1
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Kumar S, Kanchupalli V. Synthesis of γ-Spirolactams via Rh(III)-Catalyzed C-H Activation/Directing Group Migration/Dearomatization/Spiroannulation of Indoles with 1,3-Enynes. Org Lett 2024; 26:8975-8981. [PMID: 39207739 DOI: 10.1021/acs.orglett.4c02404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]
Abstract
1,3-Enynes are valuable coupling partners in transition-metal-catalyzed C-H functionalizations. Certainly, aliphatic-substituted 1,3-enynes have been thoroughly investigated in C-H functionalizations, whereas aromatic-substituted 1,3-enynes remain underexplored. Herein, we report the realization of this goal, where we achieve an atom-economical protocol for the synthesis of γ-spirolactams via Rh(III)-catalyzed C-H functionalization of N-carbamoylindoles with 1,3-enynes. The reaction proceeds through a unique cascade strategy, such as C-H activation/directing group (DG) migration/indole dearomatization/spiroannulation, to access novel and synthetically challenging spiro[indoline-2,2'-pyrrolidin]-5'-one scaffolds. Moreover, the isolation of intermediate and mechanistic and ESI-HRMS studies further provide valuable insights into the proposed catalytic cycle.
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Affiliation(s)
- Sanjeev Kumar
- Department of Chemical Sciences, National Institute of Pharmaceutical Education and Research (NIPER), Hyderabad, Telangana 500037, India
| | - Vinaykumar Kanchupalli
- Department of Chemical Sciences, National Institute of Pharmaceutical Education and Research (NIPER), Hyderabad, Telangana 500037, India
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2
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Ding Z, Fu Z, Mi R, Li X. Rhodium(III)-Catalyzed Oxidative Cross-Coupling of N-Pyrimidylindoles with Cyclic β-Keto Esters for Accessing All-Carbon Quaternary Centers. Org Lett 2024; 26:5295-5299. [PMID: 38874590 DOI: 10.1021/acs.orglett.4c01631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2024]
Abstract
Rh(III)-catalyzed direct oxidative C-H/C-H cross-coupling between N-pyrimidylindoles and β-ketoesters is presented. Easily available β-ketoesters are used as an alkylating agent for the facile construction of all-carbon quaternary centers under mild conditions. The ester group in the product can undergo decarboxylation or decarboxylative amination.
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Affiliation(s)
- Zhiying Ding
- Institute of Frontier Chemistry, School of Chemistry and Chemical Engineering, Shandong University, Qingdao, 266237, P. R. China
| | - Zhenda Fu
- Institute of Frontier Chemistry, School of Chemistry and Chemical Engineering, Shandong University, Qingdao, 266237, P. R. China
| | - Ruijie Mi
- Institute of Frontier Chemistry, School of Chemistry and Chemical Engineering, Shandong University, Qingdao, 266237, P. R. China
| | - Xingwei Li
- Institute of Frontier Chemistry, School of Chemistry and Chemical Engineering, Shandong University, Qingdao, 266237, P. R. China
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3
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Zhan LW, Lu CJ, Feng J, Liu RR. Atroposelective Synthesis of C-N Vinylindole Atropisomers by Palladium-Catalyzed Asymmetric Hydroarylation of 1-Alkynylindoles. Angew Chem Int Ed Engl 2023; 62:e202312930. [PMID: 37747364 DOI: 10.1002/anie.202312930] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 09/20/2023] [Accepted: 09/25/2023] [Indexed: 09/26/2023]
Abstract
Transition-metal-catalyzed hydroarylation of unsymmetrical internal alkynes remains challenging because of the difficulty in controlling regioselectivity and stereoselectivity. Moreover, the enantioselective hydroarylation of alkynes using organoboron reagents has not been reported. Herein, we report for the first time that palladium compounds can catalyze the hydroarylation of 1-alkynylindoles with organoborons for the synthesis of chiral C-N atropisomers. A series of rarely reported vinylindole atropisomers was synthesized with excellent regio-, stereo- (Z-selectivity), and enantioselectivity under mild reaction conditions. The ready availability of organoborons and alkynes and the simplicity, high stereoselectivity, and good functional group tolerance of this catalytic system make it highly attractive.
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Affiliation(s)
- Li-Wen Zhan
- College of Chemistry and Chemical Engineering, Qingdao University, Ningxia Road 308#, Qingdao, 266071, China
| | - Chuan-Jun Lu
- College of Chemistry and Chemical Engineering, Qingdao University, Ningxia Road 308#, Qingdao, 266071, China
| | - Jia Feng
- College of Chemistry and Chemical Engineering, Qingdao University, Ningxia Road 308#, Qingdao, 266071, China
| | - Ren-Rong Liu
- College of Chemistry and Chemical Engineering, Qingdao University, Ningxia Road 308#, Qingdao, 266071, China
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4
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Xing Y, Rottensteiner A, Ciccone J, Howorka S. Functional Nanopores Enabled with DNA. Angew Chem Int Ed Engl 2023; 62:e202303103. [PMID: 37186432 DOI: 10.1002/anie.202303103] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 04/20/2023] [Accepted: 04/21/2023] [Indexed: 05/17/2023]
Abstract
Membrane-spanning nanopores are used in label-free single-molecule sensing and next-generation portable nucleic acid sequencing, and as powerful research tools in biology, biophysics, and synthetic biology. Naturally occurring protein and peptide pores, as well as synthetic inorganic nanopores, are used in these applications, with their limitations. The structural and functional repertoire of nanopores can be considerably expanded by functionalising existing pores with DNA strands and by creating an entirely new class of nanopores with DNA nanotechnology. This review outlines progress in this area of functional DNA nanopores and outlines developments to open up new applications.
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Affiliation(s)
- Yongzheng Xing
- Department of Chemistry, Institute for Structural and Molecular Biology, University College London, London, WC1H 0AJ, UK
| | - Alexia Rottensteiner
- Department of Chemistry, Institute for Structural and Molecular Biology, University College London, London, WC1H 0AJ, UK
| | - Jonah Ciccone
- Department of Chemistry, Institute for Structural and Molecular Biology, University College London, London, WC1H 0AJ, UK
| | - Stefan Howorka
- Department of Chemistry, Institute for Structural and Molecular Biology, University College London, London, WC1H 0AJ, UK
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5
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Kumar MN, Suresh V, Nagireddy A, Nanubolu JB, Reddy MS. Pd-catalyzed regioselective rollover dual C-H annulation cascade: facile approach to phenanthrene derivatives. Chem Commun (Camb) 2023. [PMID: 37475606 DOI: 10.1039/d3cc02523c] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/22/2023]
Abstract
Annulations of unsaturated systems through C-H activation represent a powerful tool for producing multicyclic scaffolds. Having coordinating centers in both annulation partners (a dual coordination strategy) would afford remarkable selectivities in the outcomes. Along this concept, we report herein a Pd-catalyzed regioselective rollover cascade dual C-H annulation of o-arylphenols with alkynols for constructing phenanthrene scaffolds. Control, KIE and deuteration studies were conducted to determine the reaction mechanism, and downstream transformations and scaled-up reactions were carried out to assess the robustness of the transformation.
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Affiliation(s)
- Muniganti Naveen Kumar
- Department of OSPC, CSIR-Indian Institute of Chemical Technology, Habsiguda, Hyderabad 500007, India.
- Academy of Scientific and Innovative Research, Ghaziabad, 201 002, India
| | - Vavilapalli Suresh
- Department of OSPC, CSIR-Indian Institute of Chemical Technology, Habsiguda, Hyderabad 500007, India.
- Academy of Scientific and Innovative Research, Ghaziabad, 201 002, India
| | - Attunuri Nagireddy
- Department of OSPC, CSIR-Indian Institute of Chemical Technology, Habsiguda, Hyderabad 500007, India.
- Academy of Scientific and Innovative Research, Ghaziabad, 201 002, India
| | | | - Maddi Sridhar Reddy
- Department of OSPC, CSIR-Indian Institute of Chemical Technology, Habsiguda, Hyderabad 500007, India.
- Academy of Scientific and Innovative Research, Ghaziabad, 201 002, India
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6
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Ahmad K, Javed A, Lanphere C, Coveney PV, Orlova EV, Howorka S. Structure and dynamics of an archetypal DNA nanoarchitecture revealed via cryo-EM and molecular dynamics simulations. Nat Commun 2023; 14:3630. [PMID: 37336895 DOI: 10.1038/s41467-023-38681-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 05/11/2023] [Indexed: 06/21/2023] Open
Abstract
DNA can be folded into rationally designed, unique, and functional materials. To fully realise the potential of these DNA materials, a fundamental understanding of their structure and dynamics is necessary, both in simple solvents as well as more complex and diverse anisotropic environments. Here we analyse an archetypal six-duplex DNA nanoarchitecture with single-particle cryo-electron microscopy and molecular dynamics simulations in solvents of tunable ionic strength and within the anisotropic environment of biological membranes. Outside lipid bilayers, the six-duplex bundle lacks the designed symmetrical barrel-type architecture. Rather, duplexes are arranged in non-hexagonal fashion and are disorted to form a wider, less elongated structure. Insertion into lipid membranes, however, restores the anticipated barrel shape due to lateral duplex compression by the bilayer. The salt concentration has a drastic impact on the stability of the inserted barrel-shaped DNA nanopore given the tunable electrostatic repulsion between the negatively charged duplexes. By synergistically combining experiments and simulations, we increase fundamental understanding into the environment-dependent structural dynamics of a widely used nanoarchitecture. This insight will pave the way for future engineering and biosensing applications.
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Affiliation(s)
- Katya Ahmad
- Centre for Computational Science, University College London, London, WC1H 0AJ, UK
| | - Abid Javed
- Department of Biological Sciences, Birkbeck, University of London, London, WC1E 7HX, UK
- Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK
| | - Conor Lanphere
- Department of Chemistry, Institute for Structural and Molecular Biology, University College London, London, WC1H0AJ, UK
| | - Peter V Coveney
- Centre for Computational Science, University College London, London, WC1H 0AJ, UK.
- Advanced Research Computing Centre, University College London, London, WC1H 0AJ, UK.
- Informatics Institute, University of Amsterdam, Amsterdam, 1090 GH, The Netherlands.
| | - Elena V Orlova
- Department of Biological Sciences, Birkbeck, University of London, London, WC1E 7HX, UK.
| | - Stefan Howorka
- Department of Chemistry, Institute for Structural and Molecular Biology, University College London, London, WC1H0AJ, UK.
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7
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Kong L, Han X, Hu P, Wang F, Li X. Three-component regioselective carboamidation of 1,3-enynes via rhodium(III)-catalyzed C-H activation. Chem Commun (Camb) 2023; 59:6690-6693. [PMID: 37161763 DOI: 10.1039/d3cc01666h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Rhodium-catalyzed regio- and stereoselective three-component carboamidation of 1,3-enynes has been realized using indoles and dioxazolones as the functionalizing reagents. A wide range of multi-substituted skipped 1,4-dienes have been constructed in good yields and excellent stereoselectivity. The stereoselectivity is under substrate control. 1,3-Enynes bearing a relatively bulky alkyne terminus reacted with Z-selectivity. In contrast, a sterically less hindered alkyne terminus tends to predominantly give the E-configured skipped diene.
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Affiliation(s)
- Lingheng Kong
- School of Chemistry and Chemical Engineering, Shaanxi Normal University (SNNU), Xi'an, 710062, China.
- College of Chemistry and Chemical Engineering, Taishan University, Tai'an, Shandong, 271000, China
| | - Xi Han
- School of Chemistry and Chemical Engineering, Shaanxi Normal University (SNNU), Xi'an, 710062, China.
| | - Panjie Hu
- School of Chemistry and Chemical Engineering, Shaanxi Normal University (SNNU), Xi'an, 710062, China.
| | - Fen Wang
- School of Chemistry and Chemical Engineering, Shaanxi Normal University (SNNU), Xi'an, 710062, China.
| | - Xingwei Li
- School of Chemistry and Chemical Engineering, Shaanxi Normal University (SNNU), Xi'an, 710062, China.
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8
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Kumar S, Kumar Sabbi T, Pingale R, Girase P, Kanchupalli V. 1,3-Diynes: A Versatile Precursor in Transition-Metal Catalyzed (Mediated) C-H Functionalizations. CHEM REC 2023; 23:e202200228. [PMID: 36512645 DOI: 10.1002/tcr.202200228] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Revised: 11/25/2022] [Indexed: 12/15/2022]
Abstract
Transition metal-catalyzed C-H functionalization of diverse arenes with alkyne units has attracted enormous attention for decades since they provide straightforward access to various functionalization/annulations, which are commonly present in bioactive compounds and natural products. Recently, conjugated alkynes (1,3-diynes) have been utilized as key coupling partner in many C-H activation reactions due to their versatile characteristic properties. The presence of two C≡C bonds in conjugated 1,3-diyne brings the new diversity in synthetic transformations, such as chemo-, regioselective pathways, mono-bis functionalizations, cascade annulations, etc. Herein, we summarized the latest developments in the realm of transition-metal-catalyzed C-H functionalizations of diverse arenes with 1,3-diynes. Moreover, we highlighted the diverse transformations, conditions, mechanisms and applications of the corresponding reaction in detail.
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Affiliation(s)
- Sanjeev Kumar
- Department of Process Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), Hyderabad 500 037, Telangana, India
| | - Tharun Kumar Sabbi
- Department of Process Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), Hyderabad 500 037, Telangana, India
| | - Rasika Pingale
- Department of Process Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), Hyderabad 500 037, Telangana, India
| | - Pradeep Girase
- Department of Process Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), Hyderabad 500 037, Telangana, India
| | - Vinaykumar Kanchupalli
- Department of Process Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), Hyderabad 500 037, Telangana, India
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9
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Li S, Yang W, Shi J, Dan T, Han Y, Cao ZC, Yang M. Synthesis of Trifluoromethyl-Substituted Allenols via Catalytic Trifluoromethylbenzoxylation of 1,3-Enynes. ACS Catal 2023. [DOI: 10.1021/acscatal.2c04978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Songrong Li
- Key Laboratory of Applied Surface and Colloid Chemistry of MOE & School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an 710119, People’s Republic of China
| | - Wenwen Yang
- Key Laboratory of Applied Surface and Colloid Chemistry of MOE & School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an 710119, People’s Republic of China
| | - Junjie Shi
- Key Laboratory of Applied Surface and Colloid Chemistry of MOE & School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an 710119, People’s Republic of China
| | - Tingting Dan
- Key Laboratory of Applied Surface and Colloid Chemistry of MOE & School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an 710119, People’s Republic of China
| | - Yujie Han
- Key Laboratory of Applied Surface and Colloid Chemistry of MOE & School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an 710119, People’s Republic of China
| | - Zhi-Chao Cao
- Anhui Agricultural University, Hefei, Anhui 230036, People’s Republic of China
| | - Mingyu Yang
- Key Laboratory of Applied Surface and Colloid Chemistry of MOE & School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an 710119, People’s Republic of China
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10
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Zhao Y, Guo L, Cao S, Xie M, Peng H, Li J, Luo S, Ma L, Wang L. DNA framework carriers with asymmetric hydrophobic drug patterns for enhanced cellular cytotoxicity. Chem Commun (Camb) 2023; 59:306-309. [PMID: 36507912 DOI: 10.1039/d2cc05763h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
We devise a class of amphiphilic drug complexes by programming hydrophobic drug patterns (HDPs) on DNA frameworks. We investigate the effect of HDPs on cellular uptake efficiency and drug potency. We achieve enhanced cytotoxicity against tumor cells by using an asymmetric HDP.
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Affiliation(s)
- Yan Zhao
- Institute of Biomedical Health Technology and Engineering, Shenzhen Bay Laboratory, Shenzhen 518132, China.,Division of Physical Biology Department, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China.
| | - Linjie Guo
- The Interdisciplinary Research Center, Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China.,Zhangjiang Laboratory, Shanghai 201210, China
| | - Shuting Cao
- Division of Physical Biology Department, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China.
| | - Mo Xie
- Key Laboratory for Organic Electronics and Information Displays (KLOEID) & Jiangsu Key Laboratory for Biosensors, Institute of Advanced Materials (IAM), National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing University of Posts and Telecommunications, Nanjing, Jiangsu 210023, China
| | - Hongzhen Peng
- The Interdisciplinary Research Center, Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China.,Zhangjiang Laboratory, Shanghai 201210, China
| | - Jiang Li
- The Interdisciplinary Research Center, Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China.,Zhangjiang Laboratory, Shanghai 201210, China
| | - Shihua Luo
- Department of Traumatology, Rui Jin Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200025, China
| | - Lan Ma
- Institute of Biomedical Health Technology and Engineering, Shenzhen Bay Laboratory, Shenzhen 518132, China.,Institute of Biopharmaceutical and Health Engineering, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
| | - Lihua Wang
- The Interdisciplinary Research Center, Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China.,Zhangjiang Laboratory, Shanghai 201210, China
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11
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Yang C, Shi L, Wang W, Xia JB, Li F. Rhodium-catalyzed aminoacylation of alkenes via carbonylative C–H activation toward poly(hetero)cyclic alkylarylketones. Org Chem Front 2023. [DOI: 10.1039/d2qo01777f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
This work discloses the facile construction of polyheterocyclic alkylarylketones by the rhodium-catalyzed carbonylative aminoacylation of alkenes involving C–H activation, which provides molecules as candidates for the screening of antitumor agents.
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Affiliation(s)
- Chao Yang
- School of Materials Science and Engineering, Dongguan University of Technology, Dongguan 523808, China
- Department of Chemistry, University of Science and Technology of China, Hefei 230026, China
| | - Lijun Shi
- State Key Laboratory for Oxo Synthesis and Selective Oxidation, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Wenlong Wang
- School of Materials Science and Engineering, Dongguan University of Technology, Dongguan 523808, China
| | - Ji-Bao Xia
- State Key Laboratory for Oxo Synthesis and Selective Oxidation, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Fuwei Li
- State Key Laboratory for Oxo Synthesis and Selective Oxidation, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou 730000, China
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12
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Qiao D, Chen Y, Tan H, Zhou R, Feng J. De novo design of transmembrane nanopores. Sci China Chem 2022. [DOI: 10.1007/s11426-022-1354-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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13
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Chiu WJ, Chen HR, Barve IJ, Sun CM. Rh(III)-Catalyzed (4 + 1) Annulation of Pyrazol-3-ones with Alkynoates via Ortho-Alkenylation/Cyclization Cascade: Synthesis of Indazole-Fused Pyrazoles. J Org Chem 2022; 87:12109-12114. [PMID: 36005756 DOI: 10.1021/acs.joc.2c01208] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A facile synthesis of novel indazole-fused pyrazoles from pyrazol-3-ones and alkynoate esters/amides via Rh(III)-catalyzed sequential C-H activation/ortho-alkenylation/intramolecular cyclization cascade is reported. The important characteristic of this method is that the resulting scaffold bearing quaternary carbon has been obtained through unusual [4 + 1] rather than expected [4 + 2] addition where alkynoate acts as a one-carbon unit.
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Affiliation(s)
- Wei-Jung Chiu
- Department of Applied Chemistry, National Yang Ming Chiao Tung University, 1001 Ta-Hseuh Road, Hsinchu 300-10, Taiwan, ROC
| | - Hong-Ren Chen
- Department of Applied Chemistry, National Yang Ming Chiao Tung University, 1001 Ta-Hseuh Road, Hsinchu 300-10, Taiwan, ROC
| | - Indrajeet J Barve
- Department of Applied Chemistry, National Yang Ming Chiao Tung University, 1001 Ta-Hseuh Road, Hsinchu 300-10, Taiwan, ROC.,Department of Chemistry, MES Abasaheb Garware College, Pune 411004, India
| | - Chung-Ming Sun
- Department of Applied Chemistry, National Yang Ming Chiao Tung University, 1001 Ta-Hseuh Road, Hsinchu 300-10, Taiwan, ROC.,Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, 100, Shih-Chuan 1st Road, Kaohsiung 807-08, Taiwan, ROC
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14
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Xu C, Tassone JP, Mercado BQ, Ellman JA. Stereoselective Synthesis of Allenyl Alcohols by Cobalt(III)-Catalyzed Sequential C-H Bond Addition to 1,3-Enynes and Aldehydes. Angew Chem Int Ed Engl 2022; 61:e202202364. [PMID: 35420724 PMCID: PMC9189073 DOI: 10.1002/anie.202202364] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2022] [Indexed: 12/11/2022]
Abstract
An efficient and stereoselective CoIII -catalyzed sequential C-H bond addition to 1,3-enynes and aldehydes is disclosed. This transformation represents the first example of sequential C-H bond additions to 1,3-enynes and a second coupling partner and provides the first example of preparing allenes by C-H bond addition to 1,3-enynes. A wide range of aldehydes, C-H bond substrates and 1,3-enynes with large substituents on the alkynes are effective substrates. The allenyl alcohol products can be further converted to dihydrofurans with high stereoselectivity either in situ or under Ag-mediated cyclization conditions. The allenyl silyl group can also be transferred to the adjacent alcohol by a Brook rearrangement. Moreover, a mechanism for the transformation is proposed supported by X-ray structural characterization of a cobaltacycle intermediate.
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Affiliation(s)
- Chaofan Xu
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, CT 06520, USA
| | - Joseph P Tassone
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, CT 06520, USA
| | - Brandon Q Mercado
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, CT 06520, USA
| | - Jonathan A Ellman
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, CT 06520, USA
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15
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Mishra DR, Panda BS, Nayak S, Panda J, Mohapatra S. Recent Advances in the Synthesis of 5‐Membered
N
‐Heterocycles via Rhodium Catalysed Cascade Reactions. ChemistrySelect 2022. [DOI: 10.1002/slct.202200531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Deepak R. Mishra
- Organic Synthesis Laboratory Department of Chemistry Ravenshaw University Cuttack 753003 Odisha India
| | - Bhabani S. Panda
- Organic Synthesis Laboratory Department of Chemistry Ravenshaw University Cuttack 753003 Odisha India
| | - Sabita Nayak
- Organic Synthesis Laboratory Department of Chemistry Ravenshaw University Cuttack 753003 Odisha India
| | - Jasmine Panda
- Organic Synthesis Laboratory Department of Chemistry Ravenshaw University Cuttack 753003 Odisha India
| | - Seetaram Mohapatra
- Organic Synthesis Laboratory Department of Chemistry Ravenshaw University Cuttack 753003 Odisha India
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16
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Xu C, Tassone JP, Mercado BQ, Ellman JA. Stereoselective Synthesis of Allenyl Alcohols by Cobalt(III)‐Catalyzed Sequential C−H Bond Addition to 1,3‐Enynes and Aldehydes. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202202364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
| | | | | | - Jonathan Anthony Ellman
- Yale University Dept. of Chemistry 225 Prospect StreetPO Box 208107 06520 8107 New Haven UNITED STATES
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17
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Sindhe H, Chaudhary B, Chowdhury N, Kamble A, Kumar V, Lad A, Sharma S. Recent advances in transition-metal catalyzed directed C–H functionalization with fluorinated building blocks. Org Chem Front 2022. [DOI: 10.1039/d1qo01544c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This review focuses on the advances in transition-metal catalyzed reactions with fluorinated building blocks via directed C–H bond activation for the construction of diverse organic molecules with an insight into the probable mechanistic pathway.
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Affiliation(s)
- Haritha Sindhe
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Ahmedabad (NIPER-A), Gandhinagar, Gujarat-382355, India
| | - Bharatkumar Chaudhary
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Ahmedabad (NIPER-A), Gandhinagar, Gujarat-382355, India
| | - Neelanjan Chowdhury
- Department of Natural Products, National Institute of Pharmaceutical Education and Research, Ahmedabad (NIPER-A), Gandhinagar, Gujarat-382355, India
| | - Akshay Kamble
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Ahmedabad (NIPER-A), Gandhinagar, Gujarat-382355, India
| | - Vivek Kumar
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Ahmedabad (NIPER-A), Gandhinagar, Gujarat-382355, India
| | - Aishwarya Lad
- Department of Natural Products, National Institute of Pharmaceutical Education and Research, Ahmedabad (NIPER-A), Gandhinagar, Gujarat-382355, India
| | - Satyasheel Sharma
- Department of Natural Products, National Institute of Pharmaceutical Education and Research, Ahmedabad (NIPER-A), Gandhinagar, Gujarat-382355, India
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18
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He Y, Wang H, Xu L, Li DY, Ge JH, Feng DF, Feng W, Zou G, Liu PN. Direct Access to Bridged Polycyclic Skeletons by Merging Oxidative C-H Annulation and Cascade [4 + 2] Cycloaddition. Org Lett 2021; 24:121-126. [PMID: 34931834 DOI: 10.1021/acs.orglett.1c03652] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
We report a step-economic strategy for the direct synthesis of bridged polycyclic skeletons by merging oxidative C-H annulation and cascade cycloaddition. In the protocol, spiro[cyclopentane-1,3'-indoline]-2,4-dien-2'-ones were first synthesized by oxidative C-H annulation of ethylideneoxindoles with alkynes. Subsequent cascade [4 + 2] cycloaddition with dienophiles gave the bridged bicyclo[2.2.1]quinolin-2(1H)-ones and enabled the one-pot construction of two quaternary carbon centers and three C-C bonds. Mechanistic investigations of the latter suggest a cascade ring-opening, 1,5-sigmatropic rearrangement, and [4 + 2] cycloaddition process.
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Affiliation(s)
- Yan He
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China.,School of Materials and Chemical Engineering, Xuzhou University of Technology, Xuzhou 221018, China
| | - Heng Wang
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Li Xu
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Deng-Yuan Li
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Ji-Hong Ge
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Da-Fu Feng
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Wei Feng
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Gang Zou
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Pei-Nian Liu
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
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19
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Chemo‐ and Regioselective Synthesis of Functionalized 1
H
‐imidazo[1,5‐
a
]indol‐3(2
H
)‐ones via a Redox‐Neutral Rhodium(III)‐Catalyzed [4+1] Annulation between Indoles and Alkynes. Adv Synth Catal 2021. [DOI: 10.1002/adsc.202100555] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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20
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Naskar S, Maiti PK. Mechanical properties of DNA and DNA nanostructures: comparison of atomistic, Martini and oxDNA models. J Mater Chem B 2021; 9:5102-5113. [PMID: 34127998 DOI: 10.1039/d0tb02970j] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The flexibility and stiffness of small DNA molecules play a fundamental role ranging from several biophysical processes to nano-technological applications. Here, we estimate the mechanical properties of short double-stranded DNA (dsDNA) with lengths ranging from 12 base-pairs (bp) to 56 bp, paranemic crossover (PX) DNA and hexagonal DNA nanotubes (DNTs) using two widely used coarse-grained models - Martini and oxDNA. To calculate the persistence length (Lp) and the stretch modulus (γ) of the dsDNA, we incorporate the worm-like chain and elastic rod model, while for the DNTs, we implement our previously developed theoretical framework. We compare and contrast all of the results with previously reported all-atom molecular dynamics (MD) simulations and experimental results. The mechanical properties of dsDNA (Lp ∼ 50 nm, γ ∼ 800-1500 pN), PX DNA (γ ∼ 1600-2000 pN) and DNTs (Lp ∼ 1-10 μm, γ ∼ 6000-8000 pN) estimated using the Martini soft elastic network and oxDNA are in very good agreement with the all-atom MD and experimental values, while the stiff elastic network Martini reproduces values of Lp and γ which are an order of magnitude higher. The high flexibility of small dsDNA is also depicted in our calculations. However, Martini models proved inadequate to capture the salt concentration effects on the mechanical properties with increasing salt molarity. oxDNA captures the salt concentration effect on the small dsDNA mechanics. But it is found to be ineffective for reproducing the salt-dependent mechanical properties of DNTs. Also, unlike Martini, the time evolved PX DNA and DNT structures from the oxDNA models are comparable to the all-atom MD simulated structures. Our findings provide a route to study the mechanical properties of DNA and DNA based nanostructures with increased time and length scales and has a remarkable implication in the context of DNA nanotechnology.
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Affiliation(s)
- Supriyo Naskar
- Center for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore, 560012, India.
| | - Prabal K Maiti
- Center for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore, 560012, India.
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21
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Corpas J, Mauleón P, Arrayás RG, Carretero JC. Transition-Metal-Catalyzed Functionalization of Alkynes with Organoboron Reagents: New Trends, Mechanistic Insights, and Applications. ACS Catal 2021. [DOI: 10.1021/acscatal.1c01421] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Javier Corpas
- Department of Organic Chemistry, Faculty of Sciences, Universidad Autónoma de Madrid (UAM), Cantoblanco, 28049 Madrid, Spain
| | - Pablo Mauleón
- Department of Organic Chemistry, Faculty of Sciences, Universidad Autónoma de Madrid (UAM), Cantoblanco, 28049 Madrid, Spain
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid (UAM), Cantoblanco, 28049 Madrid, Spain
| | - Ramón Gómez Arrayás
- Department of Organic Chemistry, Faculty of Sciences, Universidad Autónoma de Madrid (UAM), Cantoblanco, 28049 Madrid, Spain
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid (UAM), Cantoblanco, 28049 Madrid, Spain
| | - Juan C. Carretero
- Department of Organic Chemistry, Faculty of Sciences, Universidad Autónoma de Madrid (UAM), Cantoblanco, 28049 Madrid, Spain
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid (UAM), Cantoblanco, 28049 Madrid, Spain
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22
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Zhang H, Lin S, Gao H, Zhang K, Wang Y, Zhou Z, Yi W. Chemodivergent assembly of ortho-functionalized phenols with tunable selectivity via rhodium(III)-catalyzed and solvent-controlled C-H activation. Commun Chem 2021; 4:81. [PMID: 36697536 PMCID: PMC9814747 DOI: 10.1038/s42004-021-00518-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Accepted: 05/07/2021] [Indexed: 01/28/2023] Open
Abstract
Ortho-functionalized phenols and their derivatives represent prominent structural motifs and building blocks in medicinal and synthetic chemistry. While numerous synthetic approaches exist, the development of atom-/step-economic and practical methods for the chemodivergent assembly of diverse ortho-functionalized phenols based on fixed catalyst/substrates remains challenging. Here, by selectively controlling the reactivities of different sites in methylenecyclopropane core, Rh(III)-catalyzed redox-neutral and tunable C-H functionalizations of N-phenoxyacetamides are realized, providing access to both ortho-functionalized phenols bearing linear dienyl, cyclopropyl or allyl ether groups, and cyclic 3-ethylidene 2,3-dihydrobenzofuran frameworks under mild cross-coupling conditions. These divergent transformations feature broad substrate compatibility, synthetic applications and excellent site-/regio-/chemoselectivity. Experimental and computational mechanistic studies reveal that distinct catalytic modes involving selective β-C/β-H elimination, π-allylation, inter-/intramolecular nucleophilic substitution cascade and β-H' elimination processes enabled by different solvent-mediated and coupling partner-controlled reaction conditions are crucial for achieving chemodivergence, among which a structurally distinct Rh(V) species derived from a five-membered rhodacycle is proposed as the corresponding active intermediates.
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Affiliation(s)
- Haiman Zhang
- grid.410737.60000 0000 8653 1072Guangzhou Municipal and Guangdong Provincial Key Laboratory of Protein Modification and Degradation & Molecular Target and Clinical Pharmacology, State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong China
| | - Shuang Lin
- grid.410737.60000 0000 8653 1072Guangzhou Municipal and Guangdong Provincial Key Laboratory of Protein Modification and Degradation & Molecular Target and Clinical Pharmacology, State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong China
| | - Hui Gao
- grid.410737.60000 0000 8653 1072Guangzhou Municipal and Guangdong Provincial Key Laboratory of Protein Modification and Degradation & Molecular Target and Clinical Pharmacology, State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong China
| | - Kaixin Zhang
- grid.410737.60000 0000 8653 1072Guangzhou Municipal and Guangdong Provincial Key Laboratory of Protein Modification and Degradation & Molecular Target and Clinical Pharmacology, State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong China ,grid.12981.330000 0001 2360 039XSchool of Chemical Engineering and Technology, Sun Yat-Sen University, Guangzhou, Guangdong China
| | - Yi Wang
- grid.410737.60000 0000 8653 1072Guangzhou Municipal and Guangdong Provincial Key Laboratory of Protein Modification and Degradation & Molecular Target and Clinical Pharmacology, State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong China
| | - Zhi Zhou
- grid.410737.60000 0000 8653 1072Guangzhou Municipal and Guangdong Provincial Key Laboratory of Protein Modification and Degradation & Molecular Target and Clinical Pharmacology, State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong China
| | - Wei Yi
- grid.410737.60000 0000 8653 1072Guangzhou Municipal and Guangdong Provincial Key Laboratory of Protein Modification and Degradation & Molecular Target and Clinical Pharmacology, State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong China
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23
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Chen H, Zhou L, Li C, He X, Huang J, Yang X, Shi H, Wang K, Liu J. Controlled dimerization of artificial membrane receptors for transmembrane signal transduction. Chem Sci 2021; 12:8224-8230. [PMID: 34194713 PMCID: PMC8208304 DOI: 10.1039/d1sc00718a] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
In biology, membrane-spanning proteins are responsible for the transmission of chemical signals across membranes, including the signal recognition-mediated conformational change of transmembrane receptors at the cell surface, and a trigger of an intracellular phosphorylation cascade. The ability to reproduce such biological processes in artificial systems has potential applications in smart sensing, drug delivery, and synthetic biology. Here, an artificial transmembrane receptors signaling system was designed and constructed based on modular DNA scaffolds. The artificial transmembrane receptors in this system are composed of three functional modules: signal recognition, lipophilic transmembrane linker, and signal output modules. Adenosine triphosphate (ATP) served as an external signal input to trigger the dimerization of two artificial receptors on membranes through a proximity effect. This effect induced the formation of a G-quadruplex, which served as a peroxidase-like enzyme to facilitate a signal output measured by either fluorescence or absorbance in the lipid bilayer vesicles. The broader utility of this modular method was further demonstrated using a lysozyme-binding aptamer instead of an ATP-binding aptamer. Therefore, this work provides a modular and generalizable method for the design of artificial transmembrane receptors. The flexibility of this synthetic methodology will allow researchers to incorporate different functional modules while retaining the same molecular framework for signal transduction. An artificial transmbrane signal transducer was developed through the chemical input-mediated dimerization of artificial DNA transmembrane receptors and the subsequent activation of a cascade of events inside the vesicles.![]()
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Affiliation(s)
- Hui Chen
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province, Hunan University Changsha 410082 P. R. China
| | - Li Zhou
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province, Hunan University Changsha 410082 P. R. China
| | - Chunying Li
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province, Hunan University Changsha 410082 P. R. China
| | - Xiaoxiao He
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province, Hunan University Changsha 410082 P. R. China
| | - Jin Huang
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province, Hunan University Changsha 410082 P. R. China
| | - Xiaohai Yang
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province, Hunan University Changsha 410082 P. R. China
| | - Hui Shi
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province, Hunan University Changsha 410082 P. R. China
| | - Kemin Wang
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province, Hunan University Changsha 410082 P. R. China
| | - Jianbo Liu
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province, Hunan University Changsha 410082 P. R. China
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24
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Shi Y, Chen C, Yang Y, zhou B. Rh(III)-catalyzed selective C7-H functionalization of indolines with 1,3-enynes enables access to six-membered 1,7-fused indolines. Tetrahedron Lett 2021. [DOI: 10.1016/j.tetlet.2021.153065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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25
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Liu Y, Wijesekara P, Kumar S, Wang W, Ren X, Taylor RE. The effects of overhang placement and multivalency on cell labeling by DNA origami. NANOSCALE 2021; 13:6819-6828. [PMID: 33885483 PMCID: PMC8161690 DOI: 10.1039/d0nr09212f] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Through targeted binding to the cell membrane, structural DNA nanotechnology has the potential to guide and affix biomolecules such as drugs, growth factors and nanobiosensors to the surfaces of cells. In this study, we investigated the targeted binding efficiency of three distinct DNA origami shapes to cultured endothelial cells via cholesterol anchors. Our results showed that the labeling efficiency is highly dependent on the shape of the origami as well as the number and the location of the binding overhangs. With a uniform surface spacing of binding overhangs, 3D isotropic nanospheres and 1D anisotropic nanorods labeled cells effectively, and the isotropic nanosphere labeling fit well with an independent binding model. Face-decoration and edge-decoration of the anisotropic nanotile were performed to investigate the effects of binding overhang location on cell labeling, and only the edge-decorated nanotiles were successful at labeling cells. Edge proximity studies demonstrated that the labeling efficiency can be modulated in both nanotiles and nanorods by moving the binding overhangs towards the edges and vertices, respectively. Furthermore, we demonstrated that while double-stranded DNA (dsDNA) bridge tethers can rescue the labeling efficiency of the face-decorated rectangular plate, this effect is also dependent on the proximity of bridge tethers to the edges or vertices of the nanostructures. A final comparison of all three nanoshapes revealed that the end-labeled nanorod and the nanosphere achieved the highest absolute labeling intensities, but the highest signal-to-noise ratio, calculated as the ratio of overall labeling to initiator-free background labeling, was achieved by the end-labeled nanorod, with the edge-labeled nanotile coming in second place slightly ahead of the nanosphere. The findings from this study can help us further understand the factors that affect membrane attachment using cholesterol anchors, thus providing guidelines for the rational design of future functional DNA nanostructures.
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Affiliation(s)
- Ying Liu
- Department of Mechanical Engineering, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, USA.
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26
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Piao J, Yuan W, Dong Y. Recent Progress of DNA Nanostructures on Amphiphilic Membranes. Macromol Biosci 2021; 21:e2000440. [PMID: 33759366 DOI: 10.1002/mabi.202000440] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 02/24/2021] [Indexed: 11/11/2022]
Abstract
Employing DNA nanostructures mimicking membrane proteins on artificial amphiphilic membranes have been widely developed to understand the structures and functions of the natural membrane systems. In this review, the recent developments in artificial systems constructed by amphiphilic membranes and DNA nanostructures are summarized. First, the preparations and properties of the amphipathic bilayer models are introduced. Second, the interactions are discussed between the membrane and the DNA nanostructures, as well as their coassembly behaviors. Next, the alternative systems related to membrane protein-mediated signal transmission, selective distribution, transmembrane channels, and membrane fusion are also introduced. Moreover, the constructions of membrane skeleton protein-mimicking DNA nanostructures are also highlighted.
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Affiliation(s)
- Jiafang Piao
- CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Chinese Academy of Sciences, Institute of Chemistry, Beijing, 100190, China.,Beijing National Laboratory for Molecular Sciences, Chinese Academy of Sciences, Institute of Chemistry, Beijing, 100190, China
| | - Wei Yuan
- CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Chinese Academy of Sciences, Institute of Chemistry, Beijing, 100190, China.,Beijing National Laboratory for Molecular Sciences, Chinese Academy of Sciences, Institute of Chemistry, Beijing, 100190, China
| | - Yuanchen Dong
- CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Chinese Academy of Sciences, Institute of Chemistry, Beijing, 100190, China.,Beijing National Laboratory for Molecular Sciences, Chinese Academy of Sciences, Institute of Chemistry, Beijing, 100190, China
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27
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Feng L, Li J, Sun J, Wang L, Fan C, Shen J. Recent Advances of DNA Nanostructure-Based Cell Membrane Engineering. Adv Healthc Mater 2021; 10:e2001718. [PMID: 33458966 DOI: 10.1002/adhm.202001718] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 12/20/2020] [Indexed: 01/30/2023]
Abstract
Materials that can regulate the composition and structure of the cell membrane to fabricate engineered cells with defined functions are in high demand. Compared with other biomolecules, DNA has unique advantages in cell membrane engineering due to its excellent programmability and biocompatibility. Especially, the near-atomic scale precision of DNA nanostructures facilitates the investigation of structure-property relations on the cell membrane. In this review, first the state of the art of functional DNA nanostructures is summarized, and then the overview of the use of DNA nanostructures to engineer the cell membrane is presented. Subsequently, applications of DNA nanostructures in modifying cell membrane morphology, controlling ions transport, and synthesizing high precise liposomes are highlighted. Finally, the challenges and outlook on using DNA nanostructures for cell membrane engineering are discussed.
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Affiliation(s)
- Lingyu Feng
- Division of Physical Biology CAS Key Laboratory of Interfacial Physics and Technology Shanghai Institute of Applied Physics Chinese Academy of Sciences Shanghai 201800 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Jiang Li
- Division of Physical Biology CAS Key Laboratory of Interfacial Physics and Technology Shanghai Institute of Applied Physics Chinese Academy of Sciences Shanghai 201800 China
- University of Chinese Academy of Sciences Beijing 100049 China
- Bioimaging Center Shanghai Synchrotron Radiation Facility Zhangjiang Laboratory Shanghai Advanced Research Institute Chinese Academy of Sciences Shanghai 201210 China
| | - Jielin Sun
- Key Laboratory of Systems Biomedicine (Ministry of Education) Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University Shanghai 200240 China
| | - Lihua Wang
- Division of Physical Biology CAS Key Laboratory of Interfacial Physics and Technology Shanghai Institute of Applied Physics Chinese Academy of Sciences Shanghai 201800 China
- University of Chinese Academy of Sciences Beijing 100049 China
- Bioimaging Center Shanghai Synchrotron Radiation Facility Zhangjiang Laboratory Shanghai Advanced Research Institute Chinese Academy of Sciences Shanghai 201210 China
| | - Chunhai Fan
- School of Chemistry and Chemical Engineering Frontiers Science Center for Transformative Molecules and National Center for Translational Medicine Shanghai Jiao Tong University Shanghai 200240 China
| | - Jianlei Shen
- School of Chemistry and Chemical Engineering Frontiers Science Center for Transformative Molecules and National Center for Translational Medicine Shanghai Jiao Tong University Shanghai 200240 China
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28
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Wu X, Fan J, Huang X, Ma S. Rh-Catalyzed oxidative homo-coupling cyclization of 2,3-allenols to conjugated furylenones. Org Chem Front 2021. [DOI: 10.1039/d1qo00599e] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
An unexpected rhodium-catalyzed highly regio- and stereo-selective bimolecular nucleophilic oxyrhodation/insertion/1,4-Rh migration/β-H elimination reaction of 2,3-allenols affording (2,5-dihydrofuran-3-yl)but-2(E)-en-1-one derivatives is reported.
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Affiliation(s)
- Xiaoyan Wu
- Laboratory of Molecular Recognition and Synthesis
- Department of Chemistry
- Zhejiang University
- Hangzhou 310027
- People's Republic of China
| | - Junjie Fan
- Laboratory of Molecular Recognition and Synthesis
- Department of Chemistry
- Zhejiang University
- Hangzhou 310027
- People's Republic of China
| | - Xin Huang
- Laboratory of Molecular Recognition and Synthesis
- Department of Chemistry
- Zhejiang University
- Hangzhou 310027
- People's Republic of China
| | - Shengming Ma
- Laboratory of Molecular Recognition and Synthesis
- Department of Chemistry
- Zhejiang University
- Hangzhou 310027
- People's Republic of China
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29
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Lanphere C, Offenbartl-Stiegert D, Dorey A, Pugh G, Georgiou E, Xing Y, Burns JR, Howorka S. Design, assembly, and characterization of membrane-spanning DNA nanopores. Nat Protoc 2020; 16:86-130. [PMID: 33349702 DOI: 10.1038/s41596-020-0331-7] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Accepted: 04/06/2020] [Indexed: 01/08/2023]
Abstract
DNA nanopores are bio-inspired nanostructures that control molecular transport across lipid bilayer membranes. Researchers can readily engineer the structure and function of DNA nanopores to synergistically combine the strengths of DNA nanotechnology and nanopores. The pores can be harnessed in a wide range of areas, including biosensing, single-molecule chemistry, and single-molecule biophysics, as well as in cell biology and synthetic biology. Here, we provide a protocol for the rational design of nanobarrel-like DNA pores and larger DNA origami nanopores for targeted applications. We discuss strategies for the pores' chemical modification with lipid anchors to enable them to be inserted into membranes such as small unilamellar vesicles (SUVs) and planar lipid bilayers. The procedure covers the self-assembly of DNA nanopores via thermal annealing, their characterization using gel electrophoresis, purification, and direct visualization with transmission electron microscopy and atomic force microscopy. We also describe a gel assay to determine pore-membrane binding and discuss how to use single-channel current recordings and dye flux assays to confirm transport through the pores. We expect this protocol to take approximately 1 week to complete for DNA nanobarrel pores and 2-3 weeks for DNA origami pores.
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Affiliation(s)
- Conor Lanphere
- Department of Chemistry & Institute of Structural Molecular Biology, University College London, London, UK
| | - Daniel Offenbartl-Stiegert
- Department of Chemistry & Institute of Structural Molecular Biology, University College London, London, UK
| | - Adam Dorey
- Department of Chemistry & Institute of Structural Molecular Biology, University College London, London, UK
| | - Genevieve Pugh
- Department of Chemistry & Institute of Structural Molecular Biology, University College London, London, UK
| | - Elena Georgiou
- Department of Chemistry & Institute of Structural Molecular Biology, University College London, London, UK
| | - Yongzheng Xing
- Department of Chemistry & Institute of Structural Molecular Biology, University College London, London, UK
| | - Jonathan R Burns
- Department of Chemistry & Institute of Structural Molecular Biology, University College London, London, UK.
| | - Stefan Howorka
- Department of Chemistry & Institute of Structural Molecular Biology, University College London, London, UK.
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30
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Sun J, Yuan W, Tian R, Wang P, Zhang X, Li X. Rhodium(III)‐Catalyzed Asymmetric [4+1] and [5+1] Annulation of Arenes and 1,3‐Enynes: A Distinct Mechanism of Allyl Formation and Allyl Functionalization. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202010832] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Jiaqiong Sun
- School of Chemistry and Chemical Engineering Shaanxi Normal University (SNNU) Xi'an 710062 China
| | - Weiliang Yuan
- School of Chemistry and Chemical Engineering Shaanxi Normal University (SNNU) Xi'an 710062 China
| | - Rong Tian
- School of Chemistry and Chemical Engineering Shaanxi Normal University (SNNU) Xi'an 710062 China
| | - Peiyuan Wang
- School of Chemistry and Chemical Engineering Shaanxi Normal University (SNNU) Xi'an 710062 China
| | - Xue‐Peng Zhang
- School of Chemistry and Chemical Engineering Shaanxi Normal University (SNNU) Xi'an 710062 China
| | - Xingwei Li
- School of Chemistry and Chemical Engineering Shaanxi Normal University (SNNU) Xi'an 710062 China
- Institute of Molecular Science and Engineering, Institute of Frontier and Interdisciplinary Sciences Shandong University Qingdao 266237 China
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31
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Sun J, Yuan W, Tian R, Wang P, Zhang X, Li X. Rhodium(III)‐Catalyzed Asymmetric [4+1] and [5+1] Annulation of Arenes and 1,3‐Enynes: A Distinct Mechanism of Allyl Formation and Allyl Functionalization. Angew Chem Int Ed Engl 2020; 59:22706-22713. [DOI: 10.1002/anie.202010832] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Indexed: 12/11/2022]
Affiliation(s)
- Jiaqiong Sun
- School of Chemistry and Chemical Engineering Shaanxi Normal University (SNNU) Xi'an 710062 China
| | - Weiliang Yuan
- School of Chemistry and Chemical Engineering Shaanxi Normal University (SNNU) Xi'an 710062 China
| | - Rong Tian
- School of Chemistry and Chemical Engineering Shaanxi Normal University (SNNU) Xi'an 710062 China
| | - Peiyuan Wang
- School of Chemistry and Chemical Engineering Shaanxi Normal University (SNNU) Xi'an 710062 China
| | - Xue‐Peng Zhang
- School of Chemistry and Chemical Engineering Shaanxi Normal University (SNNU) Xi'an 710062 China
| | - Xingwei Li
- School of Chemistry and Chemical Engineering Shaanxi Normal University (SNNU) Xi'an 710062 China
- Institute of Molecular Science and Engineering, Institute of Frontier and Interdisciplinary Sciences Shandong University Qingdao 266237 China
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Zhang X, Chen Q, Song R, Xu J, Tian W, Li S, Jin Z, Chi YR. Carbene-Catalyzed α,γ-Deuteration of Enals under Oxidative Conditions. ACS Catal 2020. [DOI: 10.1021/acscatal.0c00636] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Xiaolei Zhang
- Division of Chemistry & Biological Chemistry, School of Physical & Mathematical Sciences, Nanyang Technological University, Singapore 637371, Singapore
| | - Qiao Chen
- Division of Chemistry & Biological Chemistry, School of Physical & Mathematical Sciences, Nanyang Technological University, Singapore 637371, Singapore
| | - Runjiang Song
- Division of Chemistry & Biological Chemistry, School of Physical & Mathematical Sciences, Nanyang Technological University, Singapore 637371, Singapore
| | - Jun Xu
- Division of Chemistry & Biological Chemistry, School of Physical & Mathematical Sciences, Nanyang Technological University, Singapore 637371, Singapore
- School of Pharmacy, Guizhou University of Traditional Chinese Medicine, Huaxi District, Guiyang 550025, China
| | - Weiyi Tian
- School of Pharmacy, Guizhou University of Traditional Chinese Medicine, Huaxi District, Guiyang 550025, China
| | - Shaoyuan Li
- Division of Chemistry & Biological Chemistry, School of Physical & Mathematical Sciences, Nanyang Technological University, Singapore 637371, Singapore
- Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Huaxi District, Guiyang 550025, China
| | - Zhichao Jin
- Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Huaxi District, Guiyang 550025, China
| | - Yonggui Robin Chi
- Division of Chemistry & Biological Chemistry, School of Physical & Mathematical Sciences, Nanyang Technological University, Singapore 637371, Singapore
- Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Huaxi District, Guiyang 550025, China
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33
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Lv S, Liu H, Kang J, Luo Y, Gong T, Dong Z, Sun G, He C, Sun X, Wang L. Palladium-catalyzed enol/enolate directed oxidative annulation: functionalized naphthofuroquinone synthesis and bioactivity evaluation. Chem Commun (Camb) 2020; 55:14729-14732. [PMID: 31690911 DOI: 10.1039/c9cc05233j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A palladium-promoted oxidative annulation reaction for the synthesis of structurally diverse naphthoquinone-containing heterocycles has been developed, providing switchable access to 1,2-naphthofuroquinones and densely functionalized cyclobutene-fused 1,4-naphthofuroquinones by selective enol/enolate-directed processes. The synthetic application was extended by late-stage functionalization of an anti-HIV drug. The practical value of 1,2-naphthofuroquinone synthesis was highlighted in endothelial protective lead compound development.
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Affiliation(s)
- Shuaipeng Lv
- Institute of Medicinal Plant Development, Chinese Academy of Medical Science & Peking Union Medical College, Beijing 100193, P. R. China.
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34
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Shen Q, Grome MW, Yang Y, Lin C. Engineering Lipid Membranes with Programmable DNA Nanostructures. ADVANCED BIOSYSTEMS 2020; 4:1900215. [PMID: 31934608 PMCID: PMC6957268 DOI: 10.1002/adbi.201900215] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Indexed: 12/18/2022]
Abstract
Lipid and DNA are abundant biomolecules with critical functions in cells. The water-insoluble, amphipathic lipid molecules are best known for their roles in energy storage (e.g. as triglyceride), signaling (e.g. as sphingolipid), and compartmentalization (e.g. by forming membrane-enclosed bodies). The soluble, highly negatively charged DNA, which stores cells' genetic information, has proven to be an excellent material for constructing programmable nanostructures in vitro thanks to its self-assembling capabilities. These two seemingly distant molecules make contact within cell nuclei, often via lipidated proteins, with proposed functions of modulating chromatin structures. Carefully formulated lipid/DNA complexes are promising reagents for gene therapy. The past few years saw an emerging research field of interfacing DNA nanostructures with lipid membranes, with an overarching goal of generating DNA/lipid hybrid materials that possess novel and controllable structure, dynamics, and function. An arsenal of DNA-based tools has been created to coat, mold, deform, and penetrate lipid bilayers, affording us the ability to manipulate membranes with nanoscopic precision. These membrane engineering methods not only enable quantitative biophysical studies, but also open new opportunities in synthetic biology (e.g. artificial cells) and therapeutics (e.g. drug delivery).
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Affiliation(s)
- Qi Shen
- Department of Cell Biology and Nanobiology Institute, Yale University
| | - Michael W Grome
- Department of Cell Biology and Nanobiology Institute, Yale University
| | - Yang Yang
- Department of Cell Biology and Nanobiology Institute, Yale University
- Institute of Molecular Medicine, Renji Hospital, Shanghai Jiao Tong University School of Medicine
| | - Chenxiang Lin
- Department of Cell Biology and Nanobiology Institute, Yale University
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35
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Bagheri Y, Chedid S, Shafiei F, Zhao B, You M. A quantitative assessment of the dynamic modification of lipid-DNA probes on live cell membranes. Chem Sci 2019; 10:11030-11040. [PMID: 32055389 PMCID: PMC7003967 DOI: 10.1039/c9sc04251b] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2019] [Accepted: 10/23/2019] [Indexed: 12/14/2022] Open
Abstract
Synthetic lipid-DNA probes have recently attracted much attention for cell membrane analysis, transmembrane signal transduction, and regulating intercellular networks. These lipid-DNA probes can spontaneously insert onto plasma membranes simply after incubation. The highly precise and controllable DNA interactions have further allowed the programmable manipulation of these membrane-anchored functional probes. However, we still have quite limited understanding of how these lipid-DNA probes interact with cell membranes and also what parameters determine this process. In this study, we have systematically studied the dynamic process of cell membrane modification with a group of lipid-DNA probes. Our results indicated that the hydrophobicity of the lipid-DNA probes is strongly correlated with their membrane insertion and departure rates. Most cell membrane insertion stems from the monomeric form of probes, rather than the aggregates. Lipid-DNA probes can be removed from cell membranes through either endocytosis or direct outflow into the solution. As a result, long-term probe modifications on cell membranes can be realized in the presence of excess probes in the solution and/or endocytosis inhibitors. For the first time, we have successfully improved the membrane persistence of lipid-DNA probes to more than 24 h. Our quantitative data have dramatically improved our understanding of how lipid-DNA probes dynamically interact with cell membranes. These results can be further used to allow a broad range of applications of lipid-DNA probes for cell membrane analysis and regulation.
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Affiliation(s)
- Yousef Bagheri
- Department of Chemistry , University of Massachusetts , Amherst , MA 01003 , USA . ;
| | - Sara Chedid
- Department of Chemistry , University of Massachusetts , Amherst , MA 01003 , USA . ;
| | - Fatemeh Shafiei
- Department of Chemistry , University of Massachusetts , Amherst , MA 01003 , USA . ;
| | - Bin Zhao
- Department of Chemistry , University of Massachusetts , Amherst , MA 01003 , USA . ;
| | - Mingxu You
- Department of Chemistry , University of Massachusetts , Amherst , MA 01003 , USA . ;
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36
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Thomsen RP, Malle MG, Okholm AH, Krishnan S, Bohr SSR, Sørensen RS, Ries O, Vogel S, Simmel FC, Hatzakis NS, Kjems J. A large size-selective DNA nanopore with sensing applications. Nat Commun 2019; 10:5655. [PMID: 31827087 PMCID: PMC6906287 DOI: 10.1038/s41467-019-13284-1] [Citation(s) in RCA: 110] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Accepted: 10/29/2019] [Indexed: 01/17/2023] Open
Abstract
Transmembrane nanostructures like ion channels and transporters perform key biological functions by controlling flow of molecules across lipid bilayers. Much work has gone into engineering artificial nanopores and applications in selective gating of molecules, label-free detection/sensing of biomolecules and DNA sequencing have shown promise. Here, we use DNA origami to create a synthetic 9 nm wide DNA nanopore, controlled by programmable, lipidated flaps and equipped with a size-selective gating system for the translocation of macromolecules. Successful assembly and insertion of the nanopore into lipid bilayers are validated by transmission electron microscopy (TEM), while selective translocation of cargo and the pore mechanosensitivity are studied using optical methods, including single-molecule, total internal reflection fluorescence (TIRF) microscopy. Size-specific cargo translocation and oligonucleotide-triggered opening of the pore are demonstrated showing that the DNA nanopore can function as a real-time detection system for external signals, offering potential for a variety of highly parallelized sensing applications.
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Affiliation(s)
- Rasmus P Thomsen
- Interdisciplinary Nanoscience Center, Aarhus University, Aarhus C, 8000, Denmark
| | - Mette Galsgaard Malle
- Department of Chemistry & Nanoscience Center, University of Copenhagen, Universitetsparken 5, Copenhagen, 2100, Denmark.,Novo Nordisk Foundation Centre for Protein Research, University of Copenhagen, Blegdamsvej 3B, 2200, Copenhagen, Denmark
| | - Anders Hauge Okholm
- Interdisciplinary Nanoscience Center, Aarhus University, Aarhus C, 8000, Denmark.,Arla Innovation Centre, Agro Food Park 19, 8200, Aarhus N, Denmark
| | - Swati Krishnan
- Physics Department and ZNN/WSI, Technische Universität München, 85748, Garching, Germany
| | - Søren S-R Bohr
- Department of Chemistry & Nanoscience Center, University of Copenhagen, Universitetsparken 5, Copenhagen, 2100, Denmark.,Novo Nordisk Foundation Centre for Protein Research, University of Copenhagen, Blegdamsvej 3B, 2200, Copenhagen, Denmark
| | | | - Oliver Ries
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230, Odense M, Denmark
| | - Stefan Vogel
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230, Odense M, Denmark
| | - Friedrich C Simmel
- Physics Department and ZNN/WSI, Technische Universität München, 85748, Garching, Germany
| | - Nikos S Hatzakis
- Department of Chemistry & Nanoscience Center, University of Copenhagen, Universitetsparken 5, Copenhagen, 2100, Denmark. .,Novo Nordisk Foundation Centre for Protein Research, University of Copenhagen, Blegdamsvej 3B, 2200, Copenhagen, Denmark.
| | - Jørgen Kjems
- Interdisciplinary Nanoscience Center, Aarhus University, Aarhus C, 8000, Denmark. .,Department of Molecular Biology and Genetics, Aarhus University, Aarhus C, 8000, Denmark.
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37
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DNA Nanotechnology for Building Sensors, Nanopores and Ion-Channels. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2019; 1174:331-370. [PMID: 31713205 DOI: 10.1007/978-981-13-9791-2_11] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
DNA nanotechnology has revolutionised the capabilities to shape and control three-dimensional structures at the nanometre scale. Designer sensors, nanopores and ion-channels built from DNA have great potential for both cross-disciplinary research and applications. Here, we introduce the concept of structural DNA nanotechnology, including DNA origami, and give an overview of the work flow from design to assembly, characterisation and application of DNA-based functional systems. Chemical functionalisation of DNA has opened up pathways to transform static DNA structures into dynamic nanomechanical sensors. We further introduce nanopore sensing as a powerful label-free single-molecule technique and discuss how it can benefit from DNA nanotechnology. Especially exciting is the possibility to create membrane-inserted DNA nanochannels that mimic their protein-based natural counterparts in form and function. In this chapter we review the status quo of DNA sensors, nanopores and ion channels, highlighting opportunities and challenges for their future development.
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38
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Wang W, Yu S, Huang S, Bi S, Han H, Zhang JR, Lu Y, Zhu JJ. Bioapplications of DNA nanotechnology at the solid-liquid interface. Chem Soc Rev 2019; 48:4892-4920. [PMID: 31402369 PMCID: PMC6746594 DOI: 10.1039/c8cs00402a] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
DNA nanotechnology engineered at the solid-liquid interface has advanced our fundamental understanding of DNA hybridization kinetics and facilitated the design of improved biosensing, bioimaging and therapeutic platforms. Three research branches of DNA nanotechnology exist: (i) structural DNA nanotechnology for the construction of various nanoscale patterns; (ii) dynamic DNA nanotechnology for the operation of nanodevices; and (iii) functional DNA nanotechnology for the exploration of new DNA functions. Although the initial stages of DNA nanotechnology research began in aqueous solution, current research efforts have shifted to solid-liquid interfaces. Based on shape and component features, these interfaces can be classified as flat interfaces, nanoparticle interfaces, and soft interfaces of DNA origami and cell membranes. This review briefly discusses the development of DNA nanotechnology. We then highlight the important roles of structural DNA nanotechnology in tailoring the properties of flat interfaces and modifications of nanoparticle interfaces, and extensively review their successful bioapplications. In addition, engineering advances in DNA nanodevices at interfaces for improved biosensing both in vitro and in vivo are presented. The use of DNA nanotechnology as a tool to engineer cell membranes to reveal protein levels and cell behavior is also discussed. Finally, we present challenges and an outlook for this emerging field.
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Affiliation(s)
- Wenjing Wang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry & Chemical Engineering, Nanjing University, Nanjing 210023, China.
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39
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Guo S, Pan R, Guan Z, Li P, Cai L, Chen S, Lin A, Yao H. Synthesis of Indole-Fused Polycyclics via Rhodium-Catalyzed Undirected C-H Activation/Alkene Insertion. Org Lett 2019; 21:6320-6324. [PMID: 31386379 DOI: 10.1021/acs.orglett.9b02198] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
A Rh(III)-catalyzed undirected C-H activation/alkene insertion to synthesize diversified indole-fused polycyclics has been developed. Intramolecular electrophilic cyclization generated a 3-indolyl rhodium species that went through an aryl-to-aryl 1,4-rhodium migration to realize the C-H activation. The subsequent [4 + 2] carboannulation or hydroarylation of alkenes could be achieved, respectively, by simply adjusting the additives of the reaction.
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Affiliation(s)
- Songjin Guo
- Department of Medicinal Chemistry, School of Pharmacy and State Key Laboratory of Natural Medicines (SKLNM) , China Pharmaceutical University , Nanjing 210009 , P.R. China
| | - Rui Pan
- Department of Medicinal Chemistry, School of Pharmacy and State Key Laboratory of Natural Medicines (SKLNM) , China Pharmaceutical University , Nanjing 210009 , P.R. China
| | - Zhe Guan
- Department of Medicinal Chemistry, School of Pharmacy and State Key Laboratory of Natural Medicines (SKLNM) , China Pharmaceutical University , Nanjing 210009 , P.R. China
| | - Panpan Li
- Department of Medicinal Chemistry, School of Pharmacy and State Key Laboratory of Natural Medicines (SKLNM) , China Pharmaceutical University , Nanjing 210009 , P.R. China
| | - Libo Cai
- Department of Medicinal Chemistry, School of Pharmacy and State Key Laboratory of Natural Medicines (SKLNM) , China Pharmaceutical University , Nanjing 210009 , P.R. China
| | - Siwei Chen
- Department of Medicinal Chemistry, School of Pharmacy and State Key Laboratory of Natural Medicines (SKLNM) , China Pharmaceutical University , Nanjing 210009 , P.R. China
| | - Aijun Lin
- Department of Medicinal Chemistry, School of Pharmacy and State Key Laboratory of Natural Medicines (SKLNM) , China Pharmaceutical University , Nanjing 210009 , P.R. China
| | - Hequan Yao
- Department of Medicinal Chemistry, School of Pharmacy and State Key Laboratory of Natural Medicines (SKLNM) , China Pharmaceutical University , Nanjing 210009 , P.R. China
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40
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Affiliation(s)
- Abdur Rahim
- Department of Chemistry, Center for Excellence in Molecular Synthesis, and Hefei National Laboratory for Physical Sciences at the MicroscaleUniversity of Science and Technology of China, 96 Jinzhai Road Hefei Anhui 230026 China
| | - Jia Feng
- Department of Chemistry, Center for Excellence in Molecular Synthesis, and Hefei National Laboratory for Physical Sciences at the MicroscaleUniversity of Science and Technology of China, 96 Jinzhai Road Hefei Anhui 230026 China
| | - Zhenhua Gu
- Department of Chemistry, Center for Excellence in Molecular Synthesis, and Hefei National Laboratory for Physical Sciences at the MicroscaleUniversity of Science and Technology of China, 96 Jinzhai Road Hefei Anhui 230026 China
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41
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Cai H, Thombal RS, Li X, Lee YR. Rhodium(III)‐Catalyzed Regioselective C−H Activation/Annulation for the Diverse Pyrazole‐Core Substituted Furans. Adv Synth Catal 2019. [DOI: 10.1002/adsc.201900498] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Hongyun Cai
- School of Chemical Engineering Yeungnam University Gyeongsan 38541 Republic of Korea
| | - Raju S. Thombal
- School of Chemical Engineering Yeungnam University Gyeongsan 38541 Republic of Korea
| | - Xin Li
- College of Biotechnology and Pharmaceutical Engineering Nanjing Tech University 30 Puzhu Rd S. Nanjing 211816 China
| | - Yong Rok Lee
- School of Chemical Engineering Yeungnam University Gyeongsan 38541 Republic of Korea
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42
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Li H, Liu Q, Crielaard BJ, de Vries JW, Loznik M, Meng Z, Yang X, Göstl R, Herrmann A. Fast, Efficient, and Targeted Liposome Delivery Mediated by DNA Hybridization. Adv Healthc Mater 2019; 8:e1900389. [PMID: 31081288 DOI: 10.1002/adhm.201900389] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2019] [Revised: 04/26/2019] [Indexed: 12/22/2022]
Abstract
Safety and efficacy, two significant parameters in drug administration, can be improved by site-specific delivery approaches. Here a fast, efficient, and targeted liposome delivery system steered by a DNA hybridization recognition mechanism is presented. For this purpose, lipid-terminated DNA is inserted in both liposome and cell membranes by simple mixing of the components. Cellular accumulation of cargo encapsulated in the liposomal core is substantially enhanced when the DNA sequence on the cell is complementary to that on the liposome. Additionally, in mixed cell populations, liposomes discriminate targets by their complementary DNA sequences. Exposure of cells to low temperature and endocytosis inhibitors suggests a caveolae-dependent endocytosis uptake pathway. Mechanistically, hybridization between DNA strands spatially traps liposomes and cell membranes in close proximity, consequently increases the local liposome concentration, and thereby enhances cellular uptake of liposomes and their payload. This programmable delivery system might contribute to new applications in molecular biology and drug delivery.
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Affiliation(s)
- Hongyan Li
- Zernike Institute for Advanced MaterialsUniversity of Groningen Nijenborgh 4 9747 AG Groningen The Netherlands
- DWI – Leibniz Institute for Interactive Materials Forckenbeckstr. 50 52056 Aachen Germany
| | - Qing Liu
- Zernike Institute for Advanced MaterialsUniversity of Groningen Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Bart J. Crielaard
- Zernike Institute for Advanced MaterialsUniversity of Groningen Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Jan W. de Vries
- Zernike Institute for Advanced MaterialsUniversity of Groningen Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Mark Loznik
- DWI – Leibniz Institute for Interactive Materials Forckenbeckstr. 50 52056 Aachen Germany
- Institute of Technical and Macromolecular ChemistryRWTH Aachen University Worringerweg 2 52074 Aachen Germany
| | - Zhuojun Meng
- Zernike Institute for Advanced MaterialsUniversity of Groningen Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Xintong Yang
- Zernike Institute for Advanced MaterialsUniversity of Groningen Nijenborgh 4 9747 AG Groningen The Netherlands
- DWI – Leibniz Institute for Interactive Materials Forckenbeckstr. 50 52056 Aachen Germany
| | - Robert Göstl
- DWI – Leibniz Institute for Interactive Materials Forckenbeckstr. 50 52056 Aachen Germany
| | - Andreas Herrmann
- Zernike Institute for Advanced MaterialsUniversity of Groningen Nijenborgh 4 9747 AG Groningen The Netherlands
- DWI – Leibniz Institute for Interactive Materials Forckenbeckstr. 50 52056 Aachen Germany
- Institute of Technical and Macromolecular ChemistryRWTH Aachen University Worringerweg 2 52074 Aachen Germany
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43
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Liu N, Yao J, Yin L, Lu T, Tian Z, Dou X. Rhodium-Catalyzed Expeditious Synthesis of Indenes from Propargyl Alcohols and Organoboronic Acids by Selective 1,4-Rhodium Migration over β-Oxygen Elimination. ACS Catal 2019. [DOI: 10.1021/acscatal.9b02024] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Na Liu
- Department of Chemistry and State Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing 211198, China
| | - Jian Yao
- Department of Chemistry and State Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing 211198, China
| | - Long Yin
- Department of Chemistry and State Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing 211198, China
| | - Tao Lu
- Department of Chemistry and State Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing 211198, China
| | - Ziqi Tian
- Ningbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences, Ningbo 315201, China
| | - Xiaowei Dou
- Department of Chemistry and State Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing 211198, China
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44
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Bagheri Y, Shafiei F, Chedid S, Zhao B, You M. Lipid-DNA conjugates for cell membrane modification, analysis, and regulation. Supramol Chem 2019. [DOI: 10.1080/10610278.2019.1632454] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Yousef Bagheri
- Department of Chemistry, University of Massachusetts, Amherst, MA, USA
| | - Fatemeh Shafiei
- Department of Chemistry, University of Massachusetts, Amherst, MA, USA
| | - Sara Chedid
- Department of Chemistry, University of Massachusetts, Amherst, MA, USA
| | - Bin Zhao
- Department of Chemistry, University of Massachusetts, Amherst, MA, USA
| | - Mingxu You
- Department of Chemistry, University of Massachusetts, Amherst, MA, USA
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45
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Kimura N, Kochi T, Kakiuchi F. Iron‐Catalyzed
Ortho
‐Selective C−H Alkylation of Aromatic Ketones with
N
‐Alkenylindoles and Partial Indolylation via 1,4‐Iron Migration. ASIAN J ORG CHEM 2019. [DOI: 10.1002/ajoc.201900209] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Naoki Kimura
- Department of ChemistryFaculty of Science and TechnologyKeio University 3-14-1 Hiyoshi, Kohoku-ku Yokohama 223-8522 Japan
| | - Takuya Kochi
- Department of ChemistryFaculty of Science and TechnologyKeio University 3-14-1 Hiyoshi, Kohoku-ku Yokohama 223-8522 Japan
| | - Fumitoshi Kakiuchi
- Department of ChemistryFaculty of Science and TechnologyKeio University 3-14-1 Hiyoshi, Kohoku-ku Yokohama 223-8522 Japan
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46
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Huo S, Li H, Boersma AJ, Herrmann A. DNA Nanotechnology Enters Cell Membranes. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2019; 6:1900043. [PMID: 31131200 PMCID: PMC6523375 DOI: 10.1002/advs.201900043] [Citation(s) in RCA: 74] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Revised: 02/16/2019] [Indexed: 05/19/2023]
Abstract
DNA is more than a carrier of genetic information: It is a highly versatile structural motif for the assembly of nanostructures, giving rise to a wide range of functionalities. In this regard, the structure programmability is the main advantage of DNA over peptides, proteins, and small molecules. DNA amphiphiles, in which DNA is covalently bound to synthetic hydrophobic moieties, allow interactions of DNA nanostructures with artificial lipid bilayers and cell membranes. These structures have seen rapid growth with great potential for medical applications. In this Review, the current state of the art of the synthesis of DNA amphiphiles and their assembly into nanostructures are first summarized. Next, an overview on the interaction of these DNA amphiphiles with membranes is provided, detailing on the driving forces and the stability of the interaction. Moreover, the interaction with cell surfaces in respect to therapeutics, biological sensing, and cell membrane engineering is highlighted. Finally, the challenges and an outlook on this promising class of DNA hybrid materials are discussed.
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Affiliation(s)
- Shuaidong Huo
- DWI‐Leibniz Institute for Interactive MaterialsForckenbeckstr. 5052056AachenGermany
- Zernike Institute for Advanced MaterialsUniversity of GroningenNijenborgh 49747AG GroningenThe Netherlands
- Institute of Technical and Macromolecular ChemistryRWTH Aachen UniversityWorringerweg 252074AachenGermany
| | - Hongyan Li
- DWI‐Leibniz Institute for Interactive MaterialsForckenbeckstr. 5052056AachenGermany
- Zernike Institute for Advanced MaterialsUniversity of GroningenNijenborgh 49747AG GroningenThe Netherlands
| | - Arnold J. Boersma
- DWI‐Leibniz Institute for Interactive MaterialsForckenbeckstr. 5052056AachenGermany
| | - Andreas Herrmann
- DWI‐Leibniz Institute for Interactive MaterialsForckenbeckstr. 5052056AachenGermany
- Zernike Institute for Advanced MaterialsUniversity of GroningenNijenborgh 49747AG GroningenThe Netherlands
- Institute of Technical and Macromolecular ChemistryRWTH Aachen UniversityWorringerweg 252074AachenGermany
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47
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Murai M, Yamamoto M, Takai K. Rhenium-Catalyzed Regioselective ortho-Alkenylation and [3 + 2 + 1] Cycloaddition of Phenols with Internal Alkynes. Org Lett 2019; 21:3441-3445. [PMID: 30998367 DOI: 10.1021/acs.orglett.9b01214] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
An operationally simple and direct rhenium-catalyzed ortho-alkenylation ( C-alkenylation) of unprotected phenols with alkynes was developed. The protocol provided ortho-alkenylphenols exclusively, and formation of para- or multiply alkenylated phenols and hydrophenoxylation ( O-alkenylation) products were not observed. The [3 + 2 + 1] cycloaddition of phenols and two alkynes via ortho-alkenylation was also demonstrated, in which the alkynes functioned as both two- and one-carbon units. These reactions proceeded with readily available starting materials under neutral conditions without additional ligands.
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Affiliation(s)
- Masahito Murai
- Division of Applied Chemistry, Graduate School of Natural Science and Technology , Okayama University , 3-1-1 Tsushimanaka, Kita-ku , Okayama 700-8530 , Japan
| | - Masaki Yamamoto
- Division of Applied Chemistry, Graduate School of Natural Science and Technology , Okayama University , 3-1-1 Tsushimanaka, Kita-ku , Okayama 700-8530 , Japan
| | - Kazuhiko Takai
- Division of Applied Chemistry, Graduate School of Natural Science and Technology , Okayama University , 3-1-1 Tsushimanaka, Kita-ku , Okayama 700-8530 , Japan
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Mathur D, Medintz IL. The Growing Development of DNA Nanostructures for Potential Healthcare-Related Applications. Adv Healthc Mater 2019; 8:e1801546. [PMID: 30843670 PMCID: PMC9285959 DOI: 10.1002/adhm.201801546] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2018] [Revised: 01/17/2019] [Indexed: 12/21/2022]
Abstract
DNA self-assembly has proven to be a highly versatile tool for engineering complex and dynamic biocompatible nanostructures from the bottom up with a wide range of potential bioapplications currently being pursued. Primary among these is healthcare, with the goal of developing diagnostic, imaging, and drug delivery devices along with combinatorial theranostic devices. The path to understanding a role for DNA nanotechnology in biomedical sciences is being approached carefully and systematically, starting from analyzing the stability and immune-stimulatory properties of DNA nanostructures in physiological conditions, to estimating their accessibility and application inside cellular and model animal systems. Much remains to be uncovered but the field continues to show promising results toward developing useful biomedical devices. This review discusses some aspects of DNA nanotechnology that makes it a favorable ingredient for creating nanoscale research and biomedical devices and looks at experiments undertaken to determine its stability in vivo. This is presented in conjugation with examples of state-of-the-art developments in biomolecular sensing, imaging, and drug delivery. Finally, some of the major challenges that warrant the attention of the scientific community are highlighted, in order to advance the field into clinically relevant applications.
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Affiliation(s)
- Divita Mathur
- Center for Bio/Molecular Science and EngineeringU.S. Naval Research Laboratory Code 6910WashingtonDC20375USA
- College of ScienceGeorge Mason UniversityFairfaxVA22030USA
| | - Igor L. Medintz
- Center for Bio/Molecular Science and EngineeringU.S. Naval Research Laboratory Code 6907WashingtonDC20375USA
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Bai D, Xia J, Song F, Li X, Liu B, Liu L, Zheng G, Yang X, Sun J, Li X. Rhodium(iii)-catalyzed diverse [4 + 1] annulation of arenes with 1,3-enynes via sp 3/sp 2 C-H activation and 1,4-rhodium migration. Chem Sci 2019; 10:3987-3993. [PMID: 31015939 PMCID: PMC6457175 DOI: 10.1039/c9sc00545e] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 02/21/2019] [Indexed: 01/24/2023] Open
Abstract
Nitrogen-rich heterocyclic compounds have a profound impact on human health. Despite the numerous synthetic methods, diversified, step-economic, and general synthesis of heterocycles remains limited. C-H bond functionalization catalyzed by rhodium(iii) cyclopentadienyls has proven to be a powerful strategy in the synthesis of diversified heterocycles. Herein we describe rhodium(iii)-catalyzed sp2 and sp3 C-H activation-oxidative annulations between aromatic substrates and 1,3-enynes, where alkenyl-to-allyl 1,4-rhodium(iii) migration enabled the generation of electrophilic rhodium(iii) π-allyls via remote C-H functionalization. Subsequent nucleophilic trapping of these species by various sp2-hybridized N-nucleophiles delivered three classes (external salts, inner salts, and neutral azacycles) of five-membered azacycles bearing a tetrasubstituted saturated carbon center, as a result of [4 + 1] annulation with the alkyne being a one-carbon synthon. All the reactions proceeded under relatively mild conditions with broad substrate scope, high efficiency, and excellent regioselectivity. The synthetic applications of this protocol have also been demonstrated, and experimental studies have been performed to support the proposed mechanism.
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Affiliation(s)
- Dachang Bai
- Henan Key Laboratory of Organic Functional Molecule and Drug Innovation , School of Chemistry and Chemical Engineering , Henan Normal University , Xinxiang 453007 , China
| | - Jintao Xia
- Dalian Institute of Chemical Physics , Chinese Academy of Sciences , Dalian 116023 , China .
- University of Chinese Academy of Sciences , Beijing 100049 , China
| | - Fangfang Song
- Henan Key Laboratory of Organic Functional Molecule and Drug Innovation , School of Chemistry and Chemical Engineering , Henan Normal University , Xinxiang 453007 , China
| | - Xueyan Li
- Henan Key Laboratory of Organic Functional Molecule and Drug Innovation , School of Chemistry and Chemical Engineering , Henan Normal University , Xinxiang 453007 , China
| | - Bingxian Liu
- Henan Key Laboratory of Organic Functional Molecule and Drug Innovation , School of Chemistry and Chemical Engineering , Henan Normal University , Xinxiang 453007 , China
| | - Lihong Liu
- Henan Key Laboratory of Organic Functional Molecule and Drug Innovation , School of Chemistry and Chemical Engineering , Henan Normal University , Xinxiang 453007 , China
| | - Guangfan Zheng
- School of Chemistry and Chemical Engineering , Shaanxi Normal University (SNNU) , Xi'an 710062 , China .
| | - Xifa Yang
- Dalian Institute of Chemical Physics , Chinese Academy of Sciences , Dalian 116023 , China .
| | - Jiaqiong Sun
- School of Chemistry and Chemical Engineering , Shaanxi Normal University (SNNU) , Xi'an 710062 , China .
| | - Xingwei Li
- Henan Key Laboratory of Organic Functional Molecule and Drug Innovation , School of Chemistry and Chemical Engineering , Henan Normal University , Xinxiang 453007 , China
- Dalian Institute of Chemical Physics , Chinese Academy of Sciences , Dalian 116023 , China .
- School of Chemistry and Chemical Engineering , Shaanxi Normal University (SNNU) , Xi'an 710062 , China .
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