1
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Moghimi P, Sabet-Sarvestani H, Moghimi V, Norozi-Shad N, Szostak M. Single-atom molecular editing: transformative advances in carbocyclic and heterocyclic frameworks. Org Biomol Chem 2025; 23:3982-4005. [PMID: 40177717 DOI: 10.1039/d5ob00272a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2025]
Abstract
Single-atom editing has emerged as a transformative strategy in organic synthesis, enabling precise modification of carbocyclic and heterocyclic frameworks by selectively targeting single atoms. These frameworks are crucial backbones of pharmaceuticals, agrochemicals, and advanced materials, making this approach powerful for organic chemists. In drug discovery and natural product synthesis, single-atom editing diversifies molecular scaffolds and tailors molecular properties to enhance pharmacological activity. In heterocyclic synthesis, this approach enables controlled heteroatom substitution, addition or deletion in an unprecedented and highly selective manner compared to traditional methods. Recent advances in transition-metal catalysis, organocatalysis, photoredox catalysis, and heterocycle-to-heterocycle metamorphosis have expanded the versatility of single-atom editing, enabling the synthesis of various carbocyclic and heterocyclic compounds. Principally, this approach has been exploited to design new architectures that are not easily accessible by other methods and to establish major improvements in the synthesis of known scaffolds, providing more efficient and sustainable routes towards large-scale chemical synthesis. This review overviews recent advances, focusing on carbocyclic and heterocyclic frameworks, and is organized by key single-atom editing strategies, such as ring contractions, atom deletions, ring expansions, and atom insertions. The review highlights key transformations like Favorskii and Wolff rearrangements, alongside modern photochemical and transition-metal-catalyzed processes, to provide a broad overview of synthetic applications and inspire further advancements in targeted molecular edits.
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Affiliation(s)
- Parvin Moghimi
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Hossein Sabet-Sarvestani
- Department of Food Additives, Food Science and Technology Research Institute, Research Center for Iranian Academic Center for Education, Culture and Research (ACECR), Khorasan Razavi Branch, Mashhad, Iran
| | - Vahid Moghimi
- Department of Biology, Faculty of Science, Hakim Sabzevari University, Sabzevar, Iran
| | - Nazanin Norozi-Shad
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Michal Szostak
- Department of Chemistry, Rutgers University, Newark, NJ, USA.
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2
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Kafle P, Herndon D, Sharma I. Sulfenylcarbene-Mediated Carbon Atom Insertion for the Late-Stage Functionalization of N-Heterocycles. J Am Chem Soc 2025; 147:13824-13832. [PMID: 40215261 DOI: 10.1021/jacs.5c02012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/24/2025]
Abstract
Late-stage functionalization (LSF) is a crucial strategy in drug discovery, allowing the modification of complex molecules, including pharmaceuticals, to enhance chemical diversity in drug libraries. We harness the chemoselectivity of sulfenylcarbenes, which selectively react with alkenes even in the presence of more reactive functional groups such as alcohols, carboxylic acids, and amines. This reactivity allows sulfenylcarbenes to insert a single carbon atom bearing diverse functional groups, transforming pyrroles, indoles, and imidazoles into synthetically challenging pyridines, quinolines, and pyrimidines, respectively. Sulfenylcarbene precursors are easily synthesized in two steps from commercially available reagents. Our metal-free LSF approach employs benchtop-stable sulfenylcarbene precursors and enables late-stage modification of natural products, amino acids, pharmaceuticals, and C-glycosides. Mechanistic studies and density functional theory (DFT) calculations were conducted to investigate the regio- and chemoselectivity outcomes.
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Affiliation(s)
- Prakash Kafle
- Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, Oklahoma 73019-5251, United States
| | - Deacon Herndon
- Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, Oklahoma 73019-5251, United States
| | - Indrajeet Sharma
- Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, Oklahoma 73019-5251, United States
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3
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Liu LJ, Tian MY, Lang ZY, Wang YL, He CY, Chen YZ, Han WY. Indole-Quinoline Transmutation Enabled by a Formal Rhodium Carbynoid. Angew Chem Int Ed Engl 2025:e202501966. [PMID: 40207390 DOI: 10.1002/anie.202501966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2025] [Revised: 04/09/2025] [Accepted: 04/09/2025] [Indexed: 04/11/2025]
Abstract
Skeleton editing is an emerging and powerful tool in organic chemistry because it can simplify synthetic procedures towards complex molecules. Herein, we present an approach for indole-quinoline transmutation through rhodium-catalyzed single-carbon insertion into the C2(sp2)─C3(sp2) bond of an indole with an α-diazotrifluoroethyl sulfonium salt that we developed. This protocol involves a formal trifluoromethyl rhodium carbynoid (CF3C+ = Rh) resembling a trifluoromethyl cationic carbyne (CF3C+:), allowing facile access to an array of quinolines in moderate to high yields. Potential applications in the late-stage skeletal editing of pharmaceutical and natural product derivatives, preparation of adapalene analogs, scaled-up synthesis, and transformations of products are highlighted. Finally, a computational study was conducted to support the envisioned mechanism.
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Affiliation(s)
- Lu-Jie Liu
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
| | - Meng-Yang Tian
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
| | - Zhi-Yu Lang
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
| | - Yong-Li Wang
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
| | - Chun-Yang He
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
- Key Laboratory of Basic Pharmacology of Ministry of Education and Joint International Research Laboratory of Ethnomedicine of Ministry of Education, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
| | - Yong-Zheng Chen
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
- Key Laboratory of Basic Pharmacology of Ministry of Education and Joint International Research Laboratory of Ethnomedicine of Ministry of Education, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
| | - Wen-Yong Han
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
- Key Laboratory of Basic Pharmacology of Ministry of Education and Joint International Research Laboratory of Ethnomedicine of Ministry of Education, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
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4
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Wu FP, Tyler JL, Glorius F. Diversity-Generating Skeletal Editing Transformations. Acc Chem Res 2025; 58:893-906. [PMID: 40042370 DOI: 10.1021/acs.accounts.4c00820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2025]
Abstract
ConspectusSkeletal editing, as a synthetic tool, offers the unique potential to selectively and efficiently modify the core skeleton of a target molecule at a late-stage. The main benefit of such transformations is the rapid exploration of the chemical space around lead compounds without necessitating a de novo synthesis for each new molecule. However, many skeletal editing transformations are inherently restricted to generating a single product from a single starting compound, limiting the potential for diversification, a concept central to expediting structure-activity relationship (SAR) investigations. In this Account, we describe our efforts to develop novel skeletal editing transformations in which a modification to the central motif of a molecule is performed simultaneously with the incorporation of additional functionality that can be easily varied through a judicious choice of the reagents. Specifically, we successfully developed an α-iodonium diazo-based carbynyl radical equivalent reagent that, under photoredox conditions, could facilitate the ring-expansion of indene scaffolds while enabling the insertion of over ten different functionalized carbon atoms into the corresponding naphthalene products. This concept was later extended to the design of an atomic carbon equivalent reagent that could promote mild and selective Ciamician-Dennstedt-type indole ring-expansion reactions, while simultaneously installing an oxime ester handle that could undergo further functionalization. Furthermore, we highlight recent work from our group on multiple-atom insertion reactions, namely, the development of a photocatalyzed De Mayo reaction for the ring-expansion of cyclic ketones and a photocatalyzed dearomative ring-expansion of thiophenes via small-ring insertion. In both of these cases, multiple products can be potentially accessed from a single starting material upon variation of the insertion reagent. The diversity-generating skeletal editing strategy could also be applied to single-atom transmutation, as demonstrated by the development of a nitrogen-to-functionalized carbon atom transmutation reaction to convert pyridine to benzene rings. Here, the desired transformation was achieved via a sequence of pyridine ring-opening, Horner-Wadsworth-Emmons (HWE) olefination, and ring-closure, with a judicious choice of the HWE reagent allowing the installation of a wide variety of versatile functional groups. Finally, an energy transfer-mediated quinoline ring-contraction is discussed, specifically with reference to the ways in which it does and does not fit the criteria of a skeletal editing reaction. Although formal atom deletion transformations are typically restricted to single products from each discrete substrate, this [2 + 2] cycloaddition/rearrangement cascade also involves the incorporation of an alkene into the molecule and introduces a point of variation that can be exploited for diversity generation. We hope to not only highlight the transformations reported herein but also inspire further research into this synthetic strategy to access new classes of skeletal editing transformations that, through rapid diversity generation, provide the potential to expedite SAR investigations.
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Affiliation(s)
- Fu-Peng Wu
- Organisch-Chemisches Institut, University of Münster, 48149 Münster, Germany
| | - Jasper L Tyler
- Organisch-Chemisches Institut, University of Münster, 48149 Münster, Germany
| | - Frank Glorius
- Organisch-Chemisches Institut, University of Münster, 48149 Münster, Germany
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5
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Bossonnet A, Garner RA, O'Brien J, Trujillo C, Trowbridge AD. Oxenoid Reactivity Enabled by Targeted Photoactivation of Periodate. Angew Chem Int Ed Engl 2025; 64:e202417402. [PMID: 39423248 DOI: 10.1002/anie.202417402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Revised: 10/15/2024] [Accepted: 10/17/2024] [Indexed: 10/21/2024]
Abstract
The chemistry of low-valent intermediates continues to inspire new modes of reactivity across synthetic chemistry. But while the generation and reactivity of both carbenes and nitrenes are well-established, difficulties in accessing oxene, their oxygen-based congener, has severely hampered its application in synthesis. Here, we report a conceptually novel approach towards oxenoid reactivity through the violet-light photolysis of tetrabutylammonium periodate. Computational studies reveal an unexpected geometric change upon periodate photoexcitation that facilitates intersystem crossing and near-barrierless dissociation of triplet periodate into oxene. Under these operationally simple conditions, we have demonstrated the epoxidation of a wide range of substituted olefins, revealing unprecedented functional group compatibility. By overcoming the historic challenges associated with employing oxene as an intermediate in organic chemistry, we believe that this platform will inspire the development of new reactive oxygen-based methodologies across industry and academia.
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Affiliation(s)
- Andre Bossonnet
- Department of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL, U.K
| | - Ruth A Garner
- Department of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL, U.K
| | - James O'Brien
- Department of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL, U.K
| | - Cristina Trujillo
- Department of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL, U.K
| | - Aaron D Trowbridge
- Department of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL, U.K
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6
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Zhang X, Song Q, Liu S, Sivaguru P, Liu Z, Yang Y, Ning Y, Anderson EA, de Ruiter G, Bi X. Asymmetric dearomative single-atom skeletal editing of indoles and pyrroles. Nat Chem 2025; 17:215-225. [PMID: 39609530 DOI: 10.1038/s41557-024-01680-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 10/23/2024] [Indexed: 11/30/2024]
Abstract
Heterocycle skeletal editing has recently emerged as a powerful tactic for achieving heterocycle-to-heterocycle transmutation without the need for multistep de novo heterocycle synthesis. However, the enantioselective skeletal editing of heteroarenes through single-atom logic remains challenging. Here we report the enantiodivergent dearomative skeletal editing of indoles and pyrroles via an asymmetric carbon-atom insertion, using trifluoromethyl N-triftosylhydrazones as carbene precursors. This strategy provides a straightforward methodology to access enantiomerically enriched six-membered N-heterocycles containing a trifluoromethylated quaternary stereocentre from planar N-heteroarenes. The synthetic utility of this enantiodivergent methodology was demonstrated by a broad evaluation of reaction scope, product derivatization and concise syntheses of drug analogues. Mechanistic studies reveal that the excellent asymmetric induction arises from the initial cyclopropanation step. The asymmetric single-atom insertion strategy is expected to have a broad impact on the field of single-atom skeletal editing and catalytic asymmetric dearomatization of aromatic compounds.
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Affiliation(s)
- Xiaolong Zhang
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Qingmin Song
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Shaopeng Liu
- Department of Chemistry, Northeast Normal University, Changchun, China
| | | | - Zhaohong Liu
- Department of Chemistry, Northeast Normal University, Changchun, China.
| | - Yong Yang
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Yongyue Ning
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Edward A Anderson
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, Oxford, UK
| | - Graham de Ruiter
- Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Technion City, Haifa, Israel
| | - Xihe Bi
- Department of Chemistry, Northeast Normal University, Changchun, China.
- State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin, China.
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7
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Ren Y, Song C, Hua M, Zhao J, Li P. Violet-Light-Induced Ring-Opening of Anthranils with Chlorodiazirines. Org Lett 2025. [PMID: 39883540 DOI: 10.1021/acs.orglett.5c00220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2025]
Abstract
A violet-light-induced ring-opening of anthranils with chlorodiazirines has been developed. The metal-free protocol provides a rapid and efficient approach to N-(2-carbonylaryl)benzamides in moderate to good yields under mild conditions. The reaction appears to involve α-chlorocarbenes, which trigger the ring-opening of anthranils.
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Affiliation(s)
- Yikun Ren
- College of Chemistry and Molecular Sciences, Henan University, Kaifeng 475004, P. R. China
| | - Chuanyang Song
- College of Chemistry and Molecular Sciences, Henan University, Kaifeng 475004, P. R. China
| | - Mengna Hua
- College of Chemistry and Molecular Sciences, Henan University, Kaifeng 475004, P. R. China
| | - Jingjing Zhao
- College of Chemistry and Molecular Sciences, Henan University, Kaifeng 475004, P. R. China
| | - Pan Li
- College of Chemistry and Molecular Sciences, Henan University, Kaifeng 475004, P. R. China
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8
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Alfonso V, de la Vega-Hernández K, Suero MG. Single-Carbon Insertion into Single C-C Bonds with Diazirines. J Am Chem Soc 2025; 147:57-62. [PMID: 39680581 PMCID: PMC11726570 DOI: 10.1021/jacs.4c12632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2024] [Revised: 12/06/2024] [Accepted: 12/06/2024] [Indexed: 12/18/2024]
Abstract
A novel platform for the skeletal editing of single C-C bonds via a single-carbon insertion has been developed using diazirines. This strategy involves the photogeneration of arylchlorocarbenes as carbynoid species that undergo site-selective carbene insertion into tertiary C-H bonds and a subsequent Wagner-Meerwein rearrangement promoted by a silver salt. Our skeletal editing strategy based on a formal selective carbyne C-C bond insertion has been demonstrated in six core-to-core conversions, including linear and cyclic benzylic substrates, alkanes and late-stage functionalizations.
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Affiliation(s)
- Valero
G. Alfonso
- Institute
of Chemical Research of Catalonia (ICIQ-CERCA), The Barcelona Institute
of Science and Technology, Països Catalans 16, 43007 Tarragona, Spain
- Departament
de Química Analítica i Química Orgánica, Universitat Rovira i Virgili, Calle Marcel·lí Domingo, 1, 43007 Tarragona, Spain
| | - Karen de la Vega-Hernández
- Institute
of Chemical Research of Catalonia (ICIQ-CERCA), The Barcelona Institute
of Science and Technology, Països Catalans 16, 43007 Tarragona, Spain
| | - Marcos G. Suero
- Institute
of Chemical Research of Catalonia (ICIQ-CERCA), The Barcelona Institute
of Science and Technology, Països Catalans 16, 43007 Tarragona, Spain
- ICREA, Pg. Lluis Companys 23 08010 Barcelona, Spain
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9
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Liu Z, Zhang X, Sivaguru P, Bi X. Triftosylhydrazone in Single-Atom Skeletal Editing. Acc Chem Res 2024. [PMID: 39680057 DOI: 10.1021/acs.accounts.4c00709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2024]
Abstract
ConspectusIn the past decade, single-atom skeletal editing, which involves the precise insertion, deletion, or exchange of single atoms in the core skeleton of a molecule, has emerged as a promising synthetic strategy for the rapid construction or diversification of complex molecules without laborious de novo synthetic processes. Among them, carbene-initiated skeletal editing is particularly appealing due to the ready availability and diverse reactivities of carbene species. The initial endeavors to modify the core skeleton of heteroarenes through carbon-atom insertion could date back to 1881, when Ciamician and Denstedt described the conversion of pyrroles to pyridines by trapping haloform-derived free carbene. Despite its potential synthetic value, the general applicability of this one-carbon insertion has seen limited progress due to poor yields and harsh reaction conditions. Significant advances in skeletal editing via carbene insertion were achieved only in the past 3 years by Levin, Ball, Xu, Song, Glorius, and others. The hallmark of these approaches is facile halocyclopropanation followed by regioselective ring opening facilitated by the expulsion of the halide ion. Consequently, only specially designed α-halocarbene precursors, such as haloform derivatives, α-halodiazoacetates, chlorodiazirines, and α-chlorodiazo oxime esters, can be employed to achieve Ciamician-Denstedt-type skeletal editing. This not only limits the types of functional groups installed on the ring expansion products but also prevents their widespread adoption, especially in late-stage contexts. The enduring quest to develop environmentally friendly and versatile carbene precursors, superior functional group compatibility, and potential application in late-stage diversifications and the investigation of mechanistic insights into carbon insertion reactions remain a fundamental objective.In our endeavors over the past 5 years, we have developed o-trifluoromethylbenzenesulfonylhydrazones (named Triftosylhydrazones) as operationally safe and easily decomposable diazo surrogates and explored their application in various challenging catalytic carbene transfer reactions. Recently, our group has put great efforts into expanding the application scope and unlocking the potential of triftosylhydrazones as carbene precursors in single-atom skeletal editing reactions. Since 2018, we have realized a range of skeletal editing of acyclic 1,3-dicarbonyls with silver carbenes to access 1,4-dicarbonyls, proceeding through a cyclopropanation/ring-opening process. Inspired by these results, we recently demonstrated a series of transition-metal-catalyzed highly selective single-atom skeletal editing of medicinally interesting heteroarenes like pyrroles, indoles, and 1,2-diazoles via carbenic carbon insertion. We then achieved the skeletal editing of strained three-membered nitrogen- and oxygen-containing heterocycles through the insertion or exchange of single-carbon atoms. In this Account, we present an overview of our achievements in the single-atom skeletal editing of heterocycles, organized based on three types of in situ-generated key intermediates, such as cyclopropane, N-ylide, and O-ylide from triftosylhydrazones and heterocycles, with a focus on reaction scopes, mechanistic features, and synthetic applications. We hope that this Account will provide valuable insights and contribute to the development of new methodologies in both the skeletal editing and carbene chemistry fields.
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Affiliation(s)
- Zhaohong Liu
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| | - Xiaolong Zhang
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| | | | - Xihe Bi
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
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10
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Liu C, Zhang Y, Gu X, Huang N, Zhang M, Jiang J. Ultraviolet-Light-Induced P-H Insertion of α-Halocarbenes. Org Lett 2024; 26:10594-10599. [PMID: 39612226 DOI: 10.1021/acs.orglett.4c04049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2024]
Abstract
An intriguing P-H insertion of arylhalodiazirines with H-phosphorus oxides under ultraviolet-light irradiation is described. This methodology provides an efficient and straightforward route to the construction of a variety of α-halophosphorus oxides in good yields (≤95%), which represents a unique example of P-H insertion of α-halocarbenes for C-P bond formation. The metal-free protocol features the advantages of mild reaction conditions, high atom economy, and environmental friendliness.
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Affiliation(s)
- Chenyu Liu
- School of Chemistry and Chemical Engineering, Guangxi Colleges and Universities Key Laboratory of Applied Chemistry Technology and Resource Development, Guangxi University, Nanning 530004, China
| | - Yifei Zhang
- School of Chemistry and Chemical Engineering, Guangxi Colleges and Universities Key Laboratory of Applied Chemistry Technology and Resource Development, Guangxi University, Nanning 530004, China
| | - Xiu Gu
- School of Chemistry and Chemical Engineering, Guangxi Colleges and Universities Key Laboratory of Applied Chemistry Technology and Resource Development, Guangxi University, Nanning 530004, China
| | - Nan Huang
- School of Chemistry and Chemical Engineering, Guangxi Colleges and Universities Key Laboratory of Applied Chemistry Technology and Resource Development, Guangxi University, Nanning 530004, China
| | - Min Zhang
- School of Chemistry and Chemical Engineering, Guangxi Colleges and Universities Key Laboratory of Applied Chemistry Technology and Resource Development, Guangxi University, Nanning 530004, China
| | - Jun Jiang
- School of Chemistry and Chemical Engineering, Guangxi Colleges and Universities Key Laboratory of Applied Chemistry Technology and Resource Development, Guangxi University, Nanning 530004, China
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11
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To HM, Mirakhorli S, Ollevier T. Synthesis of aryl fluorocyclopropanes from aryl fluorodiazirines and alkenes in continuous flow. Chem Commun (Camb) 2024; 60:14625-14628. [PMID: 39565166 DOI: 10.1039/d4cc01881h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2024]
Abstract
Photochemically induced generation of aryl fluorocarbenes from aryl fluorodiazirines and their subsequent [2+1] cycloaddition with alkenes was developed in continuous flow. The in situ generated electrophilic aryl fluorocarbene reacted with a range of alkenes enabling the synthesis of the corresponding 3-fluoro-3-aryl-cyclopropanes in a 5-minute residence time under 380-nm LED irradiation in continuous flow (20 examples). The scaled-up reaction of 3-fluoro-3-(4-chlorophenyl)-3H-diazirine with styrene under irradiation at 380 nm led to the fluorocyclopropane with a 77% yield, providing a throughput yield of 0.945 g h-1.
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Affiliation(s)
- Hoang-Minh To
- Département de Chimie, Université Laval, 1045 avenue de la Médecine, Québec, QC, G1V 0A6, Canada.
| | - Shima Mirakhorli
- Département de Chimie, Université Laval, 1045 avenue de la Médecine, Québec, QC, G1V 0A6, Canada.
| | - Thierry Ollevier
- Département de Chimie, Université Laval, 1045 avenue de la Médecine, Québec, QC, G1V 0A6, Canada.
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12
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Liu S, Yang Y, Song Q, Liu Z, Sivaguru P, Zhang Y, de Ruiter G, Anderson EA, Bi X. Halogencarbene-free Ciamician-Dennstedt single-atom skeletal editing. Nat Commun 2024; 15:9998. [PMID: 39557879 PMCID: PMC11574194 DOI: 10.1038/s41467-024-54379-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Accepted: 11/10/2024] [Indexed: 11/20/2024] Open
Abstract
Single-atom skeletal editing is an increasingly powerful tool for scaffold hopping-based drug discovery. However, the insertion of a functionalized carbon atom into heteroarenes remains rare, especially when performed in complex chemical settings. Despite more than a century of research, Ciamician-Dennstedt (C-D) rearrangement remains limited to halocarbene precursors. Herein, we report a general methodology for the Ciamician-Dennstedt reaction using α-halogen-free carbenes generated in situ from N-triftosylhydrazones. This one-pot, two-step protocol enables the insertion of various carbenes, including those previously unexplored in C-D skeletal editing chemistry, into indoles/pyrroles scaffolds to access 3-functionalized quinolines/pyridines. Mechanistic studies reveal a pathway involving the intermediacy of a 1,4-dihydroquinoline intermediate, which could undergo oxidative aromatization or defluorinative aromatization to form different carbon-atom insertion products.
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Affiliation(s)
- Shaopeng Liu
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Yong Yang
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Qingmin Song
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Zhaohong Liu
- Department of Chemistry, Northeast Normal University, Changchun, China.
| | | | - Yifan Zhang
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Graham de Ruiter
- Schulich Faculty of Chemistry, Technion-Israel Institute of Technology, Haifa, Israel
| | - Edward A Anderson
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Oxford, UK.
| | - Xihe Bi
- Department of Chemistry, Northeast Normal University, Changchun, China.
- State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin, China.
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13
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Qin Q, Zhang L, Wei J, Qiu X, Hao S, An XD, Jiao N. Direct oxygen insertion into C-C bond of styrenes with air. Nat Commun 2024; 15:9015. [PMID: 39424824 PMCID: PMC11489579 DOI: 10.1038/s41467-024-53266-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Accepted: 10/08/2024] [Indexed: 10/21/2024] Open
Abstract
Skeletal editing of single-atom insertion to basic chemicals has been demonstrated as an efficient strategy for the discovery of structurally diversified compounds. Previous endeavors in skeletal editing have successfully facilitated the insertion of boron, nitrogen, and carbon atoms. Given the prevalence of oxygen atoms in biologically active molecules, the direct oxygenation of C-C bonds through single-oxygen-atom insertion like Baeyer-Villiger reaction is of particular significance. Herein, we present an approach for the skeletal modification of styrenes using O2 via oxygen insertion, resulting in the formation of aryl ether frameworks under mild reaction conditions. The broad functional-group tolerance and the excellent chemo- and regioselectivity are demonstrated in this protocol. A preliminary mechanistic study indicates the potential involvement of 1,2-aryl radical migration in this reaction.
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Affiliation(s)
- Qixue Qin
- College of Chemistry and Pharmaceutical Sciences, Qingdao Agricultural University, Chang Cheng Rd. 700, Qingdao, Shandong, China.
| | - Liang Zhang
- College of Chemistry and Pharmaceutical Sciences, Qingdao Agricultural University, Chang Cheng Rd. 700, Qingdao, Shandong, China
| | - Jialiang Wei
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Chemical Biology Center, Peking University, Beijing, China
| | - Xu Qiu
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Chemical Biology Center, Peking University, Beijing, China
| | - Shuanghong Hao
- College of Chemistry and Pharmaceutical Sciences, Qingdao Agricultural University, Chang Cheng Rd. 700, Qingdao, Shandong, China
| | - Xiao-De An
- College of Chemistry and Pharmaceutical Sciences, Qingdao Agricultural University, Chang Cheng Rd. 700, Qingdao, Shandong, China
| | - Ning Jiao
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Chemical Biology Center, Peking University, Beijing, China.
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14
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Li FS, Zou XY, Hu TQ, Sun Q, Xu Z, Zhou B, Ye LW. Asymmetric one-carbon ring expansion of diverse N-heterocycles via copper-catalyzed diyne cyclization. SCIENCE ADVANCES 2024; 10:eadq7767. [PMID: 39383216 PMCID: PMC11463259 DOI: 10.1126/sciadv.adq7767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Accepted: 09/04/2024] [Indexed: 10/11/2024]
Abstract
One-carbon ring expansion reaction of N-heterocycles has gained particular attention in the past decade because this method allows for the conversion of readily available N-heterocycles into potentially useful complex ring-expanded N-heterocycles, which are inaccessible by traditional methods. However, the catalytic asymmetric variant of this reaction has been rarely reported to date. Herein, we disclose an enantioselective one-carbon ring expansion reaction through chiral copper-catalyzed diyne cyclization, leading to the practical, atom-economic and divergent assembly of an array of valuable chiral N-heterocycles bearing a quaternary stereocenter in generally good to excellent yields with excellent enantioselectivities (up to >99% ee). This protocol represents the first example of asymmetric one-carbon ring expansion reaction of N-heterocycles based on alkynes.
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Affiliation(s)
- Fu-Shuai Li
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Key Laboratory of Chemical Biology of Fujian Province, and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Xiu-Yuan Zou
- Key Laboratory of of Jiangxi Province for Persistent Pollutants Control and Resources Recycle, Nanchang Hangkong University, Nanchang 330063, China
| | - Tian-Qi Hu
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Key Laboratory of Chemical Biology of Fujian Province, and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Qing Sun
- Key Laboratory of of Jiangxi Province for Persistent Pollutants Control and Resources Recycle, Nanchang Hangkong University, Nanchang 330063, China
| | - Zhou Xu
- Jiangsu Key Laboratory of New Drug Research and Clinical Pharmacy, School of Pharmacy, Xuzhou Medical University, Xuzhou 221004, China
| | - Bo Zhou
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Key Laboratory of Chemical Biology of Fujian Province, and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Long-Wu Ye
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Key Laboratory of Chemical Biology of Fujian Province, and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China
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15
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He C, Song W, Wei D, Zhao W, Yu Q, Tang J, Ning Y, Murali K, Sivaguru P, de Ruiter G, Bi X. Rhodium-Catalyzed Asymmetric Cyclopropanation of Indoles with N-Triftosylhydrazones. Angew Chem Int Ed Engl 2024:e202408220. [PMID: 39363722 DOI: 10.1002/anie.202408220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Revised: 09/28/2024] [Accepted: 10/02/2024] [Indexed: 10/05/2024]
Abstract
Herein we report a general rhodium-catalyzed asymmetric intermolecular dearomative cyclopropanation of indoles using trifluoromethyl N-triftosylhydrazones as carbene precursors. The reaction enables the rapid construction of diverse cyclopropane-fused indolines bearing a trifluoromethylated quaternary stereocenter with high enantioselectivity (up to 99 % ee). This mild method exhibits broad substrate scope, tolerating various functional groups, and can even be utilized for the late-stage diversification of complex bioactive molecules. DFT calculations suggest that the formation of a key zwitterionic intermediate is responsible for the chiral induction. Overall, this approach opens up new possibilities for asymmetric cyclopropanation of challenging aromatic heterocyclic compounds.
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Affiliation(s)
- Caicai He
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Wei Song
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Dandan Wei
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Wei Zhao
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Qianfei Yu
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Jiaqi Tang
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Yongquan Ning
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Karunanidhi Murali
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | | | - Graham de Ruiter
- Schulich Faculty of Chemistry, Technion Israel Institute of Technology, Technion City, 3200008, Haifa, Israel
| | - Xihe Bi
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
- State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin, 300071, China
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16
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Li L, Chen H, Zhang X, Murali K, Zhu Q, Liu M, Zhang H, Nenajdenko V, Bi X. Silver-Catalyzed Single-Carbon Insertion of Indoles with Acetophenone N-Triftosylhydrazones. Org Lett 2024; 26:7207-7211. [PMID: 39146255 DOI: 10.1021/acs.orglett.4c02633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/17/2024]
Abstract
Here, we report a silver carbene-enabled single-carbon insertion reaction of indoles via a one-pot, two-step sequence to deliver a dearomative quaternary center quinoline scaffold in a modular fashion. Specifically, we used N-triftosylhydrazones as masked donor-donor carbene precursors that facilitate the insertion of carbon atoms bearing various functional groups to the library of functionalized quinoline. Experimental and DFT evidence support the transient presence of a cyclopropane species and removal of protecting groups.
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Affiliation(s)
- Linxuan Li
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| | - Hongzhu Chen
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| | - Xiaolong Zhang
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| | - Karunanidhi Murali
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| | - Qingwen Zhu
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| | - Menglin Liu
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| | - Hongru Zhang
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
| | - Valentine Nenajdenko
- Department of Chemistry, Lomonosov Moscow State University, 119899 Moscow, Russia
| | - Xihe Bi
- Department of Chemistry, Northeast Normal University, Changchun 130024, China
- State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
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17
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Wu FP, Lenz M, Suresh A, Gogoi AR, Tyler JL, Daniliuc CG, Gutierrez O, Glorius F. Nitrogen-to-functionalized carbon atom transmutation of pyridine. Chem Sci 2024; 15:d4sc04413d. [PMID: 39246332 PMCID: PMC11372446 DOI: 10.1039/d4sc04413d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Accepted: 08/25/2024] [Indexed: 09/10/2024] Open
Abstract
The targeted and selective replacement of a single atom in an aromatic system represents a powerful strategy for the rapid interconversion of molecular scaffolds. Herein, we report a pyridine-to-benzene transformation via nitrogen-to-carbon skeletal editing. This approach proceeds via a sequence of pyridine ring-opening, imine hydrolysis, olefination, electrocyclization, and aromatization to achieve the desired transmutation. The most notable features of this transformation are the ability to directly install a wide variety of versatile functional groups in the benzene scaffolding, including ester, ketone, amide, nitrile, and phosphate ester fragments, as well as the inclusion of meta-substituted pyridines which have thus far been elusive for related strategies.
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Affiliation(s)
- Fu-Peng Wu
- Organisch-Chemisches Institut, Universität Münster Corrensstraße 40 48149 Münster Germany
| | - Madina Lenz
- Organisch-Chemisches Institut, Universität Münster Corrensstraße 40 48149 Münster Germany
| | - Adhya Suresh
- Department of Chemistry, Texas A&M University 3255 TAMU, 580 Ross St 77843 College Station TX USA
| | - Achyut R Gogoi
- Department of Chemistry, Texas A&M University 3255 TAMU, 580 Ross St 77843 College Station TX USA
| | - Jasper L Tyler
- Organisch-Chemisches Institut, Universität Münster Corrensstraße 40 48149 Münster Germany
| | - Constantin G Daniliuc
- Organisch-Chemisches Institut, Universität Münster Corrensstraße 40 48149 Münster Germany
| | - Osvaldo Gutierrez
- Department of Chemistry, Texas A&M University 3255 TAMU, 580 Ross St 77843 College Station TX USA
| | - Frank Glorius
- Organisch-Chemisches Institut, Universität Münster Corrensstraße 40 48149 Münster Germany
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18
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Cheng Z, Xu H, Hu Z, Zhu M, Houk KN, Xue XS, Jiao N. Carbene-Assisted Arene Ring-Opening. J Am Chem Soc 2024; 146:16963-16970. [PMID: 38691630 DOI: 10.1021/jacs.4c03634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2024]
Abstract
Despite the significant achievements in dearomatization and C-H functionalization of arenes, the arene ring-opening remains a largely unmet challenge and is underdeveloped due to the high bond dissociation energy and strong resonance stabilization energy inherent in aromatic compounds. Herein, we demonstrate a novel carbene assisted strategy for arene ring-opening. The understanding of the mechanism by our DFT calculations will stimulate wide application of bulk arene chemicals for the synthesis of value-added polyconjugated chain molecules. Various aryl azide derivatives now can be directly converted into valuable polyconjugated enynes, avoiding traditional synthesis including multistep unsaturated precursors, poor selectivity control, and subsequent transition-metal catalyzed cross-coupling reactions. The simple conditions required were demonstrated in the late-stage modification of complex molecules and fused ring compounds. This chemistry expands the horizons of carbene chemistry and provides a novel pathway for arene ring-opening.
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Affiliation(s)
- Zengrui Cheng
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, China
| | - Haoran Xu
- Key Laboratory of Fluorine and Nitrogen Chemistry and Advanced Materials, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai 200032, China
| | - Zhibin Hu
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, China
| | - Minghui Zhu
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, China
| | - K N Houk
- Department of Chemistry and Biochemistry, University of California─Los Angeles, Los Angeles, California 90095-1569, United States
| | - Xiao-Song Xue
- Key Laboratory of Fluorine and Nitrogen Chemistry and Advanced Materials, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai 200032, China
| | - Ning Jiao
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, China
- State Key Laboratory of Organometallic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China
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19
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Yang Y, Song Q, Sivaguru P, Liu Z, Shi D, Tian T, de Ruiter G, Bi X. Controllable Skeletal and Peripheral Editing of Pyrroles with Vinylcarbenes. Angew Chem Int Ed Engl 2024; 63:e202401359. [PMID: 38597885 DOI: 10.1002/anie.202401359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 03/14/2024] [Accepted: 04/09/2024] [Indexed: 04/11/2024]
Abstract
The skeletal editing of azaarenes through insertion, deletion, or swapping of single atoms has recently gained considerable momentum in chemical synthesis. Here, we describe a practical skeletal editing strategy using vinylcarbenes in situ generated from trifluoromethyl vinyl N-triftosylhydrazones, leading to the first dearomative skeletal editing of pyrroles through carbon-atom insertion. Furthermore, depending on the used catalyst and substrate, three types of peripheral editing reactions of pyrroles are also disclosed: α- or γ-selective C-H insertion, and [3+2] cycloaddition. These controllable molecular editing reactions provide a powerful platform for accessing medicinally relevant CF3-containing N-heterocyclic frameworks, such as 2,5-dihydropyridines, piperidines, azabicyclo[3.3.0]octadienes, and allylated pyrroles from readily available pyrroles. Mechanistic insights from experiments and density functional theory (DFT) calculations shed light on the origin of substrate- or catalyst-controlled chemo- and regioselectivity as well as the reaction mechanism.
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Affiliation(s)
- Yong Yang
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Qingmin Song
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | | | - Zhaohong Liu
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Dan Shi
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Tian Tian
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Graham de Ruiter
- Schulich Faculty of Chemistry, Technion-Israel Institute of Technol-ogy Technion City, 3200008, Haifa, Israel
| | - Xihe Bi
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
- State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin, 300071, China
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20
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To HM, Ollevier T. Cyclopropanation of Alkenes with Halodiazirines as Halocarbene Precursors in Continuous Flow. Chemistry 2024; 30:e202303969. [PMID: 38490952 DOI: 10.1002/chem.202303969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 03/11/2024] [Accepted: 03/13/2024] [Indexed: 03/17/2024]
Abstract
The cyclopropanation reaction of alkenes with photolytically-generated chlorocarbenes from chlorodiazirines is reported as an effective way to prepare substituted 3-chloro-3-aryl-cyclopropanes. This practical and efficient approach allows the synthesis of various 3-chloro-3-aryl-cyclopropanes (32 examples) in continuous flow in 5-minute residence time under light-emitting diode (LED) irradiation. The conditions using 380 nm LED irradiation were successfully extended to the synthesis of substituted 3-bromo-3-aryl-cyclopropanes (3 examples).
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Affiliation(s)
- Hoang-Minh To
- Département de chimie, Université Laval, 1045 avenue de la Médecine, Québec, QC, G1V 0A6, Canada
| | - Thierry Ollevier
- Département de chimie, Université Laval, 1045 avenue de la Médecine, Québec, QC, G1V 0A6, Canada
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21
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Wootton JM, Tam JKF, Unsworth WP. Cascade ring expansion reactions for the synthesis of medium-sized rings and macrocycles. Chem Commun (Camb) 2024; 60:4999-5009. [PMID: 38655659 DOI: 10.1039/d4cc01303d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
This Feature Article discusses recent advances in the development of cascade ring expansion reactions for the synthesis of medium-sized rings and macrocycles. Cascade ring expansion reactions have much potential for use in the synthesis of biologically important medium-sized rings and macrocycles, most notably as they don't require high dilution conditions, which are commonly used in established end-to-end macrocyclisation methods. Operation by cascade ring expansion method can allow large ring products to be accessed via rearrangements that proceed exclusively by normal-sized ring cyclisation steps. Ensuring that there is adequate thermodynamic driving force for ring expansion is a key challenge when designing such methods, especially for the expansion of normal-sized rings into medium-sized rings. This Article is predominantly focused on methods developed in our own laboratory, with selected works by other groups also discussed. Thermodynamic considerations, mechanism, reaction design, route planning and future perspective for this field are all covered.
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Affiliation(s)
- Jack M Wootton
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
| | - Jerry K F Tam
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
| | - William P Unsworth
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
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22
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Li L, Chen H, Liu M, Zhu Q, Zhang H, de Ruiter G, Bi X. Silver-Catalyzed Dearomative Skeletal Editing of Indazoles by Donor Carbene Insertion. Chemistry 2024; 30:e202304227. [PMID: 38199953 DOI: 10.1002/chem.202304227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 01/09/2024] [Accepted: 01/10/2024] [Indexed: 01/12/2024]
Abstract
Given the prevalence of heterocyclic scaffolds in drug-related molecules, converting these highly modular heterocyclic scaffolds into structural diversified and dearomatized analogs is an ideal strategy for improving their physicochemical and pharmacokinetic properties. Here, we described an efficient method for silver carbene-mediated dearomative N-N bond cleavage leading to skeletal hopping between indazole and 1,2-dihydroquinazoline via a highly selective single-carbon insertion procedure. Using this methodology, a series of dihydroquinazoline analogues with diarylmethylene-substituted quaternary carbon centers were constructed with excellent yields and good functional group compatibility, which was further illustrated by the late-stage diversification of important pharmaceutically active ingredients. DFT calculations indicated that the silver catalyst not only induces the formation of the silver carbene, but also activates the diazahexatriene intermediate, which plays a crucial role in the formation of the C-N bond.
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Affiliation(s)
- Linxuan Li
- Department of Chemistry, Northeast Normal University, 130024, Changchun, China
| | - Hongzhu Chen
- Department of Chemistry, Northeast Normal University, 130024, Changchun, China
| | - Menglin Liu
- Department of Chemistry, Northeast Normal University, 130024, Changchun, China
| | - Qingwen Zhu
- Department of Chemistry, Northeast Normal University, 130024, Changchun, China
| | - Hongru Zhang
- Department of Chemistry, Northeast Normal University, 130024, Changchun, China
| | - Graham de Ruiter
- Schulich Faculty of Chemistry, Technion Israel Institute of Technology, Technion City, 3200008, Haifa, Israel
| | - Xihe Bi
- Department of Chemistry, Northeast Normal University, 130024, Changchun, China
- State Key Laboratory of Elemento-Organic Chemistry, Nankai University, 300071, Tianjin, China
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23
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Boudry E, Bourdreux F, Marrot J, Moreau X, Ghiazza C. Dearomatization of Pyridines: Photochemical Skeletal Enlargement for the Synthesis of 1,2-Diazepines. J Am Chem Soc 2024; 146:2845-2854. [PMID: 38235671 DOI: 10.1021/jacs.3c14467] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2024]
Abstract
In this report, we developed a unified and standardized one-pot sequence that converts pyridine derivatives into 1,2-diazepines by inserting a nitrogen atom. This skeletal transformation capitalizes on the in situ generation of 1-aminopyridinium ylides, which rearrange under UV light irradiation. A thorough evaluation of the key parameters (wavelength, reaction conditions, activating agent) allowed us to elaborate on a simple, mild, and user-friendly protocol. The model reaction was extrapolated to more than 40 examples, including drug derivatives, affording unique 7-membered structures. Mechanistic evidence supports the transient presence of a diazanorcaradiene species. Finally, pertinent transformations of the products, including ring contraction reactions to form pyrazoles, were conducted and paved the way to a broad application of the developed protocol.
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Affiliation(s)
- Elise Boudry
- Université Paris-Saclay, UVSQ, CNRS, UMR 8180 Institut Lavoisier de Versailles, 78035 Versailles Cedex, France
| | - Flavien Bourdreux
- Université Paris-Saclay, UVSQ, CNRS, UMR 8180 Institut Lavoisier de Versailles, 78035 Versailles Cedex, France
| | - Jérôme Marrot
- Université Paris-Saclay, UVSQ, CNRS, UMR 8180 Institut Lavoisier de Versailles, 78035 Versailles Cedex, France
| | - Xavier Moreau
- Université Paris-Saclay, UVSQ, CNRS, UMR 8180 Institut Lavoisier de Versailles, 78035 Versailles Cedex, France
| | - Clément Ghiazza
- Université Paris-Saclay, UVSQ, CNRS, UMR 8180 Institut Lavoisier de Versailles, 78035 Versailles Cedex, France
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24
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Guo H, Qiu S, Xu P. One-Carbon Ring Expansion of Indoles and Pyrroles: A Straightforward Access to 3-Fluorinated Quinolines and Pyridines. Angew Chem Int Ed Engl 2023:e202317104. [PMID: 38079290 DOI: 10.1002/anie.202317104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Indexed: 12/22/2023]
Abstract
3-Fluorinated quinolines and pyridines are prevalent pharmacophores, yet their synthesis is often challenging. Herein, we demonstrate that dibromofluoromethane as bromofluorocarbene source enables the one-carbon ring expansion of readily available indoles and pyrroles to structurally diverse 3-fluorinated quinolines and pyridines. This straightforward protocol requires only a short reaction time of ten minutes and can be performed under air atmosphere. Preliminary investigations reveal that this strategy can also be applied to the synthesis of other valuable azines by using different 1,1-dibromoalkanes as bromocarbene sources.
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Affiliation(s)
- Huaixuan Guo
- Department of Chemistry, College of Sciences, Shanghai University, 99 Shangda Road, 200444, Shanghai, P. R. China
| | - Shiqin Qiu
- Department of Chemistry, College of Sciences, Shanghai University, 99 Shangda Road, 200444, Shanghai, P. R. China
| | - Peng Xu
- Department of Chemistry, College of Sciences, Shanghai University, 99 Shangda Road, 200444, Shanghai, P. R. China
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25
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Reisenbauer JC, Paschke ASK, Krizic J, Botlik BB, Finkelstein P, Morandi B. Direct Access to Quinazolines and Pyrimidines from Unprotected Indoles and Pyrroles through Nitrogen Atom Insertion. Org Lett 2023; 25:8419-8423. [PMID: 37983173 DOI: 10.1021/acs.orglett.3c03264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2023]
Abstract
Recent advances in single-atom insertion reactions have opened up new synthetic approaches for molecular diversification. Developing innovative strategies to directly transform biologically relevant molecules, without any prefunctionalization, is key to further expanding the scope and utility of such transformations. Herein, the direct access to quinazolines and pyrimidines from the corresponding unprotected 1H-indoles and 1H-pyrroles is reported, relying on the implementation of lithium bis(trimethylsilyl)amide (LiHMDS) as a novel nitrogen atom source in combination with commercially available hypervalent iodine reagents. Further application of this strategy in late-stage settings demonstrates its potential in lead structure diversification campaigns.
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Affiliation(s)
| | | | - Jelena Krizic
- ETH Zürich, Vladimir-Prelog-Weg 3, HCI, 8093 Zürich, Switzerland
| | - Bence B Botlik
- ETH Zürich, Vladimir-Prelog-Weg 3, HCI, 8093 Zürich, Switzerland
| | | | - Bill Morandi
- ETH Zürich, Vladimir-Prelog-Weg 3, HCI, 8093 Zürich, Switzerland
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26
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Joynson BW, Cumming GR, Ball LT. Photochemically Mediated Ring Expansion of Indoles and Pyrroles with Chlorodiazirines: Synthetic Methodology and Thermal Hazard Assessment. Angew Chem Int Ed Engl 2023; 62:e202305081. [PMID: 37294032 PMCID: PMC11497286 DOI: 10.1002/anie.202305081] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 06/08/2023] [Accepted: 06/09/2023] [Indexed: 06/10/2023]
Abstract
We demonstrate that arylchlorodiazirines serve as photo-activated halocarbene precursors for the selective one-carbon ring expansion of N-substituted pyrroles and indoles to the corresponding pyridinium and quinolinium salts. Preliminary investigations indicate that the same strategy also enables the conversion of N-substituted pyrazoles to pyrimidinium salts. The N-substituent of the substrate plays an essential role in: (1) increasing substrate scope by preventing product degradation, (2) enhancing yields by suppressing co-product inhibition, and (3) activating the azinium products towards subsequent synthetic manipulations. This latter point is illustrated by subjecting the quinolinium salts to four complementary partial reductions, which provide concise access to ring-expanded products with different degrees of increased C(sp3 ) character. Thermal analysis of the diazirines by differential scanning calorimetry (DSC) provides detailed insight into their energetic properties, and highlights the safety benefits of photolyzing-rather than thermolyzing-these reagents.
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Affiliation(s)
- Ben W. Joynson
- School of ChemistryUniversity of NottinghamNottinghamNG7 2RDUK
| | - Graham R. Cumming
- Centro de Investigación Lilly S. A.Avda. de la Industria 30, AlcobendasMadrid28108Spain
| | - Liam T. Ball
- School of ChemistryUniversity of NottinghamNottinghamNG7 2RDUK
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