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Tram NDT, Xu J, Chan KH, Rajamani L, Ee PLR. Bacterial clustering biomaterials as anti-infective therapies. Biomaterials 2025; 316:123017. [PMID: 39708775 DOI: 10.1016/j.biomaterials.2024.123017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2024] [Revised: 11/23/2024] [Accepted: 12/13/2024] [Indexed: 12/23/2024]
Abstract
In Nature, bacterial clustering by host-released peptides or nucleic acids is an evolutionarily conserved immune defense strategy employed to prevent adhesion of pathogenic microbes, which is prerequisite for most infections. Synthetic anti-adhesion strategies present as non-lethal means of targeting bacteria and may potentially be used to avoid resistance against antimicrobial therapies. From bacteria-agglutinating biomolecules discovered in nature to synthetic designs involving peptides, cationic polymers and nanoparticles, the modes of actions appear broad and unconsolidated. Herein, we present a critical review and update of the state-of-the-art in synthetic bacteria-clustering designs with proposition of a more streamlined nomenclature and classification. Overall, this review aims to consolidate the conceptual framework in the field of bacterial clustering and highlight its potentials as an avenue for discovering novel antibacterial biomaterials.
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Affiliation(s)
- Nhan Dai Thien Tram
- Department of Pharmacy and Pharmaceutical Sciences, National University of Singapore, 18 Science Drive 4, Singapore, 117559, Singapore
| | - Jian Xu
- Department of Pharmacy and Pharmaceutical Sciences, National University of Singapore, 18 Science Drive 4, Singapore, 117559, Singapore
| | - Kiat Hwa Chan
- Division of Science, Yale-NUS College, 16 College Avenue West, Singapore, 138527, Singapore; NUS College, National University of Singapore, 18 College Avenue East, Singapore, 138593, Singapore
| | - Lakshminarayanan Rajamani
- Department of Pharmacy and Pharmaceutical Sciences, National University of Singapore, 18 Science Drive 4, Singapore, 117559, Singapore; Ocular Infections and Anti-Microbials Research Group, Singapore Eye Research Institute, Singapore, 169856, Singapore; Ophthalmology and Visual Sciences Academic Clinical Program, Duke-NUS Graduate Medical School, Singapore, 169857, Singapore
| | - Pui Lai Rachel Ee
- Department of Pharmacy and Pharmaceutical Sciences, National University of Singapore, 18 Science Drive 4, Singapore, 117559, Singapore.
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2
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Correia HD, Chowdhury S, Ramos AP, Guy L, Demets GJ, Bucher C. Dynamic supramolecular polymers built from cucurbit[n]urils and viologens. POLYM INT 2018. [DOI: 10.1002/pi.5709] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Henrique Dias Correia
- Escola Técnica Escola técnica estadual Ângelo Cavalheiro, Rua José Correia Filho 750 Serrana Brazil
- Departamento de Química, Faculdade de Filosofia Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Av. Bandeirantes 3900, CEP 14040‐901 Ribeirão Preto Brazil
| | - Shagor Chowdhury
- Univ Lyon, Ens de Lyon, CNRS UMR 5182, Université Claude Bernard Lyon 1, Laboratoire de Chimie Lyon France
| | - Ana Paula Ramos
- Departamento de Química, Faculdade de Filosofia Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Av. Bandeirantes 3900, CEP 14040‐901 Ribeirão Preto Brazil
| | - Laure Guy
- Univ Lyon, Ens de Lyon, CNRS UMR 5182, Université Claude Bernard Lyon 1, Laboratoire de Chimie Lyon France
| | - Grégoire Jean‐François Demets
- Departamento de Química, Faculdade de Filosofia Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Av. Bandeirantes 3900, CEP 14040‐901 Ribeirão Preto Brazil
| | - Christophe Bucher
- Univ Lyon, Ens de Lyon, CNRS UMR 5182, Université Claude Bernard Lyon 1, Laboratoire de Chimie Lyon France
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3
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Development of hydroxylated cucurbit[ n ]urils, their derivatives and potential applications. Coord Chem Rev 2017. [DOI: 10.1016/j.ccr.2017.07.017] [Citation(s) in RCA: 56] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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4
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Na G, He Y, Kim Y, Lee M. Switching of carbohydrate nanofibers for regulating cell proliferation. SOFT MATTER 2016; 12:2846-2850. [PMID: 26907533 DOI: 10.1039/c5sm03073k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
We report switchable, fluorescent carbohydrate nanofibers formed through the self-assembly of aromatic rod amphiphiles with a combination of mannose epitopes and thermoresponsive oligoether dendrons. The carbohydrate nanofibers undergo reversible switching between carbohydrate-exposed and hidden states on their surface in response to a thermal signal, and have the ability to regulate cell proliferation.
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Affiliation(s)
- Guangren Na
- State Key Lab of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - Ying He
- State Key Lab of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - Yongju Kim
- State Key Lab of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - Myongsoo Lee
- State Key Lab of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
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5
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Delbianco M, Bharate P, Varela-Aramburu S, Seeberger PH. Carbohydrates in Supramolecular Chemistry. Chem Rev 2015; 116:1693-752. [PMID: 26702928 DOI: 10.1021/acs.chemrev.5b00516] [Citation(s) in RCA: 180] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Carbohydrates are involved in a variety of biological processes. The ability of sugars to form a large number of hydrogen bonds has made them important components for supramolecular chemistry. We discuss recent advances in the use of carbohydrates in supramolecular chemistry and reveal that carbohydrates are useful building blocks for the stabilization of complex architectures. Systems are presented according to the scaffold that supports the glyco-conjugate: organic macrocycles, dendrimers, nanomaterials, and polymers are considered. Glyco-conjugates can form host-guest complexes, and can self-assemble by using carbohydrate-carbohydrate interactions and other weak interactions such as π-π interactions. Finally, complex supramolecular architectures based on carbohydrate-protein interactions are discussed.
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Affiliation(s)
- Martina Delbianco
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces , Am Mühlenberg 1, 14476 Potsdam, Germany
| | - Priya Bharate
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces , Am Mühlenberg 1, 14476 Potsdam, Germany.,Institute of Chemistry and Biochemistry, Freie Universität Berlin , Arnimallee 22, 14195 Berlin, Germany
| | - Silvia Varela-Aramburu
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces , Am Mühlenberg 1, 14476 Potsdam, Germany.,Institute of Chemistry and Biochemistry, Freie Universität Berlin , Arnimallee 22, 14195 Berlin, Germany
| | - Peter H Seeberger
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces , Am Mühlenberg 1, 14476 Potsdam, Germany.,Institute of Chemistry and Biochemistry, Freie Universität Berlin , Arnimallee 22, 14195 Berlin, Germany
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6
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Chen H, Ma H, Chieng YY, Hou S, Li X, Tan Y. Aggregation and thermal gelation of N-isopropylacrylamide based cucurbit[7]uril side-chain polypseudorotaxanes with low pseudorotaxane content. RSC Adv 2015. [DOI: 10.1039/c4ra17140c] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
Low pseudorotaxane content (≤3 mol%) endows N-isopropylacrylamide based cucurbit[7]uril polypseudorotaxanes unique aggregation and thermal gelation properties.
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Affiliation(s)
- Hao Chen
- School of Chemistry and Chemical Engineering
- Shandong University
- Jinan 250100
- People's Republic of China
- The Key Laboratory of Special Functional Aggregated Materials
| | - Haili Ma
- School of Chemistry and Chemical Engineering
- Shandong University
- Jinan 250100
- People's Republic of China
- The Key Laboratory of Special Functional Aggregated Materials
| | - Yu Yuan Chieng
- Institute of Materials Research and Engineering
- Agency for Science, Technology and Research (A*STAR)
- Singapore 117602
- Singapore
| | - Shengzhen Hou
- School of Chemistry and Chemical Engineering
- Shandong University
- Jinan 250100
- People's Republic of China
- The Key Laboratory of Special Functional Aggregated Materials
| | - Xu Li
- Institute of Materials Research and Engineering
- Agency for Science, Technology and Research (A*STAR)
- Singapore 117602
- Singapore
| | - Yebang Tan
- School of Chemistry and Chemical Engineering
- Shandong University
- Jinan 250100
- People's Republic of China
- The Key Laboratory of Special Functional Aggregated Materials
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7
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Cecioni S, Imberty A, Vidal S. Glycomimetics versus Multivalent Glycoconjugates for the Design of High Affinity Lectin Ligands. Chem Rev 2014; 115:525-61. [DOI: 10.1021/cr500303t] [Citation(s) in RCA: 381] [Impact Index Per Article: 34.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Samy Cecioni
- CERMAV, Université Grenoble Alpes and CNRS, BP 53, F-38041 Grenoble Cedex 9, France
- Institut
de Chimie et Biochimie Moléculaires et Supramoléculaires,
Laboratoire de Chimie Organique 2 - Glycochimie, UMR 5246, Université Lyon 1 and CNRS, 43 Boulevard du 11 Novembre 1918, F-69622, Villeurbanne, France
| | - Anne Imberty
- CERMAV, Université Grenoble Alpes and CNRS, BP 53, F-38041 Grenoble Cedex 9, France
| | - Sébastien Vidal
- Institut
de Chimie et Biochimie Moléculaires et Supramoléculaires,
Laboratoire de Chimie Organique 2 - Glycochimie, UMR 5246, Université Lyon 1 and CNRS, 43 Boulevard du 11 Novembre 1918, F-69622, Villeurbanne, France
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8
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Brinkmann J, Cavatorta E, Sankaran S, Schmidt B, van Weerd J, Jonkheijm P. About supramolecular systems for dynamically probing cells. Chem Soc Rev 2014; 43:4449-69. [PMID: 24681633 DOI: 10.1039/c4cs00034j] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
This article reviews the state of the art in the development of strategies for generating supramolecular systems for dynamic cell studies. Dynamic systems are crucial to further our understanding of cell biology and are consequently at the heart of many medical applications. Increasing interest has therefore been focused recently on rendering systems bioactive and dynamic that can subsequently be employed to engage with cells. Different approaches using supramolecular chemistry are reviewed with particular emphasis on their application in cell studies. We conclude with an outlook on future challenges for dynamic cell research and applications.
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Affiliation(s)
- Jenny Brinkmann
- MESA+ Institute for Nanotechnology and Department of Science and Technology, Laboratory Group of Bioinspired Molecular Engineering, University of Twente, P.O. Box 217, 7500 AE, Enschede, The Netherlands.
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9
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Krachler AM, Orth K. Targeting the bacteria-host interface: strategies in anti-adhesion therapy. Virulence 2014; 4:284-94. [PMID: 23799663 PMCID: PMC3710331 DOI: 10.4161/viru.24606] [Citation(s) in RCA: 158] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Bacterial infections are a major cause of morbidity and mortality worldwide and are increasingly problematic to treat due to the rise in antibiotic-resistant strains. It becomes more and more challenging to develop new antimicrobials that are able to withstand the ever-increasing repertoire of bacterial resistance mechanisms. This necessitates the development of alternative approaches to prevent and treat bacterial infections. One of the first steps during bacterial infection is adhesion of the pathogen to host cells. A pathogen’s ability to colonize and invade host tissues strictly depends on this process. Thus, interference with adhesion (anti-adhesion therapy) is an efficient way to prevent or treat bacterial infections. As a basis to present different strategies to interfere with pathogen adhesion, this review briefly introduces general concepts of bacterial attachment to host cells. We further discuss advantages and disadvantages of anti-adhesion treatments and issues that are in need of improvement so as to make anti-adhesion compounds a more broadly applicable alternative to conventional antimicrobials.
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Affiliation(s)
- Anne Marie Krachler
- Institute of Microbiology and Infection, University of Birmingham, Birmingham, UK
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10
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Ulrich S, Dumy P. Probing secondary interactions in biomolecular recognition by dynamic combinatorial chemistry. Chem Commun (Camb) 2014; 50:5810-25. [DOI: 10.1039/c4cc00263f] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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11
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Huang X, Hu F, Su H. Facile Syntheses of Cucurbit[6]uril-Anchored Polymers and Their Noncovalent Modification. Macromolecules 2013. [DOI: 10.1021/ma400017y] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Xiaoling Huang
- School of
Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot, 010021, China
| | - Fanglin Hu
- School of
Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot, 010021, China
| | - Haiquan Su
- School of
Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot, 010021, China
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12
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Wang KR, Wang YQ, An HW, Zhang JC, Li XL. A Triazatruxene-Based Glycocluster as a Fluorescent Sensor for Concanavalin A. Chemistry 2013; 19:2903-9. [DOI: 10.1002/chem.201200905] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2012] [Revised: 11/02/2012] [Indexed: 01/06/2023]
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13
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Petkau-Milroy K, Brunsveld L. Supramolecular chemical biology; bioactive synthetic self-assemblies. Org Biomol Chem 2013; 11:219-32. [DOI: 10.1039/c2ob26790j] [Citation(s) in RCA: 92] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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14
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Lee DW, Kim T, Park IS, Huang Z, Lee M. Multivalent Nanofibers of a Controlled Length: Regulation of Bacterial Cell Agglutination. J Am Chem Soc 2012; 134:14722-5. [DOI: 10.1021/ja306802m] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Dong-Woo Lee
- Center for
Bio-Responsive Assembly and Department of
Chemistry, Seoul National University, 1
Gwanak-ro, Gwanak-gu, Seoul 151-747, Korea
| | - Taehoon Kim
- Center for
Bio-Responsive Assembly and Department of
Chemistry, Seoul National University, 1
Gwanak-ro, Gwanak-gu, Seoul 151-747, Korea
| | - Il-Soo Park
- Center for
Bio-Responsive Assembly and Department of
Chemistry, Seoul National University, 1
Gwanak-ro, Gwanak-gu, Seoul 151-747, Korea
| | - Zhegang Huang
- Center for
Bio-Responsive Assembly and Department of
Chemistry, Seoul National University, 1
Gwanak-ro, Gwanak-gu, Seoul 151-747, Korea
| | - Myongsoo Lee
- Center for
Bio-Responsive Assembly and Department of
Chemistry, Seoul National University, 1
Gwanak-ro, Gwanak-gu, Seoul 151-747, Korea
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15
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Host–guest inclusion complexes of viologen derivative and tetramethyl cucurbit[6]uril with multiple interaction models. Chem Phys Lett 2011. [DOI: 10.1016/j.cplett.2011.08.065] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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16
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Hartmann M, Lindhorst TK. The Bacterial Lectin FimH, a Target for Drug Discovery – Carbohydrate Inhibitors of Type 1 Fimbriae‐Mediated Bacterial Adhesion. European J Org Chem 2011. [DOI: 10.1002/ejoc.201100407] [Citation(s) in RCA: 146] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Mirja Hartmann
- Otto Diels Institute of Organic Chemistry, Christiana Albertina University of Kiel Otto‐Hahn‐Platz 3/4, 24098 Kiel, Germany, Fax: +49‐431‐880‐7410
| | - Thisbe K. Lindhorst
- Otto Diels Institute of Organic Chemistry, Christiana Albertina University of Kiel Otto‐Hahn‐Platz 3/4, 24098 Kiel, Germany, Fax: +49‐431‐880‐7410
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17
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Stöhr T, Blaudszun AR, Steinfeld U, Wenz G. Synthesis of glycosylated peptides by NCA polymerization for recognition of human T-cells. Polym Chem 2011. [DOI: 10.1039/c1py00187f] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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