1
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Liu Y, Zhang W, Li M, Zhao Y, Zhao X, Yuan K. Noncovalent interactions and properties of host-guest systems based on C82/C82Gd bucky-balls and symmetry broken nanohoop TP-[11]CPP. J Chem Phys 2025; 162:094303. [PMID: 40035581 DOI: 10.1063/5.0255637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2024] [Accepted: 02/13/2025] [Indexed: 03/05/2025] Open
Abstract
The nanoscale host-guest interactions between a symmetry broken carbonaceous nanohoop TP-[11]cycloparaphenylene (TP-[11]CPP) and endohedral metallofullerene (EMF) C82Gd were explored by using density functional theory calculations. The geometry mutual-matching between TP-[11]CPP and C82Gd is perfect, and the two main configurations of TP-[11]CPP@C82Gd host-guest complexes could be formed spontaneously with high binding energies. Interestingly, the position of the Gd atom in the C82 cage can be adjusted by its external host molecule. The binding strength depends on the structure of the host, but the binding thermodynamics is decided by the structure of the fullerene cage. The selective binding of empty cage C82 from its mixture with EMF C82Gd is discussed by using a standard Boltzmann expression of statistical thermodynamics. In addition, the FT-IR and UV-visible spectra are simulated, host-guest noncovalent interaction regions are investigated based on the electron density and reduced density gradient, and magnetic susceptibility is preliminarily investigated, which may be helpful for a deep understanding of the present host-guest systems in the future. It is anticipated that such a theoretical calculation regarding to carbonaceous nanosize host-guest structures would be a driven force for the developments of novel nanohoop@EMF systems in functional materials, nonchromatographic separation and even nano single molecular electret devices.
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Affiliation(s)
- Yanzhi Liu
- College of Chemical Engineering and Technology, Key Laboratory for New Molecule Materials Design and Function of Gansu Universities, Key Laboratory of Advanced Optoelectronic Functional Materials of Gansu Province, Tianshui Normal University, Tianshui 741001, China
| | - Wenbo Zhang
- College of Chemical Engineering and Technology, Key Laboratory for New Molecule Materials Design and Function of Gansu Universities, Key Laboratory of Advanced Optoelectronic Functional Materials of Gansu Province, Tianshui Normal University, Tianshui 741001, China
| | - Mengyang Li
- School of Physics, Xidian University, Xi'an 710071, China
| | - Yaoxiao Zhao
- School of Materials Science and Chemical Engineering, Xi'an Technological University, Xi'an 710021, China
| | - Xiang Zhao
- Institute of Molecular Science and Applied Chemistry, School of Chemistry, Xi'an Jiaotong University, Xi'an 710049, China
| | - Kun Yuan
- College of Chemical Engineering and Technology, Key Laboratory for New Molecule Materials Design and Function of Gansu Universities, Key Laboratory of Advanced Optoelectronic Functional Materials of Gansu Province, Tianshui Normal University, Tianshui 741001, China
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2
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Yuan K, Li M, Zhao Y, Liu Y, Zhao X. Composition‐selective
full inclusion host–guest interaction of
azobenzene‐containing
photoresponsive nanoring with fullerene
C
60
. J Comput Chem 2022; 43:1276-1285. [DOI: 10.1002/jcc.26931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Revised: 04/12/2022] [Accepted: 05/04/2022] [Indexed: 11/09/2022]
Affiliation(s)
- Kun Yuan
- College of Chemical Engineering & Technology Tianshui Normal University Tianshui China
| | - Mengyang Li
- Institute of Molecular Science & Applied Chemistry, School of Chemistry Xi'an Jiaotong University Xi'an China
| | - Yaoxiao Zhao
- Institute of Molecular Science & Applied Chemistry, School of Chemistry Xi'an Jiaotong University Xi'an China
- School of Materials Science and Chemical Engineering Xi'an Technological University Xi'an China
| | - Yanzhi Liu
- College of Chemical Engineering & Technology Tianshui Normal University Tianshui China
| | - Xiang Zhao
- Institute of Molecular Science & Applied Chemistry, School of Chemistry Xi'an Jiaotong University Xi'an China
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3
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Liu YZ, Zhang JB, Yuan K. Theoretical Prediction on a Novel Reduction-Responsive Nanoring Having a Disulfide Group for Facile Encapsulation and Release of Fullerenes C 60 and C 70. ACS OMEGA 2020; 5:25400-25407. [PMID: 33043220 PMCID: PMC7542849 DOI: 10.1021/acsomega.0c03788] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Accepted: 09/15/2020] [Indexed: 06/11/2023]
Abstract
In this work, a novel reduction-responsive disulfide bond-containing cycloparaphenylene nanoring molecule (DSCPP) with a pyriform shape has been designed. In addition, the interactions between the designed nanoring (host) and fullerenes C60 and C70 (guests) were investigated theoretically at the M06-2X/6-31G(d,p) and M06-L/MIDI! levels of theory. By analyzing geometric characteristics and host-guest binding energies, it is revealed that the designed DSCPP is an ideal host molecule of guests C60 and C70. DSCPP presents excellent elastic deformation during the encapsulation of C60 and C70. The high binding energies suggest that both DSCPP⊃C60 and DSCPP⊃C70 (∼92 and 118 kJ·mol-1 at the M06-2X/6-31G(d,p) level of theory) are stable host-guest complexes, and the guest C70 is more strongly encapsulated than C60 in the gas phase. The thermodynamic information indicates that the formation of the two host-guest complexes is thermodynamically spontaneous. In addition, the frontier molecular orbital (FMO) features and intermolecular weak interaction region between DSCPP and fullerenes gusts are discussed to further understand the structures and properties of the DSCPP⊃fullerene systems. Finally, the ring-opening mechanism of the DSCPP under reduction conditions is investigated.
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Affiliation(s)
- Yan-Zhi Liu
- School
of Chemical Engineering and Technology, Tianshui Normal University, Tianshui 741001, China
- Key
Laboratory for New Molecule Materials Design and Function of Gansu
Universities, Tianshui Normal University, Tianshui 741001, China
| | - Jian-Bin Zhang
- School
of Chemical Engineering and Technology, Tianshui Normal University, Tianshui 741001, China
| | - Kun Yuan
- School
of Chemical Engineering and Technology, Tianshui Normal University, Tianshui 741001, China
- Key
Laboratory for New Molecule Materials Design and Function of Gansu
Universities, Tianshui Normal University, Tianshui 741001, China
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4
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Pérez‐Jiménez ÁJ, Sancho‐García JC. Theoretical Insights for Materials Properties of Cyclic Organic Nanorings. ADVANCED THEORY AND SIMULATIONS 2020. [DOI: 10.1002/adts.202000110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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5
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Miki K, Ohe K. π‐Conjugated Macrocycles Bearing Angle‐Strained Alkynes. Chemistry 2019; 26:2529-2575. [DOI: 10.1002/chem.201904114] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2019] [Revised: 10/24/2019] [Indexed: 11/09/2022]
Affiliation(s)
- Koji Miki
- Department of Energy and Hydrocarbon ChemistryGraduate School of EngineeringKyoto University Katsura Nishikyo-ku Kyoto 615–8510 Japan
| | - Kouichi Ohe
- Department of Energy and Hydrocarbon ChemistryGraduate School of EngineeringKyoto University Katsura Nishikyo-ku Kyoto 615–8510 Japan
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6
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Yuan K, Zhao RS, Li MY, Liu YZ, Yuan Z, Zhao SD, Zhao X. Noncovalent interactions between O6
-corona[6]arene nanorings and fullerenes C60
and C70
: atypical ring ball-shaped host-guest systems. J PHYS ORG CHEM 2018. [DOI: 10.1002/poc.3892] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Kun Yuan
- Institute for Chemical Physics and Department of Chemistry, School of Science and School of Mechanical Engineering; Xi'an Jiaotong University; Xi'an China
- College of Chemical Engineering and Technology; Tianshui Normal University; Tianshui China
| | - Rui-Sheng Zhao
- Institute for Chemical Physics and Department of Chemistry, School of Science and School of Mechanical Engineering; Xi'an Jiaotong University; Xi'an China
| | - Meng-Yang Li
- Institute for Chemical Physics and Department of Chemistry, School of Science and School of Mechanical Engineering; Xi'an Jiaotong University; Xi'an China
| | - Yan-Zhi Liu
- College of Chemical Engineering and Technology; Tianshui Normal University; Tianshui China
| | - Zhao Yuan
- Department of Chemical and Biomedical Engineering; Florida State University; Tallahassee FL USA
| | - Sheng-Dun Zhao
- Institute for Chemical Physics and Department of Chemistry, School of Science and School of Mechanical Engineering; Xi'an Jiaotong University; Xi'an China
| | - Xiang Zhao
- Institute for Chemical Physics and Department of Chemistry, School of Science and School of Mechanical Engineering; Xi'an Jiaotong University; Xi'an China
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7
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Aquilante F, Delcey MG, Pedersen TB, Fdez. Galván I, Lindh R. Inner projection techniques for the low-cost handling of two-electron integrals in quantum chemistry. Mol Phys 2017. [DOI: 10.1080/00268976.2017.1284354] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Francesco Aquilante
- Dipartimento di Chimica “G. Ciamician”, Università di Bologna, Bologna, Italy
| | - Mickaël G. Delcey
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, CA, USA
| | - Thomas Bondo Pedersen
- Centre for Theoretical and Computational Chemistry, Department of Chemistry, University of Oslo, Blindern, Oslo, Norway
| | - Ignacio Fdez. Galván
- Department of Chemistry – Ångström, The Theoretical Chemistry Programme, Uppsala University, Uppsala, Sweden
- Uppsala Center for Computational Chemistry – UC3, Uppsala University, Uppsala, Sweden
| | - Roland Lindh
- Department of Chemistry – Ångström, The Theoretical Chemistry Programme, Uppsala University, Uppsala, Sweden
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8
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Liu YZ, Yuan K, Yuan Z, Zhu YC, Zhao SD, Lv LL. Corannulene–fullerene C70 noncovalent interactions and their effect on the behavior of charge transport and optical property. RSC Adv 2017. [DOI: 10.1039/c7ra03923a] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
Corannulene–fullerene C70 noncovalent interactions and their effect on the behavior of charge transport and optical property are investigated at a molecular level via the dispersion-corrected density functional theory calculations.
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Affiliation(s)
- Yan-Zhi Liu
- College of Chemical Engineering and Technology
- Tianshui Normal University
- Tianshui 741001
- China
| | - Kun Yuan
- College of Chemical Engineering and Technology
- Tianshui Normal University
- Tianshui 741001
- China
- Institute for Chemical Physics
| | - Zhao Yuan
- Department of Chemical and Biomedical Engineering
- Florida State University
- Tallahassee
- USA
| | - Yuan-Cheng Zhu
- College of Chemical Engineering and Technology
- Tianshui Normal University
- Tianshui 741001
- China
| | - Sheng-Dun Zhao
- Institute for Chemical Physics
- Department of Chemistry
- School of Science
- State Key Laboratory of Electrical Insulation and Power Equipment
- School of Mechanical Engineering
| | - Ling-Ling Lv
- College of Chemical Engineering and Technology
- Tianshui Normal University
- Tianshui 741001
- China
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9
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Lugo G, Cuesta IG, Sánchez Marín J, Sánchez de Merás A. MP2 Study of Physisorption of Molecular Hydrogen onto Defective Nanotubes: Cooperative Effect in Stone–Wales Defects. J Phys Chem A 2016; 120:4951-60. [DOI: 10.1021/acs.jpca.5b12589] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- G. Lugo
- Instituto de Ciencia Molecular, Universidad de Valencia, P.O. Box 22085, 46071 Valencia, Spain
| | - I. G. Cuesta
- Instituto de Ciencia Molecular, Universidad de Valencia, P.O. Box 22085, 46071 Valencia, Spain
| | - J. Sánchez Marín
- Instituto de Ciencia Molecular, Universidad de Valencia, P.O. Box 22085, 46071 Valencia, Spain
| | - A. Sánchez de Merás
- Instituto de Ciencia Molecular, Universidad de Valencia, P.O. Box 22085, 46071 Valencia, Spain
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10
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Yuan K, Guo YJ, Zhao X. A novel photo-responsive azobenzene-containing nanoring host for fullerene-guest facile encapsulation and release. Phys Chem Chem Phys 2015; 16:27053-64. [PMID: 25382786 DOI: 10.1039/c4cp03687e] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Azobenzenes in particular have been proved to have a robust photo-response, in which their configuration can transform between the trans- and cis-form upon UV-visible irradiation. Accordingly, azobenzene-containing molecules are frequently applied in the design of the guests, involving so-called host-guest chemistry. In this paper, a novel photo-responsive nanoring host molecule ([4]AB) has been designed by introducing four azobenzene groups onto the ring, and interactions between the designed nanoring host and fullerenes C60 and C70 guests were investigated at both the M06-L/MIDI! as well as M06-2X/6-31G(d) level of theory. By analyzing the geometric characteristics and host-guest binding energies, it is revealed that the designed [4]AB with diameter ca. 13.4 Å is an ideal host molecule for the encapsulation of guests C60 and C70 fullerene. Meanwhile, inferred from UV-vis-NIR spectroscopy, the guest C60 and C70 could be facilely released from the cavity of the [4]AB via configuration transformation between trans- and cis-form of the host under 474 and 506 nm photo-irradiation, respectively. Frontier orbital features, weak interaction regions, infrared spectroscopy and (1)H NMR spectra have also been theoretically simulated. The present work would provide a new strategy for facile reversible encapsulation and release of fullerene guest by a novel nanoring host.
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Affiliation(s)
- Kun Yuan
- Institute for Chemical Physics & Department of Chemistry, State Key Laboratory of Electrical Insulation and Power Equipment, Xi'an Jiaotong University, Xi'an 710049, China.
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11
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Yuan K, Dang JS, Guo YJ, Zhao X. Theoretical prediction of the host-guest interactions between novel photoresponsive nanorings and C60: A strategy for facile encapsulation and release of fullerene. J Comput Chem 2015; 36:518-28. [DOI: 10.1002/jcc.23824] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2014] [Revised: 12/01/2014] [Accepted: 12/03/2014] [Indexed: 01/20/2023]
Affiliation(s)
- Kun Yuan
- Institute for Chemical Physics and Department of Chemistry; State Key Laboratory of Electrical Insulation and Power Equipment, Xi'an Jiaotong University; Xi'an 710049 China
- Department of Chemistry; College of Chemical engineering and Technology, Tianshui Normal University; Tianshui 741001 China
| | - Jing-Shuang Dang
- Institute for Chemical Physics and Department of Chemistry; State Key Laboratory of Electrical Insulation and Power Equipment, Xi'an Jiaotong University; Xi'an 710049 China
| | - Yi-Jun Guo
- Institute for Chemical Physics and Department of Chemistry; State Key Laboratory of Electrical Insulation and Power Equipment, Xi'an Jiaotong University; Xi'an 710049 China
| | - Xiang Zhao
- Institute for Chemical Physics and Department of Chemistry; State Key Laboratory of Electrical Insulation and Power Equipment, Xi'an Jiaotong University; Xi'an 710049 China
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12
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Yuan K, Zhou CH, Zhu YC, Zhao X. Theoretical exploration of the nanoscale host–guest interactions between [n]cycloparaphenylenes (n = 10, 8 and 9) and fullerene C60: from single- to three-potential well. Phys Chem Chem Phys 2015; 17:18802-12. [DOI: 10.1039/c5cp02882e] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The host–guest interactions between C60 and [n]cycloparaphenylene ([n]CPP; n = 10, 8 and 9) are in the manner of single-, double- and three-potential wells, respectively.
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Affiliation(s)
- Kun Yuan
- Institute for Chemical Physics & Department of Chemistry
- State Key Laboratory of Electrical Insulation and Power Equipment
- Xi'an Jiaotong University
- Xi'an 710049
- China
| | - Cai-Hua Zhou
- Institute for Chemical Physics & Department of Chemistry
- State Key Laboratory of Electrical Insulation and Power Equipment
- Xi'an Jiaotong University
- Xi'an 710049
- China
| | - Yuan-Cheng Zhu
- College of Chemical Engineering and Technology
- Tianshui Normal University
- Tianshui
- China
| | - Xiang Zhao
- Institute for Chemical Physics & Department of Chemistry
- State Key Laboratory of Electrical Insulation and Power Equipment
- Xi'an Jiaotong University
- Xi'an 710049
- China
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13
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Cuesta IG, Sánchez de Merás AMJ. Energy interactions in amyloid-like fibrils from NNQQNY. Phys Chem Chem Phys 2014; 16:4369-77. [PMID: 24458317 DOI: 10.1039/c3cp53551g] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
We use large-scale MP2 calculations to analyze the interactions appearing in amyloid fibers, which are difficult to determine experimentally. To this end, dimers and trimers of the hexapeptide NNQQNY from the yeast prion-like protein Sup35 were considered as model systems. We studied the energy interactions present in the three levels of organization in which the formation of amyloid fibrils is structured. The structural changes in the hydrogen bonds were studied too. It was found that the most energetic process is the formation of the β-sheet, which is equally due to both hydrogen bonds and van der Waals interactions. The aromatic rings help stabilize these aggregates through stacking of the aromatic rings of tyrosine, the stability produced by the aromatics residues increasing with their aromaticity. The formation of the basic unit of the assembled proto-fiber, the steric zipper, is less energetic and is associated to both dispersion forces and hydrogen bonds. The interactions between pair of β-sheets across the peptide-to-peptide contact through the tyrosine rings are cooperative and due to dispersion effects. Moreover, the strength of this interaction can rationalize the variation of mobility of the aromatic ring in the tyrosine units found in solid NMR experiments.
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Affiliation(s)
- Inmaculada García Cuesta
- Instituto de Ciencia Molecular, Universidad de Valencia, P.O. Box 22085, E-46071 Valencia, Spain.
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14
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Koohi M, Ghavami M, Haerizade BN, Zandi H, Kassaee MZ. Cyclacenes and short zigzag nanotubes with alternanting Ge―C bonds: theoretical impacts of Ge on the ground state, strain, and band gap. J PHYS ORG CHEM 2014. [DOI: 10.1002/poc.3333] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Maryam Koohi
- Department of Chemistry; Tarbiat Modares University; P.O. Box 14115-175 Tehran Iran
| | - Monireh Ghavami
- Department of Chemistry; Tarbiat Modares University; P.O. Box 14115-175 Tehran Iran
| | | | - Hasan Zandi
- Department of Chemistry; Tarbiat Modares University; P.O. Box 14115-175 Tehran Iran
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15
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Yuan K, Guo YJ, Yang T, Dang JS, Zhao P, Li QZ, Zhao X. Theoretical insights into the host-guest interactions between [6]cycloparaphenyleneacetylene and its anthracene-containing derivative and fullerene C70. J PHYS ORG CHEM 2014. [DOI: 10.1002/poc.3324] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Kun Yuan
- Institute for Chemical Physics & Department of Chemistry, State Key Laboratory of Electrical Insulation and Power Equipment; Xi'an Jiaotong University; Xi'an 710049 China
| | - Yi-Jun Guo
- Institute for Chemical Physics & Department of Chemistry, State Key Laboratory of Electrical Insulation and Power Equipment; Xi'an Jiaotong University; Xi'an 710049 China
| | - Tao Yang
- Institute for Chemical Physics & Department of Chemistry, State Key Laboratory of Electrical Insulation and Power Equipment; Xi'an Jiaotong University; Xi'an 710049 China
| | - Jing-Shuang Dang
- Institute for Chemical Physics & Department of Chemistry, State Key Laboratory of Electrical Insulation and Power Equipment; Xi'an Jiaotong University; Xi'an 710049 China
| | - Pei Zhao
- Institute for Chemical Physics & Department of Chemistry, State Key Laboratory of Electrical Insulation and Power Equipment; Xi'an Jiaotong University; Xi'an 710049 China
| | - Qiao-Zhi Li
- Institute for Chemical Physics & Department of Chemistry, State Key Laboratory of Electrical Insulation and Power Equipment; Xi'an Jiaotong University; Xi'an 710049 China
| | - Xiang Zhao
- Institute for Chemical Physics & Department of Chemistry, State Key Laboratory of Electrical Insulation and Power Equipment; Xi'an Jiaotong University; Xi'an 710049 China
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16
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Miki K, Matsushita T, Inoue Y, Senda Y, Kowada T, Ohe K. Electron-rich carbon nanorings as macrocyclic hosts for fullerenes. Chem Commun (Camb) 2013; 49:9092-4. [PMID: 23715441 DOI: 10.1039/c3cc42561d] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Electron-rich cycloparaphenyleneacetylenes as well as their twin "glasses-like" conjugates form stable complexes with fullerenes.
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Affiliation(s)
- Koji Miki
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan.
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17
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Hjertenæs E, Andersson S, Koch H. Assessment of density functionals for van der Waals complexes of sodium and benzene. Mol Phys 2013. [DOI: 10.1080/00268976.2013.794982] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Eirik Hjertenæs
- a Department of Chemistry , Norwegian University of Science and Technology , Trondheim , 7491 , Norway
| | - Stefan Andersson
- b SINTEF Materials and Chemistry , P.O. Box 4760, Trondheim , 7465 , Norway
| | - Henrik Koch
- a Department of Chemistry , Norwegian University of Science and Technology , Trondheim , 7491 , Norway
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18
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Cholesky Decomposition Techniques in Electronic Structure Theory. CHALLENGES AND ADVANCES IN COMPUTATIONAL CHEMISTRY AND PHYSICS 2011. [DOI: 10.1007/978-90-481-2853-2_13] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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19
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Ali MA, Krishnan MS. Computational studies on cyclic [n]paraphenyleneacetylenes using homodesmotic reactions. Mol Phys 2009. [DOI: 10.1080/00268970903193002] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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20
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Aquilante F, Gagliardi L, Pedersen TB, Lindh R. Atomic Cholesky decompositions: a route to unbiased auxiliary basis sets for density fitting approximation with tunable accuracy and efficiency. J Chem Phys 2009; 130:154107. [PMID: 19388736 DOI: 10.1063/1.3116784] [Citation(s) in RCA: 177] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
Cholesky decomposition of the atomic two-electron integral matrix has recently been proposed as a procedure for automated generation of auxiliary basis sets for the density fitting approximation [F. Aquilante et al., J. Chem. Phys. 127, 114107 (2007)]. In order to increase computational performance while maintaining accuracy, we propose here to reduce the number of primitive Gaussian functions of the contracted auxiliary basis functions by means of a second Cholesky decomposition. Test calculations show that this procedure is most beneficial in conjunction with highly contracted atomic orbital basis sets such as atomic natural orbitals, and that the error resulting from the second decomposition is negligible. We also demonstrate theoretically as well as computationally that the locality of the fitting coefficients can be controlled by means of the decomposition threshold even with the long-ranged Coulomb metric. Cholesky decomposition-based auxiliary basis sets are thus ideally suited for local density fitting approximations.
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Affiliation(s)
- Francesco Aquilante
- Department of Physical Chemistry, Université de Genève-Science II, 30 quai Ernest-Ansermet, CH-1211 Geneva 4, Switzerland.
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21
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Aquilante F, Pedersen TB, Lindh R, Roos BO, Sánchez de Merás A, Koch H. Accurate ab initio density fitting for multiconfigurational self-consistent field methods. J Chem Phys 2008; 129:024113. [PMID: 18624522 DOI: 10.1063/1.2953696] [Citation(s) in RCA: 149] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
Using Cholesky decomposition and density fitting to approximate the electron repulsion integrals, an implementation of the complete active space self-consistent field (CASSCF) method suitable for large-scale applications is presented. Sample calculations on benzene, diaquo-tetra-mu-acetato-dicopper(II), and diuraniumendofullerene demonstrate that the Cholesky and density fitting approximations allow larger basis sets and larger systems to be treated at the CASSCF level of theory with controllable accuracy. While strict error control is an inherent property of the Cholesky approximation, errors arising from the density fitting approach are managed by using a recently proposed class of auxiliary basis sets constructed from Cholesky decomposition of the atomic electron repulsion integrals.
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Affiliation(s)
- Francesco Aquilante
- Department of Theoretical Chemistry, Chemical Center, University of Lund, P.O. Box 124, S-221 00 Lund, Sweden.
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22
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Boman L, Koch H, Sánchez de Merás A. Method specific Cholesky decomposition: Coulomb and exchange energies. J Chem Phys 2008; 129:134107. [DOI: 10.1063/1.2988315] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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23
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Aquilante F, Lindh R, Pedersen TB. Analytic derivatives for the Cholesky representation of the two-electron integrals. J Chem Phys 2008; 129:034106. [DOI: 10.1063/1.2955755] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Zhao Y, Truhlar DG. Computational characterization and modeling of buckyball tweezers: density functional study of concave–convex π⋯π interactions. Phys Chem Chem Phys 2008; 10:2813-8. [DOI: 10.1039/b717744e] [Citation(s) in RCA: 186] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Aquilante F, Lindh R, Pedersen TB. Unbiased auxiliary basis sets for accurate two-electron integral approximations. J Chem Phys 2007; 127:114107. [PMID: 17887828 DOI: 10.1063/1.2777146] [Citation(s) in RCA: 272] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We propose Cholesky decomposition (CD) of the atomic two-electron integral matrix as a robust and general technique for generating auxiliary basis sets for the density fitting approximation. The atomic CD (aCD) auxiliary basis set is calculated on the fly and is not biased toward a particular quantum chemical method. Moreover, the accuracy of the aCD basis set can be controlled with a single parameter.
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Affiliation(s)
- Francesco Aquilante
- Department of Theoretical Chemistry, Chemical Center, University of Lund, P.O. Box 124, S-221 00 Lund, Sweden.
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Aquilante F, Pedersen TB, Lindh R. Low-cost evaluation of the exchange Fock matrix from Cholesky and density fitting representations of the electron repulsion integrals. J Chem Phys 2007; 126:194106. [PMID: 17523797 DOI: 10.1063/1.2736701] [Citation(s) in RCA: 254] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Abstract
The authors propose a new algorithm, "local K" (LK), for fast evaluation of the exchange Fock matrix in case the Cholesky decomposition of the electron repulsion integrals is used. The novelty lies in the fact that rigorous upper bounds to the contribution from each occupied orbital to the exchange Fock matrix are employed. By formulating these inequalities in terms of localized orbitals, the scaling of computing the exchange Fock matrix is reduced from quartic to quadratic with only negligible prescreening overhead and strict error control. Compared to the unscreened Cholesky algorithm, the computational saving is substantial for systems of medium and large sizes. By virtue of its general formulation, the LK algorithm can be used also within the class of methods that employ auxiliary basis set expansions for representing the electron repulsion integrals.
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Affiliation(s)
- Francesco Aquilante
- Department of Theoretical Chemistry, Chemical Center, University of Lund, P.O. Box 124, S-22100 Lund, Sweden.
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Kawase T, Nishiyama Y, Nakamura T, Ebi T, Matsumoto K, Kurata H, Oda M. Cyclic [5]Paraphenyleneacetylene: Synthesis, Properties, and Formation of a Ring-in-Ring Complex Showing a Considerably Large Association Constant and Entropy Effect. Angew Chem Int Ed Engl 2007; 46:1086-8. [PMID: 17183516 DOI: 10.1002/anie.200603707] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Takeshi Kawase
- Department of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan.
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Kawase T, Nishiyama Y, Nakamura T, Ebi T, Matsumoto K, Kurata H, Oda M. Cyclic [5]Paraphenyleneacetylene: Synthesis, Properties, and Formation of a Ring-in-Ring Complex Showing a Considerably Large Association Constant and Entropy Effect. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200603707] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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