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Voigt J, Baljozović M, Martin K, Wäckerlin C, Avarvari N, Ernst KH. An aperiodic chiral tiling by topological molecular self-assembly. Nat Commun 2025; 16:83. [PMID: 39747821 PMCID: PMC11696205 DOI: 10.1038/s41467-024-55405-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2024] [Accepted: 12/11/2024] [Indexed: 01/04/2025] Open
Abstract
Studying the self-assembly of chiral molecules in two dimensions offers insights into the fundamentals of crystallization. Using scanning tunneling microscopy, we examine an uncommon aggregation of polyaromatic chiral molecules on a silver surface. Dense packing is achieved through a chiral triangular tiling of triads, with N and N ± 1 molecules at the edges. The triangles feature a random distribution of mirror-isomers, with a significant excess of one isomer. Chirality at the domain boundaries causes a lateral shift, producing three distinct topological defects where six triangles converge. These defects partially contribute to the formation of supramolecular spirals. The observation of different equal-density arrangements suggests that entropy maximization must play a crucial role. Despite the potential for regular patterns, all observed tiling is aperiodic. Differences from previously reported aperiodic molecular assemblies, such as Penrose tiling, are discussed. Our findings demonstrate that two-dimensional molecular self-assembly can be governed by topological constraints, leading to aperiodic tiling induced by intermolecular forces.
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Affiliation(s)
- Jan Voigt
- Empa, Swiss Federal Laboratories for Materials Science and Technology, Dübendorf, Switzerland
| | - Miloš Baljozović
- Empa, Swiss Federal Laboratories for Materials Science and Technology, Dübendorf, Switzerland
| | - Kévin Martin
- Univ Angers, CNRS, MOLTECH-Anjou, SFR MATRIX, F-49000, Angers, France
| | - Christian Wäckerlin
- Laboratory for X-ray Nanoscience and Technologies, Paul-Scherrer-Institut (PSI), CH-5232, Villigen PSI, Switzerland
- Institute of Physics, Swiss Federal Institute of Technology Lausanne (EPFL) Station 3, CH-1015, Lausanne, Switzerland
| | - Narcis Avarvari
- Univ Angers, CNRS, MOLTECH-Anjou, SFR MATRIX, F-49000, Angers, France.
| | - Karl-Heinz Ernst
- Empa, Swiss Federal Laboratories for Materials Science and Technology, Dübendorf, Switzerland.
- Nanosurf Lab, Institute of Physics of the Czech Academy of Sciences, Prague, Czech Republic.
- Department of Chemistry, University of Zürich, Zürich, Switzerland.
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2
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Maeda M, Sato K, De Feyter S, Tahara K. Homochiral hierarchical molecular assemblies through dynamic combination of conformational states of a single chiral building block at the liquid/solid interface. NANOSCALE 2023. [PMID: 37997169 DOI: 10.1039/d3nr04042a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2023]
Abstract
We herein report the construction of homochiral, hierarchical self-assembled molecular networks (SAMNs) at the liquid/graphite interface using a single molecular building block, a chiral dehydrobenzo[12]annulene (cDBA) derivative with three chiral alkoxy and three hydroxy groups positioned in an alternating manner on the DBA core. The cDBA molecules form homochiral hierarchical SAMNs consisting of triangular clusters of several sizes, the size of which can be tuned by solvent polarity and solute concentration, reaching periodicities as large as 9.3 nm. We demonstrate the successful transmission of chirality information from the single molecular level to the hierarchical SAMN level, in a process that is mediated by dynamic self-sorting.
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Affiliation(s)
- Matsuhiro Maeda
- Department of Applied Chemistry, School of Science and Technology, Meiji University, 1-1-1 Higashimita, Tama-ku, Kawasaki, Kanagawa, 214-8571, Japan.
| | - Kazuya Sato
- Department of Applied Chemistry, School of Science and Technology, Meiji University, 1-1-1 Higashimita, Tama-ku, Kawasaki, Kanagawa, 214-8571, Japan.
| | - Steven De Feyter
- Division of Molecular Imaging and Photonics, Department of Chemistry, KU Leuven, Celestijnenlaan 200 F, 3001 Leuven, Belgium
| | - Kazukuni Tahara
- Department of Applied Chemistry, School of Science and Technology, Meiji University, 1-1-1 Higashimita, Tama-ku, Kawasaki, Kanagawa, 214-8571, Japan.
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3
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Toksabay S, Leisegang M, Christ A, Härtl P, Krebs J, Marder TB, Haldar S, Heinze S, Bode M, Krueger A. Controlled Formation of Porous 2D Lattices from C 3 -symmetric Ph 6 -Me-Tribenzotriquinacene-OAc 3. Chemistry 2023; 29:e202203187. [PMID: 36346617 DOI: 10.1002/chem.202203187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 11/04/2022] [Accepted: 11/07/2022] [Indexed: 11/09/2022]
Abstract
The on-surface self-assembly of molecules to form holey nanographenes is a promising approach to control the properties of the resulting 2D lattice. Usually, planar molecules are utilized to prepare flat, structurally confined molecular layers, with only a few recent examples of warped precursors. However, control of the superstructures is limited thus far. Herein, we report the temperature-controlled self-assembly of a bowl-shaped, acetylated C3 -symmetric hexaphenyltribenzotriquinacene derivative on Cu(111). Combining scanning tunneling microscopy (STM) and density functional theory (DFT) confirms the formation of highly differing arrangements starting with π-stacked bowl-to-bowl dimers at low coverage at room temperature via chiral honeycomb structures, an intermediate trigonal superstructure, followed by a fully carbon-based, flattened hexagonal superstructure formed by on-surface deacetylation, which is proposed as a precursor for holey graphene networks with unique defect structures.
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Affiliation(s)
- Sinem Toksabay
- Institute for Organic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Markus Leisegang
- Physikalisches Institut Experimentelle Physik II, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Andreas Christ
- Physikalisches Institut Experimentelle Physik II, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Patrick Härtl
- Physikalisches Institut Experimentelle Physik II, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Johannes Krebs
- Institute for Inorganic Chemistry and Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Todd B Marder
- Institute for Inorganic Chemistry and Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Soumyajyoti Haldar
- Institute of Theoretical Physics and Astrophysics, University of Kiel, Leibnizstrasse 15, 24098, Kiel, Germany
| | - Stefan Heinze
- Institute of Theoretical Physics and Astrophysics, University of Kiel, Leibnizstrasse 15, 24098, Kiel, Germany
| | - Matthias Bode
- Physikalisches Institut Experimentelle Physik II, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany.,Wilhelm Conrad Röntgen-Center for Complex Material Systems (RCCM), Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Anke Krueger
- Institute for Organic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany.,Institute of Organic Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569, Stuttgart, Germany
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4
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Li Y, Strand D, Grimme S, Jónsson S, Wärnmark K. The long-awaited synthesis and self-assembly of a small rigid C3-symmetric trilactam. Chem Commun (Camb) 2022; 58:3751-3754. [PMID: 35229097 DOI: 10.1039/d2cc00345g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
The challenging synthesis of a fused C3-symmetric trilactam (1) was executed in racemic and enantiomerically pure form. The rigidity, symmetry and high density of hydrogen bonding motifs make 1 an attractive candidate for self-assembly study, which revealed different hydrogen bond patterns in the crystals of rac-1-d3 and (+)-(SSS)-1.
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Affiliation(s)
- Yutang Li
- Centre for Analysis and Synthesis, Department of Chemistry, Lund University, SE-221 00 Lund, Sweden.
| | - Daniel Strand
- Centre for Analysis and Synthesis, Department of Chemistry, Lund University, SE-221 00 Lund, Sweden.
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität Bonn, 53115 Bonn, Germany
| | - Stefán Jónsson
- Centre for Analysis and Synthesis, Department of Chemistry, Lund University, SE-221 00 Lund, Sweden.
| | - Kenneth Wärnmark
- Centre for Analysis and Synthesis, Department of Chemistry, Lund University, SE-221 00 Lund, Sweden.
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5
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Trandafir A, Pantoş GD, Ilie A. Borazatruxenes as precursors for hybrid C-BN 2D molecular networks. NANOSCALE 2022; 14:1929-1943. [PMID: 35048940 DOI: 10.1039/d1nr07194g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Synthesizing atomically thin, crystalline two-dimensional (2D) molecular materials which combine carbon with other elements is an emerging field requiring both custom-designed molecular precursors and their ability to organize into networks (hydrogen-bonded or covalent). Hybrid carbon-boron nitride (C-BN) networks face the additional challenge of needing hydrolytically-stable BN-containing molecular precursors. Here, we show that borazatruxenes (truxene-like molecules with a borazine core) and their halogenated derivatives are highly stable precursors suitable for on-surface assembly. Using scanning tunneling microscopy (STM) and density functional theory (DFT) simulations we demonstrate hierarchical H-bonded assembly based on chiral homodimers of tribromo-borazatruxenes (3Br-borazatruxenes) as building blocks for both 1D chains and 2D networks. A low-symmetry, H-bonded chiral 2D lattice forms on Au(111) from the C3-symmetric 3Br-borazatruxenes, leading to large enantiomorphic domains that are molecularly homochiral. Such homochiral segregation is a necessary condition if chiral C-BN covalent networks are to be obtained via subsequent on-surface reactions. We show via DFT that up to two Na atoms can be trapped within the small pores of this dense lattice, while further Na atoms can adsorb on preferred network sites; this leads to hybrid Na-molecular network electronic bands with anisotropic dispersion and significant (up to hundreds of meV) bandwidths, as well as significant doping, that can engender anisotropic transport through the network. Finally, electronic structure comparisons (combining both experiment and computation) between borazatruxene, its tri-brominated derivative and truxene show that the borazine core controls the band gap increase, while also inducing C-B pz-pz electron delocalization that facilitates a continuous electron path across the molecule. Furthermore, as shown by DFT, the borazine core drives inter-layer B-N polar interactions that promote adsorption of BN containing molecules in a staggered configuration, a mechanism to be exploited in layer-by-layer supra-molecular assembly of novel hybrid C-BN materials.
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Affiliation(s)
- Anamaria Trandafir
- Department of Physics, University of Bath, Bath, UK.
- Department of Chemistry, University of Bath, Bath, UK
- Centre for Graphene Science, University of Bath, Bath, UK
- Centre for Nanoscience and Nanotechnology, University of Bath, Bath, UK
| | - G Dan Pantoş
- Department of Chemistry, University of Bath, Bath, UK
- Centre for Graphene Science, University of Bath, Bath, UK
| | - Adelina Ilie
- Department of Physics, University of Bath, Bath, UK.
- Centre for Graphene Science, University of Bath, Bath, UK
- Centre for Nanoscience and Nanotechnology, University of Bath, Bath, UK
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6
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Kalashnyk N, Clair S. Self-Accommodating Honeycomb Networks from Supramolecular Self-Assembly of s-Indacene-tetrone on Silver Surfaces. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:1067-1071. [PMID: 35015546 DOI: 10.1021/acs.langmuir.1c02640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
We describe the self-assembly of s-indacene-tetrone on Ag(111), Ag(100), and Ag(110) surfaces and the formation of three hydrogen-bonded supramolecular phases representing a complex self-accommodating honeycomb network. The differences in terms of relative host-guest stability and molecular density are analyzed and discussed. Different epitaxial behaviors of the two-dimensional self-assembly are found as a response to the variations in the crystallographic orientation of the surface.
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Affiliation(s)
| | - Sylvain Clair
- Aix Marseille Univ, CNRS, IM2NP, F-13397 Marseille, France
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7
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Hamer S, von Glasenapp J, Röhricht F, Li C, Berndt R, Herges R. Azimuthal Dipolar Rotor Arrays on Surfaces. Chemistry 2021; 27:17452-17458. [PMID: 34664752 PMCID: PMC9298050 DOI: 10.1002/chem.202103237] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Indexed: 11/18/2022]
Abstract
A set of dipolar molecular rotor compounds was designed, synthesized and adsorbed as self-assembled 2D arrays on Ag(111) surfaces. The title molecules are constructed from three building blocks: (a) 4,8,12-trioxatriangulene (TOTA) platforms that are known to physisorb on metal surfaces such as Au(111) and Ag(111), (b) phenyl groups attached to the central carbon atom that function as pivot joints to reduce the barrier to rotation, (c) pyridine and pyridazine units as small dipolar units on top. Theoretical calculations and scanning tunneling microscopy (STM) investigations hint at the fact that the dipoles of neighboring rotors interact through space through pairs of energetically favorable head-to-tail arrangements.
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Affiliation(s)
- Sebastian Hamer
- Otto-Diels-Institut für Organische ChemieKiel UniversityOtto-Hahn-Platz 424098KielGermany
| | | | - Fynn Röhricht
- Otto-Diels-Institut für Organische ChemieKiel UniversityOtto-Hahn-Platz 424098KielGermany
| | - Chao Li
- Institut für Experimentelle und Angewandte PhysikKiel UniversityLeibnizstrasse 1924098KielGermany
| | - Richard Berndt
- Institut für Experimentelle und Angewandte PhysikKiel UniversityLeibnizstrasse 1924098KielGermany
| | - Rainer Herges
- Otto-Diels-Institut für Organische ChemieKiel UniversityOtto-Hahn-Platz 424098KielGermany
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8
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Maeda M, Nakayama R, De Feyter S, Tobe Y, Tahara K. Hierarchical two-dimensional molecular assembly through dynamic combination of conformational states at the liquid/solid interface. Chem Sci 2020; 11:9254-9261. [PMID: 34094197 PMCID: PMC8162029 DOI: 10.1039/d0sc03163a] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Self-sorting of multiple building blocks for correctly positioning molecules through orthogonal recognition is a promising strategy for construction of a hierarchical self-assembled molecular network (SAMN) on a surface. Herein we report that a trigonal molecule, dehydrobenzo[12]annulene (DBA) derivative having three tetradecyloxy chains and three hydroxy groups in an alternating manner, forms hierarchical triangular clusters of different sizes ranging from 2.4 to 16.4 nm, consisting of 3 to 78 molecules, respectively, at the liquid/graphite interface. The key is the dynamic combination of three different conformational states, which is solvent and concentration dependent. The present knowledge extends design strategies for production of sophisticated hierarchical SAMNs using a single component at the liquid/solid interface. Self-sorting of multiple building blocks for correctly positioning molecules through orthogonal recognition is a promising strategy for construction of a hierarchical self-assembled molecular network (SAMN) on a surface.![]()
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Affiliation(s)
- Matsuhiro Maeda
- Department of Applied Chemistry, School of Science and Technology, Meiji University 1-1-1 Higashimita, Tama-ku Kawasaki 214-8571 Japan
| | - Ruri Nakayama
- Department of Applied Chemistry, School of Science and Technology, Meiji University 1-1-1 Higashimita, Tama-ku Kawasaki 214-8571 Japan
| | - Steven De Feyter
- Division of Molecular Imaging and Photonics, Department of Chemistry, KU Leuven Celestijnenlaan 200 F 3001 Leuven Belgium
| | - Yoshito Tobe
- The Institute of Scientific and Industrial Research, Osaka University Ibaraki Osaka 567-0047 Japan .,Department of Applied Chemistry, National Chiao Tung University 1001 Ta Hsueh Road Hsinchu 30030 Taiwan
| | - Kazukuni Tahara
- Department of Applied Chemistry, School of Science and Technology, Meiji University 1-1-1 Higashimita, Tama-ku Kawasaki 214-8571 Japan
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9
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Jasper-Tönnies T, Gruber M, Ulrich S, Herges R, Berndt R. Coverage-Controlled Superstructures of C 3 -Symmetric Molecules: Honeycomb versus Hexagonal Tiling. Angew Chem Int Ed Engl 2020; 59:7008-7017. [PMID: 32106353 PMCID: PMC7216838 DOI: 10.1002/anie.202001383] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Indexed: 11/06/2022]
Abstract
The competition between honeycomb and hexagonal tiling of molecular units can lead to large honeycomb superstructures on surfaces. Such superstructures exhibit pores that may be used as 2D templates for functional guest molecules. Honeycomb superstructures of molecules that comprise a C3 symmetric platform on Au(111) and Ag(111) surfaces are presented. The superstructures cover nearly mesoscopic areas with unit cells containing up to 3000 molecules, more than an order of magnitude larger than previously reported. The unit cell size may be controlled by the coverage. A fairly general model was developed to describe the energetics of honeycomb superstructures built from C3 symmetric units. Based on three parameters that characterize two competing bonding arrangements, the model is consistent with the present experimental data and also reproduces various published results. The model identifies the relevant driving force, mostly related to geometric aspects, of the pattern formation.
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Affiliation(s)
- Torben Jasper-Tönnies
- Institut für Experimentelle und Angewandte Physik, Christian-Albrechts-Universität, 24098, Kiel, Germany
| | - Manuel Gruber
- Institut für Experimentelle und Angewandte Physik, Christian-Albrechts-Universität, 24098, Kiel, Germany
| | - Sandra Ulrich
- Otto-Diels-Institut für Organische Chemie, Christian-Albrechts-Universität, 24098, Kiel, Germany
| | - Rainer Herges
- Otto-Diels-Institut für Organische Chemie, Christian-Albrechts-Universität, 24098, Kiel, Germany
| | - Richard Berndt
- Institut für Experimentelle und Angewandte Physik, Christian-Albrechts-Universität, 24098, Kiel, Germany
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