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Gribble GW. Naturally Occurring Organohalogen Compounds-A Comprehensive Review. PROGRESS IN THE CHEMISTRY OF ORGANIC NATURAL PRODUCTS 2023; 121:1-546. [PMID: 37488466 DOI: 10.1007/978-3-031-26629-4_1] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/26/2023]
Abstract
The present volume is the third in a trilogy that documents naturally occurring organohalogen compounds, bringing the total number-from fewer than 25 in 1968-to approximately 8000 compounds to date. Nearly all of these natural products contain chlorine or bromine, with a few containing iodine and, fewer still, fluorine. Produced by ubiquitous marine (algae, sponges, corals, bryozoa, nudibranchs, fungi, bacteria) and terrestrial organisms (plants, fungi, bacteria, insects, higher animals) and universal abiotic processes (volcanos, forest fires, geothermal events), organohalogens pervade the global ecosystem. Newly identified extraterrestrial sources are also documented. In addition to chemical structures, biological activity, biohalogenation, biodegradation, natural function, and future outlook are presented.
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Affiliation(s)
- Gordon W Gribble
- Department of Chemistry, Dartmouth College, Hanover, NH, 03755, USA.
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Zhang W, Li L, Li CC. Synthesis of natural products containing highly strained trans-fused bicyclo[3.3.0]octane: historical overview and future prospects. Chem Soc Rev 2021; 50:9430-9442. [PMID: 34286715 DOI: 10.1039/d0cs01471k] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Owing to high strain energy, molecules with trans-fused bicyclo[3.3.0]octane ring systems are very difficult to synthesize, and there are very few approaches to access them. Recently, a number of natural products with such ring systems have been made by the synthetic community. However, there has been no review in this field before. This review provides a systematic and comprehensive discussion on the synthesis of natural products containing trans-fused bicyclo[3.3.0]octanes and the historical context of this work. The prospects for future research in this field are also discussed. Covering the literature before 2021, this review aims to offer a helpful reference for total synthesis of highly strained natural products containing trans-fused bicyclo[3.3.0]octane ring systems.
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Affiliation(s)
- Wen Zhang
- Shenzhen Grubbs Institute and Department of Chemistry, Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology (SUSTech), Shenzhen 518055, China.
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A convergent total synthesis of the kedarcidin chromophore: 20-years in the making. J Antibiot (Tokyo) 2019; 72:350-363. [PMID: 30911163 DOI: 10.1038/s41429-019-0175-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2018] [Revised: 02/20/2019] [Accepted: 03/07/2019] [Indexed: 11/09/2022]
Abstract
The kedarcidin chromophore is a formidible target for total synthesis. Herein, we describe a viable synthesis of this highly unstable natural product. This entailed the early introduction and gram-scale synthesis of 2-deoxysugar conjugates of both L-mycarose and L-kedarosamine. Key advances include: (1) stereoselective allenylzinc keto-addition to form an epoxyalkyne; (2) α-selective glycosylations with 2-deoxy thioglycosides (AgPF6/DTBMP) and Schmidt donors (TiCl4); (3) Mitsunobu aryl etherification to install a hindered 1,2-cis-configuration; (4) atropselective and convergent Sonogashira-Shiina cyclization sequence; (5) Ohfune-based amidation protocol for naphthoic acid; (6) Ce(III)-mediated nine-membered enediyne cyclization and ester/mesylate derivatisation; (7) SmI2-based reductive olefination and global HF-deprotection end-game. The longest linear sequence from gram-scale intermediates is 17-steps, and HRMS data of the synthetic natural product was obtained for the first time.
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Kurzawa T, Harms K, Koert U. Stereoselective Synthesis of the Benzodihydropentalene Core of the Fijiolides. Org Lett 2018; 20:1388-1391. [PMID: 29450998 DOI: 10.1021/acs.orglett.8b00163] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
An efficient stereoselective synthesis of the enantiomer of the benzodihydropentalene core of fijiolides A and B has been achieved. The asymmetric conjugate addition of styrylboronic acid to an indenone produced the first stereocenter. Ring C was installed by ring-closing metathesis of a cis disubstituted indanone. Regioselective epoxide opening by NaSePh and subsequent oxidative elimination produced an allylic alcohol. The final introduction of the cyclopentadiene was possible by elimination of an in situ formed triflate.
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Affiliation(s)
- Timon Kurzawa
- Fachbereich Chemie, Philipps-University Marburg , Hans-Meerwein-Strasse 4, D-35043 Marburg, Germany
| | - Klaus Harms
- Fachbereich Chemie, Philipps-University Marburg , Hans-Meerwein-Strasse 4, D-35043 Marburg, Germany
| | - Ulrich Koert
- Fachbereich Chemie, Philipps-University Marburg , Hans-Meerwein-Strasse 4, D-35043 Marburg, Germany
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HIRAMA M. Total synthesis and related studies of large, strained, and bioactive natural products. PROCEEDINGS OF THE JAPAN ACADEMY. SERIES B, PHYSICAL AND BIOLOGICAL SCIENCES 2016; 92:290-329. [PMID: 27725470 PMCID: PMC5243947 DOI: 10.2183/pjab.92.290] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2016] [Accepted: 08/10/2016] [Indexed: 06/06/2023]
Abstract
Our chemical syntheses and related scientific investigations of natural products with complex architectures and powerful biological activities are described, focusing on the very large 3 nm-long polycyclic ethers called the ciguatoxins, highly strained and labile chromoprotein antitumor antibiotics featuring nine-membered enediyne cores, and extremely potent anthelmintic macrolides called the avermectins.
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Affiliation(s)
- Masahiro HIRAMA
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai, Miyagi, Japan
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Heinz C, Cramer N. Synthesis of Fijiolide A via an Atropselective Paracyclophane Formation. J Am Chem Soc 2015; 137:11278-81. [DOI: 10.1021/jacs.5b07964] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Christoph Heinz
- Laboratory of Asymmetric
Catalysis and Synthesis, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne CH-1015, Switzerland
| | - Nicolai Cramer
- Laboratory of Asymmetric
Catalysis and Synthesis, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne CH-1015, Switzerland
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Yamada K, Lear MJ, Yamaguchi T, Yamashita S, Gridnev ID, Hayashi Y, Hirama M. Biomimetic Total Synthesis of Cyanosporaside Aglycons from a Single Enediyne Precursor through Site-Selectivep-Benzyne Hydrochlorination. Angew Chem Int Ed Engl 2014; 53:13902-6. [DOI: 10.1002/anie.201408416] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2014] [Indexed: 11/07/2022]
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8
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Yamada K, Lear MJ, Yamaguchi T, Yamashita S, Gridnev ID, Hayashi Y, Hirama M. Biomimetic Total Synthesis of Cyanosporaside Aglycons from a Single Enediyne Precursor through Site-Selectivep-Benzyne Hydrochlorination. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201408416] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Kraka E, Cremer D. Enediynes, enyne-allenes, their reactions, and beyond. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2013. [DOI: 10.1002/wcms.1174] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Elfi Kraka
- Computational and Theoretical Chemistry Group, Department of Chemistry; Southern Methodist University; Dallas TX USA
| | - Dieter Cremer
- Computational and Theoretical Chemistry Group, Department of Chemistry; Southern Methodist University; Dallas TX USA
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Wang S, Li P, Yu L, Wang L. Sequential and One-Pot Reactions of Phenols with Bromoalkynes for the Synthesis of (Z)-2-Bromovinyl Phenyl Ethers and Benzo[b]furans. Org Lett 2011; 13:5968-71. [DOI: 10.1021/ol202383z] [Citation(s) in RCA: 109] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Shihua Wang
- Department of Chemistry, Huaibei Normal University, Huaibei, Anhui 235000, P. R. China
| | - Pinhua Li
- Department of Chemistry, Huaibei Normal University, Huaibei, Anhui 235000, P. R. China
| | - Lin Yu
- Department of Chemistry, Huaibei Normal University, Huaibei, Anhui 235000, P. R. China
| | - Lei Wang
- Department of Chemistry, Huaibei Normal University, Huaibei, Anhui 235000, P. R. China
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Masayuki Inoue. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/anie.201103732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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13
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Hu Y, Zhao T, Zhang S. Applications of Allylsamarium Bromide as a Grignard Reagent and a Single-Electron Transfer Reagent in the One-Pot Synthesis of Dienes and Trienes. Chemistry 2010; 16:1697-705. [DOI: 10.1002/chem.200901927] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Sato I, Hirama M. Recent Advances in the Synthetic Studies of Nine-membered Enediyne Antitumor Antibiotics. J SYN ORG CHEM JPN 2010. [DOI: 10.5059/yukigoseikyokaishi.68.1123] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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15
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Chen Z, Jiang H, Li Y, Qi C. Highly efficient two-step synthesis of (Z)-2-halo-1-iodoalkenes from terminal alkynes. Chem Commun (Camb) 2010; 46:8049-51. [DOI: 10.1039/c0cc02156c] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Tanaka Y, Fuse S, Tanaka H, Doi T, Takahashi T. An Efficient Synthesis of a Cyclic Ether Key Intermediate for 9-Membered Masked Enediyne Using an Automated Synthesizer. Org Process Res Dev 2009. [DOI: 10.1021/op9002455] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yoshikazu Tanaka
- Department of Applied Chemistry, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro, Tokyo 152-8552, Japan, and Graduate School of Pharmaceutical Sciences, Tohoku University, Aza-Aoba, Aramaki, Aoba, Sendai 980-8578, Japan
| | - Shinichiro Fuse
- Department of Applied Chemistry, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro, Tokyo 152-8552, Japan, and Graduate School of Pharmaceutical Sciences, Tohoku University, Aza-Aoba, Aramaki, Aoba, Sendai 980-8578, Japan
| | - Hiroshi Tanaka
- Department of Applied Chemistry, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro, Tokyo 152-8552, Japan, and Graduate School of Pharmaceutical Sciences, Tohoku University, Aza-Aoba, Aramaki, Aoba, Sendai 980-8578, Japan
| | - Takayuki Doi
- Department of Applied Chemistry, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro, Tokyo 152-8552, Japan, and Graduate School of Pharmaceutical Sciences, Tohoku University, Aza-Aoba, Aramaki, Aoba, Sendai 980-8578, Japan
| | - Takashi Takahashi
- Department of Applied Chemistry, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro, Tokyo 152-8552, Japan, and Graduate School of Pharmaceutical Sciences, Tohoku University, Aza-Aoba, Aramaki, Aoba, Sendai 980-8578, Japan
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Pandithavidana DR, Poloukhtine A, Popik VV. Photochemical generation and reversible cycloaromatization of a nine-membered ring cyclic enediyne. J Am Chem Soc 2009; 131:351-6. [PMID: 19053819 DOI: 10.1021/ja8077076] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Irradiation of the nine-membered ring enediyne precursor, which has one of its triple bonds masked as cyclopropenone, efficiently (Phi = 0.34) generates the reactive 4,5-benzocyclonona-2,6-diynol. The latter rapidly equilibrates with the corresponding 1,4-didehydronaphthalene diradical and then undergoes rate-limiting hydrogen abstraction to produce the ultimate product of the Bergman cyclization, benz[f]indanol.
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Ogawa K, Koyama Y, Ohashi I, Sato I, Hirama M. Total Synthesis of a Protected Aglycon of the Kedarcidin Chromophore. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200805518] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Ogawa K, Koyama Y, Ohashi I, Sato I, Hirama M. Total Synthesis of a Protected Aglycon of the Kedarcidin Chromophore. Angew Chem Int Ed Engl 2009; 48:1110-3. [DOI: 10.1002/anie.200805518] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Ogawa K, Koyama Y, Ohashi I, Sato I, Hirama M. Secure route to the epoxybicyclo[7.3.0]dodecadienediyne core of the kedarcidin chromophore. Chem Commun (Camb) 2008:6327-9. [DOI: 10.1039/b814595d] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Norizuki Y, Komano K, Sato I, Hirama M. Internal amide-triggered cycloaromatization of maduropeptin-like nine-membered enediyne. Chem Commun (Camb) 2008:5372-4. [DOI: 10.1039/b811355f] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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