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Peón A, Robles A, Blanco B, Convertino M, Thompson P, Hawkins AR, Caflisch A, González-Bello C. Reducing the Flexibility of Type II Dehydroquinase for Inhibition: A Fragment-Based Approach and Molecular Dynamics Study. ChemMedChem 2017; 12:1512-1524. [DOI: 10.1002/cmdc.201700396] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2017] [Revised: 08/01/2017] [Indexed: 11/09/2022]
Affiliation(s)
- Antonio Peón
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares, CIQUS, and Departamento de Química Orgánica; Universidade de Santiago de Compostela; calle Jenaro de la Fuente s/n 15782 Santiago de Compostela Spain
| | - Adrián Robles
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares, CIQUS, and Departamento de Química Orgánica; Universidade de Santiago de Compostela; calle Jenaro de la Fuente s/n 15782 Santiago de Compostela Spain
| | - Beatriz Blanco
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares, CIQUS, and Departamento de Química Orgánica; Universidade de Santiago de Compostela; calle Jenaro de la Fuente s/n 15782 Santiago de Compostela Spain
| | - Marino Convertino
- Department of Biochemistry; University of Zurich; 8057 Zurich Switzerland
- Current address: Department of Biochemistry and Biophysics; University of North Carolina, School of Medicine; Chapel Hill NC 27599 USA
| | - Paul Thompson
- Institute of Cell and Molecular Biosciences, Medical School; University of Newcastle upon Tyne; Catherine Cookson Building, Framlington Place Newcastle upon Tyne NE2 4HH UK
| | - Alastair R. Hawkins
- Institute of Cell and Molecular Biosciences, Medical School; University of Newcastle upon Tyne; Catherine Cookson Building, Framlington Place Newcastle upon Tyne NE2 4HH UK
| | - Amedeo Caflisch
- Department of Biochemistry; University of Zurich; 8057 Zurich Switzerland
| | - Concepción González-Bello
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares, CIQUS, and Departamento de Química Orgánica; Universidade de Santiago de Compostela; calle Jenaro de la Fuente s/n 15782 Santiago de Compostela Spain
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Sturlese M, Bellanda M, Moro S. NMR-Assisted Molecular Docking Methodologies. Mol Inform 2015; 34:513-25. [DOI: 10.1002/minf.201500012] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2015] [Accepted: 04/24/2015] [Indexed: 11/11/2022]
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Oh T, Hayat F, Yoo E, Cho SN, Sheen YY, Kim DK, Park Choo HY. Antitubercular Activities of the Novel Synthesized 1,2,4-Triazole Derivatives. B KOREAN CHEM SOC 2015. [DOI: 10.1002/bkcs.10009] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Taegwon Oh
- Department of Microbiology and Institute for Immunology and Immunological Diseases, Brain Korea 21 Plus Project for the Medical Sciences; Yonsei University College of Medicine; Seoul 120-752 Republic of Korea
| | - Faisal Hayat
- College of Pharmacy & Graduate School of Pharmaceutical Sciences; Ewha Womans University; Seoul 120-750 Republic of Korea
| | - Euna Yoo
- College of Pharmacy & Graduate School of Pharmaceutical Sciences; Ewha Womans University; Seoul 120-750 Republic of Korea
| | - Sang-Nae Cho
- Department of Microbiology and Institute for Immunology and Immunological Diseases, Brain Korea 21 Plus Project for the Medical Sciences; Yonsei University College of Medicine; Seoul 120-752 Republic of Korea
| | - Yhun Yhung Sheen
- College of Pharmacy & Graduate School of Pharmaceutical Sciences; Ewha Womans University; Seoul 120-750 Republic of Korea
| | - Dae-Kee Kim
- College of Pharmacy & Graduate School of Pharmaceutical Sciences; Ewha Womans University; Seoul 120-750 Republic of Korea
| | - Hea-Young Park Choo
- College of Pharmacy & Graduate School of Pharmaceutical Sciences; Ewha Womans University; Seoul 120-750 Republic of Korea
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Mycobacteria inactivation using Engineered Water Nanostructures (EWNS). NANOMEDICINE-NANOTECHNOLOGY BIOLOGY AND MEDICINE 2014; 10:1175-83. [PMID: 24632246 DOI: 10.1016/j.nano.2014.02.016] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2014] [Revised: 02/21/2014] [Accepted: 02/28/2014] [Indexed: 11/20/2022]
Abstract
UNLABELLED Airborne transmitted pathogens such as Mycobacterium tuberculosis (Mtb) cause serious, often fatal infectious disease with enormous global health implications. Due to their unique cell wall and slow growth, mycobacteria are among the most resilient microbial forms. Herein we evaluate the ability of an emerging, chemical-free, nanotechnology-based method to inactivate M. parafortuitum (Mtb surrogate). This method is based on the transformation of atmospheric water vapor into engineered water nano-structures (EWNS) via electrospray. We demonstrate that the EWNS can interact with and inactivate airborne mycobacteria, reducing their concentration levels significantly. Additionally, EWNS can inactivate M. parafortuitum on surfaces eight times faster than the control. The mechanism of mycobacteria inactivation was also investigated in this study. It was demonstrated that the EWNS effectively deliver the reactive oxygen species, encapsulated during the electrospray process, to the bacteria oxidizing their cell membrane resulting into inactivation. Overall, this is a method with the potential to become an effective intervention technology in the battle against airborne infections. FROM THE CLINICAL EDITOR This study demonstrates the feasibility of mycobacterium inactivation in airborne form or on contact surfaces using electrospray activated water nano-structures. Given that the method is free of toxic chemicals, this might become an important tool in the prevention of mycobacterial infections, which are notoriously hard to treat.
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Pyrgiotakis G, McDevitt J, Bordini A, Diaz E, Molina R, Watson C, Deloid G, Lenard S, Fix N, Mizuyama Y, Yamauchi T, Brain J, Demokritou P. A chemical free, nanotechnology-based method for airborne bacterial inactivation using engineered water nanostructures. ENVIRONMENTAL SCIENCE. NANO 2014; 2014:15-26. [PMID: 26180637 PMCID: PMC4500755 DOI: 10.1039/c3en00007a] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Airborne pathogens are associated with the spread of infectious diseases and increased morbidity and mortality. Herein we present an emerging chemical free, nanotechnology-based method for airborne pathogen inactivation. This technique is based on transforming atmospheric water vapor into Engineered Water Nano-Structures (EWNS) via electrospray. The generated EWNS possess a unique set of physical, chemical, morphological and biological properties. Their average size is 25 nm and they contain reactive oxygen species (ROS) such as hydroxyl and superoxide radicals. In addition, EWNS are highly electrically charged (10 electrons per particle on average). A link between their electric charge and the reduction of their evaporation rate was illustrated resulting in an extended lifetime (over an hour) at room conditions. Furthermore, it was clearly demonstrated that the EWNS have the ability to interact with and inactivate airborne bacteria. Finally, inhaled EWNS were found to have minimal toxicological effects, as illustrated in an acute in-vivo inhalation study using a mouse model. In conclusion, this novel, chemical free, nanotechnology-based method has the potential to be used in the battle against airborne infectious diseases.
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Affiliation(s)
- Georgios Pyrgiotakis
- Center for Nanotechnology and Nanotoxicology, Harvard School of Public Health, Boston, MA, 02115, USA
| | - James McDevitt
- Center for Nanotechnology and Nanotoxicology, Harvard School of Public Health, Boston, MA, 02115, USA
| | - Andre Bordini
- Center for Nanotechnology and Nanotoxicology, Harvard School of Public Health, Boston, MA, 02115, USA
| | - Edgar Diaz
- Center for Nanotechnology and Nanotoxicology, Harvard School of Public Health, Boston, MA, 02115, USA
| | - Ramon Molina
- Center for Nanotechnology and Nanotoxicology, Harvard School of Public Health, Boston, MA, 02115, USA
| | - Christa Watson
- Center for Nanotechnology and Nanotoxicology, Harvard School of Public Health, Boston, MA, 02115, USA
| | - Glen Deloid
- Center for Nanotechnology and Nanotoxicology, Harvard School of Public Health, Boston, MA, 02115, USA
| | - Steve Lenard
- National Institute of Occupational Safety and Health, CDC, Morgantown, WV 26505, USA
| | - Natalie Fix
- National Institute of Occupational Safety and Health, CDC, Morgantown, WV 26505, USA
| | - Yosuke Mizuyama
- Center for Nanotechnology and Nanotoxicology, Harvard School of Public Health, Boston, MA, 02115, USA
| | | | - Joseph Brain
- Center for Nanotechnology and Nanotoxicology, Harvard School of Public Health, Boston, MA, 02115, USA
| | - Philip Demokritou
- Center for Nanotechnology and Nanotoxicology, Harvard School of Public Health, Boston, MA, 02115, USA
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Desai NHP, Bairwa R, Kakwani M, Tawari N, Ray MK, Rajan MG, Degani M. Novel 4H-1,2,4-triazol-3-yl cycloalkanols as potent antitubercular agents. Med Chem Res 2012. [DOI: 10.1007/s00044-012-0043-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Tizón L, Otero JM, Prazeres VFV, Llamas-Saiz AL, Fox GC, van Raaij MJ, Lamb H, Hawkins AR, Ainsa JA, Castedo L, González-Bello C. A Prodrug Approach for Improving Antituberculosis Activity of Potent Mycobacterium tuberculosis Type II Dehydroquinase Inhibitors. J Med Chem 2011; 54:6063-84. [DOI: 10.1021/jm2006063] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Lorena Tizón
- Centro Singular de Investigación en Química Biológica y Materiales Moleculares, Universidad de Santiago de Compostela, calle Jenaro de la Fuente s/n, 15782 Santiago de Compostela, Spain
| | - José M. Otero
- Laboratoire des Proteines Membranaires, Institut de Biologie Structurale J. P. Ebel, 38027 Grenoble, France
| | - Verónica F. V. Prazeres
- Centro Singular de Investigación en Química Biológica y Materiales Moleculares, Universidad de Santiago de Compostela, calle Jenaro de la Fuente s/n, 15782 Santiago de Compostela, Spain
| | - Antonio L. Llamas-Saiz
- Unidad de Rayos X, RIAIDT, Edificio CACTUS, Universidad de Santiago de Compostela, 15782 Santiago de Compostela, Spain
| | - Gavin C. Fox
- Laboratoire des Proteines Membranaires, Institut de Biologie Structurale J. P. Ebel, 38027 Grenoble, France
| | - Mark J. van Raaij
- Departamento de Estructura de Macromoléculas, Centro Nacional de Biotecnología (CSIC), Campus Cantoblanco, 28049 Madrid, Spain
| | - Heather Lamb
- Institute of Cell and Molecular Biosciences, Medical School, University of Newcastle upon Tyne, Newcastle upon Tyne NE2 4HH, U.K
| | - Alastair R. Hawkins
- Institute of Cell and Molecular Biosciences, Medical School, University of Newcastle upon Tyne, Newcastle upon Tyne NE2 4HH, U.K
| | - José A. Ainsa
- Grupo de Genética de Micobacterias, Departamento de Microbiología, Medicina Preventiva y Salud Pública, Facultad de Medicina, 50009 Zaragoza, Spain, and CIBER Enfermedades Respiratorias, Spain
| | - Luis Castedo
- Departamento de Química Orgánica, Facultad de Química, Universidad de Santiago de Compostela, Avenida de las Ciencias s/n, 15782 Santiago de Compostela, Spain
| | - Concepción González-Bello
- Centro Singular de Investigación en Química Biológica y Materiales Moleculares, Universidad de Santiago de Compostela, calle Jenaro de la Fuente s/n, 15782 Santiago de Compostela, Spain
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Calle LP, Cañada FJ, Jiménez-Barbero J. Application of NMR methods to the study of the interaction of natural products with biomolecular receptors. Nat Prod Rep 2011; 28:1118-25. [DOI: 10.1039/c0np00071j] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Prazeres VFV, Castedo L, Lamb H, Hawkins AR, González-Bello C. 2-substituted-3-dehydroquinic acids as potent competitive inhibitors of type II dehydroquinase. ChemMedChem 2010; 4:1980-4. [PMID: 19856378 DOI: 10.1002/cmdc.200900319] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Verónica F V Prazeres
- Laboratorio de Química Orgánica (CSIC) y Departamento de Química Orgánica, Facultad de Química, Universidad de Santiago de Compostela, Avenida de las Ciencias s/n, 15782 Santiago de Compostela, Spain
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Sánchez-Sixto C, Prazeres VF, Castedo L, Suh S, Lamb H, Hawkins A, Cañada F, Jiménez-Barbero J, González-Bello C. Competitive Inhibitors ofHelicobacter pylori Type II Dehydroquinase: Synthesis, Biological Evaluation, and NMR Studies. ChemMedChem 2008; 3:756-70. [DOI: 10.1002/cmdc.200700307] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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Prazeres VFV, Sánchez-Sixto C, Castedo L, Lamb H, Hawkins AR, Riboldi-Tunnicliffe A, Coggins JR, Lapthorn AJ, González-Bello C. Nanomolar Competitive Inhibitors ofMycobacterium tuberculosis andStreptomyces coelicolor Type II Dehydroquinase. ChemMedChem 2007; 2:194-207. [PMID: 17245805 DOI: 10.1002/cmdc.200600208] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Isomeric nitrophenyl and heterocyclic analogues of the known inhibitor (1S,3R,4R)-1,3,4-trihydroxy-5-cyclohexene-1-carboxylic acid have been synthesized and tested as inhibitors of M. tuberculosis and S. coelicolor type II dehydroquinase, the third enzyme of the shikimic acid pathway. The target compounds were synthesized by a combination of Suzuki and Sonogashira cross-coupling and copper(I)-catalyzed 2,3-dipolar cycloaddition reactions from a common vinyl triflate intermediate. These studies showed that a para-nitrophenyl derivative is almost 20-fold more potent as a competitive inhibitor against the S. coelicolor enzyme than that of M. tuberculosis. The opposite results were obtained with the meta isomer. Five of the bicyclic analogues reported herein proved to be potent competitive inhibitors of S. coelicolor dehydroquinase, with inhibition constants in the low nanomolar range (4-30 nM). These derivatives are also competitive inhibitors of the M. tuberculosis enzyme, but with lower affinities. The most potent inhibitor against the S. coelicolor enzyme, a 6-benzothiophenyl derivative, has a K(i) value of 4 nM-over 2000-fold more potent than the best previously known inhibitor, (1R,4R,5R)-1,5-dihydroxy-4-(2-nitrophenyl)cyclohex-2-en-1-carboxylic acid (8 microM), making it the most potent known inhibitor against any dehydroquinase. The binding modes of the analogues in the active site of the S. coelicolor enzyme (GOLD 3.0.1), suggest a key pi-stacking interaction between the aromatic rings and Tyr 28, a residue that has been identified as essential for enzyme activity.
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Affiliation(s)
- Verónica F V Prazeres
- Laboratorio de Química Orgánica, CSIC and Departamento de Química Orgánica, Facultad de Química, Universidad de Santiago de Compostela, Avenida de las Ciencias s/n, 15782 Santiago de Compostela, Spain
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