1
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Patel K, Marek I. Stereospecific molecular rearrangement via nucleophilic substitution at quaternary stereocentres in acyclic systems. Nat Chem 2025:10.1038/s41557-025-01783-2. [PMID: 40108312 DOI: 10.1038/s41557-025-01783-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2024] [Accepted: 02/19/2025] [Indexed: 03/22/2025]
Abstract
Nucleophilic substitution at tetravalent (sp3) carbon is a fundamental transformation in organic synthesis, essential for creating carbon-carbon and carbon-heteroatom bonds. While the mechanism of the SN2 reaction is well understood, achieving stereochemical control in SN1-type reactions remains extremely challenging due to the complexity of successive carbocation intermediates. Here we present a strategy for preparing complex molecular skeletons via stereospecific SN1 at a quaternary stereocentre in acyclic systems. By leveraging neighbouring group participation, we facilitate the selective formation of a unique cyclopropylcarbinyl cation intermediate that undergoes selective nucleophilic substitution with high diastereoselectivity and complete inversion of configuration at a distant position from the original carbocation via molecular rearrangement. This methodology has been applied to generate homoallylic tertiary fluorides, bromides, chlorides, ethers, thiocyanates and azides, demonstrating its applicability in accessing diverse functional groups with exceptional diastereoselectivities. This transformation opens new avenues for constructing complex molecular architectures through precise stereocontrol of C-C bond cleavage at a quaternary stereocentre in acyclic systems.
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Affiliation(s)
- Kaushalendra Patel
- Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion - Israel Institute of Technology, Haifa, Israel
| | - Ilan Marek
- Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion - Israel Institute of Technology, Haifa, Israel.
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2
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Suresh R, Orbach N, Marek I. Stereoinvertive S N1 Through Neighboring Group Participation. Angew Chem Int Ed Engl 2024; 63:e202407602. [PMID: 38763909 DOI: 10.1002/anie.202407602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 05/16/2024] [Accepted: 05/17/2024] [Indexed: 05/21/2024]
Abstract
Neighboring group participation, the assistance of non-conjugated electrons to a reaction center, is a fundamental phenomenon in chemistry. In the framework of nucleophilic substitution reactions, neighboring group participation is known to cause rate acceleration, first order kinetics (SN1), and retention of configuration. The latter phenomenon is a result of double inversion: the first one when the neighboring group displaces the leaving group, and the second when a nucleophile substitutes the neighboring group. This powerful control of stereoretention has been widely used in organic synthesis for more than a century. However, neighboring group participation may also lead to inversion of configuration, a phenomenon which is often overlooked. Herein, we review this unique mode of stereoinversion, dividing the relevant reactions into three classes with the aim to introduce a fresh perspective on the different modes of stereoinversion via neighboring group participation as well as the factors that control this stereochemical outcome.
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Affiliation(s)
- Rahul Suresh
- Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion - Israel Institute of Technology, Technion City, Haifa, 3200009, Israel
| | - Noam Orbach
- Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion - Israel Institute of Technology, Technion City, Haifa, 3200009, Israel
| | - Ilan Marek
- Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion - Israel Institute of Technology, Technion City, Haifa, 3200009, Israel
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3
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Myronova V, Cahard D, Marek I. Stereoselective Nucleophilic Halogenation at CF 3-Substituted Nonclassical Carbocation. Org Lett 2024; 26:3657-3660. [PMID: 38657180 DOI: 10.1021/acs.orglett.4c01161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
CF3-substituted cyclopropyl carbinol derivatives undergo regioselective and diastereoselective nucleophilic halogenation at the quaternary carbon center to provide acyclic products as a single diastereomer. The selectivity of the substitution is rationalized by the formation of a nonclassical cyclopropylcarbinyl cation intermediate, reacting at the most-substituted carbon center. Tertiary alkyl chlorides, bromides, and fluorides adjacent to a stereogenic C-CF3-motif are diastereomerically pure and can be obtained in few catalytic steps from commercially available alkynes.
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Affiliation(s)
- Veronika Myronova
- The Mallat Family Laboratory of Organic Chemistry, Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis. Technion-Israel Institute of Technology, Haifa 3200009, Israel
- CNRS, UMR 6014 COBRA, Univ Rouen Normandie, INSA Rouen Normandie, Normandie Univ, INC3M FR 3038, F-76000 Rouen, France
| | - Dominique Cahard
- CNRS, UMR 6014 COBRA, Univ Rouen Normandie, INSA Rouen Normandie, Normandie Univ, INC3M FR 3038, F-76000 Rouen, France
| | - Ilan Marek
- The Mallat Family Laboratory of Organic Chemistry, Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis. Technion-Israel Institute of Technology, Haifa 3200009, Israel
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4
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Patel K, Oginetz L, Marek I. Highly Diastereoselective Preparation of Tertiary Alkyl Thiocyanates en Route to Thiols by Stereoinvertive Nucleophilic Substitution at Nonclassical Carbocations. Org Lett 2023; 25:8474-8477. [PMID: 37982581 DOI: 10.1021/acs.orglett.3c03396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2023]
Abstract
An effective InBr3-catalyzed nucleophilic thiocyanation of cyclopropyl alcohols has been developed. The reaction takes place at the quaternary carbon stereocenter of the cyclopropyl carbinol with a complete inversion of configuration, offering a novel pathway for the creation of complex tertiary alkyl thiocyanates with high diastereopurity. These substitution reactions proceed under mild reaction conditions and tolerate several functional groups. Additionally, thiocyanates were converted to thiols using lithium aluminum hydride.
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Affiliation(s)
- Kaushalendra Patel
- Schulich Faculty of Chemistry and Resnick Sustainability Center for Catalysis, Technion - Israel Institute of Technology, Technion City, Haifa 3200009, Israel
| | - Lior Oginetz
- Schulich Faculty of Chemistry and Resnick Sustainability Center for Catalysis, Technion - Israel Institute of Technology, Technion City, Haifa 3200009, Israel
| | - Ilan Marek
- Schulich Faculty of Chemistry and Resnick Sustainability Center for Catalysis, Technion - Israel Institute of Technology, Technion City, Haifa 3200009, Israel
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5
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Gilbert MM, Trenerry MJ, Longley VR, Castro AJ, Berry JF, Weix DJ. Ligand-Metal Cooperation Enables Net Ring-Opening C-C Activation / Difunctionalization of Cyclopropyl Ketones. ACS Catal 2023; 13:11277-11290. [PMID: 39386022 PMCID: PMC11463996 DOI: 10.1021/acscatal.3c02643] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/12/2024]
Abstract
Reactions that cleave C-C bonds and enable functionalization at both carbon sites are powerful strategic tools in synthetic chemistry. Stereodefined cyclopropyl ketones have become readily available and would be an ideal source of 3-carbon fragments, but general approaches to net C-C activation / difunctionalization are unknown. Herein we demonstrate the cross-coupling of cyclopropyl ketones with organozinc reagents and chlorotrimethylsilane to form 1,3-difunctionalized, ring-opened products. A combination of experimental and theoretical studies rule out more established mechanisms and shed light on how cooperation between the redox-active terpyridine (tpy) ligand and the nickel atom enables the C-C bond activation step. The reduced (tpy•-)NiI species activates the C-C bond via a concerted asynchronous ring-opening transition state. The resulting alkylnickel(II) intermediate can then be engaged by aryl-, alkenyl-, and alkylzinc reagents to furnish cross-coupled products. This allows quick access to products that are difficult to make by conjugate addition methods, such as β-allylated and β -benzylated enol ethers. The utility of this approach is demonstrated in the synthesis of a key (±)-taiwaniaquinol B intermediate and the total synthesis of prostaglandin D1.
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Affiliation(s)
- Michael M. Gilbert
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA 53706
| | - Michael J. Trenerry
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA 53706
| | - Victoria R. Longley
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA 53706
| | - Anthony J. Castro
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA 53706
| | - John F. Berry
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA 53706
| | - Daniel J. Weix
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA 53706
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6
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Larmore SP, Champagne PA. Cyclopropylcarbinyl-to-Homoallyl Carbocation Equilibria Influence the Stereospecificity in the Nucleophilic Substitution of Cyclopropylcarbinols. J Org Chem 2023. [PMID: 37141426 DOI: 10.1021/acs.joc.3c00257] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
The synthesis of quaternary homoallylic halides and trichloroacetates from cyclopropylcarbinols, as reported by Marek (J. Am. Chem. Soc. 2020, 142, 5543-5548), is one of the few reported examples of stereospecific nucleophilic substitution involving chiral bridged carbocations. However, for the phenyl-substituted substrates, poor specificity is observed and mixtures of diastereomers are obtained. To understand the nature of the intermediates involved and explain the loss of specificity for certain substrates, we have performed a computational investigation of the reaction mechanism using ωB97X-D optimizations and DLPNO-CCSD(T) energy refinements. Our results indicate that cyclopropylcarbinyl cations are stable intermediates in this reaction, while bicyclobutonium structures are high-energy transition structures that are not involved. Instead, multiple rearrangement pathways of cyclopropylcarbinyl cations were located, including ring openings to homoallylic cations. The activation barriers required to reach such structures are correlated to the nature of the substituents; while direct nucleophilic attack on the chiral cyclopropylcarbinyl cations is kinetically favored for most systems, the rearrangements become competitive with nucleophilic attack for the phenyl-substituted systems, leading to a loss of specificity through rearranged carbocation intermediates. As such, stereospecific reactions of chiral cyclopropylcarbinyl cations depend on the energies required to access their corresponding homoallylic structures, from which selectivity is not guaranteed.
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Affiliation(s)
- Sean P Larmore
- Department of Chemistry and Environmental Science, New Jersey Institute of Technology, Newark, New Jersey 07102, United States
| | - Pier Alexandre Champagne
- Department of Chemistry and Environmental Science, New Jersey Institute of Technology, Newark, New Jersey 07102, United States
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7
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Chen X, Marek I. Highly Diastereoselective Preparation of Tertiary Alkyl Isonitriles by Stereoinvertive Nucleophilic Substitution at a Nonclassical Carbocation. Org Lett 2023; 25:2285-2288. [PMID: 36976777 PMCID: PMC10088034 DOI: 10.1021/acs.orglett.3c00583] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Indexed: 03/29/2023]
Abstract
A highly efficient SnCl4-catalyzed nucleophilic isocyanation of cyclopropyl ethers has been developed. The reaction proceeds at the quaternary carbon stereocenter of the cyclopropane with a complete inversion of configuration, providing a new avenue for the construction of synthetically challenging tertiary alkyl isonitriles with high diastereopurity. The diversity of the incorporated isocyanide group has been demonstrated by the transformation of tertiary alkyl isonitriles into the corresponding tertiary alkyl amines, amides, and cyclic ketoimines.
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Affiliation(s)
- Xu Chen
- Schulich Faculty of Chemistry and Resnick
Sustainability Center for Catalysis, Technion
- Israel Institute of Technology, Technion City, Haifa 3200009, Israel
| | - Ilan Marek
- Schulich Faculty of Chemistry and Resnick
Sustainability Center for Catalysis, Technion
- Israel Institute of Technology, Technion City, Haifa 3200009, Israel
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8
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Ghosh S, Changotra A, Petrone DA, Isomura M, Carreira EM, Sunoj RB. Role of Noncovalent Interactions in Inducing High Enantioselectivity in an Alcohol Reductive Deoxygenation Reaction Involving a Planar Carbocationic Intermediate. J Am Chem Soc 2023; 145:2884-2900. [PMID: 36695526 DOI: 10.1021/jacs.2c10975] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The involvement of planar carbocation intermediates is generally considered undesirable in asymmetric catalysis due to the difficulty in gaining facial control and their intrinsic stability issues. Recently, suitably designed chiral catalyst(s) have enabled a guided approach of nucleophiles to one of the prochiral faces of carbocations affording high enantiocontrol. Herein, we present the vital mechanistic insights from our comprehensive density functional theory (B3LYP-D3) study on a chiral Ir-phosphoramidite-catalyzed asymmetric reductive deoxygenation of racemic tertiary α-substituted allenylic alcohols. The catalytic transformation relies on the synergistic action of a phosphoramidite-modified Ir catalyst and Bi(OTf)3, first leading to the formation of an Ir-π-allenyl carbocation intermediate through a turn-over-determining SN1 ionization, followed by a face-selective hydride transfer from a Hantzsch ester analogue to yield an enantioenriched product. Bi(OTf)3 was found to promote a significant number of ionic interactions as well as noncovalent interactions (NCIs) with the catalyst and the substrates (allenylic alcohol and Hantzsch ester), thus providing access to a lower energy route as compared to the pathways devoid of Bi(OTf)3. In the nucleophilic addition, the chiral induction was found to depend on the number and efficacy of such key NCIs. The curious case of reversal of enantioselectivity, when the α-substituent of the allenyl alcohol is changed from methyl to cyclopropyl, was identified to originate from a change in mechanism from an enantioconvergent pathway (α-methyl) to a dynamic kinetic asymmetric transformation (α-cyclopropyl). These molecular insights could lead to newer strategies to tame tertiary carbocations in enantioselective reactions using suitable combinations of catalysts and additives.
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Affiliation(s)
- Supratim Ghosh
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Avtar Changotra
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - David A Petrone
- Department of Chemistry and Applied Biosciences, Laboratory of Organic Chemistry, ETH Zürich, 8093 Zürich, Switzerland.,Department of Process Research & Development, Merck & Co., Inc., MRL, Rahway, New Jersey 07065, United States
| | - Mayuko Isomura
- Department of Chemistry and Applied Biosciences, Laboratory of Organic Chemistry, ETH Zürich, 8093 Zürich, Switzerland
| | - Erick M Carreira
- Department of Chemistry and Applied Biosciences, Laboratory of Organic Chemistry, ETH Zürich, 8093 Zürich, Switzerland
| | - Raghavan B Sunoj
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
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9
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Chen X, Patel K, Marek I. Stereoselective Construction of Tertiary Homoallyl Alcohols and Ethers by Nucleophilic Substitution at Quaternary Carbon Stereocenters. Angew Chem Int Ed Engl 2023; 62:e202212425. [PMID: 36413111 PMCID: PMC10107121 DOI: 10.1002/anie.202212425] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 11/13/2022] [Accepted: 11/22/2022] [Indexed: 11/24/2022]
Abstract
An efficient method for the stereoselective construction of tertiary C-O bonds via a stereoinvertive nucleophilic substitution at the quaternary carbon stereocenter of cyclopropyl carbinol derivatives using water, alcohols and phenols as nucleophiles has been developed. This substitution reaction proceeds under mild conditions and tolerates several functional groups, providing a new access to the stereoselective formation of highly congested tertiary homoallyl alcohols and ethers.
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Affiliation(s)
- Xu Chen
- Schulich Faculty of ChemistryTechnion – Israel Institute of Technology Technion CityHaifa3200009Israel
| | - Kaushalendra Patel
- Schulich Faculty of ChemistryTechnion – Israel Institute of Technology Technion CityHaifa3200009Israel
| | - Ilan Marek
- Schulich Faculty of ChemistryTechnion – Israel Institute of Technology Technion CityHaifa3200009Israel
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10
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Pavlíčková T, Stöckl Y, Marek I. Synthesis and Functionalization of Tertiary Propargylic Boronic Esters by Alkynyllithium-Mediated 1,2-Metalate Rearrangement of Borylated Cyclopropanes. Org Lett 2022; 24:8901-8906. [PMID: 36446049 PMCID: PMC9791689 DOI: 10.1021/acs.orglett.2c03756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Indexed: 11/30/2022]
Abstract
Implementing the use of alkynyllithium reagents in a stereospecific 1,2-metalate rearrangement-mediated ring opening of polysubstituted cyclopropyl boronic esters provides a variety of tertiary pinacol boranes bearing adjacent tertiary or quaternary carbon stereocenters with high levels of diastereomeric purity. The potential of this strategy was demonstrated through a selection of α- and γ-functionalization of the propargyl boronic esters.
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Affiliation(s)
- Tereza Pavlíčková
- Schulich Faculty of Chemistry, Technion − Israel Institute of Technology, Technion City, Haifa 3200009, Israel
| | - Yannick Stöckl
- Schulich Faculty of Chemistry, Technion − Israel Institute of Technology, Technion City, Haifa 3200009, Israel
| | - Ilan Marek
- Schulich Faculty of Chemistry, Technion − Israel Institute of Technology, Technion City, Haifa 3200009, Israel
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11
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Abstract
The various facets of the chemistry of cyclopropane derivatives, the smallest carbocycle, are amazingly diverse and continue to fascinate theoreticians, synthetic or structural chemists having interest in fundamental physical, medicinal chemistry, and natural product synthesis. The challenges generated by this intriguing cyclic arrangement of only three tetravalent carbons represent a wide area of the chemical spectrum. From fundamental aspects of bonding through the synthesis of highly strained molecules, the understanding of the mode of action in biological systems to the selective cleavage into acyclic substrates makes the chemistry of these small rings fascinating. Therefore, efficient routes to prepare differently polysubstituted cyclopropanes have always been of a primordial importance. In the past decade, we and others have expanded the scope of the carbometalation reaction of cyclopropenes as a broad and general method to the formation of stereodefined cyclopropane derivatives. Although cyclopropenes, with their even higher strain energy, easily undergo addition reactions of organometallic reagents, their carbometalation reactions generate new regio-, diastereo-, and enantioselectivity issues that needed to be addressed. These various stereochemical aspects accompanied our research from its origins to today, and we are proposing in this Account, a didactic overview of the different ways by which cyclopropenes can lead to the formation of polysubstituted cyclopropanes or open-products possessing several stereogenic centers as a single regio- and diastereomer.We initially launched our research campaign on the chemistry of these strained three-membered rings by the regio- and diastereoselective copper-catalyzed carbomagnesiation of enantiomerically enriched cyclopropenyl carbinols. The directing alcohol governed both the regio- and diastereoselectivity of the addition and also served as a good leaving group as it undergoes a selective 1,2-elimination reaction to provide enantioenriched alkylidenecyclopropanes in excellent yields and enantiomeric excesses. Then, we turned our attention to the regio- and stereoselective synthesis of stereodefined tri- and tetrasubstituted cyclopropanes through the diastereoselective addition to sp2- monosubstituted cyclopropenyl ester derivatives. With the aim to further expand this concept to the formation of penta- and hexa-substituted cyclopropanes as single isomer, we had first to design the preparation of the required 1,2-disubstituted cyclopropenes that would control the regioselective addition of the organometallic derivatives. The synthesis of penta- and hexa-substituted cyclopropanes was then reported for the first time as a single regio- and diastereomer. It should be noted that the in situ formed cyclopropyl-metal intermediate is configurationally stable and can be subsequently functionalized with pure retention of the configuration by addition of electrophiles. Then, the enantioselective-catalyzed carbometalation reaction of achiral cyclopropenes allowed the synthesis of several new classes of cyclopropane derivatives in high enantiomeric ratios. Finally, by combining the regio- and diastereoselective carbometalation reaction of a cyclopropene with a subsequent reaction of the resulting cyclopropylmetal species, a selective carbon-carbon bond cleavage was observed to lead to the preparation of acyclic substrates possessing several stereocenters including a quaternary carbon stereogenic center. Our original vision of using strain within an embedded double bond in a three-membered ring has provided new routes to the stereoselective synthesis of polysubstituted cyclopropanes and has been extremely successful, as it represents a current new tool for the synthesis of persubstituted cyclopropanes as a single diastereomer.
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Affiliation(s)
- Yair Cohen
- Schulich Faculty of Chemistry, Technion-Israel Institute of Technology, Technion City, Haifa 32000 Israel
| | - Ilan Marek
- Schulich Faculty of Chemistry, Technion-Israel Institute of Technology, Technion City, Haifa 32000 Israel
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12
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Chen X, Marek I. Stereoinvertive Nucleophilic Substitution at Quaternary Carbon Stereocenters of Cyclopropyl Ketones and Ethers. Angew Chem Int Ed Engl 2022; 61:e202203673. [PMID: 35471589 PMCID: PMC9324837 DOI: 10.1002/anie.202203673] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Indexed: 11/09/2022]
Abstract
A highly regio- and diastereoselective nucleophilic substitution at the quaternary carbon stereocenter of cyclopropyl ketones and cyclopropyl carbinol derivatives using TMSBr, DMPSCl and TMSN3 as nucleophiles has been developed. A variety of acyclic tertiary alkyl bromides, chlorides and azides were therefore prepared with excellent diastereopurity. The substitution occurs at the most substituted quaternary carbon center in a stereoinvertive manner, which may be attributed to the existence of a bicyclobutonium species.
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Affiliation(s)
- Xu Chen
- Schulich Faculty of ChemistryTechnion-Israel Institute of TechnologyTechnion CityHaifa3200009Israel
| | - Ilan Marek
- Schulich Faculty of ChemistryTechnion-Israel Institute of TechnologyTechnion CityHaifa3200009Israel
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