1
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Pinetre C, van Dongen SW, Brandel C, Léonard AS, Charpentier MD, Dupray V, Oosterling K, Kaptein B, Leeman M, Kellogg RM, ter Horst JH, Noorduin WL. Enantiopurity by Directed Evolution of Crystal Stabilities and Nonequilibrium Crystallization. J Am Chem Soc 2025; 147:8864-8870. [PMID: 39995179 PMCID: PMC11912332 DOI: 10.1021/jacs.5c00569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2025] [Revised: 02/13/2025] [Accepted: 02/14/2025] [Indexed: 02/26/2025]
Abstract
Crystallization is a powerful method to isolate enantiopure molecules from racemates if enantiomers self-sort into separate enantiopure crystals. Unfortunately, this behavior is unpredictable and rare (5-10%), as both enantiomers predominantly crystallize together to form racemic crystals, hindering any such chiral sorting. These unfavorable statistics might be overcome using nonequilibrium conditions. Therefore, we systematically characterize energy differences (ΔGΦ) between racemic and enantiopure crystal phases for libraries of target molecules (phenylglycine, praziquantel) with different chemical modifications. Surprisingly, these libraries reveal wide but similar continuous distributions of ΔGΦ, wherein similar chemical modifications group together. This grouping allows a directed evolution strategy to discover racemic crystals with low ΔGΦ for isolating desired enantiomers by crystallization under nonequilibrium conditions. Comparison with over a hundred previously reported compounds suggests that as many as half of all chiral molecules may kinetically form enantiopure crystals (∼50%). These insights open new previously unconsidered possibilities for isolating enantiopure molecules.
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Affiliation(s)
- Clément Pinetre
- Univ Rouen
Normandie, Normandie Univ, SMS, UR 3233, Rouen F-76000, France
| | | | - Clément Brandel
- Univ Rouen
Normandie, Normandie Univ, SMS, UR 3233, Rouen F-76000, France
| | | | - Maxime D. Charpentier
- EPSRC
Future
Continuous Manufacturing and Advanced Crystallisation Research Hub,
c/o Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow G1 1RD, U.K.
| | - Valérie Dupray
- Univ Rouen
Normandie, Normandie Univ, SMS, UR 3233, Rouen F-76000, France
| | | | | | - Michel Leeman
- Symeres, Kadijk 3, Groningen 9747
AT, The Netherlands
| | - Richard M. Kellogg
- Kellogg
Beheer B.V., Zernikepark
12, Unit 1.31, Groningen 9747 AN, The Netherlands
| | - Joop H. ter Horst
- EPSRC
Future
Continuous Manufacturing and Advanced Crystallisation Research Hub,
c/o Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow G1 1RD, U.K.
- Tiofarma, Hermanus Boerhaavestraat 1, Oud-Beijerland 3261 ME, The Netherlands
| | - Willem L. Noorduin
- AMOLF, Science Park 104, Amsterdam 1098 XG, The Netherlands
- Van‘t
Hoff Institute for Molecular Sciences, University
of Amsterdam, Science
Park 904, Amsterdam 1090
GD, The Netherlands
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2
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Hosseinalipour M, Deck LT, Mazzotti M. On Solute Recovery and Productivity in Chiral Resolution through Solid-State Deracemization by Temperature Cycling. CRYSTAL GROWTH & DESIGN 2024; 24:3925-3932. [PMID: 38708369 PMCID: PMC11066838 DOI: 10.1021/acs.cgd.4c00233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Revised: 03/14/2024] [Accepted: 03/14/2024] [Indexed: 05/07/2024]
Abstract
Temperature cycling represents an effective means for the deracemization of chiral compounds that crystallize as conglomerates and racemize in solution. In such a process, a suspension enriched in the desired enantiomer is converted into an enantiopure one through periodic cycles of crystal dissolution and crystal growth. We show that performing temperature cycling at higher temperatures leads to faster deracemization and, consequently, higher productivity. However, this comes at the cost of lower recovery, as the solution contains potentially relevant amounts of solute due to the higher solubility at an elevated temperature. In this work, we introduce and compare two process variants that mitigate this issue. The first involves temperature cycling, followed by linear cooling, whereas the second is based on merging the temperature cycles and cooling crystallization. Experiments carried out with the chiral compound N-(2-methylbenzylidene)-phenylglycine amide show that the former variant is faster than the latter, and it is easier to design and implement. In this process, the choice of an appropriate cooling rate is essential to avoid nucleation of the undesired enantiomer.
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Affiliation(s)
| | - Leif-Thore Deck
- Institute of Energy and Process Engineering, ETH Zurich, 8092 Zurich, Switzerland
| | - Marco Mazzotti
- Institute of Energy and Process Engineering, ETH Zurich, 8092 Zurich, Switzerland
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3
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Oketani R, Shiohara K, Hisaki I. Overcoming a solid solution system on chiral resolution: combining crystallization and enantioselective dissolution. Chem Commun (Camb) 2023; 59:6175-6178. [PMID: 37096325 DOI: 10.1039/d3cc01352a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2023]
Abstract
Chiral resolution of rac-4-cyano-1-aminoindane, a key intermediate of ozanimod, was successfully achieved through a combination of crystallization and enantioselective dissolution with up to 96% ee. The disastereomeric salt with di-p-toluoyl-L-tartaric acid was characterized by the construction of a binary phase diagram and ternary isotherm. Enantioselective dissolution was then employed to further enrich the enantiomer.
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Affiliation(s)
- Ryusei Oketani
- Division of Chemistry, Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan.
| | - Koki Shiohara
- Division of Chemistry, Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan.
| | - Ichiro Hisaki
- Division of Chemistry, Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan.
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4
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Charpentier MD, Venkatramanan R, Rougeot C, Leyssens T, Johnston K, ter Horst JH. Multicomponent Chiral Quantification with Ultraviolet Circular Dichroism Spectroscopy: Ternary and Quaternary Phase Diagrams of Levetiracetam. Mol Pharm 2023; 20:616-629. [PMID: 36468979 PMCID: PMC9811458 DOI: 10.1021/acs.molpharmaceut.2c00825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2022]
Abstract
Chiral molecules are challenging for the pharmaceutical industry because although physical properties of the enantiomers are the same in achiral systems, they exhibit different effects in chiral systems, such as the human body. The separation of enantiomers is desired but complex, as enantiomers crystallize most often as racemic compounds. A technique to enable the chiral separation of racemic compounds is to create an asymmetry in the thermodynamic system by generating chiral cocrystal(s) using a chiral coformer and using the solubility differences to enable separation through crystallization from solution. However, such quaternary systems are complex and require analytical methods to quantify different chiral molecules in solution. Here, we develop a new chiral quantification method using ultraviolet-circular dichroism spectroscopy and multivariate partial least squares calibration models, to build multicomponent chiral phase diagrams. Working on the quaternary system of (R)- and (S)-2-(2-oxopyrrolidin-1-yl)butanamide enantiomers with (S)-mandelic acid in acetonitrile, we measure accurately the full quaternary phase diagram for the first time. By understanding the phase stabilities of the racemic compound and the enantiospecific cocrystal, the chiral resolution of levetiracetam could be designed due to a large asymmetry in overall solubility between both sides of the racemic composition. This new method offers improvements for chiral molecule quantification in complex multicomponent chiral systems and can be applied to other chiral spectroscopy techniques.
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Affiliation(s)
- Maxime D. Charpentier
- EPSRC
Centre for Innovative Manufacturing in Continuous Manufacturing and
Crystallization (CMAC), University of Strathclyde,
Technology and Innovation Centre, 99 George Street, GlasgowG1 1RD, U.K.,
| | - Raghunath Venkatramanan
- EPSRC
Centre for Innovative Manufacturing in Continuous Manufacturing and
Crystallization (CMAC), University of Strathclyde,
Technology and Innovation Centre, 99 George Street, GlasgowG1 1RD, U.K.
| | - Céline Rougeot
- UCB
Pharma SA, chemin du Foriest, 1420 Braine-L’Alleud, Brussels1070, Belgium
| | - Tom Leyssens
- Institute
of Condensed Matter and Nanosciences, UCLouvain, Place L. Pasteur 1, Brussels1070, Belgium
| | - Karen Johnston
- Department
of Chemical and Process Engineering, University
of Strathclyde, James Weir Building, 75 Montrose Street, GlasgowG1 1XJ, U.K.
| | - Joop H. ter Horst
- EPSRC
Centre for Innovative Manufacturing in Continuous Manufacturing and
Crystallization (CMAC), University of Strathclyde,
Technology and Innovation Centre, 99 George Street, GlasgowG1 1RD, U.K.,Laboratoire
Sciences et Méthodes Séparatives (SMS), Univ Rouen Normandie, UR 3233, F-76000Rouen, France
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5
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Bodák B, Breveglieri F, Mazzotti M. On the model-based design and comparison of crystallization-based deracemization techniques. Chem Eng Sci 2022. [DOI: 10.1016/j.ces.2022.117595] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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6
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Bodák B, Breveglieri F, Mazzotti M. Crystallization-Induced Deracemization: Experiments and Modeling. CRYSTAL GROWTH & DESIGN 2022; 22:1427-1436. [PMID: 35140549 PMCID: PMC8815077 DOI: 10.1021/acs.cgd.1c01374] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 12/21/2021] [Indexed: 06/14/2023]
Abstract
Inspired by deracemization via temperature cycles, which enables the collection of crystals of the desired enantiomer from an initially racemic mixture, we focus in this work on an alternative batch process, namely crystallization-induced deracemization. This process starts with a suspension of enantiomerically pure crystals, which undergoes a simple cooling crystallization, coupled with liquid-phase racemization. The experimental and model-based analysis of such a process, carried out here, revealed that: (i) deracemization via temperature cycles is a safe choice to operate with high enantiomeric purity, although its throughput is limited by the suspension density; (ii) if the distomer is less prone to nucleation, crystallization-induced deracemization is a simple process; however, its performance is strongly limited by the solubility; (iii) the purity achieved with crystallization-induced deracemization can be increased by utilizing large seed mass and by optimizing the cooling profile or catalyst concentration. Alternatively, the purity increases via partial dissolution of the seeds, which resembles the heating part of the deracemization process via temperature cycles.
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Affiliation(s)
| | | | - Marco Mazzotti
- Institute of Energy and Process
Engineering, ETH Zurich, 8092 Zurich, Switzerland
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7
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Buhse T, Cruz JM, Noble-Terán ME, Hochberg D, Ribó JM, Crusats J, Micheau JC. Spontaneous Deracemizations. Chem Rev 2021; 121:2147-2229. [DOI: 10.1021/acs.chemrev.0c00819] [Citation(s) in RCA: 54] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Thomas Buhse
- Centro de Investigaciones Químicas−IICBA, Universidad Autónoma del Estado de Morelos, Avenida Universidad 1001, 62209 Cuernavaca, Morelos Mexico
| | - José-Manuel Cruz
- Facultad de Ciencias en Física y Matemáticas, Universidad Autónoma de Chiapas, Tuxtla Gutiérrez, Chiapas 29050, Mexico
| | - María E. Noble-Terán
- Centro de Investigaciones Químicas−IICBA, Universidad Autónoma del Estado de Morelos, Avenida Universidad 1001, 62209 Cuernavaca, Morelos Mexico
| | - David Hochberg
- Department of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Carretera Ajalvir, Km. 4, 28850 Torrejón de Ardoz, Madrid Spain
| | - Josep M. Ribó
- Institut de Ciències del Cosmos (IEEC-ICC) and Departament de Química Inorgànica i Orgànica, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Catalunya Spain
| | - Joaquim Crusats
- Institut de Ciències del Cosmos (IEEC-ICC) and Departament de Química Inorgànica i Orgànica, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Catalunya Spain
| | - Jean-Claude Micheau
- Laboratoire des IMRCP, UMR au CNRS No. 5623, Université Paul Sabatier, F-31062 Toulouse Cedex, France
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8
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Spontaneous and Controlled Macroscopic Chiral Symmetry Breaking by Means of Crystallization. Symmetry (Basel) 2020. [DOI: 10.3390/sym12111796] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
In this paper, macroscopic chiral symmetry breaking refers to as the process in which a mixture of enantiomers departs from 50–50 symmetry to favor one chirality, resulting in either a scalemic mixture or a pure enantiomer. In this domain, crystallization offers various possibilities, from the classical Viedma ripening or Temperature Cycle-Induced Deracemization to the famous Kondepudi experiment and then to so-called Preferential Enrichment. These processes, together with some variants, will be depicted in terms of thermodynamic pathways, departure from equilibrium and operating conditions. Influential parameters on the final state will be reviewed as well as the impact of kinetics of the R ⇔ S equilibrium in solution on chiral symmetry breaking. How one can control the outcome of symmetry breaking is examined. Several open questions are detailed and different interpretations are discussed.
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Stereoselective Crystallization of Chiral 3,4-Dimethylphenyl Glycerol Ether Complicated by Plurality of Crystalline Modifications. CRYSTALS 2020. [DOI: 10.3390/cryst10030201] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Spontaneous resolution of Pasteur’s salt was historically the first way to obtain pure enantiomers from the racemate. The current increase in interest in the direct racemates resolution during crystallization is largely due to the opened prospects for the industrial application of this approach. The chiral 3-(3,4-dimethylphenoxy) propane-1,2-diol 1 is a synthetic precursor of practically useful amino alcohols, the enantiomers of which exhibit different biological effects. In this work, it was first discovered that racemic diol 1 is prone to spontaneous resolution. However, the crystallization process is complicated by the existence, along with the conglomerate, of two other crystalline forms. Using the differential scanning calorimetry (DSC) approach, methods have been developed to obtain individual metastable phases, and all identified modifications ((R)-1, (R+S)-1, α-rac-1, β-rac-1) were ranked by energy. The IR spectroscopy and powder X-ray diffraction (PXRD) methods demonstrated the identity of the first two forms and their proximity to the third, while β-rac-1 is significantly different from the rest. The crystal structure of the forms (R)-1 and α-rac-1 was established by the single crystal X-ray diffraction (SC-XRD) method. Preliminary information on the structure of β-rac-1 phase was obtained by the PXRD approach. Based on the information received, the experimental conditions for a successful direct resolution of racemic 1 into individual enantiomers by a preferential crystallization procedure were selected.
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