, we outline alternate approaches for enriching target‐binding hits from a pooled and tagged library, and close by detailing several examples of how an adjusted mRNA‐display based approach could be used to discover new ‘drug‐like’ modified small peptides.
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Affiliation(s)
- Paddy R A Melsen
- Vrije Universiteit Amsterdam, Department of Chemistry and Pharmaceutical Sciences, NETHERLANDS
| | - Ryoji Yoshisada
- Vrije Universiteit Amsterdam, Department of Chemistry and Pharmaceutical Sciences, NETHERLANDS
| | - Seino A K Jongkees
- Vrije Universiteit Amsterdam, Chemistry and Pharmaceutical Sciences, de Boelelaan 1108, 1081 HZ, Amsterdam, NETHERLANDS
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5
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Wu M, Wang S, Wang Y, Gao H, Yi W, Zhou Z. TFA‐Prompted/Rh(III)‐Catalysed Chemoselective C
3
− or C
2
−H Functionalization of Indoles with Methylenecyclopropanes. European J Org Chem 2021. [DOI: 10.1002/ejoc.202101132] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Min Wu
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease School of Pharmaceutical Sciences & the Fifth Affiliated Hospital Guangzhou Medical University Guangzhou Guangdong 511436 P. R. China
| | - Shengdong Wang
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease School of Pharmaceutical Sciences & the Fifth Affiliated Hospital Guangzhou Medical University Guangzhou Guangdong 511436 P. R. China
| | - Yi Wang
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease School of Pharmaceutical Sciences & the Fifth Affiliated Hospital Guangzhou Medical University Guangzhou Guangdong 511436 P. R. China
| | - Hui Gao
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease School of Pharmaceutical Sciences & the Fifth Affiliated Hospital Guangzhou Medical University Guangzhou Guangdong 511436 P. R. China
| | - Wei Yi
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease School of Pharmaceutical Sciences & the Fifth Affiliated Hospital Guangzhou Medical University Guangzhou Guangdong 511436 P. R. China
| | - Zhi Zhou
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease School of Pharmaceutical Sciences & the Fifth Affiliated Hospital Guangzhou Medical University Guangzhou Guangdong 511436 P. R. China
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6
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Liu S, Mao H, Qiao J, Zhang X, Lu Y, Gong X, Jia A, Gu L, Wu X, Zhao F. Temperature‐Controlled Divergent Synthesis of Tetrasubstituted Alkenes and Pyrrolo[1,2‐
a
]indole Derivatives via Iridium Catalysis. ASIAN J ORG CHEM 2021. [DOI: 10.1002/ajoc.202100476] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Siyu Liu
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province Sichuan Industrial Institute of Antibiotics School of Pharmacy Chengdu University No. 2025, Chengluo Avenue Chengdu 610106 P. R. China
- Jinhua Branch Sichuan Industrial Institute of Antibiotics School of Pharmacy Chengdu University 888 West Hai Tang Road Jinhua 321007 P. R. China
| | - Hui Mao
- College of Pharmacy Jinhua Polytechnic 888 West Hai Tang Road Jinhua 321007 P. R. China
| | - Jin Qiao
- Jinhua Branch Sichuan Industrial Institute of Antibiotics School of Pharmacy Chengdu University 888 West Hai Tang Road Jinhua 321007 P. R. China
| | - Xiaoning Zhang
- Jinhua Branch Sichuan Industrial Institute of Antibiotics School of Pharmacy Chengdu University 888 West Hai Tang Road Jinhua 321007 P. R. China
| | - Yangbin Lu
- Jinhua Branch Sichuan Industrial Institute of Antibiotics School of Pharmacy Chengdu University 888 West Hai Tang Road Jinhua 321007 P. R. China
| | - Xin Gong
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province Sichuan Industrial Institute of Antibiotics School of Pharmacy Chengdu University No. 2025, Chengluo Avenue Chengdu 610106 P. R. China
| | - Aiqiong Jia
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province Sichuan Industrial Institute of Antibiotics School of Pharmacy Chengdu University No. 2025, Chengluo Avenue Chengdu 610106 P. R. China
| | - Linghui Gu
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province Sichuan Industrial Institute of Antibiotics School of Pharmacy Chengdu University No. 2025, Chengluo Avenue Chengdu 610106 P. R. China
| | - Xiaowei Wu
- Shanghai Institute of Materia Medica Chinese Academy of Sciences 555 Zuchongzhi Road Shanghai 201203 P. R. China
- Zhongshan Institute for Drug Discovery Shanghai Institute of Materia Medica Chinese Academy of Sciences Zhongshan 528400 P. R. China
| | - Fei Zhao
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province Sichuan Industrial Institute of Antibiotics School of Pharmacy Chengdu University No. 2025, Chengluo Avenue Chengdu 610106 P. R. China
- Jinhua Branch Sichuan Industrial Institute of Antibiotics School of Pharmacy Chengdu University 888 West Hai Tang Road Jinhua 321007 P. R. China
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7
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Yata T, Nishimoto Y, Chiba K, Yasuda M. Indium-Catalyzed C-F Bond Transformation through Oxymetalation/β-Fluorine Elimination to Access Fluorinated Isocoumarins. Chemistry 2021; 27:8288-8294. [PMID: 33855750 DOI: 10.1002/chem.202100672] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Indexed: 11/08/2022]
Abstract
Fluorinated heterocycles have attracted much attention in the pharmaceutical and agrochemical industries. Many strategies have already been developed to achieve the synthesis of fluorinated heterocycles. Formidable challenges remain, however, in the synthesis of fluorinated isocoumarin derivatives that are among the most alluring structural motifs. Herein, the indium-catalyzed C-F bond transformation of 2-(2,2-difluorovinyl) benzoates is reported, which are readily accessible compounds, to give a diverse array of fluorinated isocoumarins. The present reaction proceeds smoothly using inexpensive reagents: a catalytic amount of indium salt in the presence of zinc salt. A theoretical calculation of potential energy profiles showed that the reaction consists of oxymetalation with the elimination of alkyl halide and the β-fluorine elimination.
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Affiliation(s)
- Tetsuji Yata
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Yoshihiro Nishimoto
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan.,Innovative Catalysis Science Division Institute for Open and Transdisciplinary Research Initiatives (ICS-OTRI), Osaka University Suita, Osaka, 565-0871, Japan
| | - Kouji Chiba
- Material Science Division, MOLSIS Inc., 1-28-38 Shinkawa, Chuo-ku, Tokyo, 104-0033, Japan
| | - Makoto Yasuda
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan.,Innovative Catalysis Science Division Institute for Open and Transdisciplinary Research Initiatives (ICS-OTRI), Osaka University Suita, Osaka, 565-0871, Japan
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