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Pinetre C, van Dongen SW, Brandel C, Léonard AS, Charpentier MD, Dupray V, Oosterling K, Kaptein B, Leeman M, Kellogg RM, ter Horst JH, Noorduin WL. Enantiopurity by Directed Evolution of Crystal Stabilities and Nonequilibrium Crystallization. J Am Chem Soc 2025; 147:8864-8870. [PMID: 39995179 PMCID: PMC11912332 DOI: 10.1021/jacs.5c00569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2025] [Revised: 02/13/2025] [Accepted: 02/14/2025] [Indexed: 02/26/2025]
Abstract
Crystallization is a powerful method to isolate enantiopure molecules from racemates if enantiomers self-sort into separate enantiopure crystals. Unfortunately, this behavior is unpredictable and rare (5-10%), as both enantiomers predominantly crystallize together to form racemic crystals, hindering any such chiral sorting. These unfavorable statistics might be overcome using nonequilibrium conditions. Therefore, we systematically characterize energy differences (ΔGΦ) between racemic and enantiopure crystal phases for libraries of target molecules (phenylglycine, praziquantel) with different chemical modifications. Surprisingly, these libraries reveal wide but similar continuous distributions of ΔGΦ, wherein similar chemical modifications group together. This grouping allows a directed evolution strategy to discover racemic crystals with low ΔGΦ for isolating desired enantiomers by crystallization under nonequilibrium conditions. Comparison with over a hundred previously reported compounds suggests that as many as half of all chiral molecules may kinetically form enantiopure crystals (∼50%). These insights open new previously unconsidered possibilities for isolating enantiopure molecules.
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Affiliation(s)
- Clément Pinetre
- Univ Rouen
Normandie, Normandie Univ, SMS, UR 3233, Rouen F-76000, France
| | | | - Clément Brandel
- Univ Rouen
Normandie, Normandie Univ, SMS, UR 3233, Rouen F-76000, France
| | | | - Maxime D. Charpentier
- EPSRC
Future
Continuous Manufacturing and Advanced Crystallisation Research Hub,
c/o Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow G1 1RD, U.K.
| | - Valérie Dupray
- Univ Rouen
Normandie, Normandie Univ, SMS, UR 3233, Rouen F-76000, France
| | | | | | - Michel Leeman
- Symeres, Kadijk 3, Groningen 9747
AT, The Netherlands
| | - Richard M. Kellogg
- Kellogg
Beheer B.V., Zernikepark
12, Unit 1.31, Groningen 9747 AN, The Netherlands
| | - Joop H. ter Horst
- EPSRC
Future
Continuous Manufacturing and Advanced Crystallisation Research Hub,
c/o Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow G1 1RD, U.K.
- Tiofarma, Hermanus Boerhaavestraat 1, Oud-Beijerland 3261 ME, The Netherlands
| | - Willem L. Noorduin
- AMOLF, Science Park 104, Amsterdam 1098 XG, The Netherlands
- Van‘t
Hoff Institute for Molecular Sciences, University
of Amsterdam, Science
Park 904, Amsterdam 1090
GD, The Netherlands
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Williams JD, Pöchlauer P, Okumura Y, Inami Y, Kappe CO. Photochemical Deracemization of a Medicinally-Relevant Benzopyran using an Oscillatory Flow Reactor. Chemistry 2022; 28:e202200741. [PMID: 35293645 PMCID: PMC9321886 DOI: 10.1002/chem.202200741] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Indexed: 12/12/2022]
Abstract
Dynamic deracemization processes, such as crystallization-induced diastereomer transformations (CIDTs), offer the opportunity to combine racemization and resolution processes, to provide high yields of enantiomerically pure compounds. To date, few of these processes have incorporated photochemical racemization. By combining batch crystallization with a flow photoreactor for efficient irradiation, it is possible to perform such deracemization in an effective, scalable and high yielding manner. After applying design of experiment (DoE) principles and mathematical modelling, the most efficient parameter set could be identified, leading to excellent results in just 4 h reaction time: isolated yield of 82 % and assay ee of 96 %. Such photochemical racemization methods can serve to open new avenues for preparation of enantiomerically pure functional molecules on both small and industrially-relevant scales.
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Affiliation(s)
- Jason D Williams
- Center for Continuous Flow Synthesis and Processing (CCFLOW), Research Center Pharmaceutical Engineering GmbH (RCPE), Inffeldgasse 13, 8010, Graz, Austria.,Institute of Chemistry, University of Graz, NAWI Graz, Heinrichstrasse 28, 8010, Graz, Austria
| | - Peter Pöchlauer
- Thermo Fisher Scientific Linz, St.-Peter-Straße 25, 4020, Linz, Austria
| | - Yoshiyuki Okumura
- R&D and Business Promotion, AskAt Inc. 2F Dai-Tokai Building, 3-22-8 Meieki Nakamura-ku Nagoya, Aichi, 450-0002, Japan
| | - Yukari Inami
- R&D and Business Promotion, AskAt Inc. 2F Dai-Tokai Building, 3-22-8 Meieki Nakamura-ku Nagoya, Aichi, 450-0002, Japan
| | - C Oliver Kappe
- Center for Continuous Flow Synthesis and Processing (CCFLOW), Research Center Pharmaceutical Engineering GmbH (RCPE), Inffeldgasse 13, 8010, Graz, Austria.,Institute of Chemistry, University of Graz, NAWI Graz, Heinrichstrasse 28, 8010, Graz, Austria
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