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Kovács B, Földes T, Szabó M, Dorkó É, Kótai B, Laczkó G, Holczbauer T, Domján A, Pápai I, Soós T. Illuminating the multiple Lewis acidity of triaryl-boranes via atropisomeric dative adducts. Chem Sci 2024:d4sc00925h. [PMID: 39257854 PMCID: PMC11382148 DOI: 10.1039/d4sc00925h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2024] [Accepted: 08/23/2024] [Indexed: 09/12/2024] Open
Abstract
Using the principle that constrained conformational spaces can generate novel and hidden molecular properties, we challenged the commonly held perception that a single-centered Lewis acid reacting with a single-centered Lewis base always forms a single Lewis adduct. Accordingly, the emergence of single-centered but multiple Lewis acidity among sterically hindered and non-symmetric triaryl-boranes is reported. These Lewis acids feature several diastereotopic faces providing multiple binding sites at the same Lewis acid center in the interaction with Lewis bases giving rise to adducts with diastereomeric structures. We demonstrate that with a proper choice of the base, atropisomeric adduct species can be formed that interconvert via the dissociative mechanism rather than conformational isomerism. The existence of this exotic and peculiar molecular phenomenon was experimentally confirmed by the formation of atropisomeric piperidine-borane adducts using state-of-the-art NMR techniques in combination with computational methods.
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Affiliation(s)
- Benjámin Kovács
- Centre for Structural Science, HUN-REN Research Centre for Natural Sciences Magyar tudósok körútja 2 H-1117 Budapest Hungary
| | - Tamás Földes
- Institute of Organic Chemistry, HUN-REN Research Centre for Natural Sciences Magyar tudósok körútja 2 H-1117 Budapest Hungary
| | - Márk Szabó
- Centre for Structural Science, HUN-REN Research Centre for Natural Sciences Magyar tudósok körútja 2 H-1117 Budapest Hungary
| | - Éva Dorkó
- Institute of Organic Chemistry, HUN-REN Research Centre for Natural Sciences Magyar tudósok körútja 2 H-1117 Budapest Hungary
| | - Bianka Kótai
- Institute of Organic Chemistry, HUN-REN Research Centre for Natural Sciences Magyar tudósok körútja 2 H-1117 Budapest Hungary
| | - Gergely Laczkó
- Institute of Organic Chemistry, HUN-REN Research Centre for Natural Sciences Magyar tudósok körútja 2 H-1117 Budapest Hungary
- Hevesy György PhD School of Chemistry, Eötvös Loránd University P. O. Box 32 Budapest H-1518 Hungary
| | - Tamás Holczbauer
- Institute of Organic Chemistry, HUN-REN Research Centre for Natural Sciences Magyar tudósok körútja 2 H-1117 Budapest Hungary
| | - Attila Domján
- Centre for Structural Science, HUN-REN Research Centre for Natural Sciences Magyar tudósok körútja 2 H-1117 Budapest Hungary
| | - Imre Pápai
- Institute of Organic Chemistry, HUN-REN Research Centre for Natural Sciences Magyar tudósok körútja 2 H-1117 Budapest Hungary
| | - Tibor Soós
- Institute of Organic Chemistry, HUN-REN Research Centre for Natural Sciences Magyar tudósok körútja 2 H-1117 Budapest Hungary
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2
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O'Donnell F, Wetmore SD, Gerken M. Fluoride-Ion Donor Properties of AsF 5. Inorg Chem 2024; 63:7619-7630. [PMID: 38629175 DOI: 10.1021/acs.inorgchem.3c04143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/30/2024]
Abstract
Arsenic pentafluoride undergoes ligand-induced autoionization in the presence of 1,10-phenanthroline (phen) in a SO2ClF solution to form the donor-stabilized [AsF4(phen)][AsF6] salt. Reacting [AsF4(phen)][AsF6] with the strong Lewis acid SbF5·SO2 yields the mixed arsenic-antimony salt [AsF4(phen)][Sb2F11]. These salts are the first examples of crystallographically characterized donor-stabilized [AsF4]+ cations. The analogous reaction of AsF5 and 2,2'-bipyridine (bipy) does not result in autoionization but leads to the formation of the neutral 2:1 adduct (AsF5)2·bipy. The gas-phase and solution fluoride-ion affinities of [AsF4]+ and [SbF4]+ were calculated, revealing them to be incredibly strong Lewis acids. Density functional theory calculations and natural bond orbital analysis show that significant electron-pair donation from phen to the As center in [AsF4(phen)]+ occurs and quenches the extreme electrophilicity of the [AsF4]+ cation.
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Affiliation(s)
- Felix O'Donnell
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge T1K 3M4, Canada
| | - Stacey D Wetmore
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge T1K 3M4, Canada
| | - Michael Gerken
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge T1K 3M4, Canada
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3
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Komorr P, Olaru M, Hupf E, Mebs S, Beckmann J. Donor Acceptor Complexes between the Chalcogen Fluorides SF
2
, SeF
2
, SeF
4
and TeF
4
and an N‐Heterocyclic Carbene. Chemistry 2022; 28:e202201023. [PMID: 35587690 PMCID: PMC9544779 DOI: 10.1002/chem.202201023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Indexed: 11/12/2022]
Affiliation(s)
- Pascal Komorr
- Institut für Anorganische Chemie und Kristallographie Universität Bremen Leobener Straße 7 28359 Bremen Germany
| | - Marian Olaru
- Institut für Anorganische Chemie und Kristallographie Universität Bremen Leobener Straße 7 28359 Bremen Germany
| | - Emanuel Hupf
- Institut für Anorganische Chemie und Kristallographie Universität Bremen Leobener Straße 7 28359 Bremen Germany
| | - Stefan Mebs
- Institut für Experimentalphysik Freie Universität Berlin Arnimallee 14 14195 Berlin Germany
| | - Jens Beckmann
- Institut für Anorganische Chemie und Kristallographie Universität Bremen Leobener Straße 7 28359 Bremen Germany
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4
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Cironis N, Yuan K, Thomas S, Ingleson MJ. XtalFluor‐E effects the C3‐H sulfenylation of indoles to form di‐indole sulfides. European J Org Chem 2022. [DOI: 10.1002/ejoc.202101394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
| | - Kang Yuan
- University of Edinburgh Chemsitry UNITED KINGDOM
| | - Stephen Thomas
- University of Edinburgh School of Chemistry Joseph Black Building,King's Buildings, West Mains Road EH9 3FJ Edinburgh UNITED KINGDOM
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5
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Liang J, Shi Y, Lu Y, Xu Z, Liu H. Square tetravalent chalcogen bonds in dimeric aggregates: a joint crystallographic survey and theoretical study. CrystEngComm 2022. [DOI: 10.1039/d1ce01364e] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Square tetravalent chalcogen bonds were systematically investigated through a combination of crystal structure analysis and DFT calculations.
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Affiliation(s)
- Jinwei Liang
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, China
| | - Yulong Shi
- Drug Discovery and Design Center, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China
| | - Yunxiang Lu
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, China
| | - Zhijian Xu
- Drug Discovery and Design Center, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China
| | - Honglai Liu
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, China
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6
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Matsumoto K, Gerken M. Recent advances in sulfur tetrafluoride chemistry: syntheses, structures, and applications. Dalton Trans 2021; 50:12791-12799. [PMID: 34499061 DOI: 10.1039/d1dt02704b] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Sulfur and fluorine occupy crucial positions in main group chemistry because these two elements form a variety of compounds with versatile bond modalities and unique functionalities. Among sulfur-fluorine compounds, the importance of SF4 and its derivatives is recognized in the literature. The amphoteric nature of SF4 results in its rich Lewis acidic and basic reactivities; the reactions with F- acceptors and donors yield [SF3]+ and [SF5]- salts, respectively. Lewis basic molecules can also form adducts with SF4via various interaction motifs. The deoxofluorinating properties of SF4 have been used by organic chemists to selectively introduce fluorine atoms in specific substrates, extending also to industrial applications. Although the properties and reactivity of SF4 have been studied since its first synthesis, the recent progress in the SF4-related chemistry is striking, involving various fields of chemistry. In this Frontier article, recent advances, mainly the last ten years, in syntheses and structures of SF4-related compounds including its cationic and anionic derivatives and adducts with Lewis bases are concisely reviewed. Their uses in fundamental and applied inorganic chemistries are also described.
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Affiliation(s)
- Kazuhiko Matsumoto
- Graduate School of Energy Science, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501, Japan.
| | - Michael Gerken
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, Lethbridge, Alberta T1K 3M4, Canada.
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7
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Turnbull D, Chaudhary P, Hazendonk P, Wetmore SD, Gerken M. Chalcogen versus Dative Bonding in [SF 3] + Lewis Acid-Base Adducts: [SF 3(NCCH 3) 2] +, [SF 3(NC 5H 5) 2] +, and [SF 3(phen)] + (phen = 1,10-phenanthroline). Inorg Chem 2021; 60:3893-3901. [PMID: 33606507 DOI: 10.1021/acs.inorgchem.0c03679] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The Lewis-acid behavior of [SF3][MF6] (M = Sb, As) salts toward mono- and bidentate nitrogen bases was explored. Reactions of [SF3][MF6] with excesses of CH3CN and C5H5N yielded [SF3(L)2]+ (L = CH3CN, C5H5N) salts, whereas the reaction of [SF3][SbF6] with equimolar 1,10-phenanthroline (phen) in CH3CN afforded [SF3(phen)][SbF6]·2CH3CN. Salts of these cations were characterized by low-temperature X-ray crystallography and Raman spectroscopy in the solid state as well as by 19F NMR spectroscopy in solution. In the solid state, the geometries of [SF3(NC5H5)2]+ and [SF3(phen)]+ are square pyramids with negligible cation-anion contacts, whereas the coordination of CH3CN and [SbF6]- to [SF3]+ in [SF3(NCCH3)2][SbF6] results in a distorted octahedral coordination sphere with a minimal perturbation of the trigonal-pyramidal SF3 moiety. 19F NMR spectroscopy revealed that [SF3(L)2]+ is fluxional in excess L at -30 °C, whereas [SF3(phen)]+ is rigid in CH2Cl2 at -40 °C. Density functional theory (DFT-B3LYP) calculations suggest that the S-N bonds in [SF3(NC5H5)2]+ and [SF3(phen)]+ possess substantial covalent character and result in a regular AX5E VSEPR geometry, whereas those in [SF3(NCCH3)2]+ are best described as S···N chalcogen-bonding interactions via σ-holes on [SF3]+, which is consistent with the crystallographic data.
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Affiliation(s)
- Douglas Turnbull
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, Lethbridge, Alberta T1K 3M4, Canada
| | - Praveen Chaudhary
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, Lethbridge, Alberta T1K 3M4, Canada
| | - Paul Hazendonk
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, Lethbridge, Alberta T1K 3M4, Canada
| | - Stacey D Wetmore
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, Lethbridge, Alberta T1K 3M4, Canada
| | - Michael Gerken
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, Lethbridge, Alberta T1K 3M4, Canada
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8
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Abstract
The heavier chalcogen atoms S, Se, and Te can each participate in a range of different noncovalent interactions. They can serve as both proton donor and acceptor in H-bonds. Each atom can also act as electron acceptor in a chalcogen bond.
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Affiliation(s)
- Steve Scheiner
- Department of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322-0300, USA
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9
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Reactions of Molybdenum and Tungsten Oxide Tetrafluoride with Sulfur(IV) Lewis Bases: Structure and Bonding in [WOF 4] 4, MOF 4(OSO), and [SF 3][M 2O 2F 9] (M = Mo, W). Inorg Chem 2020; 59:17544-17554. [PMID: 33200611 DOI: 10.1021/acs.inorgchem.0c02783] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The structure of [WOF4]4 has been reinvestigated by low-temperature X-ray crystallography and DFT (MN15/def2-SVPD) studies. Whereas the W4F4 ring of the tetramer is planar and disordered in the solid state, the optimized gas-phase geometry prefers a disphenoidally puckered W4F4 ring and demonstrates asymmetric fluorine bridging. Dissolution of MOF4 (M = Mo, W) in SO2 and SF4 results in the formation of MOF4(OSO) and [SF3][M2O2F9], respectively. Both SO2 adducts and [SF3][Mo2O2F9] have been characterized by X-ray crystallography. The crystal structure of [SF3][Mo2O2F9] reveals dimerization of the ion pair that results in a rare heptacoordinate sulfur center. Optimization of the {[SF3][M2O2F9]}2 dimers in the gas phase, however, results in the elongation of one contact such that the sulfur centers are effectively hexacoordinate. Meanwhile, the crystal structure of [SF3][W2O2F9]·HF instead demonstrates hexacoordinate sulfur centers and a highly unusual coordination to [SF3]+ from [W2O2F9]- through an oxido ligand. While [SF3][W2O2F9] does not decompose at ambient temperature, MOF4(OSO) and [SF3][Mo2O2F9] are unstable toward evolution of SO2 or SF4. Computational studies reveal that the monomerization of [WOF4]4 in the gas phase at 25 °C is thermodynamically unfavorable using SO2, but favorable using SF4, consistent with the relative thermal stabilities of WOF4(OSO) and [SF3][W2O2F9].
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10
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Kostiuk N, Goettel JT, Gerken M. Synthesis and Characterization of SF4 Adducts with Polycyclic Amines. Inorg Chem 2020; 59:8620-8628. [PMID: 32441932 DOI: 10.1021/acs.inorgchem.0c01105] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Nathan Kostiuk
- Canadian Centre for Research in Advanced Fluorine Technologies, University of Lethbridge, 4401 University Drive West, Lethbridge, Alberta T1K 3M4, Canada
- Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge, Alberta T1K 3M4, Canada
| | - James T. Goettel
- Canadian Centre for Research in Advanced Fluorine Technologies, University of Lethbridge, 4401 University Drive West, Lethbridge, Alberta T1K 3M4, Canada
- Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge, Alberta T1K 3M4, Canada
| | - Michael Gerken
- Canadian Centre for Research in Advanced Fluorine Technologies, University of Lethbridge, 4401 University Drive West, Lethbridge, Alberta T1K 3M4, Canada
- Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge, Alberta T1K 3M4, Canada
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11
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Dirican D, Pfister N, Wozniak M, Braun T. Reactivity of Binary and Ternary Sulfur Halides towards Transition-Metal Compounds. Chemistry 2020; 26:6945-6963. [PMID: 31840851 PMCID: PMC7318666 DOI: 10.1002/chem.201904493] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Indexed: 11/23/2022]
Abstract
Binary sulfur fluorides exhibit an interesting reactivity towards transition metal complexes. They open up routes for the generation of sulfur‐containing building blocks. Often ligands with particular properties can be constructed. This includes their ability to transfer sulfur atoms or polysulfide units as well as fluorination reactions. This Minireview provides an insight into the reactivity of the binary and ternary sulfur halides S2Cl2, SCl2, SF4, SF6 and SF5Cl towards transition‐metal compounds.
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Affiliation(s)
- Dilcan Dirican
- Humboldt-Universität zu Berlin, Institut für Chemie, Brook-Taylor-Strasse 2, 12489, Berlin, Germany
| | - Nils Pfister
- Humboldt-Universität zu Berlin, Institut für Chemie, Brook-Taylor-Strasse 2, 12489, Berlin, Germany
| | - Martin Wozniak
- Humboldt-Universität zu Berlin, Institut für Chemie, Brook-Taylor-Strasse 2, 12489, Berlin, Germany
| | - Thomas Braun
- Humboldt-Universität zu Berlin, Institut für Chemie, Brook-Taylor-Strasse 2, 12489, Berlin, Germany
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12
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Zierkiewicz W, Wysokiński R, Michalczyk M, Scheiner S. Chalcogen bonding of two ligands to hypervalent YF 4 (Y = S, Se, Te, Po). Phys Chem Chem Phys 2019; 21:20829-20839. [PMID: 31517347 DOI: 10.1039/c9cp04006d] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The ability of two NH3 ligands to engage in simultaneous chalcogen bonds to a hypervalent YF4 molecule, with Y = S, Se, Te, Po, is assessed via quantum calculations. The complex can take on one of two different geometries. The cis structure places the two ligands adjacent to one another in a pseudo-octahedral geometry, held there by a pair of σ-hole chalcogen bonds. The bases can also lie nearly opposite one another, in a distorted octahedron containing one π-hole and one strained σ-hole bond. The cis geometry is favored for Y = S, while Te, and Po tend toward the trans structure; they are nearly equally stable for Se. In either case, the binding energy rises rapidly with the size of the Y atom, exceeding 30 kcal mol-1 for PoF4.
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Affiliation(s)
- Wiktor Zierkiewicz
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.
| | - Rafał Wysokiński
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.
| | - Mariusz Michalczyk
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.
| | - Steve Scheiner
- Department of Chemistry and Biochemistry, Utah State University Logan, Utah 84322-0300, USA.
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13
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Lu J, Scheiner S. Effects of Halogen, Chalcogen, Pnicogen, and Tetrel Bonds on IR and NMR Spectra. Molecules 2019; 24:E2822. [PMID: 31382402 PMCID: PMC6696224 DOI: 10.3390/molecules24152822] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Revised: 07/25/2019] [Accepted: 07/31/2019] [Indexed: 11/22/2022] Open
Abstract
Complexes were formed pairing FX, FHY, FH2Z, and FH3T (X = Cl, Br, I; Y = S, Se, Te; Z = P, As, Sb; T = Si, Ge, Sn) with NH3 in order to form an A⋯N noncovalent bond, where A refers to the central atom. Geometries, energetics, atomic charges, and spectroscopic characteristics of these complexes were evaluated via DFT calculations. In all cases, the A-F bond, which is located opposite the base and is responsible for the σ-hole on the A atom, elongates and its stretching frequency undergoes a shift to the red. This shift varies from 42 to 175 cm-1 and is largest for the halogen bonds, followed by chalcogen, tetrel, and then pnicogen. The shift also decreases as the central A atom is enlarged. The NMR chemical shielding of the A atom is increased while that of the F and electron donor N atom are lowered. Unlike the IR frequency shifts, it is the third-row A atoms that undergo the largest change in NMR shielding. The change in shielding of A is highly variable, ranging from negligible for FSnH3 all the way up to 1675 ppm for FBr, while those of the F atom lie in the 55-422 ppm range. Although smaller in magnitude, the changes in the N shielding are still easily detectable, between 7 and 27 ppm.
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Affiliation(s)
- Jia Lu
- Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322-0300, USA
| | - Steve Scheiner
- Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322-0300, USA.
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14
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Levason W, Monzittu FM, Reid G. Coordination chemistry and applications of medium/high oxidation state metal and non-metal fluoride and oxide-fluoride complexes with neutral donor ligands. Coord Chem Rev 2019. [DOI: 10.1016/j.ccr.2019.04.005] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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15
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Scilabra P, Terraneo G, Resnati G. The Chalcogen Bond in Crystalline Solids: A World Parallel to Halogen Bond. Acc Chem Res 2019; 52:1313-1324. [PMID: 31082186 DOI: 10.1021/acs.accounts.9b00037] [Citation(s) in RCA: 250] [Impact Index Per Article: 50.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The distribution of the electron density around covalently bonded atoms is anisotropic, and this determines the presence, on atoms surface, of areas of higher and lower electron density where the electrostatic potential is frequently negative and positive, respectively. The ability of positive areas on atoms to form attractive interactions with electron rich sites became recently the subject of a flurry of papers. The halogen bond (HaB), the attractive interaction formed by halogens with nucleophiles, emerged as a quite common and dependable tool for controlling phenomena as diverse as the binding of small molecules to proteinaceous targets or the organization of molecular functional materials. The mindset developed in relation to the halogen bond prompted the interest in the tendency of elements of groups 13-16 of the periodic table to form analogous attractive interactions with nucleophiles. This Account addresses the chalcogen bond (ChB), the attractive interaction formed by group 16 elements with nucleophiles, by adopting a crystallographic point of view. Structures of organic derivatives are considered where chalcogen atoms form close contacts with nucleophiles in the geometry typical for chalcogen bonds. It is shown how sulfur, selenium, and tellurium can all form chalcogen bonds, the tendency to give rise to close contacts with nucleophiles increasing with the polarizability of the element. Also oxygen, when conveniently substituted, can form ChBs in crystalline solids. Chalcogen bonds can be strong enough to allow for the interaction to function as an effective and robust tool in crystal engineering. It is presented how chalcogen containing heteroaromatics, sulfides, disulfides, and selenium and tellurium analogues as well as some other molecular moieties can afford dependable chalcogen bond based supramolecular synthons. Particular attention is given to chalcogen containing azoles and their derivatives due to the relevance of these moieties in biosystems and molecular materials. It is shown how the interaction pattern around electrophilic chalcogen atoms frequently recalls the pattern around analogous halogen, pnictogen, and tetrel derivatives. For instance, directionalities of chalcogen bonds around sulfur and selenium in some thiazolium and selenazolium derivatives are similar to directionalities of halogen bonds around bromine and iodine in bromonium and iodonium compounds. This gives experimental evidence that similarities in the anisotropic distribution of the electron density in covalently bonded atoms translates in similarities in their recognition and self-assembly behavior. For instance, the analogies in interaction patterns of carbonitrile substituted elements of groups 17, 16, 15, and 14 will be presented. While the extensive experimental and theoretical data available in the literature prove that HaB and ChB form twin supramolecular synthons in the solid, more experimental information has to become available before such a statement can be safely extended to interactions wherein elements of groups 14 and 15 are the electrophiles. It will nevertheless be possible to develop some general heuristic principles for crystal engineering. Being based on the groups of the periodic table, these principles offer the advantage of being systematic.
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Affiliation(s)
- Patrick Scilabra
- Department of Chemistry, Materials, and Chemical Engineering ’’Giulio Natta’’, Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy
| | - Giancarlo Terraneo
- Department of Chemistry, Materials, and Chemical Engineering ’’Giulio Natta’’, Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy
| | - Giuseppe Resnati
- Department of Chemistry, Materials, and Chemical Engineering ’’Giulio Natta’’, Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy
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16
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Dependence of NMR chemical shifts upon CH bond lengths of a methyl group involved in a tetrel bond. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2018.10.069] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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17
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Franconetti A, Quiñonero D, Frontera A, Resnati G. Unexpected chalcogen bonds in tetravalent sulfur compounds. Phys Chem Chem Phys 2019; 21:11313-11319. [DOI: 10.1039/c9cp01033e] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Combined CSD analysis and theoretical calculations show the importance of the polarizability in chalcogen bonding interactions. We provide evidence that the Lewis base has a preference in some cases for the σ-hole that is opposite to the more polarizable group instead of the more electron withdrawing one.
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Affiliation(s)
- Antonio Franconetti
- Department of Chemistry
- Universitat de les Illes Balears
- 07122 Palma (Baleares)
- Spain
| | - David Quiñonero
- Department of Chemistry
- Universitat de les Illes Balears
- 07122 Palma (Baleares)
- Spain
| | - Antonio Frontera
- Department of Chemistry
- Universitat de les Illes Balears
- 07122 Palma (Baleares)
- Spain
| | - Giuseppe Resnati
- Laboratory of Nanostructured Fluorinated Materials (NFMLab)
- Department of Chemistry
- Materials and Chemical Engineering “Giulio Natta”
- Politecnico di Milano
- 20131 Milano
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18
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Goettel JT, Mercier HP, Schrobilgen GJ. XeO3 adducts of pyridine, 4-dimethylaminopyridine, and their pyridinium salts. J Fluor Chem 2018. [DOI: 10.1016/j.jfluchem.2018.03.004] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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19
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Scheiner S, Lu J. Halogen, Chalcogen, and Pnicogen Bonding Involving Hypervalent Atoms. Chemistry 2018; 24:8167-8177. [DOI: 10.1002/chem.201800511] [Citation(s) in RCA: 52] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2018] [Indexed: 01/15/2023]
Affiliation(s)
- Steve Scheiner
- Department of Chemistry and Biochemistry; Utah State University; Logan UT 84322-0300 USA
| | - Jia Lu
- Department of Chemistry and Biochemistry; Utah State University; Logan UT 84322-0300 USA
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20
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Mahmudov KT, Kopylovich MN, Guedes da Silva MFC, Pombeiro AJL. Chalcogen bonding in synthesis, catalysis and design of materials. Dalton Trans 2018; 46:10121-10138. [PMID: 28686248 DOI: 10.1039/c7dt01685a] [Citation(s) in RCA: 276] [Impact Index Per Article: 46.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Chalcogen bonding is a type of noncovalent interaction in which a covalently bonded chalcogen atom (O, S, Se or Te) acts as an electrophilic species towards a nucleophilic (negative) region(s) in another or in the same molecule. In general, this interaction is strengthened by the presence of an electron-withdrawing group on the electron-acceptor chalcogen atom and upon moving down in the periodic table of elements, from O to Te. Following a short discussion of the phenomenon of chalcogen bonding, this Perspective presents some demonstrative experimental observations in which this bonding is crucial for synthetic transformations, crystal engineering, catalysis and design of materials as synthons/tectons.
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Affiliation(s)
- Kamran T Mahmudov
- Centro de Química Estrutural, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal. and Department of Chemistry, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan and Organic Chemistry Department, RUDN University, 6 Miklukho-Maklaya str., Moscow 117198, Russian Federation
| | - Maximilian N Kopylovich
- Centro de Química Estrutural, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal.
| | - M Fátima C Guedes da Silva
- Centro de Química Estrutural, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal.
| | - Armando J L Pombeiro
- Centro de Química Estrutural, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal.
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21
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Tsao FA, Waked AE, Cao L, Hofmann J, Liu L, Grimme S, Stephan DW. S(vi) Lewis acids: fluorosulfoxonium cations. Chem Commun (Camb) 2018; 52:12418-12421. [PMID: 27711343 DOI: 10.1039/c6cc06929k] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Avenues to S-based Lewis acids were developed via the oxidation of aryl-sulfoxides with XeF2, giving difluorodiarylsulfoxides which react via fluoride abstraction to afford Lewis acidic fluorosulfoxonium cations; this acidity is derived from the S-F σ* orbital and has been probed both experimentally and computationally.
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Affiliation(s)
- Fu An Tsao
- Department of Chemistry, University of Toronto, 80 St. George St, Toronto, Ontario, CanadaM5S 3H6.
| | - Alexander E Waked
- Department of Chemistry, University of Toronto, 80 St. George St, Toronto, Ontario, CanadaM5S 3H6.
| | - Levy Cao
- Department of Chemistry, University of Toronto, 80 St. George St, Toronto, Ontario, CanadaM5S 3H6.
| | - Jordan Hofmann
- Department of Chemistry, University of Toronto, 80 St. George St, Toronto, Ontario, CanadaM5S 3H6.
| | - Lei Liu
- Mulliken Center for Theoretical Chemistry, Institut fuer Physikalische und Theoretische Chemie, Universitaet Bonn, Beringstrasse 4, D-53115 Bonn, Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Institut fuer Physikalische und Theoretische Chemie, Universitaet Bonn, Beringstrasse 4, D-53115 Bonn, Germany
| | - Douglas W Stephan
- Department of Chemistry, University of Toronto, 80 St. George St, Toronto, Ontario, CanadaM5S 3H6.
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22
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Goettel JT, Gerken M. Synthesis and Characterization of Adducts between SF 4 and Oxygen Bases: Examples of O···S(IV) Chalcogen Bonding. Inorg Chem 2016; 55:12441-12450. [PMID: 27934407 DOI: 10.1021/acs.inorgchem.6b02373] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Lewis acid-base adducts between SF4 and the oxygen bases tetrahydrofuran, cyclopentanone, and 1,2-dimethoxyethane were synthesized and characterized by Raman spectroscopy and X-ray crystallography. Crystal structures of (SF4·OC4H8)2, SF4·(OC4H8)2, SF4·CH3OC2H4OCH3, and SF4·(O═C5H8)2 show weak S···O chalcogen bonding interactions ranging from 2.662(2) to 2.8692(9) Å. Caffeine, which has three Lewis basic sites, was reacted with SF4 and one aliquot of HF forming C8H10N4O2·2SF4·HF, which was also characterized by X-ray crystallography. Density functional theory calculations aided in the assignment of the vibrational spectra of (SF4·OC4H8)2, SF4·(OC4H8)2, SF4·CH3OC2H4OCH3, and SF4·(O═C5H8)2. Bonding was studied by natural bond order and the quantum theory of atoms in molecules analyses.
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Affiliation(s)
- James T Goettel
- The Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge , Lethbridge, Alberta T1K 3M4, Canada
| | - Michael Gerken
- The Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge , Lethbridge, Alberta T1K 3M4, Canada
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23
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Goettel JT, Kostiuk N, Gerken M. Interactions between SF4 and Fluoride: A Crystallographic Study of Solvolysis Products of SF4·Nitrogen-Base Adducts by HF. Inorg Chem 2016; 55:7126-34. [DOI: 10.1021/acs.inorgchem.6b01112] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- James T. Goettel
- Department
of Chemistry and Biochemistry and Canadian
Centre for Research in Advanced Fluorine Technologies, University of Lethbridge, Lethbridge, Alberta T1K 3M4, Canada
| | - Nathan Kostiuk
- Department
of Chemistry and Biochemistry and Canadian
Centre for Research in Advanced Fluorine Technologies, University of Lethbridge, Lethbridge, Alberta T1K 3M4, Canada
| | - Michael Gerken
- Department
of Chemistry and Biochemistry and Canadian
Centre for Research in Advanced Fluorine Technologies, University of Lethbridge, Lethbridge, Alberta T1K 3M4, Canada
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24
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Ho PC, Szydlowski P, Sinclair J, Elder PJW, Kübel J, Gendy C, Lee LM, Jenkins H, Britten JF, Morim DR, Vargas-Baca I. Supramolecular macrocycles reversibly assembled by Te(…)O chalcogen bonding. Nat Commun 2016; 7:11299. [PMID: 27090355 PMCID: PMC4838886 DOI: 10.1038/ncomms11299] [Citation(s) in RCA: 141] [Impact Index Per Article: 17.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2015] [Accepted: 03/11/2016] [Indexed: 12/25/2022] Open
Abstract
Organic molecules with heavy main-group elements frequently form supramolecular links to electron-rich centres. One particular case of such interactions is halogen bonding. Most studies of this phenomenon have been concerned with either dimers or infinitely extended structures (polymers and lattices) but well-defined cyclic structures remain elusive. Here we present oligomeric aggregates of heterocycles that are linked by chalcogen-centered interactions and behave as genuine macrocyclic species. The molecules of 3-methyl-5-phenyl-1,2-tellurazole 2-oxide assemble a variety of supramolecular aggregates that includes cyclic tetramers and hexamers, as well as a helical polymer. In all these aggregates, the building blocks are connected by Te(…)O-N bridges. Nuclear magnetic resonance spectroscopic experiments demonstrate that the two types of annular aggregates are persistent in solution. These self-assembled structures form coordination complexes with transition-metal ions, act as fullerene receptors and host small molecules in a crystal.
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Affiliation(s)
- Peter C Ho
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Patrick Szydlowski
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Jocelyn Sinclair
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Philip J W Elder
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Joachim Kübel
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Chris Gendy
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Lucia Myongwon Lee
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Hilary Jenkins
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - James F Britten
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Derek R Morim
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Ignacio Vargas-Baca
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
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25
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Nziko VDPN, Scheiner S. S···π Chalcogen Bonds between SF2 or SF4 and C–C Multiple Bonds. J Phys Chem A 2015; 119:5889-97. [DOI: 10.1021/acs.jpca.5b03359] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Vincent de Paul N. Nziko
- Department of Chemistry and
Biochemistry Utah State University, Logan, Utah 84322-0300, United States
| | - Steve Scheiner
- Department of Chemistry and
Biochemistry Utah State University, Logan, Utah 84322-0300, United States
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